cmdline: /opt/conda/share/sentieon-202308.03-3/libexec/driver -r Homo_sapiens_assembly38.fasta -t 12 --interval chr1_69091-70008.bed.gz -i Sig_18_Blood.recalibrated.bam --algo Haplotyper -d dbsnp_146.hg38.vcf.gz --emit_mode variant germline_control_2.haplotyper.chr1_69091-70008.bed.unfiltered.vcf.gz
This software is licensed to bgold@natera.com by Sentieon Inc.
progress 5% @chr1:18634302, elapsed 0.0s, est remaining 0.9s, peak mem 72MB, user 0.1s, sys 0.1s, output queue size 2061
progress 10% @chr1:37794183, elapsed 0.1s, est remaining 0.9s, peak mem 72MB, user 0.1s, sys 0.3s, output queue size 4713
progress 15% @chr1:65408641, elapsed 0.1s, est remaining 0.8s, peak mem 93MB, user 0.1s, sys 0.4s, output queue size 7437
progress 20% @chr1:113837590, elapsed 0.2s, est remaining 0.8s, peak mem 105MB, user 0.2s, sys 0.7s, output queue size 421
progress 25% @chr1:155248050, elapsed 0.2s, est remaining 0.7s, peak mem 111MB, user 0.2s, sys 0.8s, output queue size 2764
progress 30% @chr1:179102287, elapsed 0.3s, est remaining 0.7s, peak mem 123MB, user 0.2s, sys 1.0s, output queue size 5235
progress 35% @chr1:209796348, elapsed 0.3s, est remaining 0.6s, peak mem 129MB, user 0.3s, sys 1.2s, output queue size 7667
progress 40% @chr1:246986967, elapsed 0.4s, est remaining 0.6s, peak mem 138MB, user 0.3s, sys 1.4s, output queue size 10074
progress 45% @chr2:32597751, elapsed 0.4s, est remaining 0.5s, peak mem 153MB, user 0.4s, sys 1.5s, output queue size 12365
progress 50% @chr2:74505737, elapsed 0.5s, est remaining 0.5s, peak mem 156MB, user 0.4s, sys 1.7s, output queue size 14887
progress 55% @chr2:113499257, elapsed 0.5s, est remaining 0.4s, peak mem 162MB, user 0.4s, sys 2.0s, output queue size 17382
progress 60% @chr2:170965790, elapsed 0.6s, est remaining 0.4s, peak mem 177MB, user 0.5s, sys 2.3s, output queue size 20077
progress 65% @chr2:202757213, elapsed 0.7s, est remaining 0.4s, peak mem 189MB, user 0.5s, sys 2.6s, output queue size 22346
progress 70% @chr2:233772261, elapsed 0.7s, est remaining 0.3s, peak mem 195MB, user 0.5s, sys 2.9s, output queue size 24828
progress 75% @chr3:25615431, elapsed 0.8s, est remaining 0.3s, peak mem 204MB, user 0.6s, sys 3.1s, output queue size 27052
progress 80% @chr3:49812408, elapsed 1.3s, est remaining 0.3s, peak mem 210MB, user 0.6s, sys 3.3s, output queue size 29540
progress 85% @chr3:102438480, elapsed 1.4s, est remaining 0.3s, peak mem 213MB, user 0.7s, sys 3.6s, output queue size 32162
progress 90% @chr3:139561010, elapsed 1.5s, est remaining 0.2s, peak mem 219MB, user 0.7s, sys 3.9s, output queue size 34756
progress 95% @chr3:188239635, elapsed 1.7s, est remaining 0.1s, peak mem 219MB, user 0.7s, sys 4.1s, output queue size 37165
progress 100% @chr4:26420551, elapsed 1.8s, est remaining 0.0s, peak mem 225MB, user 0.7s, sys 4.4s, output queue size 39402
sw version: sentieon-genomics-202308.03
os version: Linux 6.12.88
cpu vendor: GenuineIntel
 signature: 000a06d1
  features: 1f8bfbff fffab20b
  extended: f1bf27eb 1b407f7e
  amd bits: 2c100800 00000121
     brand: Intel(R) Xeon(R) 6975P-C
threads: 12 max 384
algo: Haplotyper
license: sentieon:Haplotyper=12
input file size: 74586799
output file size: 22307
reads: 1001133
contig: 49651 intervals 9000373 bases
active: 100735 calls 0.006 user 0.004 sys 0.018 real
advance: 51084 calls 0.002 user 0.006 sys 0.022 real
calc: 100735 calls 0.000 user 0.010 sys 0.018 real
done: 1 calls 0.000 user 0.000 sys 0.002 real
execute: 1 calls 0.005 user 0.005 sys 2.709 real
fetch: 100735 calls 0.006 user 0.008 sys 0.019 real
fetch_ref: 100735 calls 0.114 user 0.061 sys 0.375 real
idle: 39 calls 0.002 user 0.007 sys 23.768 real
init: 1 calls 0.029 user 0.011 sys 0.042 real
region: 100735 calls 0.000 user 0.000 sys 0.021 real
tracker: 100735 calls 0.033 user 0.008 sys 0.090 real
overall: 236064768 mem 1.205 user 6.531 sys 3.830 real
ls: cannot access '*.g.vcf.gz': No such file or directory
ls: cannot access '*.g.vcf.gz.tbi': No such file or directory