File Info

Filename
.command.err
Full Path
s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/f5/039f5b152a06d09d8dcb56840491d7/.command.err
Size
63.3 KB
Task
DAQ:CONTROL_VARIANT_CALLING:CONTROL_SOMATIC_VC:BAM_VARIANT_CALLING_SOMATIC_STRELKA:STRELKA_SOMATIC (positive_somatic_control_1;chr1_68991-70108.bed)
Attempt

Content

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[2026-06-05T03:28:38.693008Z] [nf-f5039f5b152a06d09d8dcb56840491d7-493d6-48j6d] [756_1] [WorkflowRunner] Initiating pyFlow run
[2026-06-05T03:28:38.714655Z] [nf-f5039f5b152a06d09d8dcb56840491d7-493d6-48j6d] [756_1] [WorkflowRunner] pyFlowClientWorkflowClass: StrelkaSomaticWorkflow
[2026-06-05T03:28:38.714671Z] [nf-f5039f5b152a06d09d8dcb56840491d7-493d6-48j6d] [756_1] [WorkflowRunner] pyFlowVersion: 1.1.20
[2026-06-05T03:28:38.714677Z] [nf-f5039f5b152a06d09d8dcb56840491d7-493d6-48j6d] [756_1] [WorkflowRunner] pythonVersion: 2.7.15.final.0
[2026-06-05T03:28:38.714686Z] [nf-f5039f5b152a06d09d8dcb56840491d7-493d6-48j6d] [756_1] [WorkflowRunner] WorkingDir: '/tmp/nxf.XXXXi2AppW'
[2026-06-05T03:28:38.714692Z] [nf-f5039f5b152a06d09d8dcb56840491d7-493d6-48j6d] [756_1] [WorkflowRunner] ProcessCmdLine: '/var/tmp/strelka/runWorkflow.py -m local -j 8'
[2026-06-05T03:28:38.714699Z] [nf-f5039f5b152a06d09d8dcb56840491d7-493d6-48j6d] [756_1] [WorkflowRunner] [RunParameters] mode: local
[2026-06-05T03:28:38.714704Z] [nf-f5039f5b152a06d09d8dcb56840491d7-493d6-48j6d] [756_1] [WorkflowRunner] [RunParameters] nCores: 8
[2026-06-05T03:28:38.714709Z] [nf-f5039f5b152a06d09d8dcb56840491d7-493d6-48j6d] [756_1] [WorkflowRunner] [RunParameters] memMb: 1523801
[2026-06-05T03:28:38.714715Z] [nf-f5039f5b152a06d09d8dcb56840491d7-493d6-48j6d] [756_1] [WorkflowRunner] [RunParameters] dataDir: /var/tmp/strelka/workspace/pyflow.data
[2026-06-05T03:28:38.714720Z] [nf-f5039f5b152a06d09d8dcb56840491d7-493d6-48j6d] [756_1] [WorkflowRunner] [RunParameters] isDryRun: False
[2026-06-05T03:28:38.714724Z] [nf-f5039f5b152a06d09d8dcb56840491d7-493d6-48j6d] [756_1] [WorkflowRunner] [RunParameters] isContinue: False
[2026-06-05T03:28:38.714729Z] [nf-f5039f5b152a06d09d8dcb56840491d7-493d6-48j6d] [756_1] [WorkflowRunner] [RunParameters] isForceContinue: True
[2026-06-05T03:28:38.714735Z] [nf-f5039f5b152a06d09d8dcb56840491d7-493d6-48j6d] [756_1] [WorkflowRunner] [RunParameters] mailTo: ''
[2026-06-05T03:28:38.715101Z] [nf-f5039f5b152a06d09d8dcb56840491d7-493d6-48j6d] [756_1] [TaskRunner:masterWorkflow] Starting task specification for master workflow
[2026-06-05T03:28:38.715195Z] [nf-f5039f5b152a06d09d8dcb56840491d7-493d6-48j6d] [756_1] [StrelkaSomaticWorkflow] Initiating Strelka somatic workflow version: 2.9.10
[2026-06-05T03:28:38.722218Z] [nf-f5039f5b152a06d09d8dcb56840491d7-493d6-48j6d] [756_1] [WorkflowRunner] Adding sub-workflow task 'CallGenome' to master workflow
[2026-06-05T03:28:38.722751Z] [nf-f5039f5b152a06d09d8dcb56840491d7-493d6-48j6d] [756_1] [TaskRunner:masterWorkflow] Finished task specification for master workflow
[2026-06-05T03:28:38.722968Z] [nf-f5039f5b152a06d09d8dcb56840491d7-493d6-48j6d] [756_1] [TaskManager] Launching sub-workflow task: 'CallGenome' from master workflow
[2026-06-05T03:28:38.723152Z] [nf-f5039f5b152a06d09d8dcb56840491d7-493d6-48j6d] [756_1] [TaskRunner:CallGenome] Starting task specification for sub-workflow
[2026-06-05T03:28:38.723403Z] [nf-f5039f5b152a06d09d8dcb56840491d7-493d6-48j6d] [756_1] [WorkflowRunner] Adding command task 'CallGenome+makeTmpDir' to sub-workflow 'CallGenome'
[2026-06-05T03:28:38.723741Z] [nf-f5039f5b152a06d09d8dcb56840491d7-493d6-48j6d] [756_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0000' to sub-workflow 'CallGenome'
[2026-06-05T03:28:38.723851Z] [nf-f5039f5b152a06d09d8dcb56840491d7-493d6-48j6d] [756_1] [WorkflowRunner] Adding command task 'CallGenome+fixVcfHeader_chromId_000_chr1_0000' to sub-workflow 'CallGenome'
[2026-06-05T03:28:38.723941Z] [nf-f5039f5b152a06d09d8dcb56840491d7-493d6-48j6d] [756_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0000' to sub-workflow 'CallGenome'
[2026-06-05T03:28:38.724088Z] [nf-f5039f5b152a06d09d8dcb56840491d7-493d6-48j6d] [756_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0001' to sub-workflow 'CallGenome'
[2026-06-05T03:28:38.724170Z] [nf-f5039f5b152a06d09d8dcb56840491d7-493d6-48j6d] [756_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0001' to sub-workflow 'CallGenome'
[2026-06-05T03:28:38.724315Z] [nf-f5039f5b152a06d09d8dcb56840491d7-493d6-48j6d] [756_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0002' to sub-workflow 'CallGenome'
[2026-06-05T03:28:38.724394Z] [nf-f5039f5b152a06d09d8dcb56840491d7-493d6-48j6d] [756_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0002' to sub-workflow 'CallGenome'
[2026-06-05T03:28:38.724601Z] [nf-f5039f5b152a06d09d8dcb56840491d7-493d6-48j6d] [756_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0003' to sub-workflow 'CallGenome'
[2026-06-05T03:28:38.724932Z] [nf-f5039f5b152a06d09d8dcb56840491d7-493d6-48j6d] [756_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0003' to sub-workflow 'CallGenome'
[2026-06-05T03:28:38.725154Z] [nf-f5039f5b152a06d09d8dcb56840491d7-493d6-48j6d] [756_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0004' to sub-workflow 'CallGenome'
[2026-06-05T03:28:38.725290Z] [nf-f5039f5b152a06d09d8dcb56840491d7-493d6-48j6d] [756_1] [TaskManager] Launching command task: 'CallGenome+makeTmpDir' from sub-workflow 'CallGenome'
[2026-06-05T03:28:38.725373Z] [nf-f5039f5b152a06d09d8dcb56840491d7-493d6-48j6d] [756_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0004' to sub-workflow 'CallGenome'
[2026-06-05T03:28:38.725576Z] [nf-f5039f5b152a06d09d8dcb56840491d7-493d6-48j6d] [756_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0005' to sub-workflow 'CallGenome'
[2026-06-05T03:28:38.725728Z] [nf-f5039f5b152a06d09d8dcb56840491d7-493d6-48j6d] [756_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0005' to sub-workflow 'CallGenome'
[2026-06-05T03:28:38.726227Z] [nf-f5039f5b152a06d09d8dcb56840491d7-493d6-48j6d] [756_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0006' to sub-workflow 'CallGenome'
[2026-06-05T03:28:38.726621Z] [nf-f5039f5b152a06d09d8dcb56840491d7-493d6-48j6d] [756_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0006' to sub-workflow 'CallGenome'
[2026-06-05T03:28:38.728341Z] [nf-f5039f5b152a06d09d8dcb56840491d7-493d6-48j6d] [756_1] [TaskRunner:CallGenome+makeTmpDir] Task initiated on local node
[2026-06-05T03:28:38.728618Z] [nf-f5039f5b152a06d09d8dcb56840491d7-493d6-48j6d] [756_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0007' to sub-workflow 'CallGenome'
[2026-06-05T03:28:38.728822Z] [nf-f5039f5b152a06d09d8dcb56840491d7-493d6-48j6d] [756_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0007' to sub-workflow 'CallGenome'
[2026-06-05T03:28:38.729061Z] [nf-f5039f5b152a06d09d8dcb56840491d7-493d6-48j6d] [756_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0008' to sub-workflow 'CallGenome'
[2026-06-05T03:28:38.729157Z] [nf-f5039f5b152a06d09d8dcb56840491d7-493d6-48j6d] [756_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0008' to sub-workflow 'CallGenome'
[2026-06-05T03:28:38.729339Z] [nf-f5039f5b152a06d09d8dcb56840491d7-493d6-48j6d] [756_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0009' to sub-workflow 'CallGenome'
[2026-06-05T03:28:38.729436Z] [nf-f5039f5b152a06d09d8dcb56840491d7-493d6-48j6d] [756_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0009' to sub-workflow 'CallGenome'
[2026-06-05T03:28:38.729578Z] [nf-f5039f5b152a06d09d8dcb56840491d7-493d6-48j6d] [756_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0010' to sub-workflow 'CallGenome'
[2026-06-05T03:28:38.729672Z] [nf-f5039f5b152a06d09d8dcb56840491d7-493d6-48j6d] [756_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0010' to sub-workflow 'CallGenome'
[2026-06-05T03:28:38.730079Z] [nf-f5039f5b152a06d09d8dcb56840491d7-493d6-48j6d] [756_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0011' to sub-workflow 'CallGenome'
[2026-06-05T03:28:38.730334Z] [nf-f5039f5b152a06d09d8dcb56840491d7-493d6-48j6d] [756_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0011' to sub-workflow 'CallGenome'
[2026-06-05T03:28:38.730762Z] [nf-f5039f5b152a06d09d8dcb56840491d7-493d6-48j6d] [756_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0012' to sub-workflow 'CallGenome'
[2026-06-05T03:28:38.730865Z] [nf-f5039f5b152a06d09d8dcb56840491d7-493d6-48j6d] [756_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0012' to sub-workflow 'CallGenome'
[2026-06-05T03:28:38.731001Z] [nf-f5039f5b152a06d09d8dcb56840491d7-493d6-48j6d] [756_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0013' to sub-workflow 'CallGenome'
[2026-06-05T03:28:38.731089Z] [nf-f5039f5b152a06d09d8dcb56840491d7-493d6-48j6d] [756_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0013' to sub-workflow 'CallGenome'
[2026-06-05T03:28:38.731235Z] [nf-f5039f5b152a06d09d8dcb56840491d7-493d6-48j6d] [756_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0014' to sub-workflow 'CallGenome'
[2026-06-05T03:28:38.731311Z] [nf-f5039f5b152a06d09d8dcb56840491d7-493d6-48j6d] [756_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0014' to sub-workflow 'CallGenome'
[2026-06-05T03:28:38.731445Z] [nf-f5039f5b152a06d09d8dcb56840491d7-493d6-48j6d] [756_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0015' to sub-workflow 'CallGenome'
[2026-06-05T03:28:38.731525Z] [nf-f5039f5b152a06d09d8dcb56840491d7-493d6-48j6d] [756_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0015' to sub-workflow 'CallGenome'
[2026-06-05T03:28:38.731664Z] [nf-f5039f5b152a06d09d8dcb56840491d7-493d6-48j6d] [756_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0016' to sub-workflow 'CallGenome'
[2026-06-05T03:28:38.731800Z] [nf-f5039f5b152a06d09d8dcb56840491d7-493d6-48j6d] [756_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0016' to sub-workflow 'CallGenome'
[2026-06-05T03:28:38.732319Z] [nf-f5039f5b152a06d09d8dcb56840491d7-493d6-48j6d] [756_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0017' to sub-workflow 'CallGenome'
[2026-06-05T03:28:38.732405Z] [nf-f5039f5b152a06d09d8dcb56840491d7-493d6-48j6d] [756_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0017' to sub-workflow 'CallGenome'
[2026-06-05T03:28:38.732543Z] [nf-f5039f5b152a06d09d8dcb56840491d7-493d6-48j6d] [756_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0018' to sub-workflow 'CallGenome'
[2026-06-05T03:28:38.732617Z] [nf-f5039f5b152a06d09d8dcb56840491d7-493d6-48j6d] [756_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0018' to sub-workflow 'CallGenome'
[2026-06-05T03:28:38.732758Z] [nf-f5039f5b152a06d09d8dcb56840491d7-493d6-48j6d] [756_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0019' to sub-workflow 'CallGenome'
[2026-06-05T03:28:38.732835Z] [nf-f5039f5b152a06d09d8dcb56840491d7-493d6-48j6d] [756_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0019' to sub-workflow 'CallGenome'
[2026-06-05T03:28:38.733537Z] [nf-f5039f5b152a06d09d8dcb56840491d7-493d6-48j6d] [756_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0020' to sub-workflow 'CallGenome'
[2026-06-05T03:28:38.733991Z] [nf-f5039f5b152a06d09d8dcb56840491d7-493d6-48j6d] [756_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0020' to sub-workflow 'CallGenome'
[2026-06-05T03:28:38.734140Z] [nf-f5039f5b152a06d09d8dcb56840491d7-493d6-48j6d] [756_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0000' to sub-workflow 'CallGenome'
[2026-06-05T03:28:38.734224Z] [nf-f5039f5b152a06d09d8dcb56840491d7-493d6-48j6d] [756_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0000' to sub-workflow 'CallGenome'
[2026-06-05T03:28:38.734426Z] [nf-f5039f5b152a06d09d8dcb56840491d7-493d6-48j6d] [756_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0001' to sub-workflow 'CallGenome'
[2026-06-05T03:28:38.734507Z] [nf-f5039f5b152a06d09d8dcb56840491d7-493d6-48j6d] [756_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0001' to sub-workflow 'CallGenome'
[2026-06-05T03:28:38.734658Z] [nf-f5039f5b152a06d09d8dcb56840491d7-493d6-48j6d] [756_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0002' to sub-workflow 'CallGenome'
[2026-06-05T03:28:38.734741Z] [nf-f5039f5b152a06d09d8dcb56840491d7-493d6-48j6d] [756_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0002' to sub-workflow 'CallGenome'
[2026-06-05T03:28:38.734885Z] [nf-f5039f5b152a06d09d8dcb56840491d7-493d6-48j6d] [756_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0003' to sub-workflow 'CallGenome'
[2026-06-05T03:28:38.734963Z] [nf-f5039f5b152a06d09d8dcb56840491d7-493d6-48j6d] [756_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0003' to sub-workflow 'CallGenome'
[2026-06-05T03:28:38.735354Z] [nf-f5039f5b152a06d09d8dcb56840491d7-493d6-48j6d] [756_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0004' to sub-workflow 'CallGenome'
[2026-06-05T03:28:38.735767Z] [nf-f5039f5b152a06d09d8dcb56840491d7-493d6-48j6d] [756_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0004' to sub-workflow 'CallGenome'
[2026-06-05T03:28:38.735914Z] [nf-f5039f5b152a06d09d8dcb56840491d7-493d6-48j6d] [756_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0005' to sub-workflow 'CallGenome'
[2026-06-05T03:28:38.736000Z] [nf-f5039f5b152a06d09d8dcb56840491d7-493d6-48j6d] [756_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0005' to sub-workflow 'CallGenome'
[2026-06-05T03:28:38.736137Z] [nf-f5039f5b152a06d09d8dcb56840491d7-493d6-48j6d] [756_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0006' to sub-workflow 'CallGenome'
[2026-06-05T03:28:38.736217Z] [nf-f5039f5b152a06d09d8dcb56840491d7-493d6-48j6d] [756_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0006' to sub-workflow 'CallGenome'
[2026-06-05T03:28:38.736357Z] [nf-f5039f5b152a06d09d8dcb56840491d7-493d6-48j6d] [756_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0007' to sub-workflow 'CallGenome'
[2026-06-05T03:28:38.736435Z] [nf-f5039f5b152a06d09d8dcb56840491d7-493d6-48j6d] [756_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0007' to sub-workflow 'CallGenome'
[2026-06-05T03:28:38.736573Z] [nf-f5039f5b152a06d09d8dcb56840491d7-493d6-48j6d] [756_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0008' to sub-workflow 'CallGenome'
[2026-06-05T03:28:38.736650Z] [nf-f5039f5b152a06d09d8dcb56840491d7-493d6-48j6d] [756_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0008' to sub-workflow 'CallGenome'
[2026-06-05T03:28:38.736795Z] [nf-f5039f5b152a06d09d8dcb56840491d7-493d6-48j6d] [756_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0009' to sub-workflow 'CallGenome'
[2026-06-05T03:28:38.737060Z] [nf-f5039f5b152a06d09d8dcb56840491d7-493d6-48j6d] [756_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0009' to sub-workflow 'CallGenome'
[2026-06-05T03:28:38.737663Z] [nf-f5039f5b152a06d09d8dcb56840491d7-493d6-48j6d] [756_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0010' to sub-workflow 'CallGenome'
[2026-06-05T03:28:38.737745Z] [nf-f5039f5b152a06d09d8dcb56840491d7-493d6-48j6d] [756_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0010' to sub-workflow 'CallGenome'
[2026-06-05T03:28:38.754812Z] [nf-f5039f5b152a06d09d8dcb56840491d7-493d6-48j6d] [756_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0011' to sub-workflow 'CallGenome'
[2026-06-05T03:28:38.755365Z] [nf-f5039f5b152a06d09d8dcb56840491d7-493d6-48j6d] [756_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0011' to sub-workflow 'CallGenome'
[2026-06-05T03:28:38.755459Z] [nf-f5039f5b152a06d09d8dcb56840491d7-493d6-48j6d] [756_1] [WorkflowRunner] Adding command task 'CallGenome+completedAllGenomeSegments' to sub-workflow 'CallGenome'
[2026-06-05T03:28:38.755652Z] [nf-f5039f5b152a06d09d8dcb56840491d7-493d6-48j6d] [756_1] [WorkflowRunner] Adding command task 'CallGenome+SNV_concat_vcf' to sub-workflow 'CallGenome'
[2026-06-05T03:28:38.755823Z] [nf-f5039f5b152a06d09d8dcb56840491d7-493d6-48j6d] [756_1] [WorkflowRunner] Adding command task 'CallGenome+SNV_index_vcf' to sub-workflow 'CallGenome'
[2026-06-05T03:28:38.755978Z] [nf-f5039f5b152a06d09d8dcb56840491d7-493d6-48j6d] [756_1] [WorkflowRunner] Adding command task 'CallGenome+Indel_concat_vcf' to sub-workflow 'CallGenome'
[2026-06-05T03:28:38.756149Z] [nf-f5039f5b152a06d09d8dcb56840491d7-493d6-48j6d] [756_1] [WorkflowRunner] Adding command task 'CallGenome+Indel_index_vcf' to sub-workflow 'CallGenome'
[2026-06-05T03:28:38.757384Z] [nf-f5039f5b152a06d09d8dcb56840491d7-493d6-48j6d] [756_1] [TaskManager] Completed command task: 'CallGenome+makeTmpDir' launched from sub-workflow 'CallGenome'
[2026-06-05T03:28:38.757897Z] [nf-f5039f5b152a06d09d8dcb56840491d7-493d6-48j6d] [756_1] [WorkflowRunner] Adding command task 'CallGenome+mergeRunStats' to sub-workflow 'CallGenome'
[2026-06-05T03:28:38.758578Z] [nf-f5039f5b152a06d09d8dcb56840491d7-493d6-48j6d] [756_1] [WorkflowRunner] Adding command task 'CallGenome+removeTmpDir' to sub-workflow 'CallGenome'
[2026-06-05T03:28:38.758691Z] [nf-f5039f5b152a06d09d8dcb56840491d7-493d6-48j6d] [756_1] [TaskRunner:CallGenome] Finished task specification for sub-workflow
[2026-06-05T03:28:38.758787Z] [nf-f5039f5b152a06d09d8dcb56840491d7-493d6-48j6d] [756_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0004' from sub-workflow 'CallGenome'
[2026-06-05T03:28:38.759641Z] [nf-f5039f5b152a06d09d8dcb56840491d7-493d6-48j6d] [756_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0014' from sub-workflow 'CallGenome'
[2026-06-05T03:28:38.760440Z] [nf-f5039f5b152a06d09d8dcb56840491d7-493d6-48j6d] [756_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0008' from sub-workflow 'CallGenome'
[2026-06-05T03:28:38.760971Z] [nf-f5039f5b152a06d09d8dcb56840491d7-493d6-48j6d] [756_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0006' from sub-workflow 'CallGenome'
[2026-06-05T03:28:38.761684Z] [nf-f5039f5b152a06d09d8dcb56840491d7-493d6-48j6d] [756_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0013' from sub-workflow 'CallGenome'
[2026-06-05T03:28:38.762401Z] [nf-f5039f5b152a06d09d8dcb56840491d7-493d6-48j6d] [756_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0010' from sub-workflow 'CallGenome'
[2026-06-05T03:28:38.763348Z] [nf-f5039f5b152a06d09d8dcb56840491d7-493d6-48j6d] [756_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0005' from sub-workflow 'CallGenome'
[2026-06-05T03:28:38.763892Z] [nf-f5039f5b152a06d09d8dcb56840491d7-493d6-48j6d] [756_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0003' from sub-workflow 'CallGenome'
[2026-06-05T03:28:38.768229Z] [nf-f5039f5b152a06d09d8dcb56840491d7-493d6-48j6d] [756_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0004] Task initiated on local node
[2026-06-05T03:28:38.772535Z] [nf-f5039f5b152a06d09d8dcb56840491d7-493d6-48j6d] [756_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0014] Task initiated on local node
[2026-06-05T03:28:38.776165Z] [nf-f5039f5b152a06d09d8dcb56840491d7-493d6-48j6d] [756_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0006] Task initiated on local node
[2026-06-05T03:28:38.780341Z] [nf-f5039f5b152a06d09d8dcb56840491d7-493d6-48j6d] [756_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0008] Task initiated on local node
[2026-06-05T03:28:38.780775Z] [nf-f5039f5b152a06d09d8dcb56840491d7-493d6-48j6d] [756_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0005] Task initiated on local node
[2026-06-05T03:28:38.784630Z] [nf-f5039f5b152a06d09d8dcb56840491d7-493d6-48j6d] [756_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0013] Task initiated on local node
[2026-06-05T03:28:38.787231Z] [nf-f5039f5b152a06d09d8dcb56840491d7-493d6-48j6d] [756_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0003] Task initiated on local node
[2026-06-05T03:28:38.898845Z] [nf-f5039f5b152a06d09d8dcb56840491d7-493d6-48j6d] [756_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0008' launched from sub-workflow 'CallGenome'
[2026-06-05T03:28:38.899706Z] [nf-f5039f5b152a06d09d8dcb56840491d7-493d6-48j6d] [756_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0009' from sub-workflow 'CallGenome'
[2026-06-05T03:28:38.902760Z] [nf-f5039f5b152a06d09d8dcb56840491d7-493d6-48j6d] [756_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0009] Task initiated on local node
[2026-06-05T03:28:39.464426Z] [nf-f5039f5b152a06d09d8dcb56840491d7-493d6-48j6d] [756_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0003' launched from sub-workflow 'CallGenome'
[2026-06-05T03:28:39.465333Z] [nf-f5039f5b152a06d09d8dcb56840491d7-493d6-48j6d] [756_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0019' from sub-workflow 'CallGenome'
[2026-06-05T03:28:39.468245Z] [nf-f5039f5b152a06d09d8dcb56840491d7-493d6-48j6d] [756_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0019] Task initiated on local node
[2026-06-05T03:28:39.679458Z] [nf-f5039f5b152a06d09d8dcb56840491d7-493d6-48j6d] [756_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0005' launched from sub-workflow 'CallGenome'
[2026-06-05T03:28:39.680330Z] [nf-f5039f5b152a06d09d8dcb56840491d7-493d6-48j6d] [756_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0001' from sub-workflow 'CallGenome'
[2026-06-05T03:28:39.683219Z] [nf-f5039f5b152a06d09d8dcb56840491d7-493d6-48j6d] [756_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0001] Task initiated on local node
[2026-06-05T03:28:40.695808Z] [nf-f5039f5b152a06d09d8dcb56840491d7-493d6-48j6d] [756_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0004' launched from sub-workflow 'CallGenome'
[2026-06-05T03:28:40.695898Z] [nf-f5039f5b152a06d09d8dcb56840491d7-493d6-48j6d] [756_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0006' launched from sub-workflow 'CallGenome'
[2026-06-05T03:28:40.696737Z] [nf-f5039f5b152a06d09d8dcb56840491d7-493d6-48j6d] [756_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0017' from sub-workflow 'CallGenome'
[2026-06-05T03:28:40.696987Z] [nf-f5039f5b152a06d09d8dcb56840491d7-493d6-48j6d] [756_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0006' from sub-workflow 'CallGenome'
[2026-06-05T03:28:40.700912Z] [nf-f5039f5b152a06d09d8dcb56840491d7-493d6-48j6d] [756_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0006] Task initiated on local node
[2026-06-05T03:28:40.702194Z] [nf-f5039f5b152a06d09d8dcb56840491d7-493d6-48j6d] [756_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0017] Task initiated on local node
[2026-06-05T03:28:40.761677Z] [nf-f5039f5b152a06d09d8dcb56840491d7-493d6-48j6d] [756_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0006' launched from sub-workflow 'CallGenome'
[2026-06-05T03:28:40.762535Z] [nf-f5039f5b152a06d09d8dcb56840491d7-493d6-48j6d] [756_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0000' from sub-workflow 'CallGenome'
[2026-06-05T03:28:40.765657Z] [nf-f5039f5b152a06d09d8dcb56840491d7-493d6-48j6d] [756_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0000] Task initiated on local node
[2026-06-05T03:28:40.976929Z] [nf-f5039f5b152a06d09d8dcb56840491d7-493d6-48j6d] [756_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0014' launched from sub-workflow 'CallGenome'
[2026-06-05T03:28:40.977876Z] [nf-f5039f5b152a06d09d8dcb56840491d7-493d6-48j6d] [756_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0002' from sub-workflow 'CallGenome'
[2026-06-05T03:28:40.981644Z] [nf-f5039f5b152a06d09d8dcb56840491d7-493d6-48j6d] [756_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0002] Task initiated on local node
[2026-06-05T03:28:41.342774Z] [nf-f5039f5b152a06d09d8dcb56840491d7-493d6-48j6d] [756_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0009' launched from sub-workflow 'CallGenome'
[2026-06-05T03:28:41.343900Z] [nf-f5039f5b152a06d09d8dcb56840491d7-493d6-48j6d] [756_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0006' from sub-workflow 'CallGenome'
[2026-06-05T03:28:41.347473Z] [nf-f5039f5b152a06d09d8dcb56840491d7-493d6-48j6d] [756_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0006] Task initiated on local node
[2026-06-05T03:28:41.489167Z] [nf-f5039f5b152a06d09d8dcb56840491d7-493d6-48j6d] [756_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0010] Task initiated on local node
[2026-06-05T03:28:41.508418Z] [nf-f5039f5b152a06d09d8dcb56840491d7-493d6-48j6d] [756_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0010' launched from sub-workflow 'CallGenome'
[2026-06-05T03:28:41.508499Z] [nf-f5039f5b152a06d09d8dcb56840491d7-493d6-48j6d] [756_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0013' launched from sub-workflow 'CallGenome'
[2026-06-05T03:28:41.509321Z] [nf-f5039f5b152a06d09d8dcb56840491d7-493d6-48j6d] [756_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0005' from sub-workflow 'CallGenome'
[2026-06-05T03:28:41.509603Z] [nf-f5039f5b152a06d09d8dcb56840491d7-493d6-48j6d] [756_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0016' from sub-workflow 'CallGenome'
[2026-06-05T03:28:41.513213Z] [nf-f5039f5b152a06d09d8dcb56840491d7-493d6-48j6d] [756_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0005] Task initiated on local node
[2026-06-05T03:28:41.514525Z] [nf-f5039f5b152a06d09d8dcb56840491d7-493d6-48j6d] [756_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0016] Task initiated on local node
[2026-06-05T03:28:41.573887Z] [nf-f5039f5b152a06d09d8dcb56840491d7-493d6-48j6d] [756_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0005' launched from sub-workflow 'CallGenome'
[2026-06-05T03:28:41.574789Z] [nf-f5039f5b152a06d09d8dcb56840491d7-493d6-48j6d] [756_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0001' from sub-workflow 'CallGenome'
[2026-06-05T03:28:41.578218Z] [nf-f5039f5b152a06d09d8dcb56840491d7-493d6-48j6d] [756_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0001] Task initiated on local node
[2026-06-05T03:28:42.140000Z] [nf-f5039f5b152a06d09d8dcb56840491d7-493d6-48j6d] [756_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0000' launched from sub-workflow 'CallGenome'
[2026-06-05T03:28:42.140845Z] [nf-f5039f5b152a06d09d8dcb56840491d7-493d6-48j6d] [756_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0004' from sub-workflow 'CallGenome'
[2026-06-05T03:28:42.144104Z] [nf-f5039f5b152a06d09d8dcb56840491d7-493d6-48j6d] [756_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0004] Task initiated on local node
[2026-06-05T03:28:42.205031Z] [nf-f5039f5b152a06d09d8dcb56840491d7-493d6-48j6d] [756_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0004' launched from sub-workflow 'CallGenome'
[2026-06-05T03:28:42.205821Z] [nf-f5039f5b152a06d09d8dcb56840491d7-493d6-48j6d] [756_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0014' from sub-workflow 'CallGenome'
[2026-06-05T03:28:42.209373Z] [nf-f5039f5b152a06d09d8dcb56840491d7-493d6-48j6d] [756_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0014] Task initiated on local node
[2026-06-05T03:28:42.213751Z] [nf-f5039f5b152a06d09d8dcb56840491d7-493d6-48j6d] [756_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0019' launched from sub-workflow 'CallGenome'
[2026-06-05T03:28:42.214575Z] [nf-f5039f5b152a06d09d8dcb56840491d7-493d6-48j6d] [756_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0019' from sub-workflow 'CallGenome'
[2026-06-05T03:28:42.217413Z] [nf-f5039f5b152a06d09d8dcb56840491d7-493d6-48j6d] [756_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0019] Task initiated on local node
[2026-06-05T03:28:42.246427Z] [nf-f5039f5b152a06d09d8dcb56840491d7-493d6-48j6d] [756_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0014' launched from sub-workflow 'CallGenome'
[2026-06-05T03:28:42.247191Z] [nf-f5039f5b152a06d09d8dcb56840491d7-493d6-48j6d] [756_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0003' from sub-workflow 'CallGenome'
[2026-06-05T03:28:42.250037Z] [nf-f5039f5b152a06d09d8dcb56840491d7-493d6-48j6d] [756_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0003] Task initiated on local node
[2026-06-05T03:28:42.263028Z] [nf-f5039f5b152a06d09d8dcb56840491d7-493d6-48j6d] [756_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0019' launched from sub-workflow 'CallGenome'
[2026-06-05T03:28:42.263769Z] [nf-f5039f5b152a06d09d8dcb56840491d7-493d6-48j6d] [756_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0000' from sub-workflow 'CallGenome'
[2026-06-05T03:28:42.266331Z] [nf-f5039f5b152a06d09d8dcb56840491d7-493d6-48j6d] [756_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0000] Task initiated on local node
[2026-06-05T03:28:42.327749Z] [nf-f5039f5b152a06d09d8dcb56840491d7-493d6-48j6d] [756_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0000' launched from sub-workflow 'CallGenome'
[2026-06-05T03:28:42.327838Z] [nf-f5039f5b152a06d09d8dcb56840491d7-493d6-48j6d] [756_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0003' launched from sub-workflow 'CallGenome'
[2026-06-05T03:28:42.328657Z] [nf-f5039f5b152a06d09d8dcb56840491d7-493d6-48j6d] [756_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0012' from sub-workflow 'CallGenome'
[2026-06-05T03:28:42.328999Z] [nf-f5039f5b152a06d09d8dcb56840491d7-493d6-48j6d] [756_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0018' from sub-workflow 'CallGenome'
[2026-06-05T03:28:42.332911Z] [nf-f5039f5b152a06d09d8dcb56840491d7-493d6-48j6d] [756_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0012] Task initiated on local node
[2026-06-05T03:28:42.334100Z] [nf-f5039f5b152a06d09d8dcb56840491d7-493d6-48j6d] [756_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0018] Task initiated on local node
[2026-06-05T03:28:42.694307Z] [nf-f5039f5b152a06d09d8dcb56840491d7-493d6-48j6d] [756_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0006' launched from sub-workflow 'CallGenome'
[2026-06-05T03:28:42.695164Z] [nf-f5039f5b152a06d09d8dcb56840491d7-493d6-48j6d] [756_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0006' from sub-workflow 'CallGenome'
[2026-06-05T03:28:42.698304Z] [nf-f5039f5b152a06d09d8dcb56840491d7-493d6-48j6d] [756_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0006] Task initiated on local node
[2026-06-05T03:28:42.759245Z] [nf-f5039f5b152a06d09d8dcb56840491d7-493d6-48j6d] [756_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0006' launched from sub-workflow 'CallGenome'
[2026-06-05T03:28:42.760078Z] [nf-f5039f5b152a06d09d8dcb56840491d7-493d6-48j6d] [756_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0007' from sub-workflow 'CallGenome'
[2026-06-05T03:28:42.763250Z] [nf-f5039f5b152a06d09d8dcb56840491d7-493d6-48j6d] [756_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0007] Task initiated on local node
[2026-06-05T03:28:43.074679Z] [nf-f5039f5b152a06d09d8dcb56840491d7-493d6-48j6d] [756_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0016' launched from sub-workflow 'CallGenome'
[2026-06-05T03:28:43.075544Z] [nf-f5039f5b152a06d09d8dcb56840491d7-493d6-48j6d] [756_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0010' from sub-workflow 'CallGenome'
[2026-06-05T03:28:43.078732Z] [nf-f5039f5b152a06d09d8dcb56840491d7-493d6-48j6d] [756_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0010] Task initiated on local node
[2026-06-05T03:28:43.091559Z] [nf-f5039f5b152a06d09d8dcb56840491d7-493d6-48j6d] [756_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0001' launched from sub-workflow 'CallGenome'
[2026-06-05T03:28:43.092302Z] [nf-f5039f5b152a06d09d8dcb56840491d7-493d6-48j6d] [756_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0001' from sub-workflow 'CallGenome'
[2026-06-05T03:28:43.095582Z] [nf-f5039f5b152a06d09d8dcb56840491d7-493d6-48j6d] [756_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0001] Task initiated on local node
[2026-06-05T03:28:43.124334Z] [nf-f5039f5b152a06d09d8dcb56840491d7-493d6-48j6d] [756_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0010' launched from sub-workflow 'CallGenome'
[2026-06-05T03:28:43.125136Z] [nf-f5039f5b152a06d09d8dcb56840491d7-493d6-48j6d] [756_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0016' from sub-workflow 'CallGenome'
[2026-06-05T03:28:43.128050Z] [nf-f5039f5b152a06d09d8dcb56840491d7-493d6-48j6d] [756_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0016] Task initiated on local node
[2026-06-05T03:28:43.132915Z] [nf-f5039f5b152a06d09d8dcb56840491d7-493d6-48j6d] [756_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0001' launched from sub-workflow 'CallGenome'
[2026-06-05T03:28:43.133631Z] [nf-f5039f5b152a06d09d8dcb56840491d7-493d6-48j6d] [756_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0003' from sub-workflow 'CallGenome'
[2026-06-05T03:28:43.136547Z] [nf-f5039f5b152a06d09d8dcb56840491d7-493d6-48j6d] [756_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0003] Task initiated on local node
[2026-06-05T03:28:43.165578Z] [nf-f5039f5b152a06d09d8dcb56840491d7-493d6-48j6d] [756_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0016' launched from sub-workflow 'CallGenome'
[2026-06-05T03:28:43.166362Z] [nf-f5039f5b152a06d09d8dcb56840491d7-493d6-48j6d] [756_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0010' from sub-workflow 'CallGenome'
[2026-06-05T03:28:43.169915Z] [nf-f5039f5b152a06d09d8dcb56840491d7-493d6-48j6d] [756_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0010] Task initiated on local node
[2026-06-05T03:28:43.831799Z] [nf-f5039f5b152a06d09d8dcb56840491d7-493d6-48j6d] [756_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0010' launched from sub-workflow 'CallGenome'
[2026-06-05T03:28:43.832925Z] [nf-f5039f5b152a06d09d8dcb56840491d7-493d6-48j6d] [756_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0010' from sub-workflow 'CallGenome'
[2026-06-05T03:28:43.835946Z] [nf-f5039f5b152a06d09d8dcb56840491d7-493d6-48j6d] [756_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0010] Task initiated on local node
[2026-06-05T03:28:43.865271Z] [nf-f5039f5b152a06d09d8dcb56840491d7-493d6-48j6d] [756_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0010' launched from sub-workflow 'CallGenome'
[2026-06-05T03:28:43.866496Z] [nf-f5039f5b152a06d09d8dcb56840491d7-493d6-48j6d] [756_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0011' from sub-workflow 'CallGenome'
[2026-06-05T03:28:43.869515Z] [nf-f5039f5b152a06d09d8dcb56840491d7-493d6-48j6d] [756_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0011] Task initiated on local node
[2026-06-05T03:28:43.980976Z] [nf-f5039f5b152a06d09d8dcb56840491d7-493d6-48j6d] [756_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0017' launched from sub-workflow 'CallGenome'
[2026-06-05T03:28:43.981054Z] [nf-f5039f5b152a06d09d8dcb56840491d7-493d6-48j6d] [756_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0011' launched from sub-workflow 'CallGenome'
[2026-06-05T03:28:43.981796Z] [nf-f5039f5b152a06d09d8dcb56840491d7-493d6-48j6d] [756_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0011' from sub-workflow 'CallGenome'
[2026-06-05T03:28:43.982148Z] [nf-f5039f5b152a06d09d8dcb56840491d7-493d6-48j6d] [756_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0015' from sub-workflow 'CallGenome'
[2026-06-05T03:28:43.985885Z] [nf-f5039f5b152a06d09d8dcb56840491d7-493d6-48j6d] [756_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0011] Task initiated on local node
[2026-06-05T03:28:43.986809Z] [nf-f5039f5b152a06d09d8dcb56840491d7-493d6-48j6d] [756_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0015] Task initiated on local node
[2026-06-05T03:28:44.046593Z] [nf-f5039f5b152a06d09d8dcb56840491d7-493d6-48j6d] [756_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0011' launched from sub-workflow 'CallGenome'
[2026-06-05T03:28:44.047363Z] [nf-f5039f5b152a06d09d8dcb56840491d7-493d6-48j6d] [756_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0000' from sub-workflow 'CallGenome'
[2026-06-05T03:28:44.051108Z] [nf-f5039f5b152a06d09d8dcb56840491d7-493d6-48j6d] [756_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0000] Task initiated on local node
[2026-06-05T03:28:44.262121Z] [nf-f5039f5b152a06d09d8dcb56840491d7-493d6-48j6d] [756_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0001' launched from sub-workflow 'CallGenome'
[2026-06-05T03:28:44.262931Z] [nf-f5039f5b152a06d09d8dcb56840491d7-493d6-48j6d] [756_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0007' from sub-workflow 'CallGenome'
[2026-06-05T03:28:44.266108Z] [nf-f5039f5b152a06d09d8dcb56840491d7-493d6-48j6d] [756_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0007] Task initiated on local node
[2026-06-05T03:28:44.377312Z] [nf-f5039f5b152a06d09d8dcb56840491d7-493d6-48j6d] [756_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0007' launched from sub-workflow 'CallGenome'
[2026-06-05T03:28:44.377418Z] [nf-f5039f5b152a06d09d8dcb56840491d7-493d6-48j6d] [756_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0018' launched from sub-workflow 'CallGenome'
[2026-06-05T03:28:44.378129Z] [nf-f5039f5b152a06d09d8dcb56840491d7-493d6-48j6d] [756_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0001' from sub-workflow 'CallGenome'
[2026-06-05T03:28:44.378489Z] [nf-f5039f5b152a06d09d8dcb56840491d7-493d6-48j6d] [756_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0009' from sub-workflow 'CallGenome'
[2026-06-05T03:28:44.382119Z] [nf-f5039f5b152a06d09d8dcb56840491d7-493d6-48j6d] [756_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0001] Task initiated on local node
[2026-06-05T03:28:44.382910Z] [nf-f5039f5b152a06d09d8dcb56840491d7-493d6-48j6d] [756_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0009] Task initiated on local node
[2026-06-05T03:28:44.442826Z] [nf-f5039f5b152a06d09d8dcb56840491d7-493d6-48j6d] [756_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0001' launched from sub-workflow 'CallGenome'
[2026-06-05T03:28:44.442926Z] [nf-f5039f5b152a06d09d8dcb56840491d7-493d6-48j6d] [756_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0009' launched from sub-workflow 'CallGenome'
[2026-06-05T03:28:44.443565Z] [nf-f5039f5b152a06d09d8dcb56840491d7-493d6-48j6d] [756_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0018' from sub-workflow 'CallGenome'
[2026-06-05T03:28:44.443860Z] [nf-f5039f5b152a06d09d8dcb56840491d7-493d6-48j6d] [756_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0004' from sub-workflow 'CallGenome'
[2026-06-05T03:28:44.447495Z] [nf-f5039f5b152a06d09d8dcb56840491d7-493d6-48j6d] [756_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0018] Task initiated on local node
[2026-06-05T03:28:44.448608Z] [nf-f5039f5b152a06d09d8dcb56840491d7-493d6-48j6d] [756_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0004] Task initiated on local node
[2026-06-05T03:28:44.508291Z] [nf-f5039f5b152a06d09d8dcb56840491d7-493d6-48j6d] [756_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0002' launched from sub-workflow 'CallGenome'
[2026-06-05T03:28:44.508375Z] [nf-f5039f5b152a06d09d8dcb56840491d7-493d6-48j6d] [756_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0018' launched from sub-workflow 'CallGenome'
[2026-06-05T03:28:44.509048Z] [nf-f5039f5b152a06d09d8dcb56840491d7-493d6-48j6d] [756_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0008' from sub-workflow 'CallGenome'
[2026-06-05T03:28:44.509347Z] [nf-f5039f5b152a06d09d8dcb56840491d7-493d6-48j6d] [756_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0013' from sub-workflow 'CallGenome'
[2026-06-05T03:28:44.513175Z] [nf-f5039f5b152a06d09d8dcb56840491d7-493d6-48j6d] [756_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0013] Task initiated on local node
[2026-06-05T03:28:44.514027Z] [nf-f5039f5b152a06d09d8dcb56840491d7-493d6-48j6d] [756_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0008] Task initiated on local node
[2026-06-05T03:28:44.573959Z] [nf-f5039f5b152a06d09d8dcb56840491d7-493d6-48j6d] [756_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0008' launched from sub-workflow 'CallGenome'
[2026-06-05T03:28:44.574042Z] [nf-f5039f5b152a06d09d8dcb56840491d7-493d6-48j6d] [756_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0013' launched from sub-workflow 'CallGenome'
[2026-06-05T03:28:44.574680Z] [nf-f5039f5b152a06d09d8dcb56840491d7-493d6-48j6d] [756_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0005' from sub-workflow 'CallGenome'
[2026-06-05T03:28:44.575022Z] [nf-f5039f5b152a06d09d8dcb56840491d7-493d6-48j6d] [756_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0007' from sub-workflow 'CallGenome'
[2026-06-05T03:28:44.578791Z] [nf-f5039f5b152a06d09d8dcb56840491d7-493d6-48j6d] [756_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0007] Task initiated on local node
[2026-06-05T03:28:44.580015Z] [nf-f5039f5b152a06d09d8dcb56840491d7-493d6-48j6d] [756_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0005] Task initiated on local node
[2026-06-05T03:28:44.639507Z] [nf-f5039f5b152a06d09d8dcb56840491d7-493d6-48j6d] [756_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0007' launched from sub-workflow 'CallGenome'
[2026-06-05T03:28:44.640161Z] [nf-f5039f5b152a06d09d8dcb56840491d7-493d6-48j6d] [756_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0020' from sub-workflow 'CallGenome'
[2026-06-05T03:28:44.643262Z] [nf-f5039f5b152a06d09d8dcb56840491d7-493d6-48j6d] [756_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0020] Task initiated on local node
[2026-06-05T03:28:45.004946Z] [nf-f5039f5b152a06d09d8dcb56840491d7-493d6-48j6d] [756_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0012' launched from sub-workflow 'CallGenome'
[2026-06-05T03:28:45.005627Z] [nf-f5039f5b152a06d09d8dcb56840491d7-493d6-48j6d] [756_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0012' from sub-workflow 'CallGenome'
[2026-06-05T03:28:45.008467Z] [nf-f5039f5b152a06d09d8dcb56840491d7-493d6-48j6d] [756_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0012] Task initiated on local node
[2026-06-05T03:28:45.069501Z] [nf-f5039f5b152a06d09d8dcb56840491d7-493d6-48j6d] [756_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0012' launched from sub-workflow 'CallGenome'
[2026-06-05T03:28:45.070072Z] [nf-f5039f5b152a06d09d8dcb56840491d7-493d6-48j6d] [756_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0017' from sub-workflow 'CallGenome'
[2026-06-05T03:28:45.073317Z] [nf-f5039f5b152a06d09d8dcb56840491d7-493d6-48j6d] [756_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0017] Task initiated on local node
[2026-06-05T03:28:45.134386Z] [nf-f5039f5b152a06d09d8dcb56840491d7-493d6-48j6d] [756_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0017' launched from sub-workflow 'CallGenome'
[2026-06-05T03:28:45.135316Z] [nf-f5039f5b152a06d09d8dcb56840491d7-493d6-48j6d] [756_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0002' from sub-workflow 'CallGenome'
[2026-06-05T03:28:45.138880Z] [nf-f5039f5b152a06d09d8dcb56840491d7-493d6-48j6d] [756_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0002] Task initiated on local node
[2026-06-05T03:28:45.249936Z] [nf-f5039f5b152a06d09d8dcb56840491d7-493d6-48j6d] [756_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0007' launched from sub-workflow 'CallGenome'
[2026-06-05T03:28:45.250927Z] [nf-f5039f5b152a06d09d8dcb56840491d7-493d6-48j6d] [756_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0011' from sub-workflow 'CallGenome'
[2026-06-05T03:28:45.254193Z] [nf-f5039f5b152a06d09d8dcb56840491d7-493d6-48j6d] [756_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0011] Task initiated on local node
[2026-06-05T03:28:45.365630Z] [nf-f5039f5b152a06d09d8dcb56840491d7-493d6-48j6d] [756_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0011' launched from sub-workflow 'CallGenome'
[2026-06-05T03:28:45.366961Z] [nf-f5039f5b152a06d09d8dcb56840491d7-493d6-48j6d] [756_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0008' from sub-workflow 'CallGenome'
[2026-06-05T03:28:45.370083Z] [nf-f5039f5b152a06d09d8dcb56840491d7-493d6-48j6d] [756_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0008] Task initiated on local node
[2026-06-05T03:28:46.333089Z] [nf-f5039f5b152a06d09d8dcb56840491d7-493d6-48j6d] [756_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0015' launched from sub-workflow 'CallGenome'
[2026-06-05T03:28:46.333800Z] [nf-f5039f5b152a06d09d8dcb56840491d7-493d6-48j6d] [756_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0002' from sub-workflow 'CallGenome'
[2026-06-05T03:28:46.337170Z] [nf-f5039f5b152a06d09d8dcb56840491d7-493d6-48j6d] [756_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0002] Task initiated on local node
[2026-06-05T03:28:46.398215Z] [nf-f5039f5b152a06d09d8dcb56840491d7-493d6-48j6d] [756_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0002' launched from sub-workflow 'CallGenome'
[2026-06-05T03:28:46.399116Z] [nf-f5039f5b152a06d09d8dcb56840491d7-493d6-48j6d] [756_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0011' from sub-workflow 'CallGenome'
[2026-06-05T03:28:46.402477Z] [nf-f5039f5b152a06d09d8dcb56840491d7-493d6-48j6d] [756_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0011] Task initiated on local node
[2026-06-05T03:28:46.431415Z] [nf-f5039f5b152a06d09d8dcb56840491d7-493d6-48j6d] [756_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0004' launched from sub-workflow 'CallGenome'
[2026-06-05T03:28:46.432267Z] [nf-f5039f5b152a06d09d8dcb56840491d7-493d6-48j6d] [756_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0004' from sub-workflow 'CallGenome'
[2026-06-05T03:28:46.435464Z] [nf-f5039f5b152a06d09d8dcb56840491d7-493d6-48j6d] [756_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0004] Task initiated on local node
[2026-06-05T03:28:46.436187Z] [nf-f5039f5b152a06d09d8dcb56840491d7-493d6-48j6d] [756_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0011' launched from sub-workflow 'CallGenome'
[2026-06-05T03:28:46.437063Z] [nf-f5039f5b152a06d09d8dcb56840491d7-493d6-48j6d] [756_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0007' from sub-workflow 'CallGenome'
[2026-06-05T03:28:46.440085Z] [nf-f5039f5b152a06d09d8dcb56840491d7-493d6-48j6d] [756_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0007] Task initiated on local node
[2026-06-05T03:28:46.469112Z] [nf-f5039f5b152a06d09d8dcb56840491d7-493d6-48j6d] [756_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0007' launched from sub-workflow 'CallGenome'
[2026-06-05T03:28:46.469252Z] [nf-f5039f5b152a06d09d8dcb56840491d7-493d6-48j6d] [756_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0004' launched from sub-workflow 'CallGenome'
[2026-06-05T03:28:46.470042Z] [nf-f5039f5b152a06d09d8dcb56840491d7-493d6-48j6d] [756_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0015' from sub-workflow 'CallGenome'
[2026-06-05T03:28:46.470346Z] [nf-f5039f5b152a06d09d8dcb56840491d7-493d6-48j6d] [756_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0009' from sub-workflow 'CallGenome'
[2026-06-05T03:28:46.474029Z] [nf-f5039f5b152a06d09d8dcb56840491d7-493d6-48j6d] [756_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0015] Task initiated on local node
[2026-06-05T03:28:46.475273Z] [nf-f5039f5b152a06d09d8dcb56840491d7-493d6-48j6d] [756_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0009] Task initiated on local node
[2026-06-05T03:28:46.534765Z] [nf-f5039f5b152a06d09d8dcb56840491d7-493d6-48j6d] [756_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0015' launched from sub-workflow 'CallGenome'
[2026-06-05T03:28:46.536631Z] [nf-f5039f5b152a06d09d8dcb56840491d7-493d6-48j6d] [756_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0009' launched from sub-workflow 'CallGenome'
[2026-06-05T03:28:46.537345Z] [nf-f5039f5b152a06d09d8dcb56840491d7-493d6-48j6d] [756_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0009' from sub-workflow 'CallGenome'
[2026-06-05T03:28:46.540303Z] [nf-f5039f5b152a06d09d8dcb56840491d7-493d6-48j6d] [756_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0009] Task initiated on local node
[2026-06-05T03:28:46.601621Z] [nf-f5039f5b152a06d09d8dcb56840491d7-493d6-48j6d] [756_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0009' launched from sub-workflow 'CallGenome'
[2026-06-05T03:28:46.816234Z] [nf-f5039f5b152a06d09d8dcb56840491d7-493d6-48j6d] [756_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0008' launched from sub-workflow 'CallGenome'
[2026-06-05T03:28:46.817035Z] [nf-f5039f5b152a06d09d8dcb56840491d7-493d6-48j6d] [756_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0008' from sub-workflow 'CallGenome'
[2026-06-05T03:28:46.820010Z] [nf-f5039f5b152a06d09d8dcb56840491d7-493d6-48j6d] [756_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0008] Task initiated on local node
[2026-06-05T03:28:46.881420Z] [nf-f5039f5b152a06d09d8dcb56840491d7-493d6-48j6d] [756_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0008' launched from sub-workflow 'CallGenome'
[2026-06-05T03:28:46.885406Z] [nf-f5039f5b152a06d09d8dcb56840491d7-493d6-48j6d] [756_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0003' launched from sub-workflow 'CallGenome'
[2026-06-05T03:28:46.886137Z] [nf-f5039f5b152a06d09d8dcb56840491d7-493d6-48j6d] [756_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0003' from sub-workflow 'CallGenome'
[2026-06-05T03:28:46.889345Z] [nf-f5039f5b152a06d09d8dcb56840491d7-493d6-48j6d] [756_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0003] Task initiated on local node
[2026-06-05T03:28:46.950319Z] [nf-f5039f5b152a06d09d8dcb56840491d7-493d6-48j6d] [756_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0003' launched from sub-workflow 'CallGenome'
[2026-06-05T03:28:47.114923Z] [nf-f5039f5b152a06d09d8dcb56840491d7-493d6-48j6d] [756_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0000' launched from sub-workflow 'CallGenome'
[2026-06-05T03:28:47.115702Z] [nf-f5039f5b152a06d09d8dcb56840491d7-493d6-48j6d] [756_1] [TaskManager] Launching command task: 'CallGenome+fixVcfHeader_chromId_000_chr1_0000' from sub-workflow 'CallGenome'
[2026-06-05T03:28:47.118513Z] [nf-f5039f5b152a06d09d8dcb56840491d7-493d6-48j6d] [756_1] [TaskRunner:CallGenome+fixVcfHeader_chromId_000_chr1_0000] Task initiated on local node
[2026-06-05T03:28:47.179784Z] [nf-f5039f5b152a06d09d8dcb56840491d7-493d6-48j6d] [756_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0020' launched from sub-workflow 'CallGenome'
[2026-06-05T03:28:47.179873Z] [nf-f5039f5b152a06d09d8dcb56840491d7-493d6-48j6d] [756_1] [TaskManager] Completed command task: 'CallGenome+fixVcfHeader_chromId_000_chr1_0000' launched from sub-workflow 'CallGenome'
[2026-06-05T03:28:47.180613Z] [nf-f5039f5b152a06d09d8dcb56840491d7-493d6-48j6d] [756_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0000' from sub-workflow 'CallGenome'
[2026-06-05T03:28:47.181044Z] [nf-f5039f5b152a06d09d8dcb56840491d7-493d6-48j6d] [756_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0020' from sub-workflow 'CallGenome'
[2026-06-05T03:28:47.184506Z] [nf-f5039f5b152a06d09d8dcb56840491d7-493d6-48j6d] [756_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0000] Task initiated on local node
[2026-06-05T03:28:47.185161Z] [nf-f5039f5b152a06d09d8dcb56840491d7-493d6-48j6d] [756_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0020] Task initiated on local node
[2026-06-05T03:28:47.245621Z] [nf-f5039f5b152a06d09d8dcb56840491d7-493d6-48j6d] [756_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0000' launched from sub-workflow 'CallGenome'
[2026-06-05T03:28:47.245754Z] [nf-f5039f5b152a06d09d8dcb56840491d7-493d6-48j6d] [756_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0020' launched from sub-workflow 'CallGenome'
[2026-06-05T03:28:47.277989Z] [nf-f5039f5b152a06d09d8dcb56840491d7-493d6-48j6d] [756_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0002' launched from sub-workflow 'CallGenome'
[2026-06-05T03:28:47.278921Z] [nf-f5039f5b152a06d09d8dcb56840491d7-493d6-48j6d] [756_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0002' from sub-workflow 'CallGenome'
[2026-06-05T03:28:47.282008Z] [nf-f5039f5b152a06d09d8dcb56840491d7-493d6-48j6d] [756_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0002] Task initiated on local node
[2026-06-05T03:28:47.310925Z] [nf-f5039f5b152a06d09d8dcb56840491d7-493d6-48j6d] [756_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0002' launched from sub-workflow 'CallGenome'
[2026-06-05T03:28:47.318908Z] [nf-f5039f5b152a06d09d8dcb56840491d7-493d6-48j6d] [756_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0005' launched from sub-workflow 'CallGenome'
[2026-06-05T03:28:47.319654Z] [nf-f5039f5b152a06d09d8dcb56840491d7-493d6-48j6d] [756_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0005' from sub-workflow 'CallGenome'
[2026-06-05T03:28:47.322586Z] [nf-f5039f5b152a06d09d8dcb56840491d7-493d6-48j6d] [756_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0005] Task initiated on local node
[2026-06-05T03:28:47.351842Z] [nf-f5039f5b152a06d09d8dcb56840491d7-493d6-48j6d] [756_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0005' launched from sub-workflow 'CallGenome'
[2026-06-05T03:28:47.352314Z] [nf-f5039f5b152a06d09d8dcb56840491d7-493d6-48j6d] [756_1] [TaskManager] Completed command task: 'CallGenome+completedAllGenomeSegments' launched from sub-workflow 'CallGenome'
[2026-06-05T03:28:47.352532Z] [nf-f5039f5b152a06d09d8dcb56840491d7-493d6-48j6d] [756_1] [TaskManager] Launching command task: 'CallGenome+mergeRunStats' from sub-workflow 'CallGenome'
[2026-06-05T03:28:47.352945Z] [nf-f5039f5b152a06d09d8dcb56840491d7-493d6-48j6d] [756_1] [TaskManager] Launching command task: 'CallGenome+SNV_concat_vcf' from sub-workflow 'CallGenome'
[2026-06-05T03:28:47.353511Z] [nf-f5039f5b152a06d09d8dcb56840491d7-493d6-48j6d] [756_1] [TaskManager] Launching command task: 'CallGenome+Indel_concat_vcf' from sub-workflow 'CallGenome'
[2026-06-05T03:28:47.358070Z] [nf-f5039f5b152a06d09d8dcb56840491d7-493d6-48j6d] [756_1] [TaskRunner:CallGenome+SNV_concat_vcf] Task initiated on local node
[2026-06-05T03:28:47.359835Z] [nf-f5039f5b152a06d09d8dcb56840491d7-493d6-48j6d] [756_1] [TaskRunner:CallGenome+Indel_concat_vcf] Task initiated on local node
[2026-06-05T03:28:47.361077Z] [nf-f5039f5b152a06d09d8dcb56840491d7-493d6-48j6d] [756_1] [TaskRunner:CallGenome+mergeRunStats] Task initiated on local node
[2026-06-05T03:28:47.418429Z] [nf-f5039f5b152a06d09d8dcb56840491d7-493d6-48j6d] [756_1] [TaskManager] Completed command task: 'CallGenome+SNV_concat_vcf' launched from sub-workflow 'CallGenome'
[2026-06-05T03:28:47.418523Z] [nf-f5039f5b152a06d09d8dcb56840491d7-493d6-48j6d] [756_1] [TaskManager] Completed command task: 'CallGenome+mergeRunStats' launched from sub-workflow 'CallGenome'
[2026-06-05T03:28:47.418561Z] [nf-f5039f5b152a06d09d8dcb56840491d7-493d6-48j6d] [756_1] [TaskManager] Completed command task: 'CallGenome+Indel_concat_vcf' launched from sub-workflow 'CallGenome'
[2026-06-05T03:28:47.418937Z] [nf-f5039f5b152a06d09d8dcb56840491d7-493d6-48j6d] [756_1] [TaskManager] Launching command task: 'CallGenome+Indel_index_vcf' from sub-workflow 'CallGenome'
[2026-06-05T03:28:47.419269Z] [nf-f5039f5b152a06d09d8dcb56840491d7-493d6-48j6d] [756_1] [TaskManager] Launching command task: 'CallGenome+SNV_index_vcf' from sub-workflow 'CallGenome'
[2026-06-05T03:28:47.422503Z] [nf-f5039f5b152a06d09d8dcb56840491d7-493d6-48j6d] [756_1] [TaskRunner:CallGenome+Indel_index_vcf] Task initiated on local node
[2026-06-05T03:28:47.423562Z] [nf-f5039f5b152a06d09d8dcb56840491d7-493d6-48j6d] [756_1] [TaskRunner:CallGenome+SNV_index_vcf] Task initiated on local node
[2026-06-05T03:28:47.451751Z] [nf-f5039f5b152a06d09d8dcb56840491d7-493d6-48j6d] [756_1] [TaskManager] Completed command task: 'CallGenome+Indel_index_vcf' launched from sub-workflow 'CallGenome'
[2026-06-05T03:28:47.452101Z] [nf-f5039f5b152a06d09d8dcb56840491d7-493d6-48j6d] [756_1] [TaskManager] Completed command task: 'CallGenome+SNV_index_vcf' launched from sub-workflow 'CallGenome'
[2026-06-05T03:28:47.452370Z] [nf-f5039f5b152a06d09d8dcb56840491d7-493d6-48j6d] [756_1] [TaskManager] Launching command task: 'CallGenome+removeTmpDir' from sub-workflow 'CallGenome'
[2026-06-05T03:28:47.455184Z] [nf-f5039f5b152a06d09d8dcb56840491d7-493d6-48j6d] [756_1] [TaskRunner:CallGenome+removeTmpDir] Task initiated on local node
[2026-06-05T03:28:47.484245Z] [nf-f5039f5b152a06d09d8dcb56840491d7-493d6-48j6d] [756_1] [TaskManager] Completed command task: 'CallGenome+removeTmpDir' launched from sub-workflow 'CallGenome'
[2026-06-05T03:28:49.351246Z] [nf-f5039f5b152a06d09d8dcb56840491d7-493d6-48j6d] [756_1] [TaskManager] Completed sub-workflow task: 'CallGenome' launched from master workflow
[2026-06-05T03:28:57.602424Z] [nf-f5039f5b152a06d09d8dcb56840491d7-493d6-48j6d] [756_1] [WorkflowRunner] Strelka somatic workflow successfully completed.
[2026-06-05T03:28:57.602424Z] [nf-f5039f5b152a06d09d8dcb56840491d7-493d6-48j6d] [756_1] [WorkflowRunner] 
[2026-06-05T03:28:57.602424Z] [nf-f5039f5b152a06d09d8dcb56840491d7-493d6-48j6d] [756_1] [WorkflowRunner] 	workflow version: 2.9.10
[2026-06-05T03:28:57.602485Z] [nf-f5039f5b152a06d09d8dcb56840491d7-493d6-48j6d] [756_1] [WorkflowRunner] 
[2026-06-05T03:28:57.602494Z] [nf-f5039f5b152a06d09d8dcb56840491d7-493d6-48j6d] [756_1] [WorkflowRunner] Workflow successfully completed all tasks
[2026-06-05T03:28:57.602502Z] [nf-f5039f5b152a06d09d8dcb56840491d7-493d6-48j6d] [756_1] [WorkflowRunner] Elapsed time for full workflow: 18 sec