Downloading: s3://natera-platform-sandbox/pipeline-resources/ngi-igenomes/igenomes/Homo_sapiens/GATK/GRCh38/Sequence/WholeGenomeFasta/Homo_sapiens_assembly38.fasta
  Downloading: s3://natera-platform-sandbox/pipeline-resources/AIH/dna_daq/stored-normals/reference-NA12878-downsampled-500k.bam
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/8b/abd7c9edb556e6a870990f4261b9a6/.command.sh
  Downloading: s3://natera-platform-sandbox/pipeline-resources/ngi-igenomes/igenomes/Homo_sapiens/GATK/GRCh38/Annotation/intervals/altera_padded_intervals/scatter/chr12_102480219-102480663.bed.gz
  Downloading: s3://natera-platform-sandbox/pipeline-resources/ngi-igenomes/igenomes/Homo_sapiens/GATK/GRCh38/Sequence/WholeGenomeFasta/Homo_sapiens_assembly38.fasta.fai
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/d1/b4859e2819e5c08f9ce4cd4fa95b10/HCC1395_BL.recalibrated.bam
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/d1/b4859e2819e5c08f9ce4cd4fa95b10/HCC1395_BL.recalibrated.bam.bai
  Downloading: s3://natera-platform-sandbox/pipeline-resources/AIH/dna_daq/stored-normals/reference-NA12878-downsampled-500k.bam.bai
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/8b/abd7c9edb556e6a870990f4261b9a6/.command.run
  Downloading: s3://natera-platform-sandbox/pipeline-resources/ngi-igenomes/igenomes/Homo_sapiens/GATK/GRCh38/Annotation/intervals/altera_padded_intervals/scatter/chr12_102480219-102480663.bed.gz.tbi
==> STAGING COMPLETE (10 inputs)


Successfully created workflow run script.
To execute the workflow, run the following script and set appropriate options:

/var/tmp/strelka/runWorkflow.py
[2026-06-05T03:28:55.214969Z] [nf-8babd7c9edb556e6a870990f4261b9a6-47995-twghb] [614_1] [WorkflowRunner] Initiating pyFlow run
[2026-06-05T03:28:55.216056Z] [nf-8babd7c9edb556e6a870990f4261b9a6-47995-twghb] [614_1] [WorkflowRunner] pyFlowClientWorkflowClass: StrelkaSomaticWorkflow
[2026-06-05T03:28:55.216101Z] [nf-8babd7c9edb556e6a870990f4261b9a6-47995-twghb] [614_1] [WorkflowRunner] pyFlowVersion: 1.1.20
[2026-06-05T03:28:55.216107Z] [nf-8babd7c9edb556e6a870990f4261b9a6-47995-twghb] [614_1] [WorkflowRunner] pythonVersion: 2.7.15.final.0
[2026-06-05T03:28:55.216115Z] [nf-8babd7c9edb556e6a870990f4261b9a6-47995-twghb] [614_1] [WorkflowRunner] WorkingDir: '/tmp/nxf.XXXXULB26P'
[2026-06-05T03:28:55.216120Z] [nf-8babd7c9edb556e6a870990f4261b9a6-47995-twghb] [614_1] [WorkflowRunner] ProcessCmdLine: '/var/tmp/strelka/runWorkflow.py -m local -j 8'
[2026-06-05T03:28:55.216127Z] [nf-8babd7c9edb556e6a870990f4261b9a6-47995-twghb] [614_1] [WorkflowRunner] [RunParameters] mode: local
[2026-06-05T03:28:55.216132Z] [nf-8babd7c9edb556e6a870990f4261b9a6-47995-twghb] [614_1] [WorkflowRunner] [RunParameters] nCores: 8
[2026-06-05T03:28:55.216136Z] [nf-8babd7c9edb556e6a870990f4261b9a6-47995-twghb] [614_1] [WorkflowRunner] [RunParameters] memMb: 3047507
[2026-06-05T03:28:55.216141Z] [nf-8babd7c9edb556e6a870990f4261b9a6-47995-twghb] [614_1] [WorkflowRunner] [RunParameters] dataDir: /var/tmp/strelka/workspace/pyflow.data
[2026-06-05T03:28:55.216145Z] [nf-8babd7c9edb556e6a870990f4261b9a6-47995-twghb] [614_1] [WorkflowRunner] [RunParameters] isDryRun: False
[2026-06-05T03:28:55.216149Z] [nf-8babd7c9edb556e6a870990f4261b9a6-47995-twghb] [614_1] [WorkflowRunner] [RunParameters] isContinue: False
[2026-06-05T03:28:55.216153Z] [nf-8babd7c9edb556e6a870990f4261b9a6-47995-twghb] [614_1] [WorkflowRunner] [RunParameters] isForceContinue: True
[2026-06-05T03:28:55.216157Z] [nf-8babd7c9edb556e6a870990f4261b9a6-47995-twghb] [614_1] [WorkflowRunner] [RunParameters] mailTo: ''
[2026-06-05T03:28:55.217031Z] [nf-8babd7c9edb556e6a870990f4261b9a6-47995-twghb] [614_1] [TaskRunner:masterWorkflow] Starting task specification for master workflow
[2026-06-05T03:28:55.217235Z] [nf-8babd7c9edb556e6a870990f4261b9a6-47995-twghb] [614_1] [StrelkaSomaticWorkflow] Initiating Strelka somatic workflow version: 2.9.10
[2026-06-05T03:28:55.223466Z] [nf-8babd7c9edb556e6a870990f4261b9a6-47995-twghb] [614_1] [WorkflowRunner] Adding sub-workflow task 'CallGenome' to master workflow
[2026-06-05T03:28:55.224416Z] [nf-8babd7c9edb556e6a870990f4261b9a6-47995-twghb] [614_1] [TaskManager] Launching sub-workflow task: 'CallGenome' from master workflow
[2026-06-05T03:28:55.224769Z] [nf-8babd7c9edb556e6a870990f4261b9a6-47995-twghb] [614_1] [TaskRunner:masterWorkflow] Finished task specification for master workflow
[2026-06-05T03:28:55.224966Z] [nf-8babd7c9edb556e6a870990f4261b9a6-47995-twghb] [614_1] [TaskRunner:CallGenome] Starting task specification for sub-workflow
[2026-06-05T03:28:55.225159Z] [nf-8babd7c9edb556e6a870990f4261b9a6-47995-twghb] [614_1] [WorkflowRunner] Adding command task 'CallGenome+makeTmpDir' to sub-workflow 'CallGenome'
[2026-06-05T03:28:55.225884Z] [nf-8babd7c9edb556e6a870990f4261b9a6-47995-twghb] [614_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_011_chr12_0000' to sub-workflow 'CallGenome'
[2026-06-05T03:28:55.225975Z] [nf-8babd7c9edb556e6a870990f4261b9a6-47995-twghb] [614_1] [WorkflowRunner] Adding command task 'CallGenome+fixVcfHeader_chromId_011_chr12_0000' to sub-workflow 'CallGenome'
[2026-06-05T03:28:55.226047Z] [nf-8babd7c9edb556e6a870990f4261b9a6-47995-twghb] [614_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_011_chr12_0000' to sub-workflow 'CallGenome'
[2026-06-05T03:28:55.226163Z] [nf-8babd7c9edb556e6a870990f4261b9a6-47995-twghb] [614_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_011_chr12_0001' to sub-workflow 'CallGenome'
[2026-06-05T03:28:55.226231Z] [nf-8babd7c9edb556e6a870990f4261b9a6-47995-twghb] [614_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_011_chr12_0001' to sub-workflow 'CallGenome'
[2026-06-05T03:28:55.226575Z] [nf-8babd7c9edb556e6a870990f4261b9a6-47995-twghb] [614_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_011_chr12_0002' to sub-workflow 'CallGenome'
[2026-06-05T03:28:55.227007Z] [nf-8babd7c9edb556e6a870990f4261b9a6-47995-twghb] [614_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_011_chr12_0002' to sub-workflow 'CallGenome'
[2026-06-05T03:28:55.227153Z] [nf-8babd7c9edb556e6a870990f4261b9a6-47995-twghb] [614_1] [TaskManager] Launching command task: 'CallGenome+makeTmpDir' from sub-workflow 'CallGenome'
[2026-06-05T03:28:55.227790Z] [nf-8babd7c9edb556e6a870990f4261b9a6-47995-twghb] [614_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_011_chr12_0003' to sub-workflow 'CallGenome'
[2026-06-05T03:28:55.228502Z] [nf-8babd7c9edb556e6a870990f4261b9a6-47995-twghb] [614_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_011_chr12_0003' to sub-workflow 'CallGenome'
[2026-06-05T03:28:55.230640Z] [nf-8babd7c9edb556e6a870990f4261b9a6-47995-twghb] [614_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_011_chr12_0004' to sub-workflow 'CallGenome'
[2026-06-05T03:28:55.230847Z] [nf-8babd7c9edb556e6a870990f4261b9a6-47995-twghb] [614_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_011_chr12_0004' to sub-workflow 'CallGenome'
[2026-06-05T03:28:55.231073Z] [nf-8babd7c9edb556e6a870990f4261b9a6-47995-twghb] [614_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_011_chr12_0005' to sub-workflow 'CallGenome'
[2026-06-05T03:28:55.231560Z] [nf-8babd7c9edb556e6a870990f4261b9a6-47995-twghb] [614_1] [TaskRunner:CallGenome+makeTmpDir] Task initiated on local node
[2026-06-05T03:28:55.231953Z] [nf-8babd7c9edb556e6a870990f4261b9a6-47995-twghb] [614_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_011_chr12_0005' to sub-workflow 'CallGenome'
[2026-06-05T03:28:55.232310Z] [nf-8babd7c9edb556e6a870990f4261b9a6-47995-twghb] [614_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_011_chr12_0006' to sub-workflow 'CallGenome'
[2026-06-05T03:28:55.232385Z] [nf-8babd7c9edb556e6a870990f4261b9a6-47995-twghb] [614_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_011_chr12_0006' to sub-workflow 'CallGenome'
[2026-06-05T03:28:55.232504Z] [nf-8babd7c9edb556e6a870990f4261b9a6-47995-twghb] [614_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_011_chr12_0007' to sub-workflow 'CallGenome'
[2026-06-05T03:28:55.232573Z] [nf-8babd7c9edb556e6a870990f4261b9a6-47995-twghb] [614_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_011_chr12_0007' to sub-workflow 'CallGenome'
[2026-06-05T03:28:55.232779Z] [nf-8babd7c9edb556e6a870990f4261b9a6-47995-twghb] [614_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_011_chr12_0008' to sub-workflow 'CallGenome'
[2026-06-05T03:28:55.232854Z] [nf-8babd7c9edb556e6a870990f4261b9a6-47995-twghb] [614_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_011_chr12_0008' to sub-workflow 'CallGenome'
[2026-06-05T03:28:55.233060Z] [nf-8babd7c9edb556e6a870990f4261b9a6-47995-twghb] [614_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_011_chr12_0009' to sub-workflow 'CallGenome'
[2026-06-05T03:28:55.233142Z] [nf-8babd7c9edb556e6a870990f4261b9a6-47995-twghb] [614_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_011_chr12_0009' to sub-workflow 'CallGenome'
[2026-06-05T03:28:55.233263Z] [nf-8babd7c9edb556e6a870990f4261b9a6-47995-twghb] [614_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_011_chr12_0010' to sub-workflow 'CallGenome'
[2026-06-05T03:28:55.233497Z] [nf-8babd7c9edb556e6a870990f4261b9a6-47995-twghb] [614_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_011_chr12_0010' to sub-workflow 'CallGenome'
[2026-06-05T03:28:55.233931Z] [nf-8babd7c9edb556e6a870990f4261b9a6-47995-twghb] [614_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_011_chr12_0011' to sub-workflow 'CallGenome'
[2026-06-05T03:28:55.234000Z] [nf-8babd7c9edb556e6a870990f4261b9a6-47995-twghb] [614_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_011_chr12_0011' to sub-workflow 'CallGenome'
[2026-06-05T03:28:55.234113Z] [nf-8babd7c9edb556e6a870990f4261b9a6-47995-twghb] [614_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_012_chr13_0000' to sub-workflow 'CallGenome'
[2026-06-05T03:28:55.234180Z] [nf-8babd7c9edb556e6a870990f4261b9a6-47995-twghb] [614_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_012_chr13_0000' to sub-workflow 'CallGenome'
[2026-06-05T03:28:55.234289Z] [nf-8babd7c9edb556e6a870990f4261b9a6-47995-twghb] [614_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_012_chr13_0001' to sub-workflow 'CallGenome'
[2026-06-05T03:28:55.234461Z] [nf-8babd7c9edb556e6a870990f4261b9a6-47995-twghb] [614_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_012_chr13_0001' to sub-workflow 'CallGenome'
[2026-06-05T03:28:55.234599Z] [nf-8babd7c9edb556e6a870990f4261b9a6-47995-twghb] [614_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_012_chr13_0002' to sub-workflow 'CallGenome'
[2026-06-05T03:28:55.234667Z] [nf-8babd7c9edb556e6a870990f4261b9a6-47995-twghb] [614_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_012_chr13_0002' to sub-workflow 'CallGenome'
[2026-06-05T03:28:55.234780Z] [nf-8babd7c9edb556e6a870990f4261b9a6-47995-twghb] [614_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_012_chr13_0003' to sub-workflow 'CallGenome'
[2026-06-05T03:28:55.234849Z] [nf-8babd7c9edb556e6a870990f4261b9a6-47995-twghb] [614_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_012_chr13_0003' to sub-workflow 'CallGenome'
[2026-06-05T03:28:55.235213Z] [nf-8babd7c9edb556e6a870990f4261b9a6-47995-twghb] [614_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_012_chr13_0004' to sub-workflow 'CallGenome'
[2026-06-05T03:28:55.235539Z] [nf-8babd7c9edb556e6a870990f4261b9a6-47995-twghb] [614_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_012_chr13_0004' to sub-workflow 'CallGenome'
[2026-06-05T03:28:55.235661Z] [nf-8babd7c9edb556e6a870990f4261b9a6-47995-twghb] [614_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_012_chr13_0005' to sub-workflow 'CallGenome'
[2026-06-05T03:28:55.235732Z] [nf-8babd7c9edb556e6a870990f4261b9a6-47995-twghb] [614_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_012_chr13_0005' to sub-workflow 'CallGenome'
[2026-06-05T03:28:55.235847Z] [nf-8babd7c9edb556e6a870990f4261b9a6-47995-twghb] [614_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_012_chr13_0006' to sub-workflow 'CallGenome'
[2026-06-05T03:28:55.235910Z] [nf-8babd7c9edb556e6a870990f4261b9a6-47995-twghb] [614_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_012_chr13_0006' to sub-workflow 'CallGenome'
[2026-06-05T03:28:55.236026Z] [nf-8babd7c9edb556e6a870990f4261b9a6-47995-twghb] [614_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_012_chr13_0007' to sub-workflow 'CallGenome'
[2026-06-05T03:28:55.236093Z] [nf-8babd7c9edb556e6a870990f4261b9a6-47995-twghb] [614_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_012_chr13_0007' to sub-workflow 'CallGenome'
[2026-06-05T03:28:55.236205Z] [nf-8babd7c9edb556e6a870990f4261b9a6-47995-twghb] [614_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_012_chr13_0008' to sub-workflow 'CallGenome'
[2026-06-05T03:28:55.236270Z] [nf-8babd7c9edb556e6a870990f4261b9a6-47995-twghb] [614_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_012_chr13_0008' to sub-workflow 'CallGenome'
[2026-06-05T03:28:55.236391Z] [nf-8babd7c9edb556e6a870990f4261b9a6-47995-twghb] [614_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_012_chr13_0009' to sub-workflow 'CallGenome'
[2026-06-05T03:28:55.236457Z] [nf-8babd7c9edb556e6a870990f4261b9a6-47995-twghb] [614_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_012_chr13_0009' to sub-workflow 'CallGenome'
[2026-06-05T03:28:55.236805Z] [nf-8babd7c9edb556e6a870990f4261b9a6-47995-twghb] [614_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_013_chr14_0000' to sub-workflow 'CallGenome'
[2026-06-05T03:28:55.238517Z] [nf-8babd7c9edb556e6a870990f4261b9a6-47995-twghb] [614_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_013_chr14_0000' to sub-workflow 'CallGenome'
[2026-06-05T03:28:55.239309Z] [nf-8babd7c9edb556e6a870990f4261b9a6-47995-twghb] [614_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_013_chr14_0001' to sub-workflow 'CallGenome'
[2026-06-05T03:28:55.239437Z] [nf-8babd7c9edb556e6a870990f4261b9a6-47995-twghb] [614_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_013_chr14_0001' to sub-workflow 'CallGenome'
[2026-06-05T03:28:55.239570Z] [nf-8babd7c9edb556e6a870990f4261b9a6-47995-twghb] [614_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_013_chr14_0002' to sub-workflow 'CallGenome'
[2026-06-05T03:28:55.239639Z] [nf-8babd7c9edb556e6a870990f4261b9a6-47995-twghb] [614_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_013_chr14_0002' to sub-workflow 'CallGenome'
[2026-06-05T03:28:55.239761Z] [nf-8babd7c9edb556e6a870990f4261b9a6-47995-twghb] [614_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_013_chr14_0003' to sub-workflow 'CallGenome'
[2026-06-05T03:28:55.239830Z] [nf-8babd7c9edb556e6a870990f4261b9a6-47995-twghb] [614_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_013_chr14_0003' to sub-workflow 'CallGenome'
[2026-06-05T03:28:55.240307Z] [nf-8babd7c9edb556e6a870990f4261b9a6-47995-twghb] [614_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_013_chr14_0004' to sub-workflow 'CallGenome'
[2026-06-05T03:28:55.240808Z] [nf-8babd7c9edb556e6a870990f4261b9a6-47995-twghb] [614_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_013_chr14_0004' to sub-workflow 'CallGenome'
[2026-06-05T03:28:55.240928Z] [nf-8babd7c9edb556e6a870990f4261b9a6-47995-twghb] [614_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_013_chr14_0005' to sub-workflow 'CallGenome'
[2026-06-05T03:28:55.240997Z] [nf-8babd7c9edb556e6a870990f4261b9a6-47995-twghb] [614_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_013_chr14_0005' to sub-workflow 'CallGenome'
[2026-06-05T03:28:55.241112Z] [nf-8babd7c9edb556e6a870990f4261b9a6-47995-twghb] [614_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_013_chr14_0006' to sub-workflow 'CallGenome'
[2026-06-05T03:28:55.241173Z] [nf-8babd7c9edb556e6a870990f4261b9a6-47995-twghb] [614_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_013_chr14_0006' to sub-workflow 'CallGenome'
[2026-06-05T03:28:55.241289Z] [nf-8babd7c9edb556e6a870990f4261b9a6-47995-twghb] [614_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_013_chr14_0007' to sub-workflow 'CallGenome'
[2026-06-05T03:28:55.241352Z] [nf-8babd7c9edb556e6a870990f4261b9a6-47995-twghb] [614_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_013_chr14_0007' to sub-workflow 'CallGenome'
[2026-06-05T03:28:55.241480Z] [nf-8babd7c9edb556e6a870990f4261b9a6-47995-twghb] [614_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_013_chr14_0008' to sub-workflow 'CallGenome'
[2026-06-05T03:28:55.241553Z] [nf-8babd7c9edb556e6a870990f4261b9a6-47995-twghb] [614_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_013_chr14_0008' to sub-workflow 'CallGenome'
[2026-06-05T03:28:55.241662Z] [nf-8babd7c9edb556e6a870990f4261b9a6-47995-twghb] [614_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_014_chr15_0000' to sub-workflow 'CallGenome'
[2026-06-05T03:28:55.241723Z] [nf-8babd7c9edb556e6a870990f4261b9a6-47995-twghb] [614_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_014_chr15_0000' to sub-workflow 'CallGenome'
[2026-06-05T03:28:55.241874Z] [nf-8babd7c9edb556e6a870990f4261b9a6-47995-twghb] [614_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_014_chr15_0001' to sub-workflow 'CallGenome'
[2026-06-05T03:28:55.242181Z] [nf-8babd7c9edb556e6a870990f4261b9a6-47995-twghb] [614_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_014_chr15_0001' to sub-workflow 'CallGenome'
[2026-06-05T03:28:55.242779Z] [nf-8babd7c9edb556e6a870990f4261b9a6-47995-twghb] [614_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_014_chr15_0002' to sub-workflow 'CallGenome'
[2026-06-05T03:28:55.242850Z] [nf-8babd7c9edb556e6a870990f4261b9a6-47995-twghb] [614_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_014_chr15_0002' to sub-workflow 'CallGenome'
[2026-06-05T03:28:55.242962Z] [nf-8babd7c9edb556e6a870990f4261b9a6-47995-twghb] [614_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_014_chr15_0003' to sub-workflow 'CallGenome'
[2026-06-05T03:28:55.243031Z] [nf-8babd7c9edb556e6a870990f4261b9a6-47995-twghb] [614_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_014_chr15_0003' to sub-workflow 'CallGenome'
[2026-06-05T03:28:55.244593Z] [nf-8babd7c9edb556e6a870990f4261b9a6-47995-twghb] [614_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_014_chr15_0004' to sub-workflow 'CallGenome'
[2026-06-05T03:28:55.245309Z] [nf-8babd7c9edb556e6a870990f4261b9a6-47995-twghb] [614_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_014_chr15_0004' to sub-workflow 'CallGenome'
[2026-06-05T03:28:55.245445Z] [nf-8babd7c9edb556e6a870990f4261b9a6-47995-twghb] [614_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_014_chr15_0005' to sub-workflow 'CallGenome'
[2026-06-05T03:28:55.245520Z] [nf-8babd7c9edb556e6a870990f4261b9a6-47995-twghb] [614_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_014_chr15_0005' to sub-workflow 'CallGenome'
[2026-06-05T03:28:55.245637Z] [nf-8babd7c9edb556e6a870990f4261b9a6-47995-twghb] [614_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_014_chr15_0006' to sub-workflow 'CallGenome'
[2026-06-05T03:28:55.245708Z] [nf-8babd7c9edb556e6a870990f4261b9a6-47995-twghb] [614_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_014_chr15_0006' to sub-workflow 'CallGenome'
[2026-06-05T03:28:55.245825Z] [nf-8babd7c9edb556e6a870990f4261b9a6-47995-twghb] [614_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_014_chr15_0007' to sub-workflow 'CallGenome'
[2026-06-05T03:28:55.245888Z] [nf-8babd7c9edb556e6a870990f4261b9a6-47995-twghb] [614_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_014_chr15_0007' to sub-workflow 'CallGenome'
[2026-06-05T03:28:55.246007Z] [nf-8babd7c9edb556e6a870990f4261b9a6-47995-twghb] [614_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_014_chr15_0008' to sub-workflow 'CallGenome'
[2026-06-05T03:28:55.246071Z] [nf-8babd7c9edb556e6a870990f4261b9a6-47995-twghb] [614_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_014_chr15_0008' to sub-workflow 'CallGenome'
[2026-06-05T03:28:55.246183Z] [nf-8babd7c9edb556e6a870990f4261b9a6-47995-twghb] [614_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_015_chr16_0000' to sub-workflow 'CallGenome'
[2026-06-05T03:28:55.246253Z] [nf-8babd7c9edb556e6a870990f4261b9a6-47995-twghb] [614_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_015_chr16_0000' to sub-workflow 'CallGenome'
[2026-06-05T03:28:55.246598Z] [nf-8babd7c9edb556e6a870990f4261b9a6-47995-twghb] [614_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_015_chr16_0001' to sub-workflow 'CallGenome'
[2026-06-05T03:28:55.247371Z] [nf-8babd7c9edb556e6a870990f4261b9a6-47995-twghb] [614_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_015_chr16_0001' to sub-workflow 'CallGenome'
[2026-06-05T03:28:55.247486Z] [nf-8babd7c9edb556e6a870990f4261b9a6-47995-twghb] [614_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_015_chr16_0002' to sub-workflow 'CallGenome'
[2026-06-05T03:28:55.247551Z] [nf-8babd7c9edb556e6a870990f4261b9a6-47995-twghb] [614_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_015_chr16_0002' to sub-workflow 'CallGenome'
[2026-06-05T03:28:55.247664Z] [nf-8babd7c9edb556e6a870990f4261b9a6-47995-twghb] [614_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_015_chr16_0003' to sub-workflow 'CallGenome'
[2026-06-05T03:28:55.247735Z] [nf-8babd7c9edb556e6a870990f4261b9a6-47995-twghb] [614_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_015_chr16_0003' to sub-workflow 'CallGenome'
[2026-06-05T03:28:55.247845Z] [nf-8babd7c9edb556e6a870990f4261b9a6-47995-twghb] [614_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_015_chr16_0004' to sub-workflow 'CallGenome'
[2026-06-05T03:28:55.247909Z] [nf-8babd7c9edb556e6a870990f4261b9a6-47995-twghb] [614_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_015_chr16_0004' to sub-workflow 'CallGenome'
[2026-06-05T03:28:55.248020Z] [nf-8babd7c9edb556e6a870990f4261b9a6-47995-twghb] [614_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_015_chr16_0005' to sub-workflow 'CallGenome'
[2026-06-05T03:28:55.248084Z] [nf-8babd7c9edb556e6a870990f4261b9a6-47995-twghb] [614_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_015_chr16_0005' to sub-workflow 'CallGenome'
[2026-06-05T03:28:55.248195Z] [nf-8babd7c9edb556e6a870990f4261b9a6-47995-twghb] [614_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_015_chr16_0006' to sub-workflow 'CallGenome'
[2026-06-05T03:28:55.248257Z] [nf-8babd7c9edb556e6a870990f4261b9a6-47995-twghb] [614_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_015_chr16_0006' to sub-workflow 'CallGenome'
[2026-06-05T03:28:55.262705Z] [nf-8babd7c9edb556e6a870990f4261b9a6-47995-twghb] [614_1] [TaskManager] Completed command task: 'CallGenome+makeTmpDir' launched from sub-workflow 'CallGenome'
[2026-06-05T03:28:55.266658Z] [nf-8babd7c9edb556e6a870990f4261b9a6-47995-twghb] [614_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_015_chr16_0007' to sub-workflow 'CallGenome'
[2026-06-05T03:28:55.267762Z] [nf-8babd7c9edb556e6a870990f4261b9a6-47995-twghb] [614_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_015_chr16_0007' to sub-workflow 'CallGenome'
[2026-06-05T03:28:55.268075Z] [nf-8babd7c9edb556e6a870990f4261b9a6-47995-twghb] [614_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0004' from sub-workflow 'CallGenome'
[2026-06-05T03:28:55.268207Z] [nf-8babd7c9edb556e6a870990f4261b9a6-47995-twghb] [614_1] [WorkflowRunner] Adding command task 'CallGenome+completedAllGenomeSegments' to sub-workflow 'CallGenome'
[2026-06-05T03:28:55.268495Z] [nf-8babd7c9edb556e6a870990f4261b9a6-47995-twghb] [614_1] [WorkflowRunner] Adding command task 'CallGenome+SNV_concat_vcf' to sub-workflow 'CallGenome'
[2026-06-05T03:28:55.268849Z] [nf-8babd7c9edb556e6a870990f4261b9a6-47995-twghb] [614_1] [WorkflowRunner] Adding command task 'CallGenome+SNV_index_vcf' to sub-workflow 'CallGenome'
[2026-06-05T03:28:55.269150Z] [nf-8babd7c9edb556e6a870990f4261b9a6-47995-twghb] [614_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_013_chr14_0002' from sub-workflow 'CallGenome'
[2026-06-05T03:28:55.269626Z] [nf-8babd7c9edb556e6a870990f4261b9a6-47995-twghb] [614_1] [WorkflowRunner] Adding command task 'CallGenome+Indel_concat_vcf' to sub-workflow 'CallGenome'
[2026-06-05T03:28:55.269919Z] [nf-8babd7c9edb556e6a870990f4261b9a6-47995-twghb] [614_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_014_chr15_0006' from sub-workflow 'CallGenome'
[2026-06-05T03:28:55.270690Z] [nf-8babd7c9edb556e6a870990f4261b9a6-47995-twghb] [614_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_012_chr13_0007' from sub-workflow 'CallGenome'
[2026-06-05T03:28:55.271156Z] [nf-8babd7c9edb556e6a870990f4261b9a6-47995-twghb] [614_1] [WorkflowRunner] Adding command task 'CallGenome+Indel_index_vcf' to sub-workflow 'CallGenome'
[2026-06-05T03:28:55.272095Z] [nf-8babd7c9edb556e6a870990f4261b9a6-47995-twghb] [614_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_013_chr14_0005' from sub-workflow 'CallGenome'
[2026-06-05T03:28:55.273857Z] [nf-8babd7c9edb556e6a870990f4261b9a6-47995-twghb] [614_1] [WorkflowRunner] Adding command task 'CallGenome+mergeRunStats' to sub-workflow 'CallGenome'
[2026-06-05T03:28:55.274519Z] [nf-8babd7c9edb556e6a870990f4261b9a6-47995-twghb] [614_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_014_chr15_0001' from sub-workflow 'CallGenome'
[2026-06-05T03:28:55.276830Z] [nf-8babd7c9edb556e6a870990f4261b9a6-47995-twghb] [614_1] [WorkflowRunner] Adding command task 'CallGenome+removeTmpDir' to sub-workflow 'CallGenome'
[2026-06-05T03:28:55.278142Z] [nf-8babd7c9edb556e6a870990f4261b9a6-47995-twghb] [614_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_011_chr12_0004] Task initiated on local node
[2026-06-05T03:28:55.278710Z] [nf-8babd7c9edb556e6a870990f4261b9a6-47995-twghb] [614_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_014_chr15_0008' from sub-workflow 'CallGenome'
[2026-06-05T03:28:55.279127Z] [nf-8babd7c9edb556e6a870990f4261b9a6-47995-twghb] [614_1] [TaskRunner:CallGenome] Finished task specification for sub-workflow
[2026-06-05T03:28:55.279845Z] [nf-8babd7c9edb556e6a870990f4261b9a6-47995-twghb] [614_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_014_chr15_0005' from sub-workflow 'CallGenome'
[2026-06-05T03:28:55.285858Z] [nf-8babd7c9edb556e6a870990f4261b9a6-47995-twghb] [614_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_014_chr15_0006] Task initiated on local node
[2026-06-05T03:28:55.286701Z] [nf-8babd7c9edb556e6a870990f4261b9a6-47995-twghb] [614_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_013_chr14_0002] Task initiated on local node
[2026-06-05T03:28:55.293975Z] [nf-8babd7c9edb556e6a870990f4261b9a6-47995-twghb] [614_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_013_chr14_0005] Task initiated on local node
[2026-06-05T03:28:55.297457Z] [nf-8babd7c9edb556e6a870990f4261b9a6-47995-twghb] [614_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_014_chr15_0001] Task initiated on local node
[2026-06-05T03:28:55.301937Z] [nf-8babd7c9edb556e6a870990f4261b9a6-47995-twghb] [614_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_014_chr15_0008] Task initiated on local node
[2026-06-05T03:28:55.303762Z] [nf-8babd7c9edb556e6a870990f4261b9a6-47995-twghb] [614_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_014_chr15_0005] Task initiated on local node
[2026-06-05T03:28:55.368180Z] [nf-8babd7c9edb556e6a870990f4261b9a6-47995-twghb] [614_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0004' launched from sub-workflow 'CallGenome'
[2026-06-05T03:28:55.369256Z] [nf-8babd7c9edb556e6a870990f4261b9a6-47995-twghb] [614_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_015_chr16_0007' from sub-workflow 'CallGenome'
[2026-06-05T03:28:55.373961Z] [nf-8babd7c9edb556e6a870990f4261b9a6-47995-twghb] [614_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_015_chr16_0007] Task initiated on local node
[2026-06-05T03:28:55.484620Z] [nf-8babd7c9edb556e6a870990f4261b9a6-47995-twghb] [614_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_015_chr16_0007' launched from sub-workflow 'CallGenome'
[2026-06-05T03:28:55.485756Z] [nf-8babd7c9edb556e6a870990f4261b9a6-47995-twghb] [614_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_012_chr13_0002' from sub-workflow 'CallGenome'
[2026-06-05T03:28:55.489301Z] [nf-8babd7c9edb556e6a870990f4261b9a6-47995-twghb] [614_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_012_chr13_0002] Task initiated on local node
[2026-06-05T03:28:55.600571Z] [nf-8babd7c9edb556e6a870990f4261b9a6-47995-twghb] [614_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_014_chr15_0001' launched from sub-workflow 'CallGenome'
[2026-06-05T03:28:55.601711Z] [nf-8babd7c9edb556e6a870990f4261b9a6-47995-twghb] [614_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_014_chr15_0003' from sub-workflow 'CallGenome'
[2026-06-05T03:28:55.605540Z] [nf-8babd7c9edb556e6a870990f4261b9a6-47995-twghb] [614_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_014_chr15_0003] Task initiated on local node
[2026-06-05T03:28:56.670316Z] [nf-8babd7c9edb556e6a870990f4261b9a6-47995-twghb] [614_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_013_chr14_0002' launched from sub-workflow 'CallGenome'
[2026-06-05T03:28:56.671360Z] [nf-8babd7c9edb556e6a870990f4261b9a6-47995-twghb] [614_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_015_chr16_0004' from sub-workflow 'CallGenome'
[2026-06-05T03:28:56.674732Z] [nf-8babd7c9edb556e6a870990f4261b9a6-47995-twghb] [614_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_015_chr16_0004] Task initiated on local node
[2026-06-05T03:28:56.736127Z] [nf-8babd7c9edb556e6a870990f4261b9a6-47995-twghb] [614_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_014_chr15_0008' launched from sub-workflow 'CallGenome'
[2026-06-05T03:28:56.736230Z] [nf-8babd7c9edb556e6a870990f4261b9a6-47995-twghb] [614_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_015_chr16_0004' launched from sub-workflow 'CallGenome'
[2026-06-05T03:28:56.737253Z] [nf-8babd7c9edb556e6a870990f4261b9a6-47995-twghb] [614_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_015_chr16_0004' from sub-workflow 'CallGenome'
[2026-06-05T03:28:56.737616Z] [nf-8babd7c9edb556e6a870990f4261b9a6-47995-twghb] [614_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0009' from sub-workflow 'CallGenome'
[2026-06-05T03:28:56.741451Z] [nf-8babd7c9edb556e6a870990f4261b9a6-47995-twghb] [614_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_015_chr16_0004] Task initiated on local node
[2026-06-05T03:28:56.743145Z] [nf-8babd7c9edb556e6a870990f4261b9a6-47995-twghb] [614_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_011_chr12_0009] Task initiated on local node
[2026-06-05T03:28:56.802582Z] [nf-8babd7c9edb556e6a870990f4261b9a6-47995-twghb] [614_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_015_chr16_0004' launched from sub-workflow 'CallGenome'
[2026-06-05T03:28:56.803749Z] [nf-8babd7c9edb556e6a870990f4261b9a6-47995-twghb] [614_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_013_chr14_0007' from sub-workflow 'CallGenome'
[2026-06-05T03:28:56.807198Z] [nf-8babd7c9edb556e6a870990f4261b9a6-47995-twghb] [614_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_013_chr14_0007] Task initiated on local node
[2026-06-05T03:28:57.520703Z] [nf-8babd7c9edb556e6a870990f4261b9a6-47995-twghb] [614_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_012_chr13_0002' launched from sub-workflow 'CallGenome'
[2026-06-05T03:28:57.521822Z] [nf-8babd7c9edb556e6a870990f4261b9a6-47995-twghb] [614_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0000' from sub-workflow 'CallGenome'
[2026-06-05T03:28:57.525436Z] [nf-8babd7c9edb556e6a870990f4261b9a6-47995-twghb] [614_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_011_chr12_0000] Task initiated on local node
[2026-06-05T03:28:57.586527Z] [nf-8babd7c9edb556e6a870990f4261b9a6-47995-twghb] [614_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0000' launched from sub-workflow 'CallGenome'
[2026-06-05T03:28:57.587588Z] [nf-8babd7c9edb556e6a870990f4261b9a6-47995-twghb] [614_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0007' from sub-workflow 'CallGenome'
[2026-06-05T03:28:57.590916Z] [nf-8babd7c9edb556e6a870990f4261b9a6-47995-twghb] [614_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_011_chr12_0007] Task initiated on local node
[2026-06-05T03:28:57.652196Z] [nf-8babd7c9edb556e6a870990f4261b9a6-47995-twghb] [614_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0007' launched from sub-workflow 'CallGenome'
[2026-06-05T03:28:57.653284Z] [nf-8babd7c9edb556e6a870990f4261b9a6-47995-twghb] [614_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_012_chr13_0005' from sub-workflow 'CallGenome'
[2026-06-05T03:28:57.656845Z] [nf-8babd7c9edb556e6a870990f4261b9a6-47995-twghb] [614_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_012_chr13_0005] Task initiated on local node
[2026-06-05T03:28:57.920735Z] [nf-8babd7c9edb556e6a870990f4261b9a6-47995-twghb] [614_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_012_chr13_0007] Task initiated on local node
[2026-06-05T03:28:57.968524Z] [nf-8babd7c9edb556e6a870990f4261b9a6-47995-twghb] [614_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_013_chr14_0005' launched from sub-workflow 'CallGenome'
[2026-06-05T03:28:57.968633Z] [nf-8babd7c9edb556e6a870990f4261b9a6-47995-twghb] [614_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_012_chr13_0007' launched from sub-workflow 'CallGenome'
[2026-06-05T03:28:57.969653Z] [nf-8babd7c9edb556e6a870990f4261b9a6-47995-twghb] [614_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_013_chr14_0005' from sub-workflow 'CallGenome'
[2026-06-05T03:28:57.970141Z] [nf-8babd7c9edb556e6a870990f4261b9a6-47995-twghb] [614_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_013_chr14_0004' from sub-workflow 'CallGenome'
[2026-06-05T03:28:57.974588Z] [nf-8babd7c9edb556e6a870990f4261b9a6-47995-twghb] [614_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_013_chr14_0005] Task initiated on local node
[2026-06-05T03:28:57.975608Z] [nf-8babd7c9edb556e6a870990f4261b9a6-47995-twghb] [614_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_013_chr14_0004] Task initiated on local node
[2026-06-05T03:28:57.979228Z] [nf-8babd7c9edb556e6a870990f4261b9a6-47995-twghb] [614_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_014_chr15_0006' launched from sub-workflow 'CallGenome'
[2026-06-05T03:28:57.980284Z] [nf-8babd7c9edb556e6a870990f4261b9a6-47995-twghb] [614_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0007' from sub-workflow 'CallGenome'
[2026-06-05T03:28:57.983565Z] [nf-8babd7c9edb556e6a870990f4261b9a6-47995-twghb] [614_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_011_chr12_0007] Task initiated on local node
[2026-06-05T03:28:58.012719Z] [nf-8babd7c9edb556e6a870990f4261b9a6-47995-twghb] [614_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_013_chr14_0005' launched from sub-workflow 'CallGenome'
[2026-06-05T03:28:58.013610Z] [nf-8babd7c9edb556e6a870990f4261b9a6-47995-twghb] [614_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_014_chr15_0006' from sub-workflow 'CallGenome'
[2026-06-05T03:28:58.017422Z] [nf-8babd7c9edb556e6a870990f4261b9a6-47995-twghb] [614_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_014_chr15_0006] Task initiated on local node
[2026-06-05T03:28:58.018012Z] [nf-8babd7c9edb556e6a870990f4261b9a6-47995-twghb] [614_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0007' launched from sub-workflow 'CallGenome'
[2026-06-05T03:28:58.018987Z] [nf-8babd7c9edb556e6a870990f4261b9a6-47995-twghb] [614_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_014_chr15_0001' from sub-workflow 'CallGenome'
[2026-06-05T03:28:58.022113Z] [nf-8babd7c9edb556e6a870990f4261b9a6-47995-twghb] [614_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_014_chr15_0001] Task initiated on local node
[2026-06-05T03:28:58.083832Z] [nf-8babd7c9edb556e6a870990f4261b9a6-47995-twghb] [614_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_014_chr15_0005' launched from sub-workflow 'CallGenome'
[2026-06-05T03:28:58.083928Z] [nf-8babd7c9edb556e6a870990f4261b9a6-47995-twghb] [614_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_014_chr15_0001' launched from sub-workflow 'CallGenome'
[2026-06-05T03:28:58.083971Z] [nf-8babd7c9edb556e6a870990f4261b9a6-47995-twghb] [614_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_014_chr15_0006' launched from sub-workflow 'CallGenome'
[2026-06-05T03:28:58.084958Z] [nf-8babd7c9edb556e6a870990f4261b9a6-47995-twghb] [614_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_013_chr14_0002' from sub-workflow 'CallGenome'
[2026-06-05T03:28:58.085307Z] [nf-8babd7c9edb556e6a870990f4261b9a6-47995-twghb] [614_1] [TaskManager] Launching command task: 'CallGenome+fixVcfHeader_chromId_011_chr12_0000' from sub-workflow 'CallGenome'
[2026-06-05T03:28:58.085753Z] [nf-8babd7c9edb556e6a870990f4261b9a6-47995-twghb] [614_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_015_chr16_0006' from sub-workflow 'CallGenome'
[2026-06-05T03:28:58.089963Z] [nf-8babd7c9edb556e6a870990f4261b9a6-47995-twghb] [614_1] [TaskRunner:CallGenome+fixVcfHeader_chromId_011_chr12_0000] Task initiated on local node
[2026-06-05T03:28:58.091709Z] [nf-8babd7c9edb556e6a870990f4261b9a6-47995-twghb] [614_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_013_chr14_0002] Task initiated on local node
[2026-06-05T03:28:58.093054Z] [nf-8babd7c9edb556e6a870990f4261b9a6-47995-twghb] [614_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_015_chr16_0006] Task initiated on local node
[2026-06-05T03:28:58.150827Z] [nf-8babd7c9edb556e6a870990f4261b9a6-47995-twghb] [614_1] [TaskManager] Completed command task: 'CallGenome+fixVcfHeader_chromId_011_chr12_0000' launched from sub-workflow 'CallGenome'
[2026-06-05T03:28:58.150933Z] [nf-8babd7c9edb556e6a870990f4261b9a6-47995-twghb] [614_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_013_chr14_0002' launched from sub-workflow 'CallGenome'
[2026-06-05T03:28:58.152286Z] [nf-8babd7c9edb556e6a870990f4261b9a6-47995-twghb] [614_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_014_chr15_0000' from sub-workflow 'CallGenome'
[2026-06-05T03:28:58.152570Z] [nf-8babd7c9edb556e6a870990f4261b9a6-47995-twghb] [614_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_014_chr15_0005' from sub-workflow 'CallGenome'
[2026-06-05T03:28:58.152885Z] [nf-8babd7c9edb556e6a870990f4261b9a6-47995-twghb] [614_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_015_chr16_0006' launched from sub-workflow 'CallGenome'
[2026-06-05T03:28:58.156126Z] [nf-8babd7c9edb556e6a870990f4261b9a6-47995-twghb] [614_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_014_chr15_0005] Task initiated on local node
[2026-06-05T03:28:58.158439Z] [nf-8babd7c9edb556e6a870990f4261b9a6-47995-twghb] [614_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_012_chr13_0009' from sub-workflow 'CallGenome'
[2026-06-05T03:28:58.159033Z] [nf-8babd7c9edb556e6a870990f4261b9a6-47995-twghb] [614_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_014_chr15_0000] Task initiated on local node
[2026-06-05T03:28:58.161738Z] [nf-8babd7c9edb556e6a870990f4261b9a6-47995-twghb] [614_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_012_chr13_0009] Task initiated on local node
[2026-06-05T03:28:58.162583Z] [nf-8babd7c9edb556e6a870990f4261b9a6-47995-twghb] [614_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_012_chr13_0005' launched from sub-workflow 'CallGenome'
[2026-06-05T03:28:58.163459Z] [nf-8babd7c9edb556e6a870990f4261b9a6-47995-twghb] [614_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_012_chr13_0005' from sub-workflow 'CallGenome'
[2026-06-05T03:28:58.166894Z] [nf-8babd7c9edb556e6a870990f4261b9a6-47995-twghb] [614_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_012_chr13_0005] Task initiated on local node
[2026-06-05T03:28:58.227709Z] [nf-8babd7c9edb556e6a870990f4261b9a6-47995-twghb] [614_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_014_chr15_0005' launched from sub-workflow 'CallGenome'
[2026-06-05T03:28:58.227818Z] [nf-8babd7c9edb556e6a870990f4261b9a6-47995-twghb] [614_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_014_chr15_0000' launched from sub-workflow 'CallGenome'
[2026-06-05T03:28:58.227850Z] [nf-8babd7c9edb556e6a870990f4261b9a6-47995-twghb] [614_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_012_chr13_0005' launched from sub-workflow 'CallGenome'
[2026-06-05T03:28:58.228773Z] [nf-8babd7c9edb556e6a870990f4261b9a6-47995-twghb] [614_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0011' from sub-workflow 'CallGenome'
[2026-06-05T03:28:58.229160Z] [nf-8babd7c9edb556e6a870990f4261b9a6-47995-twghb] [614_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0000' from sub-workflow 'CallGenome'
[2026-06-05T03:28:58.229667Z] [nf-8babd7c9edb556e6a870990f4261b9a6-47995-twghb] [614_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0006' from sub-workflow 'CallGenome'
[2026-06-05T03:28:58.233704Z] [nf-8babd7c9edb556e6a870990f4261b9a6-47995-twghb] [614_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_011_chr12_0000] Task initiated on local node
[2026-06-05T03:28:58.236324Z] [nf-8babd7c9edb556e6a870990f4261b9a6-47995-twghb] [614_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_011_chr12_0011] Task initiated on local node
[2026-06-05T03:28:58.237365Z] [nf-8babd7c9edb556e6a870990f4261b9a6-47995-twghb] [614_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_011_chr12_0006] Task initiated on local node
[2026-06-05T03:28:58.296526Z] [nf-8babd7c9edb556e6a870990f4261b9a6-47995-twghb] [614_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0006' launched from sub-workflow 'CallGenome'
[2026-06-05T03:28:58.296619Z] [nf-8babd7c9edb556e6a870990f4261b9a6-47995-twghb] [614_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0000' launched from sub-workflow 'CallGenome'
[2026-06-05T03:28:58.296665Z] [nf-8babd7c9edb556e6a870990f4261b9a6-47995-twghb] [614_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_014_chr15_0003' launched from sub-workflow 'CallGenome'
[2026-06-05T03:28:58.297580Z] [nf-8babd7c9edb556e6a870990f4261b9a6-47995-twghb] [614_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0006' from sub-workflow 'CallGenome'
[2026-06-05T03:28:58.297918Z] [nf-8babd7c9edb556e6a870990f4261b9a6-47995-twghb] [614_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0003' from sub-workflow 'CallGenome'
[2026-06-05T03:28:58.298412Z] [nf-8babd7c9edb556e6a870990f4261b9a6-47995-twghb] [614_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_012_chr13_0002' from sub-workflow 'CallGenome'
[2026-06-05T03:28:58.302794Z] [nf-8babd7c9edb556e6a870990f4261b9a6-47995-twghb] [614_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_011_chr12_0006] Task initiated on local node
[2026-06-05T03:28:58.304332Z] [nf-8babd7c9edb556e6a870990f4261b9a6-47995-twghb] [614_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_012_chr13_0002] Task initiated on local node
[2026-06-05T03:28:58.305631Z] [nf-8babd7c9edb556e6a870990f4261b9a6-47995-twghb] [614_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_011_chr12_0003] Task initiated on local node
[2026-06-05T03:28:58.363760Z] [nf-8babd7c9edb556e6a870990f4261b9a6-47995-twghb] [614_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0006' launched from sub-workflow 'CallGenome'
[2026-06-05T03:28:58.363878Z] [nf-8babd7c9edb556e6a870990f4261b9a6-47995-twghb] [614_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_012_chr13_0002' launched from sub-workflow 'CallGenome'
[2026-06-05T03:28:58.364825Z] [nf-8babd7c9edb556e6a870990f4261b9a6-47995-twghb] [614_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_014_chr15_0002' from sub-workflow 'CallGenome'
[2026-06-05T03:28:58.365360Z] [nf-8babd7c9edb556e6a870990f4261b9a6-47995-twghb] [614_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_014_chr15_0003' from sub-workflow 'CallGenome'
[2026-06-05T03:28:58.366263Z] [nf-8babd7c9edb556e6a870990f4261b9a6-47995-twghb] [614_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0003' launched from sub-workflow 'CallGenome'
[2026-06-05T03:28:58.371455Z] [nf-8babd7c9edb556e6a870990f4261b9a6-47995-twghb] [614_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_014_chr15_0003] Task initiated on local node
[2026-06-05T03:28:58.371687Z] [nf-8babd7c9edb556e6a870990f4261b9a6-47995-twghb] [614_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0003' from sub-workflow 'CallGenome'
[2026-06-05T03:28:58.371872Z] [nf-8babd7c9edb556e6a870990f4261b9a6-47995-twghb] [614_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_014_chr15_0002] Task initiated on local node
[2026-06-05T03:28:58.374654Z] [nf-8babd7c9edb556e6a870990f4261b9a6-47995-twghb] [614_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_011_chr12_0003] Task initiated on local node
[2026-06-05T03:28:58.403916Z] [nf-8babd7c9edb556e6a870990f4261b9a6-47995-twghb] [614_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_014_chr15_0003' launched from sub-workflow 'CallGenome'
[2026-06-05T03:28:58.405150Z] [nf-8babd7c9edb556e6a870990f4261b9a6-47995-twghb] [614_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0004' from sub-workflow 'CallGenome'
[2026-06-05T03:28:58.405513Z] [nf-8babd7c9edb556e6a870990f4261b9a6-47995-twghb] [614_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0003' launched from sub-workflow 'CallGenome'
[2026-06-05T03:28:58.408016Z] [nf-8babd7c9edb556e6a870990f4261b9a6-47995-twghb] [614_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_014_chr15_0008' from sub-workflow 'CallGenome'
[2026-06-05T03:28:58.408262Z] [nf-8babd7c9edb556e6a870990f4261b9a6-47995-twghb] [614_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_011_chr12_0004] Task initiated on local node
[2026-06-05T03:28:58.411364Z] [nf-8babd7c9edb556e6a870990f4261b9a6-47995-twghb] [614_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_014_chr15_0008] Task initiated on local node
[2026-06-05T03:28:58.472604Z] [nf-8babd7c9edb556e6a870990f4261b9a6-47995-twghb] [614_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_014_chr15_0008' launched from sub-workflow 'CallGenome'
[2026-06-05T03:28:58.472732Z] [nf-8babd7c9edb556e6a870990f4261b9a6-47995-twghb] [614_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0004' launched from sub-workflow 'CallGenome'
[2026-06-05T03:28:58.473859Z] [nf-8babd7c9edb556e6a870990f4261b9a6-47995-twghb] [614_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_012_chr13_0007' from sub-workflow 'CallGenome'
[2026-06-05T03:28:58.474445Z] [nf-8babd7c9edb556e6a870990f4261b9a6-47995-twghb] [614_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0002' from sub-workflow 'CallGenome'
[2026-06-05T03:28:58.478123Z] [nf-8babd7c9edb556e6a870990f4261b9a6-47995-twghb] [614_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_012_chr13_0007] Task initiated on local node
[2026-06-05T03:28:58.479468Z] [nf-8babd7c9edb556e6a870990f4261b9a6-47995-twghb] [614_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_011_chr12_0002] Task initiated on local node
[2026-06-05T03:28:58.539214Z] [nf-8babd7c9edb556e6a870990f4261b9a6-47995-twghb] [614_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0002' launched from sub-workflow 'CallGenome'
[2026-06-05T03:28:58.539299Z] [nf-8babd7c9edb556e6a870990f4261b9a6-47995-twghb] [614_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_012_chr13_0007' launched from sub-workflow 'CallGenome'
[2026-06-05T03:28:58.540223Z] [nf-8babd7c9edb556e6a870990f4261b9a6-47995-twghb] [614_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0002' from sub-workflow 'CallGenome'
[2026-06-05T03:28:58.540591Z] [nf-8babd7c9edb556e6a870990f4261b9a6-47995-twghb] [614_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_013_chr14_0006' from sub-workflow 'CallGenome'
[2026-06-05T03:28:58.544201Z] [nf-8babd7c9edb556e6a870990f4261b9a6-47995-twghb] [614_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_011_chr12_0002] Task initiated on local node
[2026-06-05T03:28:58.545298Z] [nf-8babd7c9edb556e6a870990f4261b9a6-47995-twghb] [614_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_013_chr14_0006] Task initiated on local node
[2026-06-05T03:28:58.605753Z] [nf-8babd7c9edb556e6a870990f4261b9a6-47995-twghb] [614_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0002' launched from sub-workflow 'CallGenome'
[2026-06-05T03:28:58.606707Z] [nf-8babd7c9edb556e6a870990f4261b9a6-47995-twghb] [614_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0008' from sub-workflow 'CallGenome'
[2026-06-05T03:28:58.610248Z] [nf-8babd7c9edb556e6a870990f4261b9a6-47995-twghb] [614_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_011_chr12_0008] Task initiated on local node
[2026-06-05T03:28:58.671686Z] [nf-8babd7c9edb556e6a870990f4261b9a6-47995-twghb] [614_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0008' launched from sub-workflow 'CallGenome'
[2026-06-05T03:28:58.672591Z] [nf-8babd7c9edb556e6a870990f4261b9a6-47995-twghb] [614_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0008' from sub-workflow 'CallGenome'
[2026-06-05T03:28:58.675985Z] [nf-8babd7c9edb556e6a870990f4261b9a6-47995-twghb] [614_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_011_chr12_0008] Task initiated on local node
[2026-06-05T03:28:58.688691Z] [nf-8babd7c9edb556e6a870990f4261b9a6-47995-twghb] [614_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0009' launched from sub-workflow 'CallGenome'
[2026-06-05T03:28:58.689471Z] [nf-8babd7c9edb556e6a870990f4261b9a6-47995-twghb] [614_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0009' from sub-workflow 'CallGenome'
[2026-06-05T03:28:58.692924Z] [nf-8babd7c9edb556e6a870990f4261b9a6-47995-twghb] [614_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_011_chr12_0009] Task initiated on local node
[2026-06-05T03:28:58.697721Z] [nf-8babd7c9edb556e6a870990f4261b9a6-47995-twghb] [614_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_013_chr14_0007' launched from sub-workflow 'CallGenome'
[2026-06-05T03:28:58.698513Z] [nf-8babd7c9edb556e6a870990f4261b9a6-47995-twghb] [614_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_013_chr14_0007' from sub-workflow 'CallGenome'
[2026-06-05T03:28:58.701788Z] [nf-8babd7c9edb556e6a870990f4261b9a6-47995-twghb] [614_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_013_chr14_0007] Task initiated on local node
[2026-06-05T03:28:58.714814Z] [nf-8babd7c9edb556e6a870990f4261b9a6-47995-twghb] [614_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0008' launched from sub-workflow 'CallGenome'
[2026-06-05T03:28:58.715600Z] [nf-8babd7c9edb556e6a870990f4261b9a6-47995-twghb] [614_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_015_chr16_0005' from sub-workflow 'CallGenome'
[2026-06-05T03:28:58.718908Z] [nf-8babd7c9edb556e6a870990f4261b9a6-47995-twghb] [614_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_015_chr16_0005] Task initiated on local node
[2026-06-05T03:28:58.748709Z] [nf-8babd7c9edb556e6a870990f4261b9a6-47995-twghb] [614_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_013_chr14_0007' launched from sub-workflow 'CallGenome'
[2026-06-05T03:28:58.748816Z] [nf-8babd7c9edb556e6a870990f4261b9a6-47995-twghb] [614_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0009' launched from sub-workflow 'CallGenome'
[2026-06-05T03:28:58.749578Z] [nf-8babd7c9edb556e6a870990f4261b9a6-47995-twghb] [614_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_012_chr13_0001' from sub-workflow 'CallGenome'
[2026-06-05T03:28:58.749931Z] [nf-8babd7c9edb556e6a870990f4261b9a6-47995-twghb] [614_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_012_chr13_0003' from sub-workflow 'CallGenome'
[2026-06-05T03:28:58.754355Z] [nf-8babd7c9edb556e6a870990f4261b9a6-47995-twghb] [614_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_012_chr13_0001] Task initiated on local node
[2026-06-05T03:28:58.755178Z] [nf-8babd7c9edb556e6a870990f4261b9a6-47995-twghb] [614_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_012_chr13_0003] Task initiated on local node
[2026-06-05T03:28:58.782057Z] [nf-8babd7c9edb556e6a870990f4261b9a6-47995-twghb] [614_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_015_chr16_0005' launched from sub-workflow 'CallGenome'
[2026-06-05T03:28:58.782943Z] [nf-8babd7c9edb556e6a870990f4261b9a6-47995-twghb] [614_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_014_chr15_0000' from sub-workflow 'CallGenome'
[2026-06-05T03:28:58.786052Z] [nf-8babd7c9edb556e6a870990f4261b9a6-47995-twghb] [614_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_014_chr15_0000] Task initiated on local node
[2026-06-05T03:28:58.847455Z] [nf-8babd7c9edb556e6a870990f4261b9a6-47995-twghb] [614_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_014_chr15_0000' launched from sub-workflow 'CallGenome'
[2026-06-05T03:28:58.848376Z] [nf-8babd7c9edb556e6a870990f4261b9a6-47995-twghb] [614_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_015_chr16_0006' from sub-workflow 'CallGenome'
[2026-06-05T03:28:58.852034Z] [nf-8babd7c9edb556e6a870990f4261b9a6-47995-twghb] [614_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_015_chr16_0006] Task initiated on local node
[2026-06-05T03:28:58.913263Z] [nf-8babd7c9edb556e6a870990f4261b9a6-47995-twghb] [614_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_015_chr16_0006' launched from sub-workflow 'CallGenome'
[2026-06-05T03:28:58.914105Z] [nf-8babd7c9edb556e6a870990f4261b9a6-47995-twghb] [614_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_013_chr14_0000' from sub-workflow 'CallGenome'
[2026-06-05T03:28:58.917365Z] [nf-8babd7c9edb556e6a870990f4261b9a6-47995-twghb] [614_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_013_chr14_0000] Task initiated on local node
[2026-06-05T03:28:58.978794Z] [nf-8babd7c9edb556e6a870990f4261b9a6-47995-twghb] [614_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_013_chr14_0000' launched from sub-workflow 'CallGenome'
[2026-06-05T03:28:58.979622Z] [nf-8babd7c9edb556e6a870990f4261b9a6-47995-twghb] [614_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_013_chr14_0000' from sub-workflow 'CallGenome'
[2026-06-05T03:28:58.983112Z] [nf-8babd7c9edb556e6a870990f4261b9a6-47995-twghb] [614_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_013_chr14_0000] Task initiated on local node
[2026-06-05T03:28:59.044446Z] [nf-8babd7c9edb556e6a870990f4261b9a6-47995-twghb] [614_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_013_chr14_0000' launched from sub-workflow 'CallGenome'
[2026-06-05T03:28:59.045272Z] [nf-8babd7c9edb556e6a870990f4261b9a6-47995-twghb] [614_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_015_chr16_0000' from sub-workflow 'CallGenome'
[2026-06-05T03:28:59.048655Z] [nf-8babd7c9edb556e6a870990f4261b9a6-47995-twghb] [614_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_015_chr16_0000] Task initiated on local node
[2026-06-05T03:28:59.611995Z] [nf-8babd7c9edb556e6a870990f4261b9a6-47995-twghb] [614_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_012_chr13_0001' launched from sub-workflow 'CallGenome'
[2026-06-05T03:28:59.612843Z] [nf-8babd7c9edb556e6a870990f4261b9a6-47995-twghb] [614_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_015_chr16_0007' from sub-workflow 'CallGenome'
[2026-06-05T03:28:59.615918Z] [nf-8babd7c9edb556e6a870990f4261b9a6-47995-twghb] [614_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_015_chr16_0007] Task initiated on local node
[2026-06-05T03:28:59.677521Z] [nf-8babd7c9edb556e6a870990f4261b9a6-47995-twghb] [614_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_012_chr13_0009' launched from sub-workflow 'CallGenome'
[2026-06-05T03:28:59.677620Z] [nf-8babd7c9edb556e6a870990f4261b9a6-47995-twghb] [614_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_015_chr16_0007' launched from sub-workflow 'CallGenome'
[2026-06-05T03:28:59.677656Z] [nf-8babd7c9edb556e6a870990f4261b9a6-47995-twghb] [614_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_013_chr14_0004' launched from sub-workflow 'CallGenome'
[2026-06-05T03:28:59.678437Z] [nf-8babd7c9edb556e6a870990f4261b9a6-47995-twghb] [614_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_012_chr13_0009' from sub-workflow 'CallGenome'
[2026-06-05T03:28:59.678857Z] [nf-8babd7c9edb556e6a870990f4261b9a6-47995-twghb] [614_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_013_chr14_0004' from sub-workflow 'CallGenome'
[2026-06-05T03:28:59.681127Z] [nf-8babd7c9edb556e6a870990f4261b9a6-47995-twghb] [614_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_013_chr14_0008' from sub-workflow 'CallGenome'
[2026-06-05T03:28:59.683288Z] [nf-8babd7c9edb556e6a870990f4261b9a6-47995-twghb] [614_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_012_chr13_0009] Task initiated on local node
[2026-06-05T03:28:59.683969Z] [nf-8babd7c9edb556e6a870990f4261b9a6-47995-twghb] [614_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_013_chr14_0004] Task initiated on local node
[2026-06-05T03:28:59.686301Z] [nf-8babd7c9edb556e6a870990f4261b9a6-47995-twghb] [614_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_013_chr14_0008] Task initiated on local node
[2026-06-05T03:28:59.747981Z] [nf-8babd7c9edb556e6a870990f4261b9a6-47995-twghb] [614_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_012_chr13_0009' launched from sub-workflow 'CallGenome'
[2026-06-05T03:28:59.748087Z] [nf-8babd7c9edb556e6a870990f4261b9a6-47995-twghb] [614_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_013_chr14_0004' launched from sub-workflow 'CallGenome'
[2026-06-05T03:28:59.748858Z] [nf-8babd7c9edb556e6a870990f4261b9a6-47995-twghb] [614_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0005' from sub-workflow 'CallGenome'
[2026-06-05T03:28:59.749211Z] [nf-8babd7c9edb556e6a870990f4261b9a6-47995-twghb] [614_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_015_chr16_0002' from sub-workflow 'CallGenome'
[2026-06-05T03:28:59.752667Z] [nf-8babd7c9edb556e6a870990f4261b9a6-47995-twghb] [614_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_011_chr12_0005] Task initiated on local node
[2026-06-05T03:28:59.753755Z] [nf-8babd7c9edb556e6a870990f4261b9a6-47995-twghb] [614_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_015_chr16_0002] Task initiated on local node
[2026-06-05T03:28:59.813973Z] [nf-8babd7c9edb556e6a870990f4261b9a6-47995-twghb] [614_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0005' launched from sub-workflow 'CallGenome'
[2026-06-05T03:28:59.814808Z] [nf-8babd7c9edb556e6a870990f4261b9a6-47995-twghb] [614_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0005' from sub-workflow 'CallGenome'
[2026-06-05T03:28:59.818038Z] [nf-8babd7c9edb556e6a870990f4261b9a6-47995-twghb] [614_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_011_chr12_0005] Task initiated on local node
[2026-06-05T03:28:59.879619Z] [nf-8babd7c9edb556e6a870990f4261b9a6-47995-twghb] [614_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0005' launched from sub-workflow 'CallGenome'
[2026-06-05T03:28:59.880494Z] [nf-8babd7c9edb556e6a870990f4261b9a6-47995-twghb] [614_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_012_chr13_0000' from sub-workflow 'CallGenome'
[2026-06-05T03:28:59.884243Z] [nf-8babd7c9edb556e6a870990f4261b9a6-47995-twghb] [614_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_012_chr13_0000] Task initiated on local node
[2026-06-05T03:28:59.945500Z] [nf-8babd7c9edb556e6a870990f4261b9a6-47995-twghb] [614_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_012_chr13_0000' launched from sub-workflow 'CallGenome'
[2026-06-05T03:28:59.946268Z] [nf-8babd7c9edb556e6a870990f4261b9a6-47995-twghb] [614_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_012_chr13_0000' from sub-workflow 'CallGenome'
[2026-06-05T03:28:59.949471Z] [nf-8babd7c9edb556e6a870990f4261b9a6-47995-twghb] [614_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_012_chr13_0000] Task initiated on local node
[2026-06-05T03:28:59.962186Z] [nf-8babd7c9edb556e6a870990f4261b9a6-47995-twghb] [614_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_014_chr15_0002' launched from sub-workflow 'CallGenome'
[2026-06-05T03:28:59.962913Z] [nf-8babd7c9edb556e6a870990f4261b9a6-47995-twghb] [614_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_012_chr13_0004' from sub-workflow 'CallGenome'
[2026-06-05T03:28:59.966116Z] [nf-8babd7c9edb556e6a870990f4261b9a6-47995-twghb] [614_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_012_chr13_0004] Task initiated on local node
[2026-06-05T03:28:59.995470Z] [nf-8babd7c9edb556e6a870990f4261b9a6-47995-twghb] [614_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_012_chr13_0000' launched from sub-workflow 'CallGenome'
[2026-06-05T03:28:59.996435Z] [nf-8babd7c9edb556e6a870990f4261b9a6-47995-twghb] [614_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_014_chr15_0004' from sub-workflow 'CallGenome'
[2026-06-05T03:29:00.000341Z] [nf-8babd7c9edb556e6a870990f4261b9a6-47995-twghb] [614_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_014_chr15_0004] Task initiated on local node
[2026-06-05T03:29:00.211726Z] [nf-8babd7c9edb556e6a870990f4261b9a6-47995-twghb] [614_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0011' launched from sub-workflow 'CallGenome'
[2026-06-05T03:29:00.212701Z] [nf-8babd7c9edb556e6a870990f4261b9a6-47995-twghb] [614_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0011' from sub-workflow 'CallGenome'
[2026-06-05T03:29:00.216465Z] [nf-8babd7c9edb556e6a870990f4261b9a6-47995-twghb] [614_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_011_chr12_0011] Task initiated on local node
[2026-06-05T03:29:00.277831Z] [nf-8babd7c9edb556e6a870990f4261b9a6-47995-twghb] [614_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0011' launched from sub-workflow 'CallGenome'
[2026-06-05T03:29:00.278752Z] [nf-8babd7c9edb556e6a870990f4261b9a6-47995-twghb] [614_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_015_chr16_0005' from sub-workflow 'CallGenome'
[2026-06-05T03:29:00.282533Z] [nf-8babd7c9edb556e6a870990f4261b9a6-47995-twghb] [614_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_015_chr16_0005] Task initiated on local node
[2026-06-05T03:29:00.343753Z] [nf-8babd7c9edb556e6a870990f4261b9a6-47995-twghb] [614_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_015_chr16_0005' launched from sub-workflow 'CallGenome'
[2026-06-05T03:29:00.344542Z] [nf-8babd7c9edb556e6a870990f4261b9a6-47995-twghb] [614_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0001' from sub-workflow 'CallGenome'
[2026-06-05T03:29:00.348428Z] [nf-8babd7c9edb556e6a870990f4261b9a6-47995-twghb] [614_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_011_chr12_0001] Task initiated on local node
[2026-06-05T03:29:00.409669Z] [nf-8babd7c9edb556e6a870990f4261b9a6-47995-twghb] [614_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0001' launched from sub-workflow 'CallGenome'
[2026-06-05T03:29:00.410637Z] [nf-8babd7c9edb556e6a870990f4261b9a6-47995-twghb] [614_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0001' from sub-workflow 'CallGenome'
[2026-06-05T03:29:00.414630Z] [nf-8babd7c9edb556e6a870990f4261b9a6-47995-twghb] [614_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_011_chr12_0001] Task initiated on local node
[2026-06-05T03:29:00.475851Z] [nf-8babd7c9edb556e6a870990f4261b9a6-47995-twghb] [614_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0001' launched from sub-workflow 'CallGenome'
[2026-06-05T03:29:00.476728Z] [nf-8babd7c9edb556e6a870990f4261b9a6-47995-twghb] [614_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_014_chr15_0002' from sub-workflow 'CallGenome'
[2026-06-05T03:29:00.480346Z] [nf-8babd7c9edb556e6a870990f4261b9a6-47995-twghb] [614_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_014_chr15_0002] Task initiated on local node
[2026-06-05T03:29:00.541569Z] [nf-8babd7c9edb556e6a870990f4261b9a6-47995-twghb] [614_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_014_chr15_0002' launched from sub-workflow 'CallGenome'
[2026-06-05T03:29:00.542416Z] [nf-8babd7c9edb556e6a870990f4261b9a6-47995-twghb] [614_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_012_chr13_0006' from sub-workflow 'CallGenome'
[2026-06-05T03:29:00.545843Z] [nf-8babd7c9edb556e6a870990f4261b9a6-47995-twghb] [614_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_012_chr13_0006] Task initiated on local node
[2026-06-05T03:29:00.757669Z] [nf-8babd7c9edb556e6a870990f4261b9a6-47995-twghb] [614_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_012_chr13_0003' launched from sub-workflow 'CallGenome'
[2026-06-05T03:29:00.757808Z] [nf-8babd7c9edb556e6a870990f4261b9a6-47995-twghb] [614_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_015_chr16_0002' launched from sub-workflow 'CallGenome'
[2026-06-05T03:29:00.758670Z] [nf-8babd7c9edb556e6a870990f4261b9a6-47995-twghb] [614_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_012_chr13_0003' from sub-workflow 'CallGenome'
[2026-06-05T03:29:00.759042Z] [nf-8babd7c9edb556e6a870990f4261b9a6-47995-twghb] [614_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_015_chr16_0002' from sub-workflow 'CallGenome'
[2026-06-05T03:29:00.763212Z] [nf-8babd7c9edb556e6a870990f4261b9a6-47995-twghb] [614_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_015_chr16_0002] Task initiated on local node
[2026-06-05T03:29:00.803953Z] [nf-8babd7c9edb556e6a870990f4261b9a6-47995-twghb] [614_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_012_chr13_0003] Task initiated on local node
[2026-06-05T03:29:00.824125Z] [nf-8babd7c9edb556e6a870990f4261b9a6-47995-twghb] [614_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_015_chr16_0002' launched from sub-workflow 'CallGenome'
[2026-06-05T03:29:00.824245Z] [nf-8babd7c9edb556e6a870990f4261b9a6-47995-twghb] [614_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_012_chr13_0003' launched from sub-workflow 'CallGenome'
[2026-06-05T03:29:00.825040Z] [nf-8babd7c9edb556e6a870990f4261b9a6-47995-twghb] [614_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_013_chr14_0003' from sub-workflow 'CallGenome'
[2026-06-05T03:29:00.825649Z] [nf-8babd7c9edb556e6a870990f4261b9a6-47995-twghb] [614_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_015_chr16_0003' from sub-workflow 'CallGenome'
[2026-06-05T03:29:00.830643Z] [nf-8babd7c9edb556e6a870990f4261b9a6-47995-twghb] [614_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_015_chr16_0003] Task initiated on local node
[2026-06-05T03:29:00.831667Z] [nf-8babd7c9edb556e6a870990f4261b9a6-47995-twghb] [614_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_013_chr14_0003] Task initiated on local node
[2026-06-05T03:29:00.833540Z] [nf-8babd7c9edb556e6a870990f4261b9a6-47995-twghb] [614_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_013_chr14_0006' launched from sub-workflow 'CallGenome'
[2026-06-05T03:29:00.834185Z] [nf-8babd7c9edb556e6a870990f4261b9a6-47995-twghb] [614_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_012_chr13_0001' from sub-workflow 'CallGenome'
[2026-06-05T03:29:00.837622Z] [nf-8babd7c9edb556e6a870990f4261b9a6-47995-twghb] [614_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_012_chr13_0001] Task initiated on local node
[2026-06-05T03:29:00.898967Z] [nf-8babd7c9edb556e6a870990f4261b9a6-47995-twghb] [614_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_015_chr16_0003' launched from sub-workflow 'CallGenome'
[2026-06-05T03:29:00.899071Z] [nf-8babd7c9edb556e6a870990f4261b9a6-47995-twghb] [614_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_012_chr13_0001' launched from sub-workflow 'CallGenome'
[2026-06-05T03:29:00.899831Z] [nf-8babd7c9edb556e6a870990f4261b9a6-47995-twghb] [614_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_015_chr16_0003' from sub-workflow 'CallGenome'
[2026-06-05T03:29:00.900352Z] [nf-8babd7c9edb556e6a870990f4261b9a6-47995-twghb] [614_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0010' from sub-workflow 'CallGenome'
[2026-06-05T03:29:00.904610Z] [nf-8babd7c9edb556e6a870990f4261b9a6-47995-twghb] [614_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_015_chr16_0003] Task initiated on local node
[2026-06-05T03:29:00.906745Z] [nf-8babd7c9edb556e6a870990f4261b9a6-47995-twghb] [614_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_011_chr12_0010] Task initiated on local node
[2026-06-05T03:29:00.965917Z] [nf-8babd7c9edb556e6a870990f4261b9a6-47995-twghb] [614_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_015_chr16_0003' launched from sub-workflow 'CallGenome'
[2026-06-05T03:29:00.966664Z] [nf-8babd7c9edb556e6a870990f4261b9a6-47995-twghb] [614_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_014_chr15_0007' from sub-workflow 'CallGenome'
[2026-06-05T03:29:00.970740Z] [nf-8babd7c9edb556e6a870990f4261b9a6-47995-twghb] [614_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_014_chr15_0007] Task initiated on local node
[2026-06-05T03:29:01.583740Z] [nf-8babd7c9edb556e6a870990f4261b9a6-47995-twghb] [614_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_012_chr13_0004' launched from sub-workflow 'CallGenome'
[2026-06-05T03:29:01.584548Z] [nf-8babd7c9edb556e6a870990f4261b9a6-47995-twghb] [614_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_013_chr14_0001' from sub-workflow 'CallGenome'
[2026-06-05T03:29:01.588654Z] [nf-8babd7c9edb556e6a870990f4261b9a6-47995-twghb] [614_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_013_chr14_0001] Task initiated on local node
[2026-06-05T03:29:01.649877Z] [nf-8babd7c9edb556e6a870990f4261b9a6-47995-twghb] [614_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_012_chr13_0006' launched from sub-workflow 'CallGenome'
[2026-06-05T03:29:01.650785Z] [nf-8babd7c9edb556e6a870990f4261b9a6-47995-twghb] [614_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_013_chr14_0006' from sub-workflow 'CallGenome'
[2026-06-05T03:29:01.654530Z] [nf-8babd7c9edb556e6a870990f4261b9a6-47995-twghb] [614_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_013_chr14_0006] Task initiated on local node
[2026-06-05T03:29:01.715536Z] [nf-8babd7c9edb556e6a870990f4261b9a6-47995-twghb] [614_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_013_chr14_0006' launched from sub-workflow 'CallGenome'
[2026-06-05T03:29:01.717145Z] [nf-8babd7c9edb556e6a870990f4261b9a6-47995-twghb] [614_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_012_chr13_0008' from sub-workflow 'CallGenome'
[2026-06-05T03:29:01.717570Z] [nf-8babd7c9edb556e6a870990f4261b9a6-47995-twghb] [614_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_015_chr16_0000' launched from sub-workflow 'CallGenome'
[2026-06-05T03:29:01.718706Z] [nf-8babd7c9edb556e6a870990f4261b9a6-47995-twghb] [614_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_015_chr16_0000' from sub-workflow 'CallGenome'
[2026-06-05T03:29:01.723288Z] [nf-8babd7c9edb556e6a870990f4261b9a6-47995-twghb] [614_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_015_chr16_0000] Task initiated on local node
[2026-06-05T03:29:01.723492Z] [nf-8babd7c9edb556e6a870990f4261b9a6-47995-twghb] [614_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_012_chr13_0008] Task initiated on local node
[2026-06-05T03:29:01.751554Z] [nf-8babd7c9edb556e6a870990f4261b9a6-47995-twghb] [614_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_013_chr14_0003' launched from sub-workflow 'CallGenome'
[2026-06-05T03:29:01.752355Z] [nf-8babd7c9edb556e6a870990f4261b9a6-47995-twghb] [614_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_012_chr13_0006' from sub-workflow 'CallGenome'
[2026-06-05T03:29:01.756183Z] [nf-8babd7c9edb556e6a870990f4261b9a6-47995-twghb] [614_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_012_chr13_0006] Task initiated on local node
[2026-06-05T03:29:01.756454Z] [nf-8babd7c9edb556e6a870990f4261b9a6-47995-twghb] [614_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_015_chr16_0000' launched from sub-workflow 'CallGenome'
[2026-06-05T03:29:01.756914Z] [nf-8babd7c9edb556e6a870990f4261b9a6-47995-twghb] [614_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_013_chr14_0003' from sub-workflow 'CallGenome'
[2026-06-05T03:29:01.760729Z] [nf-8babd7c9edb556e6a870990f4261b9a6-47995-twghb] [614_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_013_chr14_0003] Task initiated on local node
[2026-06-05T03:29:01.789375Z] [nf-8babd7c9edb556e6a870990f4261b9a6-47995-twghb] [614_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_012_chr13_0006' launched from sub-workflow 'CallGenome'
[2026-06-05T03:29:01.790213Z] [nf-8babd7c9edb556e6a870990f4261b9a6-47995-twghb] [614_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_015_chr16_0001' from sub-workflow 'CallGenome'
[2026-06-05T03:29:01.794031Z] [nf-8babd7c9edb556e6a870990f4261b9a6-47995-twghb] [614_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_015_chr16_0001] Task initiated on local node
[2026-06-05T03:29:01.794513Z] [nf-8babd7c9edb556e6a870990f4261b9a6-47995-twghb] [614_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_013_chr14_0003' launched from sub-workflow 'CallGenome'
[2026-06-05T03:29:01.795064Z] [nf-8babd7c9edb556e6a870990f4261b9a6-47995-twghb] [614_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_012_chr13_0004' from sub-workflow 'CallGenome'
[2026-06-05T03:29:01.798593Z] [nf-8babd7c9edb556e6a870990f4261b9a6-47995-twghb] [614_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_012_chr13_0004] Task initiated on local node
[2026-06-05T03:29:01.859712Z] [nf-8babd7c9edb556e6a870990f4261b9a6-47995-twghb] [614_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_012_chr13_0004' launched from sub-workflow 'CallGenome'
[2026-06-05T03:29:02.075059Z] [nf-8babd7c9edb556e6a870990f4261b9a6-47995-twghb] [614_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_013_chr14_0008' launched from sub-workflow 'CallGenome'
[2026-06-05T03:29:02.075831Z] [nf-8babd7c9edb556e6a870990f4261b9a6-47995-twghb] [614_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_013_chr14_0008' from sub-workflow 'CallGenome'
[2026-06-05T03:29:02.079160Z] [nf-8babd7c9edb556e6a870990f4261b9a6-47995-twghb] [614_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_013_chr14_0008] Task initiated on local node
[2026-06-05T03:29:02.140544Z] [nf-8babd7c9edb556e6a870990f4261b9a6-47995-twghb] [614_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_013_chr14_0008' launched from sub-workflow 'CallGenome'
[2026-06-05T03:29:02.255288Z] [nf-8babd7c9edb556e6a870990f4261b9a6-47995-twghb] [614_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_014_chr15_0004' launched from sub-workflow 'CallGenome'
[2026-06-05T03:29:02.255970Z] [nf-8babd7c9edb556e6a870990f4261b9a6-47995-twghb] [614_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_014_chr15_0004' from sub-workflow 'CallGenome'
[2026-06-05T03:29:02.259472Z] [nf-8babd7c9edb556e6a870990f4261b9a6-47995-twghb] [614_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_014_chr15_0004] Task initiated on local node
[2026-06-05T03:29:02.320797Z] [nf-8babd7c9edb556e6a870990f4261b9a6-47995-twghb] [614_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_014_chr15_0004' launched from sub-workflow 'CallGenome'
[2026-06-05T03:29:02.586166Z] [nf-8babd7c9edb556e6a870990f4261b9a6-47995-twghb] [614_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_013_chr14_0001' launched from sub-workflow 'CallGenome'
[2026-06-05T03:29:02.586847Z] [nf-8babd7c9edb556e6a870990f4261b9a6-47995-twghb] [614_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_013_chr14_0001' from sub-workflow 'CallGenome'
[2026-06-05T03:29:02.590673Z] [nf-8babd7c9edb556e6a870990f4261b9a6-47995-twghb] [614_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_013_chr14_0001] Task initiated on local node
[2026-06-05T03:29:02.651827Z] [nf-8babd7c9edb556e6a870990f4261b9a6-47995-twghb] [614_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_013_chr14_0001' launched from sub-workflow 'CallGenome'
[2026-06-05T03:29:03.168119Z] [nf-8babd7c9edb556e6a870990f4261b9a6-47995-twghb] [614_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_014_chr15_0007' launched from sub-workflow 'CallGenome'
[2026-06-05T03:29:03.168803Z] [nf-8babd7c9edb556e6a870990f4261b9a6-47995-twghb] [614_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_014_chr15_0007' from sub-workflow 'CallGenome'
[2026-06-05T03:29:03.173111Z] [nf-8babd7c9edb556e6a870990f4261b9a6-47995-twghb] [614_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_014_chr15_0007] Task initiated on local node
[2026-06-05T03:29:03.201604Z] [nf-8babd7c9edb556e6a870990f4261b9a6-47995-twghb] [614_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0010' launched from sub-workflow 'CallGenome'
[2026-06-05T03:29:03.202264Z] [nf-8babd7c9edb556e6a870990f4261b9a6-47995-twghb] [614_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0010' from sub-workflow 'CallGenome'
[2026-06-05T03:29:03.205463Z] [nf-8babd7c9edb556e6a870990f4261b9a6-47995-twghb] [614_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_011_chr12_0010] Task initiated on local node
[2026-06-05T03:29:03.206363Z] [nf-8babd7c9edb556e6a870990f4261b9a6-47995-twghb] [614_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_014_chr15_0007' launched from sub-workflow 'CallGenome'
[2026-06-05T03:29:03.270672Z] [nf-8babd7c9edb556e6a870990f4261b9a6-47995-twghb] [614_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0010' launched from sub-workflow 'CallGenome'
[2026-06-05T03:29:03.435302Z] [nf-8babd7c9edb556e6a870990f4261b9a6-47995-twghb] [614_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_012_chr13_0008' launched from sub-workflow 'CallGenome'
[2026-06-05T03:29:03.435926Z] [nf-8babd7c9edb556e6a870990f4261b9a6-47995-twghb] [614_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_012_chr13_0008' from sub-workflow 'CallGenome'
[2026-06-05T03:29:03.439257Z] [nf-8babd7c9edb556e6a870990f4261b9a6-47995-twghb] [614_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_012_chr13_0008] Task initiated on local node
[2026-06-05T03:29:03.500401Z] [nf-8babd7c9edb556e6a870990f4261b9a6-47995-twghb] [614_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_012_chr13_0008' launched from sub-workflow 'CallGenome'
[2026-06-05T03:29:03.715083Z] [nf-8babd7c9edb556e6a870990f4261b9a6-47995-twghb] [614_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_015_chr16_0001' launched from sub-workflow 'CallGenome'
[2026-06-05T03:29:03.715638Z] [nf-8babd7c9edb556e6a870990f4261b9a6-47995-twghb] [614_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_015_chr16_0001' from sub-workflow 'CallGenome'
[2026-06-05T03:29:03.718629Z] [nf-8babd7c9edb556e6a870990f4261b9a6-47995-twghb] [614_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_015_chr16_0001] Task initiated on local node
[2026-06-05T03:29:03.780116Z] [nf-8babd7c9edb556e6a870990f4261b9a6-47995-twghb] [614_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_015_chr16_0001' launched from sub-workflow 'CallGenome'
[2026-06-05T03:29:03.780526Z] [nf-8babd7c9edb556e6a870990f4261b9a6-47995-twghb] [614_1] [TaskManager] Completed command task: 'CallGenome+completedAllGenomeSegments' launched from sub-workflow 'CallGenome'
[2026-06-05T03:29:03.780681Z] [nf-8babd7c9edb556e6a870990f4261b9a6-47995-twghb] [614_1] [TaskManager] Launching command task: 'CallGenome+mergeRunStats' from sub-workflow 'CallGenome'
[2026-06-05T03:29:03.781006Z] [nf-8babd7c9edb556e6a870990f4261b9a6-47995-twghb] [614_1] [TaskManager] Launching command task: 'CallGenome+Indel_concat_vcf' from sub-workflow 'CallGenome'
[2026-06-05T03:29:03.781312Z] [nf-8babd7c9edb556e6a870990f4261b9a6-47995-twghb] [614_1] [TaskManager] Launching command task: 'CallGenome+SNV_concat_vcf' from sub-workflow 'CallGenome'
[2026-06-05T03:29:03.785741Z] [nf-8babd7c9edb556e6a870990f4261b9a6-47995-twghb] [614_1] [TaskRunner:CallGenome+Indel_concat_vcf] Task initiated on local node
[2026-06-05T03:29:03.787448Z] [nf-8babd7c9edb556e6a870990f4261b9a6-47995-twghb] [614_1] [TaskRunner:CallGenome+SNV_concat_vcf] Task initiated on local node
[2026-06-05T03:29:03.788722Z] [nf-8babd7c9edb556e6a870990f4261b9a6-47995-twghb] [614_1] [TaskRunner:CallGenome+mergeRunStats] Task initiated on local node
[2026-06-05T03:29:03.814763Z] [nf-8babd7c9edb556e6a870990f4261b9a6-47995-twghb] [614_1] [TaskManager] Completed command task: 'CallGenome+Indel_concat_vcf' launched from sub-workflow 'CallGenome'
[2026-06-05T03:29:03.814837Z] [nf-8babd7c9edb556e6a870990f4261b9a6-47995-twghb] [614_1] [TaskManager] Completed command task: 'CallGenome+SNV_concat_vcf' launched from sub-workflow 'CallGenome'
[2026-06-05T03:29:03.815056Z] [nf-8babd7c9edb556e6a870990f4261b9a6-47995-twghb] [614_1] [TaskManager] Launching command task: 'CallGenome+SNV_index_vcf' from sub-workflow 'CallGenome'
[2026-06-05T03:29:03.815400Z] [nf-8babd7c9edb556e6a870990f4261b9a6-47995-twghb] [614_1] [TaskManager] Launching command task: 'CallGenome+Indel_index_vcf' from sub-workflow 'CallGenome'
[2026-06-05T03:29:03.818613Z] [nf-8babd7c9edb556e6a870990f4261b9a6-47995-twghb] [614_1] [TaskRunner:CallGenome+SNV_index_vcf] Task initiated on local node
[2026-06-05T03:29:03.819371Z] [nf-8babd7c9edb556e6a870990f4261b9a6-47995-twghb] [614_1] [TaskManager] Completed command task: 'CallGenome+mergeRunStats' launched from sub-workflow 'CallGenome'
[2026-06-05T03:29:03.819650Z] [nf-8babd7c9edb556e6a870990f4261b9a6-47995-twghb] [614_1] [TaskRunner:CallGenome+Indel_index_vcf] Task initiated on local node
[2026-06-05T03:29:03.851334Z] [nf-8babd7c9edb556e6a870990f4261b9a6-47995-twghb] [614_1] [TaskManager] Completed command task: 'CallGenome+Indel_index_vcf' launched from sub-workflow 'CallGenome'
[2026-06-05T03:29:03.851405Z] [nf-8babd7c9edb556e6a870990f4261b9a6-47995-twghb] [614_1] [TaskManager] Completed command task: 'CallGenome+SNV_index_vcf' launched from sub-workflow 'CallGenome'
[2026-06-05T03:29:03.851603Z] [nf-8babd7c9edb556e6a870990f4261b9a6-47995-twghb] [614_1] [TaskManager] Launching command task: 'CallGenome+removeTmpDir' from sub-workflow 'CallGenome'
[2026-06-05T03:29:03.854455Z] [nf-8babd7c9edb556e6a870990f4261b9a6-47995-twghb] [614_1] [TaskRunner:CallGenome+removeTmpDir] Task initiated on local node
[2026-06-05T03:29:03.883856Z] [nf-8babd7c9edb556e6a870990f4261b9a6-47995-twghb] [614_1] [TaskManager] Completed command task: 'CallGenome+removeTmpDir' launched from sub-workflow 'CallGenome'
[2026-06-05T03:29:05.852749Z] [nf-8babd7c9edb556e6a870990f4261b9a6-47995-twghb] [614_1] [TaskManager] Completed sub-workflow task: 'CallGenome' launched from master workflow
[2026-06-05T03:29:14.105318Z] [nf-8babd7c9edb556e6a870990f4261b9a6-47995-twghb] [614_1] [WorkflowRunner] Strelka somatic workflow successfully completed.
[2026-06-05T03:29:14.105318Z] [nf-8babd7c9edb556e6a870990f4261b9a6-47995-twghb] [614_1] [WorkflowRunner] 
[2026-06-05T03:29:14.105318Z] [nf-8babd7c9edb556e6a870990f4261b9a6-47995-twghb] [614_1] [WorkflowRunner] 	workflow version: 2.9.10
[2026-06-05T03:29:14.105397Z] [nf-8babd7c9edb556e6a870990f4261b9a6-47995-twghb] [614_1] [WorkflowRunner] 
[2026-06-05T03:29:14.105406Z] [nf-8babd7c9edb556e6a870990f4261b9a6-47995-twghb] [614_1] [WorkflowRunner] Workflow successfully completed all tasks
[2026-06-05T03:29:14.105414Z] [nf-8babd7c9edb556e6a870990f4261b9a6-47995-twghb] [614_1] [WorkflowRunner] Elapsed time for full workflow: 18 sec