.command.sh - Workdir - DAQ:GERMLINE_CNV:ClusterPanelRegions (REGRESSION)

File Info

Filename: .command.sh
Full Path: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/07/77a3c816928cf056a2a709ea29f531/.command.sh
Size: 232 bytes
Task: DAQ:GERMLINE_CNV:ClusterPanelRegions (REGRESSION)
Attempt

Content

#!/bin/bash -Ceuo pipefail
cnv_pipe cluster-panel-regions \
        altera_v3_panel.bed \
        MANE.GRCh38.v1.4.ensembl_genomic.gff \
        GCA_000001405.15_GRCh38_no_alt_analysis_set.fna.gz.fai \
        clustered_panel.csv \