cmdline: /opt/conda/share/sentieon-202308.03-3/libexec/driver -t 31 -r Homo_sapiens_assembly38.fasta -i Sig_18_Blood.md.bam --interval xgen-exome-hyb-panel-v2-targets-hg38_AND_altera_v3_targets_postQC_hg38_AND_foresight_clarity.bed --algo QualCal -k dbsnp_146.hg38.vcf.gz -k Mills_and_1000G_gold_standard.indels.hg38.vcf.gz -k Homo_sapiens_assembly38.known_indels.vcf.gz Sig_18_Blood.table
This software is licensed to bgold@natera.com by Sentieon Inc.
progress 5% @chr1:119911554, elapsed 0.0s, est remaining 0.6s, peak mem 164MB, user 0.0s, sys 0.0s, output queue size 5589
progress 10% @chr2:20037316, elapsed 0.1s, est remaining 0.6s, peak mem 164MB, user 0.0s, sys 0.0s, output queue size 7580
progress 15% @chr2:189052172, elapsed 0.1s, est remaining 0.5s, peak mem 164MB, user 0.0s, sys 0.0s, output queue size 17971
progress 20% @chr3:97933694, elapsed 0.1s, est remaining 0.5s, peak mem 166MB, user 0.0s, sys 0.0s, output queue size 1383
progress 25% @chr4:88457270, elapsed 0.2s, est remaining 0.5s, peak mem 166MB, user 0.0s, sys 0.0s, output queue size 11628
progress 30% @chr5:147395559, elapsed 0.2s, est remaining 0.4s, peak mem 166MB, user 0.0s, sys 0.0s, output queue size 21666
progress 35% @chr6:127119291, elapsed 0.2s, est remaining 0.4s, peak mem 166MB, user 0.0s, sys 0.0s, output queue size 31622
progress 40% @chr7:127582014, elapsed 0.2s, est remaining 0.4s, peak mem 166MB, user 0.0s, sys 0.0s, output queue size 41103
progress 45% @chr9:2039466, elapsed 0.3s, est remaining 0.3s, peak mem 259MB, user 0.0s, sys 0.0s, output queue size 50478
progress 50% @chr10:32284698, elapsed 0.3s, est remaining 0.3s, peak mem 292MB, user 0.0s, sys 0.0s, output queue size 60407
progress 55% @chr11:48245104, elapsed 0.3s, est remaining 0.3s, peak mem 301MB, user 0.0s, sys 0.0s, output queue size 70871
progress 60% @chr12:21845603, elapsed 0.4s, est remaining 0.2s, peak mem 307MB, user 0.0s, sys 0.0s, output queue size 1222
progress 65% @chr13:49220338, elapsed 0.4s, est remaining 0.2s, peak mem 307MB, user 0.0s, sys 0.0s, output queue size 12270
progress 70% @chr15:42684116, elapsed 0.4s, est remaining 0.2s, peak mem 307MB, user 0.0s, sys 0.0s, output queue size 22323
progress 75% @chr16:30772089, elapsed 0.4s, est remaining 0.1s, peak mem 307MB, user 0.0s, sys 0.0s, output queue size 31884
progress 80% @chr17:42422627, elapsed 0.5s, est remaining 0.1s, peak mem 307MB, user 0.0s, sys 0.0s, output queue size 42562
progress 85% @chr19:5657241, elapsed 0.5s, est remaining 0.1s, peak mem 326MB, user 0.0s, sys 0.0s, output queue size 52975
progress 90% @chr19:55621751, elapsed 0.5s, est remaining 0.1s, peak mem 334MB, user 0.0s, sys 0.0s, output queue size 62474
progress 95% @chr22:37069073, elapsed 0.9s, est remaining 0.0s, peak mem 2521MB, user 7.6s, sys 1.7s, output queue size 3247
progress 100% @chr21:41501693, elapsed 0.9s, est remaining 0.0s, peak mem 2521MB, user 7.9s, sys 1.8s, output queue size 12805
sw version: sentieon-genomics-202308.03
os version: Linux 6.12.88
cpu vendor: GenuineIntel
 signature: 000c06f2
  features: 1f8bfbff fffab20b
  extended: f1bf07ab 1a407f7e
  amd bits: 2c100800 00000121
     brand: Intel(R) Xeon(R) Platinum 8559C
threads: 31 max 192
algo: QualCal
license: sentieon:QualCal=31
input file size: 52290594
reads: 1001133
contig: 201779 intervals 37922265 bases
advance: 208647 calls 2.125 user 0.132 sys 2.555 real
done: 1 calls 0.330 user 0.050 sys 0.384 real
execute: 1 calls 0.014 user 0.001 sys 0.951 real
fetch_reads: 208647 calls 0.098 user 0.000 sys 0.165 real
fetch_ref: 2072 calls 0.004 user 0.008 sys 0.018 real
fetch_vcf: 2072 calls 1.058 user 0.059 sys 1.139 real
idle: 95 calls 0.011 user 0.001 sys 32.097 real
init: 1 calls 0.000 user 0.000 sys 0.000 real
update: 2257 calls 5.505 user 1.539 sys 7.544 real
overall: 2643644416 mem 11.005 user 6.132 sys 2.397 real
ls: cannot access '*.table.post': No such file or directory
ls: cannot access '*.recalibrated.bam': No such file or directory
ls: cannot access '*.recalibrated.bam.bai': No such file or directory
ls: cannot access '*.csv': No such file or directory
ls: cannot access '*.pdf': No such file or directory