Downloading: s3://natera-platform-sandbox/pipeline-resources/ngi-igenomes/igenomes/Homo_sapiens/GATK/GRCh38/Sequence/WholeGenomeFasta/Homo_sapiens_assembly38.fasta
  Downloading: s3://natera-platform-sandbox/pipeline-resources/AIH/dna_daq/stored-normals/reference-NA12878-downsampled-500k.bam
  Downloading: s3://natera-platform-sandbox/pipeline-resources/ngi-igenomes/igenomes/Homo_sapiens/GATK/GRCh38/Annotation/intervals/altera_padded_intervals/scatter/chr9_110971973-110972217.bed.gz
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/d1/c1b7d2a298a8b5bbba54ad67dec5b6/HCC1395_tumor.recalibrated.bam.bai
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/0a/e7f81ff1b5bec98d9608756d4a12ae/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/d1/c1b7d2a298a8b5bbba54ad67dec5b6/HCC1395_tumor.recalibrated.bam
  Downloading: s3://natera-platform-sandbox/pipeline-resources/ngi-igenomes/igenomes/Homo_sapiens/GATK/GRCh38/Sequence/WholeGenomeFasta/Homo_sapiens_assembly38.fasta.fai
  Downloading: s3://natera-platform-sandbox/pipeline-resources/AIH/dna_daq/stored-normals/reference-NA12878-downsampled-500k.bam.bai
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/0a/e7f81ff1b5bec98d9608756d4a12ae/.command.run
  Downloading: s3://natera-platform-sandbox/pipeline-resources/ngi-igenomes/igenomes/Homo_sapiens/GATK/GRCh38/Annotation/intervals/altera_padded_intervals/scatter/chr9_110971973-110972217.bed.gz.tbi
==> STAGING COMPLETE (10 inputs)


Successfully created workflow run script.
To execute the workflow, run the following script and set appropriate options:

/var/tmp/strelka/runWorkflow.py
[2026-06-05T03:28:39.116343Z] [nf-0ae7f81ff1b5bec98d9608756d4a12ae-4ad67-rxjms] [758_1] [WorkflowRunner] Initiating pyFlow run
[2026-06-05T03:28:39.118164Z] [nf-0ae7f81ff1b5bec98d9608756d4a12ae-4ad67-rxjms] [758_1] [WorkflowRunner] pyFlowClientWorkflowClass: StrelkaSomaticWorkflow
[2026-06-05T03:28:39.118177Z] [nf-0ae7f81ff1b5bec98d9608756d4a12ae-4ad67-rxjms] [758_1] [WorkflowRunner] pyFlowVersion: 1.1.20
[2026-06-05T03:28:39.118182Z] [nf-0ae7f81ff1b5bec98d9608756d4a12ae-4ad67-rxjms] [758_1] [WorkflowRunner] pythonVersion: 2.7.15.final.0
[2026-06-05T03:28:39.118188Z] [nf-0ae7f81ff1b5bec98d9608756d4a12ae-4ad67-rxjms] [758_1] [WorkflowRunner] WorkingDir: '/tmp/nxf.XXXXcrJvKr'
[2026-06-05T03:28:39.118193Z] [nf-0ae7f81ff1b5bec98d9608756d4a12ae-4ad67-rxjms] [758_1] [WorkflowRunner] ProcessCmdLine: '/var/tmp/strelka/runWorkflow.py -m local -j 8'
[2026-06-05T03:28:39.118199Z] [nf-0ae7f81ff1b5bec98d9608756d4a12ae-4ad67-rxjms] [758_1] [WorkflowRunner] [RunParameters] mode: local
[2026-06-05T03:28:39.118212Z] [nf-0ae7f81ff1b5bec98d9608756d4a12ae-4ad67-rxjms] [758_1] [WorkflowRunner] [RunParameters] nCores: 8
[2026-06-05T03:28:39.118219Z] [nf-0ae7f81ff1b5bec98d9608756d4a12ae-4ad67-rxjms] [758_1] [WorkflowRunner] [RunParameters] memMb: 1523801
[2026-06-05T03:28:39.118226Z] [nf-0ae7f81ff1b5bec98d9608756d4a12ae-4ad67-rxjms] [758_1] [WorkflowRunner] [RunParameters] dataDir: /var/tmp/strelka/workspace/pyflow.data
[2026-06-05T03:28:39.118233Z] [nf-0ae7f81ff1b5bec98d9608756d4a12ae-4ad67-rxjms] [758_1] [WorkflowRunner] [RunParameters] isDryRun: False
[2026-06-05T03:28:39.118241Z] [nf-0ae7f81ff1b5bec98d9608756d4a12ae-4ad67-rxjms] [758_1] [WorkflowRunner] [RunParameters] isContinue: False
[2026-06-05T03:28:39.118251Z] [nf-0ae7f81ff1b5bec98d9608756d4a12ae-4ad67-rxjms] [758_1] [WorkflowRunner] [RunParameters] isForceContinue: True
[2026-06-05T03:28:39.118259Z] [nf-0ae7f81ff1b5bec98d9608756d4a12ae-4ad67-rxjms] [758_1] [WorkflowRunner] [RunParameters] mailTo: ''
[2026-06-05T03:28:39.118639Z] [nf-0ae7f81ff1b5bec98d9608756d4a12ae-4ad67-rxjms] [758_1] [TaskRunner:masterWorkflow] Starting task specification for master workflow
[2026-06-05T03:28:39.118751Z] [nf-0ae7f81ff1b5bec98d9608756d4a12ae-4ad67-rxjms] [758_1] [StrelkaSomaticWorkflow] Initiating Strelka somatic workflow version: 2.9.10
[2026-06-05T03:28:39.125891Z] [nf-0ae7f81ff1b5bec98d9608756d4a12ae-4ad67-rxjms] [758_1] [WorkflowRunner] Adding sub-workflow task 'CallGenome' to master workflow
[2026-06-05T03:28:39.126435Z] [nf-0ae7f81ff1b5bec98d9608756d4a12ae-4ad67-rxjms] [758_1] [TaskRunner:masterWorkflow] Finished task specification for master workflow
[2026-06-05T03:28:39.126615Z] [nf-0ae7f81ff1b5bec98d9608756d4a12ae-4ad67-rxjms] [758_1] [TaskManager] Launching sub-workflow task: 'CallGenome' from master workflow
[2026-06-05T03:28:39.126828Z] [nf-0ae7f81ff1b5bec98d9608756d4a12ae-4ad67-rxjms] [758_1] [TaskRunner:CallGenome] Starting task specification for sub-workflow
[2026-06-05T03:28:39.127055Z] [nf-0ae7f81ff1b5bec98d9608756d4a12ae-4ad67-rxjms] [758_1] [WorkflowRunner] Adding command task 'CallGenome+makeTmpDir' to sub-workflow 'CallGenome'
[2026-06-05T03:28:39.127801Z] [nf-0ae7f81ff1b5bec98d9608756d4a12ae-4ad67-rxjms] [758_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_008_chr9_0000' to sub-workflow 'CallGenome'
[2026-06-05T03:28:39.127911Z] [nf-0ae7f81ff1b5bec98d9608756d4a12ae-4ad67-rxjms] [758_1] [WorkflowRunner] Adding command task 'CallGenome+fixVcfHeader_chromId_008_chr9_0000' to sub-workflow 'CallGenome'
[2026-06-05T03:28:39.128013Z] [nf-0ae7f81ff1b5bec98d9608756d4a12ae-4ad67-rxjms] [758_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_008_chr9_0000' to sub-workflow 'CallGenome'
[2026-06-05T03:28:39.128436Z] [nf-0ae7f81ff1b5bec98d9608756d4a12ae-4ad67-rxjms] [758_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_008_chr9_0001' to sub-workflow 'CallGenome'
[2026-06-05T03:28:39.128595Z] [nf-0ae7f81ff1b5bec98d9608756d4a12ae-4ad67-rxjms] [758_1] [TaskManager] Launching command task: 'CallGenome+makeTmpDir' from sub-workflow 'CallGenome'
[2026-06-05T03:28:39.128680Z] [nf-0ae7f81ff1b5bec98d9608756d4a12ae-4ad67-rxjms] [758_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_008_chr9_0001' to sub-workflow 'CallGenome'
[2026-06-05T03:28:39.129299Z] [nf-0ae7f81ff1b5bec98d9608756d4a12ae-4ad67-rxjms] [758_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_008_chr9_0002' to sub-workflow 'CallGenome'
[2026-06-05T03:28:39.129455Z] [nf-0ae7f81ff1b5bec98d9608756d4a12ae-4ad67-rxjms] [758_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_008_chr9_0002' to sub-workflow 'CallGenome'
[2026-06-05T03:28:39.129699Z] [nf-0ae7f81ff1b5bec98d9608756d4a12ae-4ad67-rxjms] [758_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_008_chr9_0003' to sub-workflow 'CallGenome'
[2026-06-05T03:28:39.129824Z] [nf-0ae7f81ff1b5bec98d9608756d4a12ae-4ad67-rxjms] [758_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_008_chr9_0003' to sub-workflow 'CallGenome'
[2026-06-05T03:28:39.131226Z] [nf-0ae7f81ff1b5bec98d9608756d4a12ae-4ad67-rxjms] [758_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_008_chr9_0004' to sub-workflow 'CallGenome'
[2026-06-05T03:28:39.131734Z] [nf-0ae7f81ff1b5bec98d9608756d4a12ae-4ad67-rxjms] [758_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_008_chr9_0004' to sub-workflow 'CallGenome'
[2026-06-05T03:28:39.131958Z] [nf-0ae7f81ff1b5bec98d9608756d4a12ae-4ad67-rxjms] [758_1] [TaskRunner:CallGenome+makeTmpDir] Task initiated on local node
[2026-06-05T03:28:39.132262Z] [nf-0ae7f81ff1b5bec98d9608756d4a12ae-4ad67-rxjms] [758_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_008_chr9_0005' to sub-workflow 'CallGenome'
[2026-06-05T03:28:39.132349Z] [nf-0ae7f81ff1b5bec98d9608756d4a12ae-4ad67-rxjms] [758_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_008_chr9_0005' to sub-workflow 'CallGenome'
[2026-06-05T03:28:39.132491Z] [nf-0ae7f81ff1b5bec98d9608756d4a12ae-4ad67-rxjms] [758_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_008_chr9_0006' to sub-workflow 'CallGenome'
[2026-06-05T03:28:39.132570Z] [nf-0ae7f81ff1b5bec98d9608756d4a12ae-4ad67-rxjms] [758_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_008_chr9_0006' to sub-workflow 'CallGenome'
[2026-06-05T03:28:39.132708Z] [nf-0ae7f81ff1b5bec98d9608756d4a12ae-4ad67-rxjms] [758_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_008_chr9_0007' to sub-workflow 'CallGenome'
[2026-06-05T03:28:39.132788Z] [nf-0ae7f81ff1b5bec98d9608756d4a12ae-4ad67-rxjms] [758_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_008_chr9_0007' to sub-workflow 'CallGenome'
[2026-06-05T03:28:39.133004Z] [nf-0ae7f81ff1b5bec98d9608756d4a12ae-4ad67-rxjms] [758_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_008_chr9_0008' to sub-workflow 'CallGenome'
[2026-06-05T03:28:39.133104Z] [nf-0ae7f81ff1b5bec98d9608756d4a12ae-4ad67-rxjms] [758_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_008_chr9_0008' to sub-workflow 'CallGenome'
[2026-06-05T03:28:39.133339Z] [nf-0ae7f81ff1b5bec98d9608756d4a12ae-4ad67-rxjms] [758_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_008_chr9_0009' to sub-workflow 'CallGenome'
[2026-06-05T03:28:39.133727Z] [nf-0ae7f81ff1b5bec98d9608756d4a12ae-4ad67-rxjms] [758_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_008_chr9_0009' to sub-workflow 'CallGenome'
[2026-06-05T03:28:39.133878Z] [nf-0ae7f81ff1b5bec98d9608756d4a12ae-4ad67-rxjms] [758_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_008_chr9_0010' to sub-workflow 'CallGenome'
[2026-06-05T03:28:39.133958Z] [nf-0ae7f81ff1b5bec98d9608756d4a12ae-4ad67-rxjms] [758_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_008_chr9_0010' to sub-workflow 'CallGenome'
[2026-06-05T03:28:39.134512Z] [nf-0ae7f81ff1b5bec98d9608756d4a12ae-4ad67-rxjms] [758_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_008_chr9_0011' to sub-workflow 'CallGenome'
[2026-06-05T03:28:39.134596Z] [nf-0ae7f81ff1b5bec98d9608756d4a12ae-4ad67-rxjms] [758_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_008_chr9_0011' to sub-workflow 'CallGenome'
[2026-06-05T03:28:39.134735Z] [nf-0ae7f81ff1b5bec98d9608756d4a12ae-4ad67-rxjms] [758_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_022_chrX_0000' to sub-workflow 'CallGenome'
[2026-06-05T03:28:39.134953Z] [nf-0ae7f81ff1b5bec98d9608756d4a12ae-4ad67-rxjms] [758_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_022_chrX_0000' to sub-workflow 'CallGenome'
[2026-06-05T03:28:39.135341Z] [nf-0ae7f81ff1b5bec98d9608756d4a12ae-4ad67-rxjms] [758_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_022_chrX_0001' to sub-workflow 'CallGenome'
[2026-06-05T03:28:39.135600Z] [nf-0ae7f81ff1b5bec98d9608756d4a12ae-4ad67-rxjms] [758_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_022_chrX_0001' to sub-workflow 'CallGenome'
[2026-06-05T03:28:39.135752Z] [nf-0ae7f81ff1b5bec98d9608756d4a12ae-4ad67-rxjms] [758_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_022_chrX_0002' to sub-workflow 'CallGenome'
[2026-06-05T03:28:39.135836Z] [nf-0ae7f81ff1b5bec98d9608756d4a12ae-4ad67-rxjms] [758_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_022_chrX_0002' to sub-workflow 'CallGenome'
[2026-06-05T03:28:39.135977Z] [nf-0ae7f81ff1b5bec98d9608756d4a12ae-4ad67-rxjms] [758_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_022_chrX_0003' to sub-workflow 'CallGenome'
[2026-06-05T03:28:39.136058Z] [nf-0ae7f81ff1b5bec98d9608756d4a12ae-4ad67-rxjms] [758_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_022_chrX_0003' to sub-workflow 'CallGenome'
[2026-06-05T03:28:39.136195Z] [nf-0ae7f81ff1b5bec98d9608756d4a12ae-4ad67-rxjms] [758_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_022_chrX_0004' to sub-workflow 'CallGenome'
[2026-06-05T03:28:39.136278Z] [nf-0ae7f81ff1b5bec98d9608756d4a12ae-4ad67-rxjms] [758_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_022_chrX_0004' to sub-workflow 'CallGenome'
[2026-06-05T03:28:39.136421Z] [nf-0ae7f81ff1b5bec98d9608756d4a12ae-4ad67-rxjms] [758_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_022_chrX_0005' to sub-workflow 'CallGenome'
[2026-06-05T03:28:39.136497Z] [nf-0ae7f81ff1b5bec98d9608756d4a12ae-4ad67-rxjms] [758_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_022_chrX_0005' to sub-workflow 'CallGenome'
[2026-06-05T03:28:39.136834Z] [nf-0ae7f81ff1b5bec98d9608756d4a12ae-4ad67-rxjms] [758_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_022_chrX_0006' to sub-workflow 'CallGenome'
[2026-06-05T03:28:39.137197Z] [nf-0ae7f81ff1b5bec98d9608756d4a12ae-4ad67-rxjms] [758_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_022_chrX_0006' to sub-workflow 'CallGenome'
[2026-06-05T03:28:39.137338Z] [nf-0ae7f81ff1b5bec98d9608756d4a12ae-4ad67-rxjms] [758_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_022_chrX_0007' to sub-workflow 'CallGenome'
[2026-06-05T03:28:39.137419Z] [nf-0ae7f81ff1b5bec98d9608756d4a12ae-4ad67-rxjms] [758_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_022_chrX_0007' to sub-workflow 'CallGenome'
[2026-06-05T03:28:39.137550Z] [nf-0ae7f81ff1b5bec98d9608756d4a12ae-4ad67-rxjms] [758_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_022_chrX_0008' to sub-workflow 'CallGenome'
[2026-06-05T03:28:39.137632Z] [nf-0ae7f81ff1b5bec98d9608756d4a12ae-4ad67-rxjms] [758_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_022_chrX_0008' to sub-workflow 'CallGenome'
[2026-06-05T03:28:39.137789Z] [nf-0ae7f81ff1b5bec98d9608756d4a12ae-4ad67-rxjms] [758_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_022_chrX_0009' to sub-workflow 'CallGenome'
[2026-06-05T03:28:39.137866Z] [nf-0ae7f81ff1b5bec98d9608756d4a12ae-4ad67-rxjms] [758_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_022_chrX_0009' to sub-workflow 'CallGenome'
[2026-06-05T03:28:39.138070Z] [nf-0ae7f81ff1b5bec98d9608756d4a12ae-4ad67-rxjms] [758_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_022_chrX_0010' to sub-workflow 'CallGenome'
[2026-06-05T03:28:39.138150Z] [nf-0ae7f81ff1b5bec98d9608756d4a12ae-4ad67-rxjms] [758_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_022_chrX_0010' to sub-workflow 'CallGenome'
[2026-06-05T03:28:39.138456Z] [nf-0ae7f81ff1b5bec98d9608756d4a12ae-4ad67-rxjms] [758_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_022_chrX_0011' to sub-workflow 'CallGenome'
[2026-06-05T03:28:39.138925Z] [nf-0ae7f81ff1b5bec98d9608756d4a12ae-4ad67-rxjms] [758_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_022_chrX_0011' to sub-workflow 'CallGenome'
[2026-06-05T03:28:39.139061Z] [nf-0ae7f81ff1b5bec98d9608756d4a12ae-4ad67-rxjms] [758_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_022_chrX_0012' to sub-workflow 'CallGenome'
[2026-06-05T03:28:39.139136Z] [nf-0ae7f81ff1b5bec98d9608756d4a12ae-4ad67-rxjms] [758_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_022_chrX_0012' to sub-workflow 'CallGenome'
[2026-06-05T03:28:39.139302Z] [nf-0ae7f81ff1b5bec98d9608756d4a12ae-4ad67-rxjms] [758_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_022_chrX_0013' to sub-workflow 'CallGenome'
[2026-06-05T03:28:39.139388Z] [nf-0ae7f81ff1b5bec98d9608756d4a12ae-4ad67-rxjms] [758_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_022_chrX_0013' to sub-workflow 'CallGenome'
[2026-06-05T03:28:39.139524Z] [nf-0ae7f81ff1b5bec98d9608756d4a12ae-4ad67-rxjms] [758_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_023_chrY_0000' to sub-workflow 'CallGenome'
[2026-06-05T03:28:39.139605Z] [nf-0ae7f81ff1b5bec98d9608756d4a12ae-4ad67-rxjms] [758_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_023_chrY_0000' to sub-workflow 'CallGenome'
[2026-06-05T03:28:39.139741Z] [nf-0ae7f81ff1b5bec98d9608756d4a12ae-4ad67-rxjms] [758_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_023_chrY_0001' to sub-workflow 'CallGenome'
[2026-06-05T03:28:39.139822Z] [nf-0ae7f81ff1b5bec98d9608756d4a12ae-4ad67-rxjms] [758_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_023_chrY_0001' to sub-workflow 'CallGenome'
[2026-06-05T03:28:39.140004Z] [nf-0ae7f81ff1b5bec98d9608756d4a12ae-4ad67-rxjms] [758_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_023_chrY_0002' to sub-workflow 'CallGenome'
[2026-06-05T03:28:39.140573Z] [nf-0ae7f81ff1b5bec98d9608756d4a12ae-4ad67-rxjms] [758_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_023_chrY_0002' to sub-workflow 'CallGenome'
[2026-06-05T03:28:39.140716Z] [nf-0ae7f81ff1b5bec98d9608756d4a12ae-4ad67-rxjms] [758_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_023_chrY_0003' to sub-workflow 'CallGenome'
[2026-06-05T03:28:39.140797Z] [nf-0ae7f81ff1b5bec98d9608756d4a12ae-4ad67-rxjms] [758_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_023_chrY_0003' to sub-workflow 'CallGenome'
[2026-06-05T03:28:39.157137Z] [nf-0ae7f81ff1b5bec98d9608756d4a12ae-4ad67-rxjms] [758_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_023_chrY_0004' to sub-workflow 'CallGenome'
[2026-06-05T03:28:39.157631Z] [nf-0ae7f81ff1b5bec98d9608756d4a12ae-4ad67-rxjms] [758_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_023_chrY_0004' to sub-workflow 'CallGenome'
[2026-06-05T03:28:39.157772Z] [nf-0ae7f81ff1b5bec98d9608756d4a12ae-4ad67-rxjms] [758_1] [WorkflowRunner] Adding command task 'CallGenome+completedAllGenomeSegments' to sub-workflow 'CallGenome'
[2026-06-05T03:28:39.158070Z] [nf-0ae7f81ff1b5bec98d9608756d4a12ae-4ad67-rxjms] [758_1] [WorkflowRunner] Adding command task 'CallGenome+SNV_concat_vcf' to sub-workflow 'CallGenome'
[2026-06-05T03:28:39.158236Z] [nf-0ae7f81ff1b5bec98d9608756d4a12ae-4ad67-rxjms] [758_1] [WorkflowRunner] Adding command task 'CallGenome+SNV_index_vcf' to sub-workflow 'CallGenome'
[2026-06-05T03:28:39.158343Z] [nf-0ae7f81ff1b5bec98d9608756d4a12ae-4ad67-rxjms] [758_1] [WorkflowRunner] Adding command task 'CallGenome+Indel_concat_vcf' to sub-workflow 'CallGenome'
[2026-06-05T03:28:39.158427Z] [nf-0ae7f81ff1b5bec98d9608756d4a12ae-4ad67-rxjms] [758_1] [WorkflowRunner] Adding command task 'CallGenome+Indel_index_vcf' to sub-workflow 'CallGenome'
[2026-06-05T03:28:39.158560Z] [nf-0ae7f81ff1b5bec98d9608756d4a12ae-4ad67-rxjms] [758_1] [WorkflowRunner] Adding command task 'CallGenome+mergeRunStats' to sub-workflow 'CallGenome'
[2026-06-05T03:28:39.158663Z] [nf-0ae7f81ff1b5bec98d9608756d4a12ae-4ad67-rxjms] [758_1] [WorkflowRunner] Adding command task 'CallGenome+removeTmpDir' to sub-workflow 'CallGenome'
[2026-06-05T03:28:39.158788Z] [nf-0ae7f81ff1b5bec98d9608756d4a12ae-4ad67-rxjms] [758_1] [TaskRunner:CallGenome] Finished task specification for sub-workflow
[2026-06-05T03:28:39.158909Z] [nf-0ae7f81ff1b5bec98d9608756d4a12ae-4ad67-rxjms] [758_1] [TaskManager] Completed command task: 'CallGenome+makeTmpDir' launched from sub-workflow 'CallGenome'
[2026-06-05T03:28:39.159754Z] [nf-0ae7f81ff1b5bec98d9608756d4a12ae-4ad67-rxjms] [758_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0012' from sub-workflow 'CallGenome'
[2026-06-05T03:28:39.161247Z] [nf-0ae7f81ff1b5bec98d9608756d4a12ae-4ad67-rxjms] [758_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0001' from sub-workflow 'CallGenome'
[2026-06-05T03:28:39.161740Z] [nf-0ae7f81ff1b5bec98d9608756d4a12ae-4ad67-rxjms] [758_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0001' from sub-workflow 'CallGenome'
[2026-06-05T03:28:39.162243Z] [nf-0ae7f81ff1b5bec98d9608756d4a12ae-4ad67-rxjms] [758_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0011' from sub-workflow 'CallGenome'
[2026-06-05T03:28:39.162697Z] [nf-0ae7f81ff1b5bec98d9608756d4a12ae-4ad67-rxjms] [758_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0004' from sub-workflow 'CallGenome'
[2026-06-05T03:28:39.163218Z] [nf-0ae7f81ff1b5bec98d9608756d4a12ae-4ad67-rxjms] [758_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0006' from sub-workflow 'CallGenome'
[2026-06-05T03:28:39.164139Z] [nf-0ae7f81ff1b5bec98d9608756d4a12ae-4ad67-rxjms] [758_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_023_chrY_0001' from sub-workflow 'CallGenome'
[2026-06-05T03:28:39.164786Z] [nf-0ae7f81ff1b5bec98d9608756d4a12ae-4ad67-rxjms] [758_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0008' from sub-workflow 'CallGenome'
[2026-06-05T03:28:39.169378Z] [nf-0ae7f81ff1b5bec98d9608756d4a12ae-4ad67-rxjms] [758_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_022_chrX_0012] Task initiated on local node
[2026-06-05T03:28:39.173572Z] [nf-0ae7f81ff1b5bec98d9608756d4a12ae-4ad67-rxjms] [758_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_008_chr9_0001] Task initiated on local node
[2026-06-05T03:28:39.179142Z] [nf-0ae7f81ff1b5bec98d9608756d4a12ae-4ad67-rxjms] [758_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_022_chrX_0004] Task initiated on local node
[2026-06-05T03:28:39.179765Z] [nf-0ae7f81ff1b5bec98d9608756d4a12ae-4ad67-rxjms] [758_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_008_chr9_0006] Task initiated on local node
[2026-06-05T03:28:39.180764Z] [nf-0ae7f81ff1b5bec98d9608756d4a12ae-4ad67-rxjms] [758_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_008_chr9_0011] Task initiated on local node
[2026-06-05T03:28:39.181175Z] [nf-0ae7f81ff1b5bec98d9608756d4a12ae-4ad67-rxjms] [758_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_023_chrY_0001] Task initiated on local node
[2026-06-05T03:28:39.182053Z] [nf-0ae7f81ff1b5bec98d9608756d4a12ae-4ad67-rxjms] [758_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_008_chr9_0008] Task initiated on local node
[2026-06-05T03:28:39.279279Z] [nf-0ae7f81ff1b5bec98d9608756d4a12ae-4ad67-rxjms] [758_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0001' launched from sub-workflow 'CallGenome'
[2026-06-05T03:28:39.279331Z] [nf-0ae7f81ff1b5bec98d9608756d4a12ae-4ad67-rxjms] [758_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0008' launched from sub-workflow 'CallGenome'
[2026-06-05T03:28:39.279355Z] [nf-0ae7f81ff1b5bec98d9608756d4a12ae-4ad67-rxjms] [758_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0006' launched from sub-workflow 'CallGenome'
[2026-06-05T03:28:39.280071Z] [nf-0ae7f81ff1b5bec98d9608756d4a12ae-4ad67-rxjms] [758_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0003' from sub-workflow 'CallGenome'
[2026-06-05T03:28:39.280256Z] [nf-0ae7f81ff1b5bec98d9608756d4a12ae-4ad67-rxjms] [758_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_023_chrY_0000' from sub-workflow 'CallGenome'
[2026-06-05T03:28:39.280516Z] [nf-0ae7f81ff1b5bec98d9608756d4a12ae-4ad67-rxjms] [758_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0009' from sub-workflow 'CallGenome'
[2026-06-05T03:28:39.285883Z] [nf-0ae7f81ff1b5bec98d9608756d4a12ae-4ad67-rxjms] [758_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_023_chrY_0000] Task initiated on local node
[2026-06-05T03:28:39.286437Z] [nf-0ae7f81ff1b5bec98d9608756d4a12ae-4ad67-rxjms] [758_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_022_chrX_0003] Task initiated on local node
[2026-06-05T03:28:39.745368Z] [nf-0ae7f81ff1b5bec98d9608756d4a12ae-4ad67-rxjms] [758_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_023_chrY_0001' launched from sub-workflow 'CallGenome'
[2026-06-05T03:28:39.746239Z] [nf-0ae7f81ff1b5bec98d9608756d4a12ae-4ad67-rxjms] [758_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_023_chrY_0001' from sub-workflow 'CallGenome'
[2026-06-05T03:28:39.749738Z] [nf-0ae7f81ff1b5bec98d9608756d4a12ae-4ad67-rxjms] [758_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_023_chrY_0001] Task initiated on local node
[2026-06-05T03:28:39.810408Z] [nf-0ae7f81ff1b5bec98d9608756d4a12ae-4ad67-rxjms] [758_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_023_chrY_0001' launched from sub-workflow 'CallGenome'
[2026-06-05T03:28:39.811208Z] [nf-0ae7f81ff1b5bec98d9608756d4a12ae-4ad67-rxjms] [758_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0002' from sub-workflow 'CallGenome'
[2026-06-05T03:28:39.814505Z] [nf-0ae7f81ff1b5bec98d9608756d4a12ae-4ad67-rxjms] [758_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_022_chrX_0002] Task initiated on local node
[2026-06-05T03:28:39.875508Z] [nf-0ae7f81ff1b5bec98d9608756d4a12ae-4ad67-rxjms] [758_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_023_chrY_0000' launched from sub-workflow 'CallGenome'
[2026-06-05T03:28:39.876377Z] [nf-0ae7f81ff1b5bec98d9608756d4a12ae-4ad67-rxjms] [758_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0006' from sub-workflow 'CallGenome'
[2026-06-05T03:28:39.879478Z] [nf-0ae7f81ff1b5bec98d9608756d4a12ae-4ad67-rxjms] [758_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_008_chr9_0006] Task initiated on local node
[2026-06-05T03:28:39.940508Z] [nf-0ae7f81ff1b5bec98d9608756d4a12ae-4ad67-rxjms] [758_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0006' launched from sub-workflow 'CallGenome'
[2026-06-05T03:28:39.941398Z] [nf-0ae7f81ff1b5bec98d9608756d4a12ae-4ad67-rxjms] [758_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0002' from sub-workflow 'CallGenome'
[2026-06-05T03:28:39.944630Z] [nf-0ae7f81ff1b5bec98d9608756d4a12ae-4ad67-rxjms] [758_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_008_chr9_0002] Task initiated on local node
[2026-06-05T03:28:40.005648Z] [nf-0ae7f81ff1b5bec98d9608756d4a12ae-4ad67-rxjms] [758_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0002' launched from sub-workflow 'CallGenome'
[2026-06-05T03:28:40.006509Z] [nf-0ae7f81ff1b5bec98d9608756d4a12ae-4ad67-rxjms] [758_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0003' from sub-workflow 'CallGenome'
[2026-06-05T03:28:40.009664Z] [nf-0ae7f81ff1b5bec98d9608756d4a12ae-4ad67-rxjms] [758_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_008_chr9_0003] Task initiated on local node
[2026-06-05T03:28:40.070683Z] [nf-0ae7f81ff1b5bec98d9608756d4a12ae-4ad67-rxjms] [758_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0003' launched from sub-workflow 'CallGenome'
[2026-06-05T03:28:40.071445Z] [nf-0ae7f81ff1b5bec98d9608756d4a12ae-4ad67-rxjms] [758_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0009' from sub-workflow 'CallGenome'
[2026-06-05T03:28:40.074390Z] [nf-0ae7f81ff1b5bec98d9608756d4a12ae-4ad67-rxjms] [758_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_008_chr9_0009] Task initiated on local node
[2026-06-05T03:28:40.335993Z] [nf-0ae7f81ff1b5bec98d9608756d4a12ae-4ad67-rxjms] [758_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0012' launched from sub-workflow 'CallGenome'
[2026-06-05T03:28:40.336773Z] [nf-0ae7f81ff1b5bec98d9608756d4a12ae-4ad67-rxjms] [758_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0012' from sub-workflow 'CallGenome'
[2026-06-05T03:28:40.340087Z] [nf-0ae7f81ff1b5bec98d9608756d4a12ae-4ad67-rxjms] [758_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_022_chrX_0012] Task initiated on local node
[2026-06-05T03:28:40.400923Z] [nf-0ae7f81ff1b5bec98d9608756d4a12ae-4ad67-rxjms] [758_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0012' launched from sub-workflow 'CallGenome'
[2026-06-05T03:28:40.401694Z] [nf-0ae7f81ff1b5bec98d9608756d4a12ae-4ad67-rxjms] [758_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0000' from sub-workflow 'CallGenome'
[2026-06-05T03:28:40.405047Z] [nf-0ae7f81ff1b5bec98d9608756d4a12ae-4ad67-rxjms] [758_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_022_chrX_0000] Task initiated on local node
[2026-06-05T03:28:40.698233Z] [nf-0ae7f81ff1b5bec98d9608756d4a12ae-4ad67-rxjms] [758_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_022_chrX_0009] Task initiated on local node
[2026-06-05T03:28:40.716647Z] [nf-0ae7f81ff1b5bec98d9608756d4a12ae-4ad67-rxjms] [758_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0003' launched from sub-workflow 'CallGenome'
[2026-06-05T03:28:40.717948Z] [nf-0ae7f81ff1b5bec98d9608756d4a12ae-4ad67-rxjms] [758_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_023_chrY_0004' from sub-workflow 'CallGenome'
[2026-06-05T03:28:40.721070Z] [nf-0ae7f81ff1b5bec98d9608756d4a12ae-4ad67-rxjms] [758_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_023_chrY_0004] Task initiated on local node
[2026-06-05T03:28:40.882652Z] [nf-0ae7f81ff1b5bec98d9608756d4a12ae-4ad67-rxjms] [758_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_023_chrY_0004' launched from sub-workflow 'CallGenome'
[2026-06-05T03:28:40.884017Z] [nf-0ae7f81ff1b5bec98d9608756d4a12ae-4ad67-rxjms] [758_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_023_chrY_0004' from sub-workflow 'CallGenome'
[2026-06-05T03:28:40.887067Z] [nf-0ae7f81ff1b5bec98d9608756d4a12ae-4ad67-rxjms] [758_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_023_chrY_0004] Task initiated on local node
[2026-06-05T03:28:40.948297Z] [nf-0ae7f81ff1b5bec98d9608756d4a12ae-4ad67-rxjms] [758_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_023_chrY_0004' launched from sub-workflow 'CallGenome'
[2026-06-05T03:28:40.949819Z] [nf-0ae7f81ff1b5bec98d9608756d4a12ae-4ad67-rxjms] [758_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0011' from sub-workflow 'CallGenome'
[2026-06-05T03:28:40.953552Z] [nf-0ae7f81ff1b5bec98d9608756d4a12ae-4ad67-rxjms] [758_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_022_chrX_0011] Task initiated on local node
[2026-06-05T03:28:41.164620Z] [nf-0ae7f81ff1b5bec98d9608756d4a12ae-4ad67-rxjms] [758_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0002' launched from sub-workflow 'CallGenome'
[2026-06-05T03:28:41.165803Z] [nf-0ae7f81ff1b5bec98d9608756d4a12ae-4ad67-rxjms] [758_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0002' from sub-workflow 'CallGenome'
[2026-06-05T03:28:41.168811Z] [nf-0ae7f81ff1b5bec98d9608756d4a12ae-4ad67-rxjms] [758_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_022_chrX_0002] Task initiated on local node
[2026-06-05T03:28:41.229985Z] [nf-0ae7f81ff1b5bec98d9608756d4a12ae-4ad67-rxjms] [758_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0002' launched from sub-workflow 'CallGenome'
[2026-06-05T03:28:41.230104Z] [nf-0ae7f81ff1b5bec98d9608756d4a12ae-4ad67-rxjms] [758_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0004' launched from sub-workflow 'CallGenome'
[2026-06-05T03:28:41.231210Z] [nf-0ae7f81ff1b5bec98d9608756d4a12ae-4ad67-rxjms] [758_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0002' from sub-workflow 'CallGenome'
[2026-06-05T03:28:41.231701Z] [nf-0ae7f81ff1b5bec98d9608756d4a12ae-4ad67-rxjms] [758_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0005' from sub-workflow 'CallGenome'
[2026-06-05T03:28:41.235283Z] [nf-0ae7f81ff1b5bec98d9608756d4a12ae-4ad67-rxjms] [758_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_008_chr9_0002] Task initiated on local node
[2026-06-05T03:28:41.236522Z] [nf-0ae7f81ff1b5bec98d9608756d4a12ae-4ad67-rxjms] [758_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_022_chrX_0005] Task initiated on local node
[2026-06-05T03:28:41.296480Z] [nf-0ae7f81ff1b5bec98d9608756d4a12ae-4ad67-rxjms] [758_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0002' launched from sub-workflow 'CallGenome'
[2026-06-05T03:28:41.297570Z] [nf-0ae7f81ff1b5bec98d9608756d4a12ae-4ad67-rxjms] [758_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0010' from sub-workflow 'CallGenome'
[2026-06-05T03:28:41.301003Z] [nf-0ae7f81ff1b5bec98d9608756d4a12ae-4ad67-rxjms] [758_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_022_chrX_0010] Task initiated on local node
[2026-06-05T03:28:41.305705Z] [nf-0ae7f81ff1b5bec98d9608756d4a12ae-4ad67-rxjms] [758_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0009' launched from sub-workflow 'CallGenome'
[2026-06-05T03:28:41.306792Z] [nf-0ae7f81ff1b5bec98d9608756d4a12ae-4ad67-rxjms] [758_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0009' from sub-workflow 'CallGenome'
[2026-06-05T03:28:41.309458Z] [nf-0ae7f81ff1b5bec98d9608756d4a12ae-4ad67-rxjms] [758_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_022_chrX_0009] Task initiated on local node
[2026-06-05T03:28:41.370921Z] [nf-0ae7f81ff1b5bec98d9608756d4a12ae-4ad67-rxjms] [758_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0009' launched from sub-workflow 'CallGenome'
[2026-06-05T03:28:41.372465Z] [nf-0ae7f81ff1b5bec98d9608756d4a12ae-4ad67-rxjms] [758_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0007' from sub-workflow 'CallGenome'
[2026-06-05T03:28:41.372990Z] [nf-0ae7f81ff1b5bec98d9608756d4a12ae-4ad67-rxjms] [758_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0009' launched from sub-workflow 'CallGenome'
[2026-06-05T03:28:41.376297Z] [nf-0ae7f81ff1b5bec98d9608756d4a12ae-4ad67-rxjms] [758_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0009' from sub-workflow 'CallGenome'
[2026-06-05T03:28:41.378509Z] [nf-0ae7f81ff1b5bec98d9608756d4a12ae-4ad67-rxjms] [758_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_008_chr9_0007] Task initiated on local node
[2026-06-05T03:28:41.379471Z] [nf-0ae7f81ff1b5bec98d9608756d4a12ae-4ad67-rxjms] [758_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_008_chr9_0009] Task initiated on local node
[2026-06-05T03:28:41.441275Z] [nf-0ae7f81ff1b5bec98d9608756d4a12ae-4ad67-rxjms] [758_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0007' launched from sub-workflow 'CallGenome'
[2026-06-05T03:28:41.441422Z] [nf-0ae7f81ff1b5bec98d9608756d4a12ae-4ad67-rxjms] [758_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0009' launched from sub-workflow 'CallGenome'
[2026-06-05T03:28:41.442536Z] [nf-0ae7f81ff1b5bec98d9608756d4a12ae-4ad67-rxjms] [758_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0003' from sub-workflow 'CallGenome'
[2026-06-05T03:28:41.442926Z] [nf-0ae7f81ff1b5bec98d9608756d4a12ae-4ad67-rxjms] [758_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0013' from sub-workflow 'CallGenome'
[2026-06-05T03:28:41.446390Z] [nf-0ae7f81ff1b5bec98d9608756d4a12ae-4ad67-rxjms] [758_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_008_chr9_0003] Task initiated on local node
[2026-06-05T03:28:41.447822Z] [nf-0ae7f81ff1b5bec98d9608756d4a12ae-4ad67-rxjms] [758_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_022_chrX_0013] Task initiated on local node
[2026-06-05T03:28:41.507424Z] [nf-0ae7f81ff1b5bec98d9608756d4a12ae-4ad67-rxjms] [758_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0003' launched from sub-workflow 'CallGenome'
[2026-06-05T03:28:41.508609Z] [nf-0ae7f81ff1b5bec98d9608756d4a12ae-4ad67-rxjms] [758_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0007' from sub-workflow 'CallGenome'
[2026-06-05T03:28:41.512006Z] [nf-0ae7f81ff1b5bec98d9608756d4a12ae-4ad67-rxjms] [758_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_008_chr9_0007] Task initiated on local node
[2026-06-05T03:28:41.572979Z] [nf-0ae7f81ff1b5bec98d9608756d4a12ae-4ad67-rxjms] [758_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0007' launched from sub-workflow 'CallGenome'
[2026-06-05T03:28:41.574125Z] [nf-0ae7f81ff1b5bec98d9608756d4a12ae-4ad67-rxjms] [758_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0000' from sub-workflow 'CallGenome'
[2026-06-05T03:28:41.577578Z] [nf-0ae7f81ff1b5bec98d9608756d4a12ae-4ad67-rxjms] [758_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_008_chr9_0000] Task initiated on local node
[2026-06-05T03:28:41.688974Z] [nf-0ae7f81ff1b5bec98d9608756d4a12ae-4ad67-rxjms] [758_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0000' launched from sub-workflow 'CallGenome'
[2026-06-05T03:28:41.690158Z] [nf-0ae7f81ff1b5bec98d9608756d4a12ae-4ad67-rxjms] [758_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0005' from sub-workflow 'CallGenome'
[2026-06-05T03:28:41.693647Z] [nf-0ae7f81ff1b5bec98d9608756d4a12ae-4ad67-rxjms] [758_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_008_chr9_0005] Task initiated on local node
[2026-06-05T03:28:41.754713Z] [nf-0ae7f81ff1b5bec98d9608756d4a12ae-4ad67-rxjms] [758_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0000' launched from sub-workflow 'CallGenome'
[2026-06-05T03:28:41.755513Z] [nf-0ae7f81ff1b5bec98d9608756d4a12ae-4ad67-rxjms] [758_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0000' from sub-workflow 'CallGenome'
[2026-06-05T03:28:41.758389Z] [nf-0ae7f81ff1b5bec98d9608756d4a12ae-4ad67-rxjms] [758_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_022_chrX_0000] Task initiated on local node
[2026-06-05T03:28:41.771191Z] [nf-0ae7f81ff1b5bec98d9608756d4a12ae-4ad67-rxjms] [758_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0005' launched from sub-workflow 'CallGenome'
[2026-06-05T03:28:41.771801Z] [nf-0ae7f81ff1b5bec98d9608756d4a12ae-4ad67-rxjms] [758_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0005' from sub-workflow 'CallGenome'
[2026-06-05T03:28:41.775583Z] [nf-0ae7f81ff1b5bec98d9608756d4a12ae-4ad67-rxjms] [758_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_008_chr9_0005] Task initiated on local node
[2026-06-05T03:28:41.803691Z] [nf-0ae7f81ff1b5bec98d9608756d4a12ae-4ad67-rxjms] [758_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0000' launched from sub-workflow 'CallGenome'
[2026-06-05T03:28:41.804817Z] [nf-0ae7f81ff1b5bec98d9608756d4a12ae-4ad67-rxjms] [758_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0003' from sub-workflow 'CallGenome'
[2026-06-05T03:28:41.805166Z] [nf-0ae7f81ff1b5bec98d9608756d4a12ae-4ad67-rxjms] [758_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0005' launched from sub-workflow 'CallGenome'
[2026-06-05T03:28:41.806237Z] [nf-0ae7f81ff1b5bec98d9608756d4a12ae-4ad67-rxjms] [758_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0006' from sub-workflow 'CallGenome'
[2026-06-05T03:28:41.809945Z] [nf-0ae7f81ff1b5bec98d9608756d4a12ae-4ad67-rxjms] [758_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_022_chrX_0003] Task initiated on local node
[2026-06-05T03:28:41.811185Z] [nf-0ae7f81ff1b5bec98d9608756d4a12ae-4ad67-rxjms] [758_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_022_chrX_0006] Task initiated on local node
[2026-06-05T03:28:41.840582Z] [nf-0ae7f81ff1b5bec98d9608756d4a12ae-4ad67-rxjms] [758_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0003' launched from sub-workflow 'CallGenome'
[2026-06-05T03:28:41.841310Z] [nf-0ae7f81ff1b5bec98d9608756d4a12ae-4ad67-rxjms] [758_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0004' from sub-workflow 'CallGenome'
[2026-06-05T03:28:41.844518Z] [nf-0ae7f81ff1b5bec98d9608756d4a12ae-4ad67-rxjms] [758_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_022_chrX_0004] Task initiated on local node
[2026-06-05T03:28:41.873332Z] [nf-0ae7f81ff1b5bec98d9608756d4a12ae-4ad67-rxjms] [758_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0005' launched from sub-workflow 'CallGenome'
[2026-06-05T03:28:41.874030Z] [nf-0ae7f81ff1b5bec98d9608756d4a12ae-4ad67-rxjms] [758_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0005' from sub-workflow 'CallGenome'
[2026-06-05T03:28:41.877023Z] [nf-0ae7f81ff1b5bec98d9608756d4a12ae-4ad67-rxjms] [758_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_022_chrX_0005] Task initiated on local node
[2026-06-05T03:28:41.877633Z] [nf-0ae7f81ff1b5bec98d9608756d4a12ae-4ad67-rxjms] [758_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0004' launched from sub-workflow 'CallGenome'
[2026-06-05T03:28:41.878303Z] [nf-0ae7f81ff1b5bec98d9608756d4a12ae-4ad67-rxjms] [758_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0008' from sub-workflow 'CallGenome'
[2026-06-05T03:28:41.881203Z] [nf-0ae7f81ff1b5bec98d9608756d4a12ae-4ad67-rxjms] [758_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_022_chrX_0008] Task initiated on local node
[2026-06-05T03:28:41.910119Z] [nf-0ae7f81ff1b5bec98d9608756d4a12ae-4ad67-rxjms] [758_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0005' launched from sub-workflow 'CallGenome'
[2026-06-05T03:28:41.910696Z] [nf-0ae7f81ff1b5bec98d9608756d4a12ae-4ad67-rxjms] [758_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0004' from sub-workflow 'CallGenome'
[2026-06-05T03:28:41.913969Z] [nf-0ae7f81ff1b5bec98d9608756d4a12ae-4ad67-rxjms] [758_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_008_chr9_0004] Task initiated on local node
[2026-06-05T03:28:42.024711Z] [nf-0ae7f81ff1b5bec98d9608756d4a12ae-4ad67-rxjms] [758_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0004' launched from sub-workflow 'CallGenome'
[2026-06-05T03:28:42.025412Z] [nf-0ae7f81ff1b5bec98d9608756d4a12ae-4ad67-rxjms] [758_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0004' from sub-workflow 'CallGenome'
[2026-06-05T03:28:42.028895Z] [nf-0ae7f81ff1b5bec98d9608756d4a12ae-4ad67-rxjms] [758_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_008_chr9_0004] Task initiated on local node
[2026-06-05T03:28:42.089626Z] [nf-0ae7f81ff1b5bec98d9608756d4a12ae-4ad67-rxjms] [758_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0004' launched from sub-workflow 'CallGenome'
[2026-06-05T03:28:42.090326Z] [nf-0ae7f81ff1b5bec98d9608756d4a12ae-4ad67-rxjms] [758_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_023_chrY_0000' from sub-workflow 'CallGenome'
[2026-06-05T03:28:42.093851Z] [nf-0ae7f81ff1b5bec98d9608756d4a12ae-4ad67-rxjms] [758_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_023_chrY_0000] Task initiated on local node
[2026-06-05T03:28:42.154485Z] [nf-0ae7f81ff1b5bec98d9608756d4a12ae-4ad67-rxjms] [758_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_023_chrY_0000' launched from sub-workflow 'CallGenome'
[2026-06-05T03:28:42.155070Z] [nf-0ae7f81ff1b5bec98d9608756d4a12ae-4ad67-rxjms] [758_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0010' from sub-workflow 'CallGenome'
[2026-06-05T03:28:42.158847Z] [nf-0ae7f81ff1b5bec98d9608756d4a12ae-4ad67-rxjms] [758_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_008_chr9_0010] Task initiated on local node
[2026-06-05T03:28:42.319641Z] [nf-0ae7f81ff1b5bec98d9608756d4a12ae-4ad67-rxjms] [758_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0008' launched from sub-workflow 'CallGenome'
[2026-06-05T03:28:42.320293Z] [nf-0ae7f81ff1b5bec98d9608756d4a12ae-4ad67-rxjms] [758_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0007' from sub-workflow 'CallGenome'
[2026-06-05T03:28:42.323440Z] [nf-0ae7f81ff1b5bec98d9608756d4a12ae-4ad67-rxjms] [758_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_022_chrX_0007] Task initiated on local node
[2026-06-05T03:28:42.434703Z] [nf-0ae7f81ff1b5bec98d9608756d4a12ae-4ad67-rxjms] [758_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0011' launched from sub-workflow 'CallGenome'
[2026-06-05T03:28:42.435402Z] [nf-0ae7f81ff1b5bec98d9608756d4a12ae-4ad67-rxjms] [758_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_023_chrY_0003' from sub-workflow 'CallGenome'
[2026-06-05T03:28:42.439588Z] [nf-0ae7f81ff1b5bec98d9608756d4a12ae-4ad67-rxjms] [758_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_023_chrY_0003] Task initiated on local node
[2026-06-05T03:28:42.549787Z] [nf-0ae7f81ff1b5bec98d9608756d4a12ae-4ad67-rxjms] [758_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_023_chrY_0003' launched from sub-workflow 'CallGenome'
[2026-06-05T03:28:42.550444Z] [nf-0ae7f81ff1b5bec98d9608756d4a12ae-4ad67-rxjms] [758_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_023_chrY_0003' from sub-workflow 'CallGenome'
[2026-06-05T03:28:42.553287Z] [nf-0ae7f81ff1b5bec98d9608756d4a12ae-4ad67-rxjms] [758_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_023_chrY_0003] Task initiated on local node
[2026-06-05T03:28:42.582358Z] [nf-0ae7f81ff1b5bec98d9608756d4a12ae-4ad67-rxjms] [758_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0010' launched from sub-workflow 'CallGenome'
[2026-06-05T03:28:42.582436Z] [nf-0ae7f81ff1b5bec98d9608756d4a12ae-4ad67-rxjms] [758_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_023_chrY_0003' launched from sub-workflow 'CallGenome'
[2026-06-05T03:28:42.582993Z] [nf-0ae7f81ff1b5bec98d9608756d4a12ae-4ad67-rxjms] [758_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0010' from sub-workflow 'CallGenome'
[2026-06-05T03:28:42.583204Z] [nf-0ae7f81ff1b5bec98d9608756d4a12ae-4ad67-rxjms] [758_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0008' from sub-workflow 'CallGenome'
[2026-06-05T03:28:42.586346Z] [nf-0ae7f81ff1b5bec98d9608756d4a12ae-4ad67-rxjms] [758_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_022_chrX_0010] Task initiated on local node
[2026-06-05T03:28:42.587530Z] [nf-0ae7f81ff1b5bec98d9608756d4a12ae-4ad67-rxjms] [758_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_022_chrX_0008] Task initiated on local node
[2026-06-05T03:28:42.647319Z] [nf-0ae7f81ff1b5bec98d9608756d4a12ae-4ad67-rxjms] [758_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0010' launched from sub-workflow 'CallGenome'
[2026-06-05T03:28:42.647396Z] [nf-0ae7f81ff1b5bec98d9608756d4a12ae-4ad67-rxjms] [758_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0008' launched from sub-workflow 'CallGenome'
[2026-06-05T03:28:42.647967Z] [nf-0ae7f81ff1b5bec98d9608756d4a12ae-4ad67-rxjms] [758_1] [TaskManager] Launching command task: 'CallGenome+fixVcfHeader_chromId_008_chr9_0000' from sub-workflow 'CallGenome'
[2026-06-05T03:28:42.648285Z] [nf-0ae7f81ff1b5bec98d9608756d4a12ae-4ad67-rxjms] [758_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0008' from sub-workflow 'CallGenome'
[2026-06-05T03:28:42.651796Z] [nf-0ae7f81ff1b5bec98d9608756d4a12ae-4ad67-rxjms] [758_1] [TaskRunner:CallGenome+fixVcfHeader_chromId_008_chr9_0000] Task initiated on local node
[2026-06-05T03:28:42.652842Z] [nf-0ae7f81ff1b5bec98d9608756d4a12ae-4ad67-rxjms] [758_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_008_chr9_0008] Task initiated on local node
[2026-06-05T03:28:42.712669Z] [nf-0ae7f81ff1b5bec98d9608756d4a12ae-4ad67-rxjms] [758_1] [TaskManager] Completed command task: 'CallGenome+fixVcfHeader_chromId_008_chr9_0000' launched from sub-workflow 'CallGenome'
[2026-06-05T03:28:42.712759Z] [nf-0ae7f81ff1b5bec98d9608756d4a12ae-4ad67-rxjms] [758_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0008' launched from sub-workflow 'CallGenome'
[2026-06-05T03:28:42.713320Z] [nf-0ae7f81ff1b5bec98d9608756d4a12ae-4ad67-rxjms] [758_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0000' from sub-workflow 'CallGenome'
[2026-06-05T03:28:42.713549Z] [nf-0ae7f81ff1b5bec98d9608756d4a12ae-4ad67-rxjms] [758_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0001' from sub-workflow 'CallGenome'
[2026-06-05T03:28:42.717058Z] [nf-0ae7f81ff1b5bec98d9608756d4a12ae-4ad67-rxjms] [758_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_008_chr9_0001] Task initiated on local node
[2026-06-05T03:28:42.718176Z] [nf-0ae7f81ff1b5bec98d9608756d4a12ae-4ad67-rxjms] [758_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_008_chr9_0000] Task initiated on local node
[2026-06-05T03:28:42.766064Z] [nf-0ae7f81ff1b5bec98d9608756d4a12ae-4ad67-rxjms] [758_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_022_chrX_0001] Task initiated on local node
[2026-06-05T03:28:42.777750Z] [nf-0ae7f81ff1b5bec98d9608756d4a12ae-4ad67-rxjms] [758_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0000' launched from sub-workflow 'CallGenome'
[2026-06-05T03:28:42.777836Z] [nf-0ae7f81ff1b5bec98d9608756d4a12ae-4ad67-rxjms] [758_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0011' launched from sub-workflow 'CallGenome'
[2026-06-05T03:28:42.777867Z] [nf-0ae7f81ff1b5bec98d9608756d4a12ae-4ad67-rxjms] [758_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0001' launched from sub-workflow 'CallGenome'
[2026-06-05T03:28:42.777894Z] [nf-0ae7f81ff1b5bec98d9608756d4a12ae-4ad67-rxjms] [758_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0001' launched from sub-workflow 'CallGenome'
[2026-06-05T03:28:42.778438Z] [nf-0ae7f81ff1b5bec98d9608756d4a12ae-4ad67-rxjms] [758_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0011' from sub-workflow 'CallGenome'
[2026-06-05T03:28:42.778759Z] [nf-0ae7f81ff1b5bec98d9608756d4a12ae-4ad67-rxjms] [758_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_023_chrY_0002' from sub-workflow 'CallGenome'
[2026-06-05T03:28:42.779392Z] [nf-0ae7f81ff1b5bec98d9608756d4a12ae-4ad67-rxjms] [758_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0001' from sub-workflow 'CallGenome'
[2026-06-05T03:28:42.779978Z] [nf-0ae7f81ff1b5bec98d9608756d4a12ae-4ad67-rxjms] [758_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0011' from sub-workflow 'CallGenome'
[2026-06-05T03:28:42.783171Z] [nf-0ae7f81ff1b5bec98d9608756d4a12ae-4ad67-rxjms] [758_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_008_chr9_0011] Task initiated on local node
[2026-06-05T03:28:42.786899Z] [nf-0ae7f81ff1b5bec98d9608756d4a12ae-4ad67-rxjms] [758_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_022_chrX_0011] Task initiated on local node
[2026-06-05T03:28:42.787126Z] [nf-0ae7f81ff1b5bec98d9608756d4a12ae-4ad67-rxjms] [758_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_022_chrX_0001] Task initiated on local node
[2026-06-05T03:28:42.788142Z] [nf-0ae7f81ff1b5bec98d9608756d4a12ae-4ad67-rxjms] [758_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_023_chrY_0002] Task initiated on local node
[2026-06-05T03:28:42.845824Z] [nf-0ae7f81ff1b5bec98d9608756d4a12ae-4ad67-rxjms] [758_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0001' launched from sub-workflow 'CallGenome'
[2026-06-05T03:28:42.845898Z] [nf-0ae7f81ff1b5bec98d9608756d4a12ae-4ad67-rxjms] [758_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0011' launched from sub-workflow 'CallGenome'
[2026-06-05T03:28:42.845932Z] [nf-0ae7f81ff1b5bec98d9608756d4a12ae-4ad67-rxjms] [758_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0011' launched from sub-workflow 'CallGenome'
[2026-06-05T03:28:43.110249Z] [nf-0ae7f81ff1b5bec98d9608756d4a12ae-4ad67-rxjms] [758_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_023_chrY_0002' launched from sub-workflow 'CallGenome'
[2026-06-05T03:28:43.110761Z] [nf-0ae7f81ff1b5bec98d9608756d4a12ae-4ad67-rxjms] [758_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_023_chrY_0002' from sub-workflow 'CallGenome'
[2026-06-05T03:28:43.113728Z] [nf-0ae7f81ff1b5bec98d9608756d4a12ae-4ad67-rxjms] [758_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_023_chrY_0002] Task initiated on local node
[2026-06-05T03:28:43.174977Z] [nf-0ae7f81ff1b5bec98d9608756d4a12ae-4ad67-rxjms] [758_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_023_chrY_0002' launched from sub-workflow 'CallGenome'
[2026-06-05T03:28:43.239017Z] [nf-0ae7f81ff1b5bec98d9608756d4a12ae-4ad67-rxjms] [758_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0007' launched from sub-workflow 'CallGenome'
[2026-06-05T03:28:43.239595Z] [nf-0ae7f81ff1b5bec98d9608756d4a12ae-4ad67-rxjms] [758_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0007' from sub-workflow 'CallGenome'
[2026-06-05T03:28:43.242790Z] [nf-0ae7f81ff1b5bec98d9608756d4a12ae-4ad67-rxjms] [758_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_022_chrX_0007] Task initiated on local node
[2026-06-05T03:28:43.303755Z] [nf-0ae7f81ff1b5bec98d9608756d4a12ae-4ad67-rxjms] [758_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0007' launched from sub-workflow 'CallGenome'
[2026-06-05T03:28:43.518105Z] [nf-0ae7f81ff1b5bec98d9608756d4a12ae-4ad67-rxjms] [758_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0013' launched from sub-workflow 'CallGenome'
[2026-06-05T03:28:43.518813Z] [nf-0ae7f81ff1b5bec98d9608756d4a12ae-4ad67-rxjms] [758_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0013' from sub-workflow 'CallGenome'
[2026-06-05T03:28:43.522148Z] [nf-0ae7f81ff1b5bec98d9608756d4a12ae-4ad67-rxjms] [758_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_022_chrX_0013] Task initiated on local node
[2026-06-05T03:28:43.583087Z] [nf-0ae7f81ff1b5bec98d9608756d4a12ae-4ad67-rxjms] [758_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0013' launched from sub-workflow 'CallGenome'
[2026-06-05T03:28:43.997665Z] [nf-0ae7f81ff1b5bec98d9608756d4a12ae-4ad67-rxjms] [758_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0006' launched from sub-workflow 'CallGenome'
[2026-06-05T03:28:43.998152Z] [nf-0ae7f81ff1b5bec98d9608756d4a12ae-4ad67-rxjms] [758_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0006' from sub-workflow 'CallGenome'
[2026-06-05T03:28:44.001207Z] [nf-0ae7f81ff1b5bec98d9608756d4a12ae-4ad67-rxjms] [758_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_022_chrX_0006] Task initiated on local node
[2026-06-05T03:28:44.062298Z] [nf-0ae7f81ff1b5bec98d9608756d4a12ae-4ad67-rxjms] [758_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0006' launched from sub-workflow 'CallGenome'
[2026-06-05T03:28:44.627227Z] [nf-0ae7f81ff1b5bec98d9608756d4a12ae-4ad67-rxjms] [758_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0010' launched from sub-workflow 'CallGenome'
[2026-06-05T03:28:44.627755Z] [nf-0ae7f81ff1b5bec98d9608756d4a12ae-4ad67-rxjms] [758_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0010' from sub-workflow 'CallGenome'
[2026-06-05T03:28:44.630966Z] [nf-0ae7f81ff1b5bec98d9608756d4a12ae-4ad67-rxjms] [758_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_008_chr9_0010] Task initiated on local node
[2026-06-05T03:28:44.692011Z] [nf-0ae7f81ff1b5bec98d9608756d4a12ae-4ad67-rxjms] [758_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0010' launched from sub-workflow 'CallGenome'
[2026-06-05T03:28:44.692329Z] [nf-0ae7f81ff1b5bec98d9608756d4a12ae-4ad67-rxjms] [758_1] [TaskManager] Completed command task: 'CallGenome+completedAllGenomeSegments' launched from sub-workflow 'CallGenome'
[2026-06-05T03:28:44.692507Z] [nf-0ae7f81ff1b5bec98d9608756d4a12ae-4ad67-rxjms] [758_1] [TaskManager] Launching command task: 'CallGenome+mergeRunStats' from sub-workflow 'CallGenome'
[2026-06-05T03:28:44.692851Z] [nf-0ae7f81ff1b5bec98d9608756d4a12ae-4ad67-rxjms] [758_1] [TaskManager] Launching command task: 'CallGenome+Indel_concat_vcf' from sub-workflow 'CallGenome'
[2026-06-05T03:28:44.693148Z] [nf-0ae7f81ff1b5bec98d9608756d4a12ae-4ad67-rxjms] [758_1] [TaskManager] Launching command task: 'CallGenome+SNV_concat_vcf' from sub-workflow 'CallGenome'
[2026-06-05T03:28:44.697993Z] [nf-0ae7f81ff1b5bec98d9608756d4a12ae-4ad67-rxjms] [758_1] [TaskRunner:CallGenome+SNV_concat_vcf] Task initiated on local node
[2026-06-05T03:28:44.699250Z] [nf-0ae7f81ff1b5bec98d9608756d4a12ae-4ad67-rxjms] [758_1] [TaskRunner:CallGenome+Indel_concat_vcf] Task initiated on local node
[2026-06-05T03:28:44.700235Z] [nf-0ae7f81ff1b5bec98d9608756d4a12ae-4ad67-rxjms] [758_1] [TaskRunner:CallGenome+mergeRunStats] Task initiated on local node
[2026-06-05T03:28:44.725882Z] [nf-0ae7f81ff1b5bec98d9608756d4a12ae-4ad67-rxjms] [758_1] [TaskManager] Completed command task: 'CallGenome+SNV_concat_vcf' launched from sub-workflow 'CallGenome'
[2026-06-05T03:28:44.726141Z] [nf-0ae7f81ff1b5bec98d9608756d4a12ae-4ad67-rxjms] [758_1] [TaskManager] Launching command task: 'CallGenome+SNV_index_vcf' from sub-workflow 'CallGenome'
[2026-06-05T03:28:44.729267Z] [nf-0ae7f81ff1b5bec98d9608756d4a12ae-4ad67-rxjms] [758_1] [TaskRunner:CallGenome+SNV_index_vcf] Task initiated on local node
[2026-06-05T03:28:44.729885Z] [nf-0ae7f81ff1b5bec98d9608756d4a12ae-4ad67-rxjms] [758_1] [TaskManager] Completed command task: 'CallGenome+mergeRunStats' launched from sub-workflow 'CallGenome'
[2026-06-05T03:28:44.729946Z] [nf-0ae7f81ff1b5bec98d9608756d4a12ae-4ad67-rxjms] [758_1] [TaskManager] Completed command task: 'CallGenome+Indel_concat_vcf' launched from sub-workflow 'CallGenome'
[2026-06-05T03:28:44.730182Z] [nf-0ae7f81ff1b5bec98d9608756d4a12ae-4ad67-rxjms] [758_1] [TaskManager] Launching command task: 'CallGenome+Indel_index_vcf' from sub-workflow 'CallGenome'
[2026-06-05T03:28:44.732969Z] [nf-0ae7f81ff1b5bec98d9608756d4a12ae-4ad67-rxjms] [758_1] [TaskRunner:CallGenome+Indel_index_vcf] Task initiated on local node
[2026-06-05T03:28:44.794102Z] [nf-0ae7f81ff1b5bec98d9608756d4a12ae-4ad67-rxjms] [758_1] [TaskManager] Completed command task: 'CallGenome+SNV_index_vcf' launched from sub-workflow 'CallGenome'
[2026-06-05T03:28:44.794177Z] [nf-0ae7f81ff1b5bec98d9608756d4a12ae-4ad67-rxjms] [758_1] [TaskManager] Completed command task: 'CallGenome+Indel_index_vcf' launched from sub-workflow 'CallGenome'
[2026-06-05T03:28:44.794445Z] [nf-0ae7f81ff1b5bec98d9608756d4a12ae-4ad67-rxjms] [758_1] [TaskManager] Launching command task: 'CallGenome+removeTmpDir' from sub-workflow 'CallGenome'
[2026-06-05T03:28:44.797689Z] [nf-0ae7f81ff1b5bec98d9608756d4a12ae-4ad67-rxjms] [758_1] [TaskRunner:CallGenome+removeTmpDir] Task initiated on local node
[2026-06-05T03:28:44.858651Z] [nf-0ae7f81ff1b5bec98d9608756d4a12ae-4ad67-rxjms] [758_1] [TaskManager] Completed command task: 'CallGenome+removeTmpDir' launched from sub-workflow 'CallGenome'
[2026-06-05T03:28:49.730615Z] [nf-0ae7f81ff1b5bec98d9608756d4a12ae-4ad67-rxjms] [758_1] [TaskManager] Completed sub-workflow task: 'CallGenome' launched from master workflow
[2026-06-05T03:28:58.005991Z] [nf-0ae7f81ff1b5bec98d9608756d4a12ae-4ad67-rxjms] [758_1] [WorkflowRunner] Strelka somatic workflow successfully completed.
[2026-06-05T03:28:58.005991Z] [nf-0ae7f81ff1b5bec98d9608756d4a12ae-4ad67-rxjms] [758_1] [WorkflowRunner] 
[2026-06-05T03:28:58.005991Z] [nf-0ae7f81ff1b5bec98d9608756d4a12ae-4ad67-rxjms] [758_1] [WorkflowRunner] 	workflow version: 2.9.10
[2026-06-05T03:28:58.006048Z] [nf-0ae7f81ff1b5bec98d9608756d4a12ae-4ad67-rxjms] [758_1] [WorkflowRunner] 
[2026-06-05T03:28:58.006056Z] [nf-0ae7f81ff1b5bec98d9608756d4a12ae-4ad67-rxjms] [758_1] [WorkflowRunner] Workflow successfully completed all tasks
[2026-06-05T03:28:58.006064Z] [nf-0ae7f81ff1b5bec98d9608756d4a12ae-4ad67-rxjms] [758_1] [WorkflowRunner] Elapsed time for full workflow: 18 sec