Downloading: s3://natera-platform-sandbox/pipeline-resources/ngi-igenomes/igenomes/Homo_sapiens/GATK/GRCh38/Sequence/WholeGenomeFasta/Homo_sapiens_assembly38.fasta
  Downloading: s3://natera-platform-sandbox/pipeline-resources/AIH/dna_daq/stored-normals/reference-NA12878-downsampled-500k.bam
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/d1/c1b7d2a298a8b5bbba54ad67dec5b6/HCC1395_tumor.recalibrated.bam.bai
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/67/debace85465768d5f0d72ccd0f3572/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/d1/c1b7d2a298a8b5bbba54ad67dec5b6/HCC1395_tumor.recalibrated.bam
  Downloading: s3://natera-platform-sandbox/pipeline-resources/ngi-igenomes/igenomes/Homo_sapiens/GATK/GRCh38/Sequence/WholeGenomeFasta/Homo_sapiens_assembly38.fasta.fai
  Downloading: s3://natera-platform-sandbox/pipeline-resources/AIH/dna_daq/stored-normals/reference-NA12878-downsampled-500k.bam.bai
  Downloading: s3://natera-platform-sandbox/pipeline-resources/ngi-igenomes/igenomes/Homo_sapiens/GATK/GRCh38/Annotation/intervals/altera_padded_intervals/scatter/chr20_14085521-14085828.bed.gz.tbi
  Downloading: s3://natera-platform-sandbox/pipeline-resources/ngi-igenomes/igenomes/Homo_sapiens/GATK/GRCh38/Annotation/intervals/altera_padded_intervals/scatter/chr20_14085521-14085828.bed.gz
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/67/debace85465768d5f0d72ccd0f3572/.command.run
==> STAGING COMPLETE (10 inputs)


Successfully created workflow run script.
To execute the workflow, run the following script and set appropriate options:

/var/tmp/strelka/runWorkflow.py
[2026-06-05T03:28:38.330727Z] [nf-67debace85465768d5f0d72ccd0f3572-475ac-rfg8n] [592_1] [WorkflowRunner] Initiating pyFlow run
[2026-06-05T03:28:38.331516Z] [nf-67debace85465768d5f0d72ccd0f3572-475ac-rfg8n] [592_1] [WorkflowRunner] pyFlowClientWorkflowClass: StrelkaSomaticWorkflow
[2026-06-05T03:28:38.331528Z] [nf-67debace85465768d5f0d72ccd0f3572-475ac-rfg8n] [592_1] [WorkflowRunner] pyFlowVersion: 1.1.20
[2026-06-05T03:28:38.331532Z] [nf-67debace85465768d5f0d72ccd0f3572-475ac-rfg8n] [592_1] [WorkflowRunner] pythonVersion: 2.7.15.final.0
[2026-06-05T03:28:38.331536Z] [nf-67debace85465768d5f0d72ccd0f3572-475ac-rfg8n] [592_1] [WorkflowRunner] WorkingDir: '/tmp/nxf.XXXXhYSFpm'
[2026-06-05T03:28:38.331540Z] [nf-67debace85465768d5f0d72ccd0f3572-475ac-rfg8n] [592_1] [WorkflowRunner] ProcessCmdLine: '/var/tmp/strelka/runWorkflow.py -m local -j 8'
[2026-06-05T03:28:38.331545Z] [nf-67debace85465768d5f0d72ccd0f3572-475ac-rfg8n] [592_1] [WorkflowRunner] [RunParameters] mode: local
[2026-06-05T03:28:38.331549Z] [nf-67debace85465768d5f0d72ccd0f3572-475ac-rfg8n] [592_1] [WorkflowRunner] [RunParameters] nCores: 8
[2026-06-05T03:28:38.331553Z] [nf-67debace85465768d5f0d72ccd0f3572-475ac-rfg8n] [592_1] [WorkflowRunner] [RunParameters] memMb: 761785
[2026-06-05T03:28:38.331556Z] [nf-67debace85465768d5f0d72ccd0f3572-475ac-rfg8n] [592_1] [WorkflowRunner] [RunParameters] dataDir: /var/tmp/strelka/workspace/pyflow.data
[2026-06-05T03:28:38.331560Z] [nf-67debace85465768d5f0d72ccd0f3572-475ac-rfg8n] [592_1] [WorkflowRunner] [RunParameters] isDryRun: False
[2026-06-05T03:28:38.331564Z] [nf-67debace85465768d5f0d72ccd0f3572-475ac-rfg8n] [592_1] [WorkflowRunner] [RunParameters] isContinue: False
[2026-06-05T03:28:38.331568Z] [nf-67debace85465768d5f0d72ccd0f3572-475ac-rfg8n] [592_1] [WorkflowRunner] [RunParameters] isForceContinue: True
[2026-06-05T03:28:38.331571Z] [nf-67debace85465768d5f0d72ccd0f3572-475ac-rfg8n] [592_1] [WorkflowRunner] [RunParameters] mailTo: ''
[2026-06-05T03:28:38.332307Z] [nf-67debace85465768d5f0d72ccd0f3572-475ac-rfg8n] [592_1] [TaskRunner:masterWorkflow] Starting task specification for master workflow
[2026-06-05T03:28:38.332421Z] [nf-67debace85465768d5f0d72ccd0f3572-475ac-rfg8n] [592_1] [StrelkaSomaticWorkflow] Initiating Strelka somatic workflow version: 2.9.10
[2026-06-05T03:28:38.338812Z] [nf-67debace85465768d5f0d72ccd0f3572-475ac-rfg8n] [592_1] [WorkflowRunner] Adding sub-workflow task 'CallGenome' to master workflow
[2026-06-05T03:28:38.339324Z] [nf-67debace85465768d5f0d72ccd0f3572-475ac-rfg8n] [592_1] [TaskRunner:masterWorkflow] Finished task specification for master workflow
[2026-06-05T03:28:38.339528Z] [nf-67debace85465768d5f0d72ccd0f3572-475ac-rfg8n] [592_1] [TaskManager] Launching sub-workflow task: 'CallGenome' from master workflow
[2026-06-05T03:28:38.339774Z] [nf-67debace85465768d5f0d72ccd0f3572-475ac-rfg8n] [592_1] [TaskRunner:CallGenome] Starting task specification for sub-workflow
[2026-06-05T03:28:38.340067Z] [nf-67debace85465768d5f0d72ccd0f3572-475ac-rfg8n] [592_1] [WorkflowRunner] Adding command task 'CallGenome+makeTmpDir' to sub-workflow 'CallGenome'
[2026-06-05T03:28:38.340489Z] [nf-67debace85465768d5f0d72ccd0f3572-475ac-rfg8n] [592_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_002_chr3_0000' to sub-workflow 'CallGenome'
[2026-06-05T03:28:38.340580Z] [nf-67debace85465768d5f0d72ccd0f3572-475ac-rfg8n] [592_1] [WorkflowRunner] Adding command task 'CallGenome+fixVcfHeader_chromId_002_chr3_0000' to sub-workflow 'CallGenome'
[2026-06-05T03:28:38.340651Z] [nf-67debace85465768d5f0d72ccd0f3572-475ac-rfg8n] [592_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_002_chr3_0000' to sub-workflow 'CallGenome'
[2026-06-05T03:28:38.340771Z] [nf-67debace85465768d5f0d72ccd0f3572-475ac-rfg8n] [592_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_002_chr3_0001' to sub-workflow 'CallGenome'
[2026-06-05T03:28:38.340837Z] [nf-67debace85465768d5f0d72ccd0f3572-475ac-rfg8n] [592_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_002_chr3_0001' to sub-workflow 'CallGenome'
[2026-06-05T03:28:38.340952Z] [nf-67debace85465768d5f0d72ccd0f3572-475ac-rfg8n] [592_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_002_chr3_0002' to sub-workflow 'CallGenome'
[2026-06-05T03:28:38.341014Z] [nf-67debace85465768d5f0d72ccd0f3572-475ac-rfg8n] [592_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_002_chr3_0002' to sub-workflow 'CallGenome'
[2026-06-05T03:28:38.341129Z] [nf-67debace85465768d5f0d72ccd0f3572-475ac-rfg8n] [592_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_002_chr3_0003' to sub-workflow 'CallGenome'
[2026-06-05T03:28:38.341370Z] [nf-67debace85465768d5f0d72ccd0f3572-475ac-rfg8n] [592_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_002_chr3_0003' to sub-workflow 'CallGenome'
[2026-06-05T03:28:38.341738Z] [nf-67debace85465768d5f0d72ccd0f3572-475ac-rfg8n] [592_1] [TaskManager] Launching command task: 'CallGenome+makeTmpDir' from sub-workflow 'CallGenome'
[2026-06-05T03:28:38.341905Z] [nf-67debace85465768d5f0d72ccd0f3572-475ac-rfg8n] [592_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_002_chr3_0004' to sub-workflow 'CallGenome'
[2026-06-05T03:28:38.341985Z] [nf-67debace85465768d5f0d72ccd0f3572-475ac-rfg8n] [592_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_002_chr3_0004' to sub-workflow 'CallGenome'
[2026-06-05T03:28:38.342404Z] [nf-67debace85465768d5f0d72ccd0f3572-475ac-rfg8n] [592_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_002_chr3_0005' to sub-workflow 'CallGenome'
[2026-06-05T03:28:38.342910Z] [nf-67debace85465768d5f0d72ccd0f3572-475ac-rfg8n] [592_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_002_chr3_0005' to sub-workflow 'CallGenome'
[2026-06-05T03:28:38.344757Z] [nf-67debace85465768d5f0d72ccd0f3572-475ac-rfg8n] [592_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_002_chr3_0006' to sub-workflow 'CallGenome'
[2026-06-05T03:28:38.344993Z] [nf-67debace85465768d5f0d72ccd0f3572-475ac-rfg8n] [592_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_002_chr3_0006' to sub-workflow 'CallGenome'
[2026-06-05T03:28:38.345295Z] [nf-67debace85465768d5f0d72ccd0f3572-475ac-rfg8n] [592_1] [TaskRunner:CallGenome+makeTmpDir] Task initiated on local node
[2026-06-05T03:28:38.345428Z] [nf-67debace85465768d5f0d72ccd0f3572-475ac-rfg8n] [592_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_002_chr3_0007' to sub-workflow 'CallGenome'
[2026-06-05T03:28:38.345533Z] [nf-67debace85465768d5f0d72ccd0f3572-475ac-rfg8n] [592_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_002_chr3_0007' to sub-workflow 'CallGenome'
[2026-06-05T03:28:38.346073Z] [nf-67debace85465768d5f0d72ccd0f3572-475ac-rfg8n] [592_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_002_chr3_0008' to sub-workflow 'CallGenome'
[2026-06-05T03:28:38.346261Z] [nf-67debace85465768d5f0d72ccd0f3572-475ac-rfg8n] [592_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_002_chr3_0008' to sub-workflow 'CallGenome'
[2026-06-05T03:28:38.346384Z] [nf-67debace85465768d5f0d72ccd0f3572-475ac-rfg8n] [592_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_002_chr3_0009' to sub-workflow 'CallGenome'
[2026-06-05T03:28:38.346457Z] [nf-67debace85465768d5f0d72ccd0f3572-475ac-rfg8n] [592_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_002_chr3_0009' to sub-workflow 'CallGenome'
[2026-06-05T03:28:38.346572Z] [nf-67debace85465768d5f0d72ccd0f3572-475ac-rfg8n] [592_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_002_chr3_0010' to sub-workflow 'CallGenome'
[2026-06-05T03:28:38.346640Z] [nf-67debace85465768d5f0d72ccd0f3572-475ac-rfg8n] [592_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_002_chr3_0010' to sub-workflow 'CallGenome'
[2026-06-05T03:28:38.346756Z] [nf-67debace85465768d5f0d72ccd0f3572-475ac-rfg8n] [592_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_002_chr3_0011' to sub-workflow 'CallGenome'
[2026-06-05T03:28:38.346822Z] [nf-67debace85465768d5f0d72ccd0f3572-475ac-rfg8n] [592_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_002_chr3_0011' to sub-workflow 'CallGenome'
[2026-06-05T03:28:38.346932Z] [nf-67debace85465768d5f0d72ccd0f3572-475ac-rfg8n] [592_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_002_chr3_0012' to sub-workflow 'CallGenome'
[2026-06-05T03:28:38.346999Z] [nf-67debace85465768d5f0d72ccd0f3572-475ac-rfg8n] [592_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_002_chr3_0012' to sub-workflow 'CallGenome'
[2026-06-05T03:28:38.347110Z] [nf-67debace85465768d5f0d72ccd0f3572-475ac-rfg8n] [592_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_002_chr3_0013' to sub-workflow 'CallGenome'
[2026-06-05T03:28:38.347200Z] [nf-67debace85465768d5f0d72ccd0f3572-475ac-rfg8n] [592_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_002_chr3_0013' to sub-workflow 'CallGenome'
[2026-06-05T03:28:38.347528Z] [nf-67debace85465768d5f0d72ccd0f3572-475ac-rfg8n] [592_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_002_chr3_0014' to sub-workflow 'CallGenome'
[2026-06-05T03:28:38.347791Z] [nf-67debace85465768d5f0d72ccd0f3572-475ac-rfg8n] [592_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_002_chr3_0014' to sub-workflow 'CallGenome'
[2026-06-05T03:28:38.347905Z] [nf-67debace85465768d5f0d72ccd0f3572-475ac-rfg8n] [592_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_002_chr3_0015' to sub-workflow 'CallGenome'
[2026-06-05T03:28:38.348013Z] [nf-67debace85465768d5f0d72ccd0f3572-475ac-rfg8n] [592_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_002_chr3_0015' to sub-workflow 'CallGenome'
[2026-06-05T03:28:38.348129Z] [nf-67debace85465768d5f0d72ccd0f3572-475ac-rfg8n] [592_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_002_chr3_0016' to sub-workflow 'CallGenome'
[2026-06-05T03:28:38.348196Z] [nf-67debace85465768d5f0d72ccd0f3572-475ac-rfg8n] [592_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_002_chr3_0016' to sub-workflow 'CallGenome'
[2026-06-05T03:28:38.348313Z] [nf-67debace85465768d5f0d72ccd0f3572-475ac-rfg8n] [592_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_003_chr4_0000' to sub-workflow 'CallGenome'
[2026-06-05T03:28:38.348375Z] [nf-67debace85465768d5f0d72ccd0f3572-475ac-rfg8n] [592_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_003_chr4_0000' to sub-workflow 'CallGenome'
[2026-06-05T03:28:38.348489Z] [nf-67debace85465768d5f0d72ccd0f3572-475ac-rfg8n] [592_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_003_chr4_0001' to sub-workflow 'CallGenome'
[2026-06-05T03:28:38.348551Z] [nf-67debace85465768d5f0d72ccd0f3572-475ac-rfg8n] [592_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_003_chr4_0001' to sub-workflow 'CallGenome'
[2026-06-05T03:28:38.348659Z] [nf-67debace85465768d5f0d72ccd0f3572-475ac-rfg8n] [592_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_003_chr4_0002' to sub-workflow 'CallGenome'
[2026-06-05T03:28:38.348726Z] [nf-67debace85465768d5f0d72ccd0f3572-475ac-rfg8n] [592_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_003_chr4_0002' to sub-workflow 'CallGenome'
[2026-06-05T03:28:38.348969Z] [nf-67debace85465768d5f0d72ccd0f3572-475ac-rfg8n] [592_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_003_chr4_0003' to sub-workflow 'CallGenome'
[2026-06-05T03:28:38.349273Z] [nf-67debace85465768d5f0d72ccd0f3572-475ac-rfg8n] [592_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_003_chr4_0003' to sub-workflow 'CallGenome'
[2026-06-05T03:28:38.349389Z] [nf-67debace85465768d5f0d72ccd0f3572-475ac-rfg8n] [592_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_003_chr4_0004' to sub-workflow 'CallGenome'
[2026-06-05T03:28:38.349456Z] [nf-67debace85465768d5f0d72ccd0f3572-475ac-rfg8n] [592_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_003_chr4_0004' to sub-workflow 'CallGenome'
[2026-06-05T03:28:38.349624Z] [nf-67debace85465768d5f0d72ccd0f3572-475ac-rfg8n] [592_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_003_chr4_0005' to sub-workflow 'CallGenome'
[2026-06-05T03:28:38.349691Z] [nf-67debace85465768d5f0d72ccd0f3572-475ac-rfg8n] [592_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_003_chr4_0005' to sub-workflow 'CallGenome'
[2026-06-05T03:28:38.349799Z] [nf-67debace85465768d5f0d72ccd0f3572-475ac-rfg8n] [592_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_003_chr4_0006' to sub-workflow 'CallGenome'
[2026-06-05T03:28:38.349864Z] [nf-67debace85465768d5f0d72ccd0f3572-475ac-rfg8n] [592_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_003_chr4_0006' to sub-workflow 'CallGenome'
[2026-06-05T03:28:38.349973Z] [nf-67debace85465768d5f0d72ccd0f3572-475ac-rfg8n] [592_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_003_chr4_0007' to sub-workflow 'CallGenome'
[2026-06-05T03:28:38.350037Z] [nf-67debace85465768d5f0d72ccd0f3572-475ac-rfg8n] [592_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_003_chr4_0007' to sub-workflow 'CallGenome'
[2026-06-05T03:28:38.350145Z] [nf-67debace85465768d5f0d72ccd0f3572-475ac-rfg8n] [592_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_003_chr4_0008' to sub-workflow 'CallGenome'
[2026-06-05T03:28:38.350208Z] [nf-67debace85465768d5f0d72ccd0f3572-475ac-rfg8n] [592_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_003_chr4_0008' to sub-workflow 'CallGenome'
[2026-06-05T03:28:38.350507Z] [nf-67debace85465768d5f0d72ccd0f3572-475ac-rfg8n] [592_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_003_chr4_0009' to sub-workflow 'CallGenome'
[2026-06-05T03:28:38.350881Z] [nf-67debace85465768d5f0d72ccd0f3572-475ac-rfg8n] [592_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_003_chr4_0009' to sub-workflow 'CallGenome'
[2026-06-05T03:28:38.350989Z] [nf-67debace85465768d5f0d72ccd0f3572-475ac-rfg8n] [592_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_003_chr4_0010' to sub-workflow 'CallGenome'
[2026-06-05T03:28:38.351054Z] [nf-67debace85465768d5f0d72ccd0f3572-475ac-rfg8n] [592_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_003_chr4_0010' to sub-workflow 'CallGenome'
[2026-06-05T03:28:38.351164Z] [nf-67debace85465768d5f0d72ccd0f3572-475ac-rfg8n] [592_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_003_chr4_0011' to sub-workflow 'CallGenome'
[2026-06-05T03:28:38.351230Z] [nf-67debace85465768d5f0d72ccd0f3572-475ac-rfg8n] [592_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_003_chr4_0011' to sub-workflow 'CallGenome'
[2026-06-05T03:28:38.351359Z] [nf-67debace85465768d5f0d72ccd0f3572-475ac-rfg8n] [592_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_003_chr4_0012' to sub-workflow 'CallGenome'
[2026-06-05T03:28:38.351432Z] [nf-67debace85465768d5f0d72ccd0f3572-475ac-rfg8n] [592_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_003_chr4_0012' to sub-workflow 'CallGenome'
[2026-06-05T03:28:38.351547Z] [nf-67debace85465768d5f0d72ccd0f3572-475ac-rfg8n] [592_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_003_chr4_0013' to sub-workflow 'CallGenome'
[2026-06-05T03:28:38.351641Z] [nf-67debace85465768d5f0d72ccd0f3572-475ac-rfg8n] [592_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_003_chr4_0013' to sub-workflow 'CallGenome'
[2026-06-05T03:28:38.351759Z] [nf-67debace85465768d5f0d72ccd0f3572-475ac-rfg8n] [592_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_003_chr4_0014' to sub-workflow 'CallGenome'
[2026-06-05T03:28:38.351824Z] [nf-67debace85465768d5f0d72ccd0f3572-475ac-rfg8n] [592_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_003_chr4_0014' to sub-workflow 'CallGenome'
[2026-06-05T03:28:38.352963Z] [nf-67debace85465768d5f0d72ccd0f3572-475ac-rfg8n] [592_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_003_chr4_0015' to sub-workflow 'CallGenome'
[2026-06-05T03:28:38.353493Z] [nf-67debace85465768d5f0d72ccd0f3572-475ac-rfg8n] [592_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_003_chr4_0015' to sub-workflow 'CallGenome'
[2026-06-05T03:28:38.353648Z] [nf-67debace85465768d5f0d72ccd0f3572-475ac-rfg8n] [592_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_019_chr20_0000' to sub-workflow 'CallGenome'
[2026-06-05T03:28:38.353720Z] [nf-67debace85465768d5f0d72ccd0f3572-475ac-rfg8n] [592_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_019_chr20_0000' to sub-workflow 'CallGenome'
[2026-06-05T03:28:38.353837Z] [nf-67debace85465768d5f0d72ccd0f3572-475ac-rfg8n] [592_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_019_chr20_0001' to sub-workflow 'CallGenome'
[2026-06-05T03:28:38.353906Z] [nf-67debace85465768d5f0d72ccd0f3572-475ac-rfg8n] [592_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_019_chr20_0001' to sub-workflow 'CallGenome'
[2026-06-05T03:28:38.355528Z] [nf-67debace85465768d5f0d72ccd0f3572-475ac-rfg8n] [592_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_019_chr20_0002' to sub-workflow 'CallGenome'
[2026-06-05T03:28:38.356033Z] [nf-67debace85465768d5f0d72ccd0f3572-475ac-rfg8n] [592_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_019_chr20_0002' to sub-workflow 'CallGenome'
[2026-06-05T03:28:38.356166Z] [nf-67debace85465768d5f0d72ccd0f3572-475ac-rfg8n] [592_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_019_chr20_0003' to sub-workflow 'CallGenome'
[2026-06-05T03:28:38.356236Z] [nf-67debace85465768d5f0d72ccd0f3572-475ac-rfg8n] [592_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_019_chr20_0003' to sub-workflow 'CallGenome'
[2026-06-05T03:28:38.356357Z] [nf-67debace85465768d5f0d72ccd0f3572-475ac-rfg8n] [592_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_019_chr20_0004' to sub-workflow 'CallGenome'
[2026-06-05T03:28:38.356423Z] [nf-67debace85465768d5f0d72ccd0f3572-475ac-rfg8n] [592_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_019_chr20_0004' to sub-workflow 'CallGenome'
[2026-06-05T03:28:38.356538Z] [nf-67debace85465768d5f0d72ccd0f3572-475ac-rfg8n] [592_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_019_chr20_0005' to sub-workflow 'CallGenome'
[2026-06-05T03:28:38.356600Z] [nf-67debace85465768d5f0d72ccd0f3572-475ac-rfg8n] [592_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_019_chr20_0005' to sub-workflow 'CallGenome'
[2026-06-05T03:28:38.356717Z] [nf-67debace85465768d5f0d72ccd0f3572-475ac-rfg8n] [592_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_020_chr21_0000' to sub-workflow 'CallGenome'
[2026-06-05T03:28:38.356779Z] [nf-67debace85465768d5f0d72ccd0f3572-475ac-rfg8n] [592_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_020_chr21_0000' to sub-workflow 'CallGenome'
[2026-06-05T03:28:38.356894Z] [nf-67debace85465768d5f0d72ccd0f3572-475ac-rfg8n] [592_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_020_chr21_0001' to sub-workflow 'CallGenome'
[2026-06-05T03:28:38.356961Z] [nf-67debace85465768d5f0d72ccd0f3572-475ac-rfg8n] [592_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_020_chr21_0001' to sub-workflow 'CallGenome'
[2026-06-05T03:28:38.357200Z] [nf-67debace85465768d5f0d72ccd0f3572-475ac-rfg8n] [592_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_020_chr21_0002' to sub-workflow 'CallGenome'
[2026-06-05T03:28:38.357773Z] [nf-67debace85465768d5f0d72ccd0f3572-475ac-rfg8n] [592_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_020_chr21_0002' to sub-workflow 'CallGenome'
[2026-06-05T03:28:38.357881Z] [nf-67debace85465768d5f0d72ccd0f3572-475ac-rfg8n] [592_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_020_chr21_0003' to sub-workflow 'CallGenome'
[2026-06-05T03:28:38.357945Z] [nf-67debace85465768d5f0d72ccd0f3572-475ac-rfg8n] [592_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_020_chr21_0003' to sub-workflow 'CallGenome'
[2026-06-05T03:28:38.358057Z] [nf-67debace85465768d5f0d72ccd0f3572-475ac-rfg8n] [592_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_021_chr22_0000' to sub-workflow 'CallGenome'
[2026-06-05T03:28:38.358123Z] [nf-67debace85465768d5f0d72ccd0f3572-475ac-rfg8n] [592_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_021_chr22_0000' to sub-workflow 'CallGenome'
[2026-06-05T03:28:38.358227Z] [nf-67debace85465768d5f0d72ccd0f3572-475ac-rfg8n] [592_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_021_chr22_0001' to sub-workflow 'CallGenome'
[2026-06-05T03:28:38.358288Z] [nf-67debace85465768d5f0d72ccd0f3572-475ac-rfg8n] [592_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_021_chr22_0001' to sub-workflow 'CallGenome'
[2026-06-05T03:28:38.358401Z] [nf-67debace85465768d5f0d72ccd0f3572-475ac-rfg8n] [592_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_021_chr22_0002' to sub-workflow 'CallGenome'
[2026-06-05T03:28:38.358461Z] [nf-67debace85465768d5f0d72ccd0f3572-475ac-rfg8n] [592_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_021_chr22_0002' to sub-workflow 'CallGenome'
[2026-06-05T03:28:38.358572Z] [nf-67debace85465768d5f0d72ccd0f3572-475ac-rfg8n] [592_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_021_chr22_0003' to sub-workflow 'CallGenome'
[2026-06-05T03:28:38.358632Z] [nf-67debace85465768d5f0d72ccd0f3572-475ac-rfg8n] [592_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_021_chr22_0003' to sub-workflow 'CallGenome'
[2026-06-05T03:28:38.374214Z] [nf-67debace85465768d5f0d72ccd0f3572-475ac-rfg8n] [592_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_021_chr22_0004' to sub-workflow 'CallGenome'
[2026-06-05T03:28:38.374547Z] [nf-67debace85465768d5f0d72ccd0f3572-475ac-rfg8n] [592_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_021_chr22_0004' to sub-workflow 'CallGenome'
[2026-06-05T03:28:38.374726Z] [nf-67debace85465768d5f0d72ccd0f3572-475ac-rfg8n] [592_1] [TaskManager] Completed command task: 'CallGenome+makeTmpDir' launched from sub-workflow 'CallGenome'
[2026-06-05T03:28:38.374828Z] [nf-67debace85465768d5f0d72ccd0f3572-475ac-rfg8n] [592_1] [WorkflowRunner] Adding command task 'CallGenome+completedAllGenomeSegments' to sub-workflow 'CallGenome'
[2026-06-05T03:28:38.375958Z] [nf-67debace85465768d5f0d72ccd0f3572-475ac-rfg8n] [592_1] [WorkflowRunner] Adding command task 'CallGenome+SNV_concat_vcf' to sub-workflow 'CallGenome'
[2026-06-05T03:28:38.376124Z] [nf-67debace85465768d5f0d72ccd0f3572-475ac-rfg8n] [592_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_021_chr22_0001' from sub-workflow 'CallGenome'
[2026-06-05T03:28:38.376304Z] [nf-67debace85465768d5f0d72ccd0f3572-475ac-rfg8n] [592_1] [WorkflowRunner] Adding command task 'CallGenome+SNV_index_vcf' to sub-workflow 'CallGenome'
[2026-06-05T03:28:38.376825Z] [nf-67debace85465768d5f0d72ccd0f3572-475ac-rfg8n] [592_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_021_chr22_0002' from sub-workflow 'CallGenome'
[2026-06-05T03:28:38.377011Z] [nf-67debace85465768d5f0d72ccd0f3572-475ac-rfg8n] [592_1] [WorkflowRunner] Adding command task 'CallGenome+Indel_concat_vcf' to sub-workflow 'CallGenome'
[2026-06-05T03:28:38.377325Z] [nf-67debace85465768d5f0d72ccd0f3572-475ac-rfg8n] [592_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_002_chr3_0009' from sub-workflow 'CallGenome'
[2026-06-05T03:28:38.377613Z] [nf-67debace85465768d5f0d72ccd0f3572-475ac-rfg8n] [592_1] [WorkflowRunner] Adding command task 'CallGenome+Indel_index_vcf' to sub-workflow 'CallGenome'
[2026-06-05T03:28:38.377890Z] [nf-67debace85465768d5f0d72ccd0f3572-475ac-rfg8n] [592_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0012' from sub-workflow 'CallGenome'
[2026-06-05T03:28:38.378865Z] [nf-67debace85465768d5f0d72ccd0f3572-475ac-rfg8n] [592_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0010' from sub-workflow 'CallGenome'
[2026-06-05T03:28:38.379301Z] [nf-67debace85465768d5f0d72ccd0f3572-475ac-rfg8n] [592_1] [WorkflowRunner] Adding command task 'CallGenome+mergeRunStats' to sub-workflow 'CallGenome'
[2026-06-05T03:28:38.379658Z] [nf-67debace85465768d5f0d72ccd0f3572-475ac-rfg8n] [592_1] [WorkflowRunner] Adding command task 'CallGenome+removeTmpDir' to sub-workflow 'CallGenome'
[2026-06-05T03:28:38.380378Z] [nf-67debace85465768d5f0d72ccd0f3572-475ac-rfg8n] [592_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_002_chr3_0006' from sub-workflow 'CallGenome'
[2026-06-05T03:28:38.380760Z] [nf-67debace85465768d5f0d72ccd0f3572-475ac-rfg8n] [592_1] [TaskRunner:CallGenome] Finished task specification for sub-workflow
[2026-06-05T03:28:38.382275Z] [nf-67debace85465768d5f0d72ccd0f3572-475ac-rfg8n] [592_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_021_chr22_0004' from sub-workflow 'CallGenome'
[2026-06-05T03:28:38.382996Z] [nf-67debace85465768d5f0d72ccd0f3572-475ac-rfg8n] [592_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_021_chr22_0001] Task initiated on local node
[2026-06-05T03:28:38.383690Z] [nf-67debace85465768d5f0d72ccd0f3572-475ac-rfg8n] [592_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0005' from sub-workflow 'CallGenome'
[2026-06-05T03:28:38.388872Z] [nf-67debace85465768d5f0d72ccd0f3572-475ac-rfg8n] [592_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_002_chr3_0009] Task initiated on local node
[2026-06-05T03:28:38.393891Z] [nf-67debace85465768d5f0d72ccd0f3572-475ac-rfg8n] [592_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_003_chr4_0012] Task initiated on local node
[2026-06-05T03:28:38.394270Z] [nf-67debace85465768d5f0d72ccd0f3572-475ac-rfg8n] [592_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_003_chr4_0010] Task initiated on local node
[2026-06-05T03:28:38.398364Z] [nf-67debace85465768d5f0d72ccd0f3572-475ac-rfg8n] [592_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_021_chr22_0002] Task initiated on local node
[2026-06-05T03:28:38.399132Z] [nf-67debace85465768d5f0d72ccd0f3572-475ac-rfg8n] [592_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_021_chr22_0004] Task initiated on local node
[2026-06-05T03:28:38.401992Z] [nf-67debace85465768d5f0d72ccd0f3572-475ac-rfg8n] [592_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_002_chr3_0006] Task initiated on local node
[2026-06-05T03:28:38.403108Z] [nf-67debace85465768d5f0d72ccd0f3572-475ac-rfg8n] [592_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_003_chr4_0005] Task initiated on local node
[2026-06-05T03:28:38.466526Z] [nf-67debace85465768d5f0d72ccd0f3572-475ac-rfg8n] [592_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0012' launched from sub-workflow 'CallGenome'
[2026-06-05T03:28:38.466586Z] [nf-67debace85465768d5f0d72ccd0f3572-475ac-rfg8n] [592_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0010' launched from sub-workflow 'CallGenome'
[2026-06-05T03:28:38.466610Z] [nf-67debace85465768d5f0d72ccd0f3572-475ac-rfg8n] [592_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0005' launched from sub-workflow 'CallGenome'
[2026-06-05T03:28:38.467413Z] [nf-67debace85465768d5f0d72ccd0f3572-475ac-rfg8n] [592_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_019_chr20_0001' from sub-workflow 'CallGenome'
[2026-06-05T03:28:38.467965Z] [nf-67debace85465768d5f0d72ccd0f3572-475ac-rfg8n] [592_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0005' from sub-workflow 'CallGenome'
[2026-06-05T03:28:38.469630Z] [nf-67debace85465768d5f0d72ccd0f3572-475ac-rfg8n] [592_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0008' from sub-workflow 'CallGenome'
[2026-06-05T03:28:38.470456Z] [nf-67debace85465768d5f0d72ccd0f3572-475ac-rfg8n] [592_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_019_chr20_0001] Task initiated on local node
[2026-06-05T03:28:38.472852Z] [nf-67debace85465768d5f0d72ccd0f3572-475ac-rfg8n] [592_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_003_chr4_0005] Task initiated on local node
[2026-06-05T03:28:38.473961Z] [nf-67debace85465768d5f0d72ccd0f3572-475ac-rfg8n] [592_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_003_chr4_0008] Task initiated on local node
[2026-06-05T03:28:38.502256Z] [nf-67debace85465768d5f0d72ccd0f3572-475ac-rfg8n] [592_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0005' launched from sub-workflow 'CallGenome'
[2026-06-05T03:28:38.503230Z] [nf-67debace85465768d5f0d72ccd0f3572-475ac-rfg8n] [592_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_002_chr3_0003' from sub-workflow 'CallGenome'
[2026-06-05T03:28:38.506111Z] [nf-67debace85465768d5f0d72ccd0f3572-475ac-rfg8n] [592_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_002_chr3_0003] Task initiated on local node
[2026-06-05T03:28:38.535217Z] [nf-67debace85465768d5f0d72ccd0f3572-475ac-rfg8n] [592_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0008' launched from sub-workflow 'CallGenome'
[2026-06-05T03:28:38.536295Z] [nf-67debace85465768d5f0d72ccd0f3572-475ac-rfg8n] [592_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_020_chr21_0000' from sub-workflow 'CallGenome'
[2026-06-05T03:28:38.539051Z] [nf-67debace85465768d5f0d72ccd0f3572-475ac-rfg8n] [592_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_020_chr21_0000] Task initiated on local node
[2026-06-05T03:28:39.102267Z] [nf-67debace85465768d5f0d72ccd0f3572-475ac-rfg8n] [592_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_020_chr21_0000' launched from sub-workflow 'CallGenome'
[2026-06-05T03:28:39.103355Z] [nf-67debace85465768d5f0d72ccd0f3572-475ac-rfg8n] [592_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0002' from sub-workflow 'CallGenome'
[2026-06-05T03:28:39.106171Z] [nf-67debace85465768d5f0d72ccd0f3572-475ac-rfg8n] [592_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_003_chr4_0002] Task initiated on local node
[2026-06-05T03:28:39.135528Z] [nf-67debace85465768d5f0d72ccd0f3572-475ac-rfg8n] [592_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_021_chr22_0001' launched from sub-workflow 'CallGenome'
[2026-06-05T03:28:39.136719Z] [nf-67debace85465768d5f0d72ccd0f3572-475ac-rfg8n] [592_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0007' from sub-workflow 'CallGenome'
[2026-06-05T03:28:39.139460Z] [nf-67debace85465768d5f0d72ccd0f3572-475ac-rfg8n] [592_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_003_chr4_0007] Task initiated on local node
[2026-06-05T03:28:39.168778Z] [nf-67debace85465768d5f0d72ccd0f3572-475ac-rfg8n] [592_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0002' launched from sub-workflow 'CallGenome'
[2026-06-05T03:28:39.169831Z] [nf-67debace85465768d5f0d72ccd0f3572-475ac-rfg8n] [592_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_002_chr3_0012' from sub-workflow 'CallGenome'
[2026-06-05T03:28:39.172587Z] [nf-67debace85465768d5f0d72ccd0f3572-475ac-rfg8n] [592_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_002_chr3_0012] Task initiated on local node
[2026-06-05T03:28:39.201805Z] [nf-67debace85465768d5f0d72ccd0f3572-475ac-rfg8n] [592_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0007' launched from sub-workflow 'CallGenome'
[2026-06-05T03:28:39.202846Z] [nf-67debace85465768d5f0d72ccd0f3572-475ac-rfg8n] [592_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0010' from sub-workflow 'CallGenome'
[2026-06-05T03:28:39.205554Z] [nf-67debace85465768d5f0d72ccd0f3572-475ac-rfg8n] [592_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_003_chr4_0010] Task initiated on local node
[2026-06-05T03:28:39.235078Z] [nf-67debace85465768d5f0d72ccd0f3572-475ac-rfg8n] [592_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0010' launched from sub-workflow 'CallGenome'
[2026-06-05T03:28:39.236124Z] [nf-67debace85465768d5f0d72ccd0f3572-475ac-rfg8n] [592_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_002_chr3_0007' from sub-workflow 'CallGenome'
[2026-06-05T03:28:39.239197Z] [nf-67debace85465768d5f0d72ccd0f3572-475ac-rfg8n] [592_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_002_chr3_0007] Task initiated on local node
[2026-06-05T03:28:39.244010Z] [nf-67debace85465768d5f0d72ccd0f3572-475ac-rfg8n] [592_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_002_chr3_0006' launched from sub-workflow 'CallGenome'
[2026-06-05T03:28:39.244955Z] [nf-67debace85465768d5f0d72ccd0f3572-475ac-rfg8n] [592_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_002_chr3_0011' from sub-workflow 'CallGenome'
[2026-06-05T03:28:39.247490Z] [nf-67debace85465768d5f0d72ccd0f3572-475ac-rfg8n] [592_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_002_chr3_0011] Task initiated on local node
[2026-06-05T03:28:39.459643Z] [nf-67debace85465768d5f0d72ccd0f3572-475ac-rfg8n] [592_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_019_chr20_0001' launched from sub-workflow 'CallGenome'
[2026-06-05T03:28:39.460643Z] [nf-67debace85465768d5f0d72ccd0f3572-475ac-rfg8n] [592_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_020_chr21_0000' from sub-workflow 'CallGenome'
[2026-06-05T03:28:39.463538Z] [nf-67debace85465768d5f0d72ccd0f3572-475ac-rfg8n] [592_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_020_chr21_0000] Task initiated on local node
[2026-06-05T03:28:39.492759Z] [nf-67debace85465768d5f0d72ccd0f3572-475ac-rfg8n] [592_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_020_chr21_0000' launched from sub-workflow 'CallGenome'
[2026-06-05T03:28:39.493735Z] [nf-67debace85465768d5f0d72ccd0f3572-475ac-rfg8n] [592_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_020_chr21_0002' from sub-workflow 'CallGenome'
[2026-06-05T03:28:39.496684Z] [nf-67debace85465768d5f0d72ccd0f3572-475ac-rfg8n] [592_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_020_chr21_0002] Task initiated on local node
[2026-06-05T03:28:39.558063Z] [nf-67debace85465768d5f0d72ccd0f3572-475ac-rfg8n] [592_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_002_chr3_0007' launched from sub-workflow 'CallGenome'
[2026-06-05T03:28:39.559079Z] [nf-67debace85465768d5f0d72ccd0f3572-475ac-rfg8n] [592_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_002_chr3_0007' from sub-workflow 'CallGenome'
[2026-06-05T03:28:39.561928Z] [nf-67debace85465768d5f0d72ccd0f3572-475ac-rfg8n] [592_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_002_chr3_0007] Task initiated on local node
[2026-06-05T03:28:39.623489Z] [nf-67debace85465768d5f0d72ccd0f3572-475ac-rfg8n] [592_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_002_chr3_0007' launched from sub-workflow 'CallGenome'
[2026-06-05T03:28:39.624528Z] [nf-67debace85465768d5f0d72ccd0f3572-475ac-rfg8n] [592_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0004' from sub-workflow 'CallGenome'
[2026-06-05T03:28:39.627658Z] [nf-67debace85465768d5f0d72ccd0f3572-475ac-rfg8n] [592_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_003_chr4_0004] Task initiated on local node
[2026-06-05T03:28:39.688614Z] [nf-67debace85465768d5f0d72ccd0f3572-475ac-rfg8n] [592_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0004' launched from sub-workflow 'CallGenome'
[2026-06-05T03:28:39.689616Z] [nf-67debace85465768d5f0d72ccd0f3572-475ac-rfg8n] [592_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0004' from sub-workflow 'CallGenome'
[2026-06-05T03:28:39.692429Z] [nf-67debace85465768d5f0d72ccd0f3572-475ac-rfg8n] [592_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_003_chr4_0004] Task initiated on local node
[2026-06-05T03:28:39.721767Z] [nf-67debace85465768d5f0d72ccd0f3572-475ac-rfg8n] [592_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0004' launched from sub-workflow 'CallGenome'
[2026-06-05T03:28:39.722769Z] [nf-67debace85465768d5f0d72ccd0f3572-475ac-rfg8n] [592_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0009' from sub-workflow 'CallGenome'
[2026-06-05T03:28:39.725734Z] [nf-67debace85465768d5f0d72ccd0f3572-475ac-rfg8n] [592_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_003_chr4_0009] Task initiated on local node
[2026-06-05T03:28:39.787013Z] [nf-67debace85465768d5f0d72ccd0f3572-475ac-rfg8n] [592_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_002_chr3_0009' launched from sub-workflow 'CallGenome'
[2026-06-05T03:28:39.787093Z] [nf-67debace85465768d5f0d72ccd0f3572-475ac-rfg8n] [592_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0009' launched from sub-workflow 'CallGenome'
[2026-06-05T03:28:39.788066Z] [nf-67debace85465768d5f0d72ccd0f3572-475ac-rfg8n] [592_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_002_chr3_0016' from sub-workflow 'CallGenome'
[2026-06-05T03:28:39.788394Z] [nf-67debace85465768d5f0d72ccd0f3572-475ac-rfg8n] [592_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_019_chr20_0003' from sub-workflow 'CallGenome'
[2026-06-05T03:28:39.791666Z] [nf-67debace85465768d5f0d72ccd0f3572-475ac-rfg8n] [592_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_002_chr3_0016] Task initiated on local node
[2026-06-05T03:28:39.792654Z] [nf-67debace85465768d5f0d72ccd0f3572-475ac-rfg8n] [592_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_019_chr20_0003] Task initiated on local node
[2026-06-05T03:28:40.253794Z] [nf-67debace85465768d5f0d72ccd0f3572-475ac-rfg8n] [592_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_021_chr22_0004' launched from sub-workflow 'CallGenome'
[2026-06-05T03:28:40.254773Z] [nf-67debace85465768d5f0d72ccd0f3572-475ac-rfg8n] [592_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_002_chr3_0013' from sub-workflow 'CallGenome'
[2026-06-05T03:28:40.257740Z] [nf-67debace85465768d5f0d72ccd0f3572-475ac-rfg8n] [592_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_002_chr3_0013] Task initiated on local node
[2026-06-05T03:28:40.369150Z] [nf-67debace85465768d5f0d72ccd0f3572-475ac-rfg8n] [592_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_002_chr3_0012' launched from sub-workflow 'CallGenome'
[2026-06-05T03:28:40.369241Z] [nf-67debace85465768d5f0d72ccd0f3572-475ac-rfg8n] [592_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_021_chr22_0002' launched from sub-workflow 'CallGenome'
[2026-06-05T03:28:40.370168Z] [nf-67debace85465768d5f0d72ccd0f3572-475ac-rfg8n] [592_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_002_chr3_0012' from sub-workflow 'CallGenome'
[2026-06-05T03:28:40.370422Z] [nf-67debace85465768d5f0d72ccd0f3572-475ac-rfg8n] [592_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_021_chr22_0003' from sub-workflow 'CallGenome'
[2026-06-05T03:28:40.373439Z] [nf-67debace85465768d5f0d72ccd0f3572-475ac-rfg8n] [592_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_021_chr22_0003] Task initiated on local node
[2026-06-05T03:28:40.374335Z] [nf-67debace85465768d5f0d72ccd0f3572-475ac-rfg8n] [592_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_002_chr3_0012] Task initiated on local node
[2026-06-05T03:28:40.402625Z] [nf-67debace85465768d5f0d72ccd0f3572-475ac-rfg8n] [592_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_002_chr3_0012' launched from sub-workflow 'CallGenome'
[2026-06-05T03:28:40.403545Z] [nf-67debace85465768d5f0d72ccd0f3572-475ac-rfg8n] [592_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0014' from sub-workflow 'CallGenome'
[2026-06-05T03:28:40.406393Z] [nf-67debace85465768d5f0d72ccd0f3572-475ac-rfg8n] [592_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_003_chr4_0014] Task initiated on local node
[2026-06-05T03:28:40.467784Z] [nf-67debace85465768d5f0d72ccd0f3572-475ac-rfg8n] [592_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0014' launched from sub-workflow 'CallGenome'
[2026-06-05T03:28:40.468640Z] [nf-67debace85465768d5f0d72ccd0f3572-475ac-rfg8n] [592_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0009' from sub-workflow 'CallGenome'
[2026-06-05T03:28:40.471570Z] [nf-67debace85465768d5f0d72ccd0f3572-475ac-rfg8n] [592_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_003_chr4_0009] Task initiated on local node
[2026-06-05T03:28:40.500798Z] [nf-67debace85465768d5f0d72ccd0f3572-475ac-rfg8n] [592_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0009' launched from sub-workflow 'CallGenome'
[2026-06-05T03:28:40.500877Z] [nf-67debace85465768d5f0d72ccd0f3572-475ac-rfg8n] [592_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_002_chr3_0003' launched from sub-workflow 'CallGenome'
[2026-06-05T03:28:40.501716Z] [nf-67debace85465768d5f0d72ccd0f3572-475ac-rfg8n] [592_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0012' from sub-workflow 'CallGenome'
[2026-06-05T03:28:40.501988Z] [nf-67debace85465768d5f0d72ccd0f3572-475ac-rfg8n] [592_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_021_chr22_0001' from sub-workflow 'CallGenome'
[2026-06-05T03:28:40.504507Z] [nf-67debace85465768d5f0d72ccd0f3572-475ac-rfg8n] [592_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_003_chr4_0012] Task initiated on local node
[2026-06-05T03:28:40.505360Z] [nf-67debace85465768d5f0d72ccd0f3572-475ac-rfg8n] [592_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_021_chr22_0001] Task initiated on local node
[2026-06-05T03:28:40.534603Z] [nf-67debace85465768d5f0d72ccd0f3572-475ac-rfg8n] [592_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0012' launched from sub-workflow 'CallGenome'
[2026-06-05T03:28:40.535571Z] [nf-67debace85465768d5f0d72ccd0f3572-475ac-rfg8n] [592_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_002_chr3_0008' from sub-workflow 'CallGenome'
[2026-06-05T03:28:40.537876Z] [nf-67debace85465768d5f0d72ccd0f3572-475ac-rfg8n] [592_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_021_chr22_0001' launched from sub-workflow 'CallGenome'
[2026-06-05T03:28:40.538414Z] [nf-67debace85465768d5f0d72ccd0f3572-475ac-rfg8n] [592_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_002_chr3_0008] Task initiated on local node
[2026-06-05T03:28:40.538964Z] [nf-67debace85465768d5f0d72ccd0f3572-475ac-rfg8n] [592_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0002' from sub-workflow 'CallGenome'
[2026-06-05T03:28:40.541378Z] [nf-67debace85465768d5f0d72ccd0f3572-475ac-rfg8n] [592_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_003_chr4_0002] Task initiated on local node
[2026-06-05T03:28:40.603277Z] [nf-67debace85465768d5f0d72ccd0f3572-475ac-rfg8n] [592_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0002' launched from sub-workflow 'CallGenome'
[2026-06-05T03:28:40.604221Z] [nf-67debace85465768d5f0d72ccd0f3572-475ac-rfg8n] [592_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_019_chr20_0001' from sub-workflow 'CallGenome'
[2026-06-05T03:28:40.606812Z] [nf-67debace85465768d5f0d72ccd0f3572-475ac-rfg8n] [592_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_019_chr20_0001] Task initiated on local node
[2026-06-05T03:28:40.636240Z] [nf-67debace85465768d5f0d72ccd0f3572-475ac-rfg8n] [592_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_019_chr20_0001' launched from sub-workflow 'CallGenome'
[2026-06-05T03:28:40.637185Z] [nf-67debace85465768d5f0d72ccd0f3572-475ac-rfg8n] [592_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0007' from sub-workflow 'CallGenome'
[2026-06-05T03:28:40.639960Z] [nf-67debace85465768d5f0d72ccd0f3572-475ac-rfg8n] [592_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_003_chr4_0007] Task initiated on local node
[2026-06-05T03:28:40.669236Z] [nf-67debace85465768d5f0d72ccd0f3572-475ac-rfg8n] [592_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0007' launched from sub-workflow 'CallGenome'
[2026-06-05T03:28:40.670108Z] [nf-67debace85465768d5f0d72ccd0f3572-475ac-rfg8n] [592_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_002_chr3_0009' from sub-workflow 'CallGenome'
[2026-06-05T03:28:40.672780Z] [nf-67debace85465768d5f0d72ccd0f3572-475ac-rfg8n] [592_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_002_chr3_0009] Task initiated on local node
[2026-06-05T03:28:40.734477Z] [nf-67debace85465768d5f0d72ccd0f3572-475ac-rfg8n] [592_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_002_chr3_0009' launched from sub-workflow 'CallGenome'
[2026-06-05T03:28:40.735486Z] [nf-67debace85465768d5f0d72ccd0f3572-475ac-rfg8n] [592_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0001' from sub-workflow 'CallGenome'
[2026-06-05T03:28:40.738372Z] [nf-67debace85465768d5f0d72ccd0f3572-475ac-rfg8n] [592_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_003_chr4_0001] Task initiated on local node
[2026-06-05T03:28:41.100748Z] [nf-67debace85465768d5f0d72ccd0f3572-475ac-rfg8n] [592_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_002_chr3_0011' launched from sub-workflow 'CallGenome'
[2026-06-05T03:28:41.101665Z] [nf-67debace85465768d5f0d72ccd0f3572-475ac-rfg8n] [592_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_002_chr3_0011' from sub-workflow 'CallGenome'
[2026-06-05T03:28:41.104349Z] [nf-67debace85465768d5f0d72ccd0f3572-475ac-rfg8n] [592_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_002_chr3_0011] Task initiated on local node
[2026-06-05T03:28:41.134439Z] [nf-67debace85465768d5f0d72ccd0f3572-475ac-rfg8n] [592_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_002_chr3_0011' launched from sub-workflow 'CallGenome'
[2026-06-05T03:28:41.135362Z] [nf-67debace85465768d5f0d72ccd0f3572-475ac-rfg8n] [592_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_002_chr3_0003' from sub-workflow 'CallGenome'
[2026-06-05T03:28:41.138531Z] [nf-67debace85465768d5f0d72ccd0f3572-475ac-rfg8n] [592_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_002_chr3_0003] Task initiated on local node
[2026-06-05T03:28:41.200356Z] [nf-67debace85465768d5f0d72ccd0f3572-475ac-rfg8n] [592_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_002_chr3_0003' launched from sub-workflow 'CallGenome'
[2026-06-05T03:28:41.201336Z] [nf-67debace85465768d5f0d72ccd0f3572-475ac-rfg8n] [592_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_002_chr3_0002' from sub-workflow 'CallGenome'
[2026-06-05T03:28:41.204238Z] [nf-67debace85465768d5f0d72ccd0f3572-475ac-rfg8n] [592_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_002_chr3_0002] Task initiated on local node
[2026-06-05T03:28:41.265652Z] [nf-67debace85465768d5f0d72ccd0f3572-475ac-rfg8n] [592_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_002_chr3_0013' launched from sub-workflow 'CallGenome'
[2026-06-05T03:28:41.266573Z] [nf-67debace85465768d5f0d72ccd0f3572-475ac-rfg8n] [592_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_002_chr3_0013' from sub-workflow 'CallGenome'
[2026-06-05T03:28:41.269275Z] [nf-67debace85465768d5f0d72ccd0f3572-475ac-rfg8n] [592_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_002_chr3_0013] Task initiated on local node
[2026-06-05T03:28:41.298590Z] [nf-67debace85465768d5f0d72ccd0f3572-475ac-rfg8n] [592_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_002_chr3_0013' launched from sub-workflow 'CallGenome'
[2026-06-05T03:28:41.299551Z] [nf-67debace85465768d5f0d72ccd0f3572-475ac-rfg8n] [592_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_019_chr20_0005' from sub-workflow 'CallGenome'
[2026-06-05T03:28:41.302210Z] [nf-67debace85465768d5f0d72ccd0f3572-475ac-rfg8n] [592_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_019_chr20_0005] Task initiated on local node
[2026-06-05T03:28:41.414088Z] [nf-67debace85465768d5f0d72ccd0f3572-475ac-rfg8n] [592_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_002_chr3_0016' launched from sub-workflow 'CallGenome'
[2026-06-05T03:28:41.415041Z] [nf-67debace85465768d5f0d72ccd0f3572-475ac-rfg8n] [592_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_002_chr3_0006' from sub-workflow 'CallGenome'
[2026-06-05T03:28:41.418087Z] [nf-67debace85465768d5f0d72ccd0f3572-475ac-rfg8n] [592_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_002_chr3_0006] Task initiated on local node
[2026-06-05T03:28:41.447614Z] [nf-67debace85465768d5f0d72ccd0f3572-475ac-rfg8n] [592_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0001' launched from sub-workflow 'CallGenome'
[2026-06-05T03:28:41.448501Z] [nf-67debace85465768d5f0d72ccd0f3572-475ac-rfg8n] [592_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_019_chr20_0000' from sub-workflow 'CallGenome'
[2026-06-05T03:28:41.451410Z] [nf-67debace85465768d5f0d72ccd0f3572-475ac-rfg8n] [592_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_019_chr20_0000] Task initiated on local node
[2026-06-05T03:28:41.452204Z] [nf-67debace85465768d5f0d72ccd0f3572-475ac-rfg8n] [592_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_002_chr3_0006' launched from sub-workflow 'CallGenome'
[2026-06-05T03:28:41.452874Z] [nf-67debace85465768d5f0d72ccd0f3572-475ac-rfg8n] [592_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_021_chr22_0000' from sub-workflow 'CallGenome'
[2026-06-05T03:28:41.455920Z] [nf-67debace85465768d5f0d72ccd0f3572-475ac-rfg8n] [592_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_021_chr22_0000] Task initiated on local node
[2026-06-05T03:28:41.517237Z] [nf-67debace85465768d5f0d72ccd0f3572-475ac-rfg8n] [592_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_002_chr3_0008' launched from sub-workflow 'CallGenome'
[2026-06-05T03:28:41.517341Z] [nf-67debace85465768d5f0d72ccd0f3572-475ac-rfg8n] [592_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_019_chr20_0000' launched from sub-workflow 'CallGenome'
[2026-06-05T03:28:41.517367Z] [nf-67debace85465768d5f0d72ccd0f3572-475ac-rfg8n] [592_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_021_chr22_0000' launched from sub-workflow 'CallGenome'
[2026-06-05T03:28:41.518188Z] [nf-67debace85465768d5f0d72ccd0f3572-475ac-rfg8n] [592_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_021_chr22_0000' from sub-workflow 'CallGenome'
[2026-06-05T03:28:41.518633Z] [nf-67debace85465768d5f0d72ccd0f3572-475ac-rfg8n] [592_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_002_chr3_0010' from sub-workflow 'CallGenome'
[2026-06-05T03:28:41.519302Z] [nf-67debace85465768d5f0d72ccd0f3572-475ac-rfg8n] [592_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_019_chr20_0000' from sub-workflow 'CallGenome'
[2026-06-05T03:28:41.522858Z] [nf-67debace85465768d5f0d72ccd0f3572-475ac-rfg8n] [592_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_021_chr22_0000] Task initiated on local node
[2026-06-05T03:28:41.524364Z] [nf-67debace85465768d5f0d72ccd0f3572-475ac-rfg8n] [592_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_019_chr20_0000] Task initiated on local node
[2026-06-05T03:28:41.525393Z] [nf-67debace85465768d5f0d72ccd0f3572-475ac-rfg8n] [592_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_002_chr3_0010] Task initiated on local node
[2026-06-05T03:28:41.552686Z] [nf-67debace85465768d5f0d72ccd0f3572-475ac-rfg8n] [592_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_021_chr22_0000' launched from sub-workflow 'CallGenome'
[2026-06-05T03:28:41.553897Z] [nf-67debace85465768d5f0d72ccd0f3572-475ac-rfg8n] [592_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0001' from sub-workflow 'CallGenome'
[2026-06-05T03:28:41.554142Z] [nf-67debace85465768d5f0d72ccd0f3572-475ac-rfg8n] [592_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_019_chr20_0000' launched from sub-workflow 'CallGenome'
[2026-06-05T03:28:41.556394Z] [nf-67debace85465768d5f0d72ccd0f3572-475ac-rfg8n] [592_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_003_chr4_0001] Task initiated on local node
[2026-06-05T03:28:41.556527Z] [nf-67debace85465768d5f0d72ccd0f3572-475ac-rfg8n] [592_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_002_chr3_0001' from sub-workflow 'CallGenome'
[2026-06-05T03:28:41.559086Z] [nf-67debace85465768d5f0d72ccd0f3572-475ac-rfg8n] [592_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_002_chr3_0001] Task initiated on local node
[2026-06-05T03:28:41.588639Z] [nf-67debace85465768d5f0d72ccd0f3572-475ac-rfg8n] [592_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0001' launched from sub-workflow 'CallGenome'
[2026-06-05T03:28:41.589503Z] [nf-67debace85465768d5f0d72ccd0f3572-475ac-rfg8n] [592_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0003' from sub-workflow 'CallGenome'
[2026-06-05T03:28:41.592114Z] [nf-67debace85465768d5f0d72ccd0f3572-475ac-rfg8n] [592_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_003_chr4_0003] Task initiated on local node
[2026-06-05T03:28:41.653696Z] [nf-67debace85465768d5f0d72ccd0f3572-475ac-rfg8n] [592_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0003' launched from sub-workflow 'CallGenome'
[2026-06-05T03:28:41.654543Z] [nf-67debace85465768d5f0d72ccd0f3572-475ac-rfg8n] [592_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_002_chr3_0016' from sub-workflow 'CallGenome'
[2026-06-05T03:28:41.657485Z] [nf-67debace85465768d5f0d72ccd0f3572-475ac-rfg8n] [592_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_002_chr3_0016] Task initiated on local node
[2026-06-05T03:28:41.686715Z] [nf-67debace85465768d5f0d72ccd0f3572-475ac-rfg8n] [592_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_002_chr3_0016' launched from sub-workflow 'CallGenome'
[2026-06-05T03:28:41.687507Z] [nf-67debace85465768d5f0d72ccd0f3572-475ac-rfg8n] [592_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_002_chr3_0014' from sub-workflow 'CallGenome'
[2026-06-05T03:28:41.690408Z] [nf-67debace85465768d5f0d72ccd0f3572-475ac-rfg8n] [592_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_002_chr3_0014] Task initiated on local node
[2026-06-05T03:28:42.002534Z] [nf-67debace85465768d5f0d72ccd0f3572-475ac-rfg8n] [592_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_019_chr20_0003' launched from sub-workflow 'CallGenome'
[2026-06-05T03:28:42.003368Z] [nf-67debace85465768d5f0d72ccd0f3572-475ac-rfg8n] [592_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_021_chr22_0004' from sub-workflow 'CallGenome'
[2026-06-05T03:28:42.005851Z] [nf-67debace85465768d5f0d72ccd0f3572-475ac-rfg8n] [592_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_021_chr22_0004] Task initiated on local node
[2026-06-05T03:28:42.067588Z] [nf-67debace85465768d5f0d72ccd0f3572-475ac-rfg8n] [592_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_021_chr22_0004' launched from sub-workflow 'CallGenome'
[2026-06-05T03:28:42.068380Z] [nf-67debace85465768d5f0d72ccd0f3572-475ac-rfg8n] [592_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_002_chr3_0008' from sub-workflow 'CallGenome'
[2026-06-05T03:28:42.071404Z] [nf-67debace85465768d5f0d72ccd0f3572-475ac-rfg8n] [592_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_002_chr3_0008] Task initiated on local node
[2026-06-05T03:28:42.132648Z] [nf-67debace85465768d5f0d72ccd0f3572-475ac-rfg8n] [592_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_002_chr3_0008' launched from sub-workflow 'CallGenome'
[2026-06-05T03:28:42.133481Z] [nf-67debace85465768d5f0d72ccd0f3572-475ac-rfg8n] [592_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_020_chr21_0003' from sub-workflow 'CallGenome'
[2026-06-05T03:28:42.136610Z] [nf-67debace85465768d5f0d72ccd0f3572-475ac-rfg8n] [592_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_020_chr21_0003] Task initiated on local node
[2026-06-05T03:28:42.298425Z] [nf-67debace85465768d5f0d72ccd0f3572-475ac-rfg8n] [592_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_021_chr22_0003' launched from sub-workflow 'CallGenome'
[2026-06-05T03:28:42.299232Z] [nf-67debace85465768d5f0d72ccd0f3572-475ac-rfg8n] [592_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_021_chr22_0003' from sub-workflow 'CallGenome'
[2026-06-05T03:28:42.301910Z] [nf-67debace85465768d5f0d72ccd0f3572-475ac-rfg8n] [592_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_021_chr22_0003] Task initiated on local node
[2026-06-05T03:28:42.363592Z] [nf-67debace85465768d5f0d72ccd0f3572-475ac-rfg8n] [592_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_021_chr22_0003' launched from sub-workflow 'CallGenome'
[2026-06-05T03:28:42.364409Z] [nf-67debace85465768d5f0d72ccd0f3572-475ac-rfg8n] [592_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_002_chr3_0005' from sub-workflow 'CallGenome'
[2026-06-05T03:28:42.367544Z] [nf-67debace85465768d5f0d72ccd0f3572-475ac-rfg8n] [592_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_002_chr3_0005] Task initiated on local node
[2026-06-05T03:28:42.428916Z] [nf-67debace85465768d5f0d72ccd0f3572-475ac-rfg8n] [592_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_002_chr3_0002' launched from sub-workflow 'CallGenome'
[2026-06-05T03:28:42.429712Z] [nf-67debace85465768d5f0d72ccd0f3572-475ac-rfg8n] [592_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_002_chr3_0000' from sub-workflow 'CallGenome'
[2026-06-05T03:28:42.432697Z] [nf-67debace85465768d5f0d72ccd0f3572-475ac-rfg8n] [592_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_002_chr3_0000] Task initiated on local node
[2026-06-05T03:28:42.644541Z] [nf-67debace85465768d5f0d72ccd0f3572-475ac-rfg8n] [592_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_019_chr20_0005' launched from sub-workflow 'CallGenome'
[2026-06-05T03:28:42.645377Z] [nf-67debace85465768d5f0d72ccd0f3572-475ac-rfg8n] [592_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_019_chr20_0003' from sub-workflow 'CallGenome'
[2026-06-05T03:28:42.648409Z] [nf-67debace85465768d5f0d72ccd0f3572-475ac-rfg8n] [592_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_019_chr20_0003] Task initiated on local node
[2026-06-05T03:28:42.709559Z] [nf-67debace85465768d5f0d72ccd0f3572-475ac-rfg8n] [592_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_019_chr20_0003' launched from sub-workflow 'CallGenome'
[2026-06-05T03:28:42.710353Z] [nf-67debace85465768d5f0d72ccd0f3572-475ac-rfg8n] [592_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0014' from sub-workflow 'CallGenome'
[2026-06-05T03:28:42.713180Z] [nf-67debace85465768d5f0d72ccd0f3572-475ac-rfg8n] [592_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_003_chr4_0014] Task initiated on local node
[2026-06-05T03:28:42.774505Z] [nf-67debace85465768d5f0d72ccd0f3572-475ac-rfg8n] [592_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_002_chr3_0014' launched from sub-workflow 'CallGenome'
[2026-06-05T03:28:42.774604Z] [nf-67debace85465768d5f0d72ccd0f3572-475ac-rfg8n] [592_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0014' launched from sub-workflow 'CallGenome'
[2026-06-05T03:28:42.775397Z] [nf-67debace85465768d5f0d72ccd0f3572-475ac-rfg8n] [592_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_020_chr21_0001' from sub-workflow 'CallGenome'
[2026-06-05T03:28:42.776059Z] [nf-67debace85465768d5f0d72ccd0f3572-475ac-rfg8n] [592_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_021_chr22_0002' from sub-workflow 'CallGenome'
[2026-06-05T03:28:42.778998Z] [nf-67debace85465768d5f0d72ccd0f3572-475ac-rfg8n] [592_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_020_chr21_0001] Task initiated on local node
[2026-06-05T03:28:43.041323Z] [nf-67debace85465768d5f0d72ccd0f3572-475ac-rfg8n] [592_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_002_chr3_0001' launched from sub-workflow 'CallGenome'
[2026-06-05T03:28:43.042101Z] [nf-67debace85465768d5f0d72ccd0f3572-475ac-rfg8n] [592_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0003' from sub-workflow 'CallGenome'
[2026-06-05T03:28:43.044727Z] [nf-67debace85465768d5f0d72ccd0f3572-475ac-rfg8n] [592_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_003_chr4_0003] Task initiated on local node
[2026-06-05T03:28:43.106141Z] [nf-67debace85465768d5f0d72ccd0f3572-475ac-rfg8n] [592_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0003' launched from sub-workflow 'CallGenome'
[2026-06-05T03:28:43.106903Z] [nf-67debace85465768d5f0d72ccd0f3572-475ac-rfg8n] [592_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_002_chr3_0001' from sub-workflow 'CallGenome'
[2026-06-05T03:28:43.109815Z] [nf-67debace85465768d5f0d72ccd0f3572-475ac-rfg8n] [592_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_002_chr3_0001] Task initiated on local node
[2026-06-05T03:28:43.171502Z] [nf-67debace85465768d5f0d72ccd0f3572-475ac-rfg8n] [592_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_002_chr3_0001' launched from sub-workflow 'CallGenome'
[2026-06-05T03:28:43.172299Z] [nf-67debace85465768d5f0d72ccd0f3572-475ac-rfg8n] [592_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0000' from sub-workflow 'CallGenome'
[2026-06-05T03:28:43.174878Z] [nf-67debace85465768d5f0d72ccd0f3572-475ac-rfg8n] [592_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_003_chr4_0000] Task initiated on local node
[2026-06-05T03:28:43.236423Z] [nf-67debace85465768d5f0d72ccd0f3572-475ac-rfg8n] [592_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_020_chr21_0002' launched from sub-workflow 'CallGenome'
[2026-06-05T03:28:43.237169Z] [nf-67debace85465768d5f0d72ccd0f3572-475ac-rfg8n] [592_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_020_chr21_0002' from sub-workflow 'CallGenome'
[2026-06-05T03:28:43.239914Z] [nf-67debace85465768d5f0d72ccd0f3572-475ac-rfg8n] [592_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_020_chr21_0002] Task initiated on local node
[2026-06-05T03:28:43.269210Z] [nf-67debace85465768d5f0d72ccd0f3572-475ac-rfg8n] [592_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_020_chr21_0002' launched from sub-workflow 'CallGenome'
[2026-06-05T03:28:43.269965Z] [nf-67debace85465768d5f0d72ccd0f3572-475ac-rfg8n] [592_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_002_chr3_0014' from sub-workflow 'CallGenome'
[2026-06-05T03:28:43.272520Z] [nf-67debace85465768d5f0d72ccd0f3572-475ac-rfg8n] [592_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_002_chr3_0014] Task initiated on local node
[2026-06-05T03:28:43.335428Z] [nf-67debace85465768d5f0d72ccd0f3572-475ac-rfg8n] [592_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_002_chr3_0014' launched from sub-workflow 'CallGenome'
[2026-06-05T03:28:43.337637Z] [nf-67debace85465768d5f0d72ccd0f3572-475ac-rfg8n] [592_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_019_chr20_0002' from sub-workflow 'CallGenome'
[2026-06-05T03:28:43.340603Z] [nf-67debace85465768d5f0d72ccd0f3572-475ac-rfg8n] [592_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_019_chr20_0002] Task initiated on local node
[2026-06-05T03:28:43.552474Z] [nf-67debace85465768d5f0d72ccd0f3572-475ac-rfg8n] [592_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_002_chr3_0005' launched from sub-workflow 'CallGenome'
[2026-06-05T03:28:43.553311Z] [nf-67debace85465768d5f0d72ccd0f3572-475ac-rfg8n] [592_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_002_chr3_0005' from sub-workflow 'CallGenome'
[2026-06-05T03:28:43.556427Z] [nf-67debace85465768d5f0d72ccd0f3572-475ac-rfg8n] [592_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_002_chr3_0005] Task initiated on local node
[2026-06-05T03:28:43.617855Z] [nf-67debace85465768d5f0d72ccd0f3572-475ac-rfg8n] [592_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_002_chr3_0005' launched from sub-workflow 'CallGenome'
[2026-06-05T03:28:43.617951Z] [nf-67debace85465768d5f0d72ccd0f3572-475ac-rfg8n] [592_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_002_chr3_0000' launched from sub-workflow 'CallGenome'
[2026-06-05T03:28:43.618599Z] [nf-67debace85465768d5f0d72ccd0f3572-475ac-rfg8n] [592_1] [TaskManager] Launching command task: 'CallGenome+fixVcfHeader_chromId_002_chr3_0000' from sub-workflow 'CallGenome'
[2026-06-05T03:28:43.618914Z] [nf-67debace85465768d5f0d72ccd0f3572-475ac-rfg8n] [592_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_019_chr20_0004' from sub-workflow 'CallGenome'
[2026-06-05T03:28:43.621985Z] [nf-67debace85465768d5f0d72ccd0f3572-475ac-rfg8n] [592_1] [TaskRunner:CallGenome+fixVcfHeader_chromId_002_chr3_0000] Task initiated on local node
[2026-06-05T03:28:43.623005Z] [nf-67debace85465768d5f0d72ccd0f3572-475ac-rfg8n] [592_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_019_chr20_0004] Task initiated on local node
[2026-06-05T03:28:43.667581Z] [nf-67debace85465768d5f0d72ccd0f3572-475ac-rfg8n] [592_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_021_chr22_0002] Task initiated on local node
[2026-06-05T03:28:43.683373Z] [nf-67debace85465768d5f0d72ccd0f3572-475ac-rfg8n] [592_1] [TaskManager] Completed command task: 'CallGenome+fixVcfHeader_chromId_002_chr3_0000' launched from sub-workflow 'CallGenome'
[2026-06-05T03:28:43.683460Z] [nf-67debace85465768d5f0d72ccd0f3572-475ac-rfg8n] [592_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_020_chr21_0001' launched from sub-workflow 'CallGenome'
[2026-06-05T03:28:43.683494Z] [nf-67debace85465768d5f0d72ccd0f3572-475ac-rfg8n] [592_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_021_chr22_0002' launched from sub-workflow 'CallGenome'
[2026-06-05T03:28:43.684117Z] [nf-67debace85465768d5f0d72ccd0f3572-475ac-rfg8n] [592_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_002_chr3_0000' from sub-workflow 'CallGenome'
[2026-06-05T03:28:43.684385Z] [nf-67debace85465768d5f0d72ccd0f3572-475ac-rfg8n] [592_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0008' from sub-workflow 'CallGenome'
[2026-06-05T03:28:43.686283Z] [nf-67debace85465768d5f0d72ccd0f3572-475ac-rfg8n] [592_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_002_chr3_0015' from sub-workflow 'CallGenome'
[2026-06-05T03:28:43.688534Z] [nf-67debace85465768d5f0d72ccd0f3572-475ac-rfg8n] [592_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_002_chr3_0000] Task initiated on local node
[2026-06-05T03:28:43.690110Z] [nf-67debace85465768d5f0d72ccd0f3572-475ac-rfg8n] [592_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_003_chr4_0008] Task initiated on local node
[2026-06-05T03:28:43.690906Z] [nf-67debace85465768d5f0d72ccd0f3572-475ac-rfg8n] [592_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_002_chr3_0015] Task initiated on local node
[2026-06-05T03:28:43.720368Z] [nf-67debace85465768d5f0d72ccd0f3572-475ac-rfg8n] [592_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0008' launched from sub-workflow 'CallGenome'
[2026-06-05T03:28:43.721191Z] [nf-67debace85465768d5f0d72ccd0f3572-475ac-rfg8n] [592_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_002_chr3_0004' from sub-workflow 'CallGenome'
[2026-06-05T03:28:43.721444Z] [nf-67debace85465768d5f0d72ccd0f3572-475ac-rfg8n] [592_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_002_chr3_0000' launched from sub-workflow 'CallGenome'
[2026-06-05T03:28:43.723962Z] [nf-67debace85465768d5f0d72ccd0f3572-475ac-rfg8n] [592_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0011' from sub-workflow 'CallGenome'
[2026-06-05T03:28:43.724450Z] [nf-67debace85465768d5f0d72ccd0f3572-475ac-rfg8n] [592_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_002_chr3_0004] Task initiated on local node
[2026-06-05T03:28:43.726547Z] [nf-67debace85465768d5f0d72ccd0f3572-475ac-rfg8n] [592_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_003_chr4_0011] Task initiated on local node
[2026-06-05T03:28:43.788250Z] [nf-67debace85465768d5f0d72ccd0f3572-475ac-rfg8n] [592_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_002_chr3_0010' launched from sub-workflow 'CallGenome'
[2026-06-05T03:28:43.788358Z] [nf-67debace85465768d5f0d72ccd0f3572-475ac-rfg8n] [592_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0011' launched from sub-workflow 'CallGenome'
[2026-06-05T03:28:43.788963Z] [nf-67debace85465768d5f0d72ccd0f3572-475ac-rfg8n] [592_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_002_chr3_0010' from sub-workflow 'CallGenome'
[2026-06-05T03:28:43.789373Z] [nf-67debace85465768d5f0d72ccd0f3572-475ac-rfg8n] [592_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0011' from sub-workflow 'CallGenome'
[2026-06-05T03:28:43.792488Z] [nf-67debace85465768d5f0d72ccd0f3572-475ac-rfg8n] [592_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_003_chr4_0011] Task initiated on local node
[2026-06-05T03:28:43.793512Z] [nf-67debace85465768d5f0d72ccd0f3572-475ac-rfg8n] [592_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_002_chr3_0010] Task initiated on local node
[2026-06-05T03:28:43.823259Z] [nf-67debace85465768d5f0d72ccd0f3572-475ac-rfg8n] [592_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_002_chr3_0010' launched from sub-workflow 'CallGenome'
[2026-06-05T03:28:43.823931Z] [nf-67debace85465768d5f0d72ccd0f3572-475ac-rfg8n] [592_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0015' from sub-workflow 'CallGenome'
[2026-06-05T03:28:43.827001Z] [nf-67debace85465768d5f0d72ccd0f3572-475ac-rfg8n] [592_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_003_chr4_0015] Task initiated on local node
[2026-06-05T03:28:43.831660Z] [nf-67debace85465768d5f0d72ccd0f3572-475ac-rfg8n] [592_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0011' launched from sub-workflow 'CallGenome'
[2026-06-05T03:28:43.832252Z] [nf-67debace85465768d5f0d72ccd0f3572-475ac-rfg8n] [592_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_002_chr3_0002' from sub-workflow 'CallGenome'
[2026-06-05T03:28:43.834690Z] [nf-67debace85465768d5f0d72ccd0f3572-475ac-rfg8n] [592_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_002_chr3_0002] Task initiated on local node
[2026-06-05T03:28:43.896418Z] [nf-67debace85465768d5f0d72ccd0f3572-475ac-rfg8n] [592_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_002_chr3_0002' launched from sub-workflow 'CallGenome'
[2026-06-05T03:28:43.896521Z] [nf-67debace85465768d5f0d72ccd0f3572-475ac-rfg8n] [592_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0015' launched from sub-workflow 'CallGenome'
[2026-06-05T03:28:43.897099Z] [nf-67debace85465768d5f0d72ccd0f3572-475ac-rfg8n] [592_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0015' from sub-workflow 'CallGenome'
[2026-06-05T03:28:43.897484Z] [nf-67debace85465768d5f0d72ccd0f3572-475ac-rfg8n] [592_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_019_chr20_0005' from sub-workflow 'CallGenome'
[2026-06-05T03:28:43.900277Z] [nf-67debace85465768d5f0d72ccd0f3572-475ac-rfg8n] [592_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_019_chr20_0005] Task initiated on local node
[2026-06-05T03:28:43.901272Z] [nf-67debace85465768d5f0d72ccd0f3572-475ac-rfg8n] [592_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_003_chr4_0015] Task initiated on local node
[2026-06-05T03:28:43.929576Z] [nf-67debace85465768d5f0d72ccd0f3572-475ac-rfg8n] [592_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0015' launched from sub-workflow 'CallGenome'
[2026-06-05T03:28:43.929654Z] [nf-67debace85465768d5f0d72ccd0f3572-475ac-rfg8n] [592_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_019_chr20_0005' launched from sub-workflow 'CallGenome'
[2026-06-05T03:28:43.930258Z] [nf-67debace85465768d5f0d72ccd0f3572-475ac-rfg8n] [592_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0006' from sub-workflow 'CallGenome'
[2026-06-05T03:28:43.930587Z] [nf-67debace85465768d5f0d72ccd0f3572-475ac-rfg8n] [592_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_020_chr21_0001' from sub-workflow 'CallGenome'
[2026-06-05T03:28:43.933480Z] [nf-67debace85465768d5f0d72ccd0f3572-475ac-rfg8n] [592_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_020_chr21_0001] Task initiated on local node
[2026-06-05T03:28:43.934654Z] [nf-67debace85465768d5f0d72ccd0f3572-475ac-rfg8n] [592_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_003_chr4_0006] Task initiated on local node
[2026-06-05T03:28:43.995010Z] [nf-67debace85465768d5f0d72ccd0f3572-475ac-rfg8n] [592_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0006' launched from sub-workflow 'CallGenome'
[2026-06-05T03:28:43.995092Z] [nf-67debace85465768d5f0d72ccd0f3572-475ac-rfg8n] [592_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_020_chr21_0001' launched from sub-workflow 'CallGenome'
[2026-06-05T03:28:43.995718Z] [nf-67debace85465768d5f0d72ccd0f3572-475ac-rfg8n] [592_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0013' from sub-workflow 'CallGenome'
[2026-06-05T03:28:43.996169Z] [nf-67debace85465768d5f0d72ccd0f3572-475ac-rfg8n] [592_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0006' from sub-workflow 'CallGenome'
[2026-06-05T03:28:43.999179Z] [nf-67debace85465768d5f0d72ccd0f3572-475ac-rfg8n] [592_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_003_chr4_0006] Task initiated on local node
[2026-06-05T03:28:44.000191Z] [nf-67debace85465768d5f0d72ccd0f3572-475ac-rfg8n] [592_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_003_chr4_0013] Task initiated on local node
[2026-06-05T03:28:44.028447Z] [nf-67debace85465768d5f0d72ccd0f3572-475ac-rfg8n] [592_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0006' launched from sub-workflow 'CallGenome'
[2026-06-05T03:28:44.060580Z] [nf-67debace85465768d5f0d72ccd0f3572-475ac-rfg8n] [592_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0013' launched from sub-workflow 'CallGenome'
[2026-06-05T03:28:44.061150Z] [nf-67debace85465768d5f0d72ccd0f3572-475ac-rfg8n] [592_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0013' from sub-workflow 'CallGenome'
[2026-06-05T03:28:44.063731Z] [nf-67debace85465768d5f0d72ccd0f3572-475ac-rfg8n] [592_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_003_chr4_0013] Task initiated on local node
[2026-06-05T03:28:44.069201Z] [nf-67debace85465768d5f0d72ccd0f3572-475ac-rfg8n] [592_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_019_chr20_0002' launched from sub-workflow 'CallGenome'
[2026-06-05T03:28:44.069759Z] [nf-67debace85465768d5f0d72ccd0f3572-475ac-rfg8n] [592_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_019_chr20_0002' from sub-workflow 'CallGenome'
[2026-06-05T03:28:44.072443Z] [nf-67debace85465768d5f0d72ccd0f3572-475ac-rfg8n] [592_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_019_chr20_0002] Task initiated on local node
[2026-06-05T03:28:44.101775Z] [nf-67debace85465768d5f0d72ccd0f3572-475ac-rfg8n] [592_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0013' launched from sub-workflow 'CallGenome'
[2026-06-05T03:28:44.101863Z] [nf-67debace85465768d5f0d72ccd0f3572-475ac-rfg8n] [592_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_019_chr20_0002' launched from sub-workflow 'CallGenome'
[2026-06-05T03:28:45.219405Z] [nf-67debace85465768d5f0d72ccd0f3572-475ac-rfg8n] [592_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_002_chr3_0015' launched from sub-workflow 'CallGenome'
[2026-06-05T03:28:45.219944Z] [nf-67debace85465768d5f0d72ccd0f3572-475ac-rfg8n] [592_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_002_chr3_0015' from sub-workflow 'CallGenome'
[2026-06-05T03:28:45.222899Z] [nf-67debace85465768d5f0d72ccd0f3572-475ac-rfg8n] [592_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_002_chr3_0015] Task initiated on local node
[2026-06-05T03:28:45.252201Z] [nf-67debace85465768d5f0d72ccd0f3572-475ac-rfg8n] [592_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_002_chr3_0015' launched from sub-workflow 'CallGenome'
[2026-06-05T03:28:45.416814Z] [nf-67debace85465768d5f0d72ccd0f3572-475ac-rfg8n] [592_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0000' launched from sub-workflow 'CallGenome'
[2026-06-05T03:28:45.416906Z] [nf-67debace85465768d5f0d72ccd0f3572-475ac-rfg8n] [592_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_019_chr20_0004' launched from sub-workflow 'CallGenome'
[2026-06-05T03:28:45.417405Z] [nf-67debace85465768d5f0d72ccd0f3572-475ac-rfg8n] [592_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_019_chr20_0004' from sub-workflow 'CallGenome'
[2026-06-05T03:28:45.417732Z] [nf-67debace85465768d5f0d72ccd0f3572-475ac-rfg8n] [592_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0000' from sub-workflow 'CallGenome'
[2026-06-05T03:28:45.420842Z] [nf-67debace85465768d5f0d72ccd0f3572-475ac-rfg8n] [592_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_019_chr20_0004] Task initiated on local node
[2026-06-05T03:28:45.451550Z] [nf-67debace85465768d5f0d72ccd0f3572-475ac-rfg8n] [592_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_003_chr4_0000] Task initiated on local node
[2026-06-05T03:28:45.482932Z] [nf-67debace85465768d5f0d72ccd0f3572-475ac-rfg8n] [592_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0000' launched from sub-workflow 'CallGenome'
[2026-06-05T03:28:45.483040Z] [nf-67debace85465768d5f0d72ccd0f3572-475ac-rfg8n] [592_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_019_chr20_0004' launched from sub-workflow 'CallGenome'
[2026-06-05T03:28:46.500113Z] [nf-67debace85465768d5f0d72ccd0f3572-475ac-rfg8n] [592_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_002_chr3_0004' launched from sub-workflow 'CallGenome'
[2026-06-05T03:28:46.500685Z] [nf-67debace85465768d5f0d72ccd0f3572-475ac-rfg8n] [592_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_002_chr3_0004' from sub-workflow 'CallGenome'
[2026-06-05T03:28:46.503208Z] [nf-67debace85465768d5f0d72ccd0f3572-475ac-rfg8n] [592_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_002_chr3_0004] Task initiated on local node
[2026-06-05T03:28:46.564877Z] [nf-67debace85465768d5f0d72ccd0f3572-475ac-rfg8n] [592_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_002_chr3_0004' launched from sub-workflow 'CallGenome'
[2026-06-05T03:28:50.889236Z] [nf-67debace85465768d5f0d72ccd0f3572-475ac-rfg8n] [592_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_020_chr21_0003' launched from sub-workflow 'CallGenome'
[2026-06-05T03:28:50.889743Z] [nf-67debace85465768d5f0d72ccd0f3572-475ac-rfg8n] [592_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_020_chr21_0003' from sub-workflow 'CallGenome'
[2026-06-05T03:28:50.892301Z] [nf-67debace85465768d5f0d72ccd0f3572-475ac-rfg8n] [592_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_020_chr21_0003] Task initiated on local node
[2026-06-05T03:28:50.921790Z] [nf-67debace85465768d5f0d72ccd0f3572-475ac-rfg8n] [592_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_020_chr21_0003' launched from sub-workflow 'CallGenome'
[2026-06-05T03:28:50.922059Z] [nf-67debace85465768d5f0d72ccd0f3572-475ac-rfg8n] [592_1] [TaskManager] Completed command task: 'CallGenome+completedAllGenomeSegments' launched from sub-workflow 'CallGenome'
[2026-06-05T03:28:50.922179Z] [nf-67debace85465768d5f0d72ccd0f3572-475ac-rfg8n] [592_1] [TaskManager] Launching command task: 'CallGenome+SNV_concat_vcf' from sub-workflow 'CallGenome'
[2026-06-05T03:28:50.922402Z] [nf-67debace85465768d5f0d72ccd0f3572-475ac-rfg8n] [592_1] [TaskManager] Launching command task: 'CallGenome+mergeRunStats' from sub-workflow 'CallGenome'
[2026-06-05T03:28:50.922980Z] [nf-67debace85465768d5f0d72ccd0f3572-475ac-rfg8n] [592_1] [TaskManager] Launching command task: 'CallGenome+Indel_concat_vcf' from sub-workflow 'CallGenome'
[2026-06-05T03:28:50.926603Z] [nf-67debace85465768d5f0d72ccd0f3572-475ac-rfg8n] [592_1] [TaskRunner:CallGenome+SNV_concat_vcf] Task initiated on local node
[2026-06-05T03:28:50.928136Z] [nf-67debace85465768d5f0d72ccd0f3572-475ac-rfg8n] [592_1] [TaskRunner:CallGenome+Indel_concat_vcf] Task initiated on local node
[2026-06-05T03:28:50.929002Z] [nf-67debace85465768d5f0d72ccd0f3572-475ac-rfg8n] [592_1] [TaskRunner:CallGenome+mergeRunStats] Task initiated on local node
[2026-06-05T03:28:50.955334Z] [nf-67debace85465768d5f0d72ccd0f3572-475ac-rfg8n] [592_1] [TaskManager] Completed command task: 'CallGenome+SNV_concat_vcf' launched from sub-workflow 'CallGenome'
[2026-06-05T03:28:50.955402Z] [nf-67debace85465768d5f0d72ccd0f3572-475ac-rfg8n] [592_1] [TaskManager] Completed command task: 'CallGenome+mergeRunStats' launched from sub-workflow 'CallGenome'
[2026-06-05T03:28:50.955425Z] [nf-67debace85465768d5f0d72ccd0f3572-475ac-rfg8n] [592_1] [TaskManager] Completed command task: 'CallGenome+Indel_concat_vcf' launched from sub-workflow 'CallGenome'
[2026-06-05T03:28:50.955619Z] [nf-67debace85465768d5f0d72ccd0f3572-475ac-rfg8n] [592_1] [TaskManager] Launching command task: 'CallGenome+SNV_index_vcf' from sub-workflow 'CallGenome'
[2026-06-05T03:28:50.955841Z] [nf-67debace85465768d5f0d72ccd0f3572-475ac-rfg8n] [592_1] [TaskManager] Launching command task: 'CallGenome+Indel_index_vcf' from sub-workflow 'CallGenome'
[2026-06-05T03:28:50.958434Z] [nf-67debace85465768d5f0d72ccd0f3572-475ac-rfg8n] [592_1] [TaskRunner:CallGenome+Indel_index_vcf] Task initiated on local node
[2026-06-05T03:28:50.959314Z] [nf-67debace85465768d5f0d72ccd0f3572-475ac-rfg8n] [592_1] [TaskRunner:CallGenome+SNV_index_vcf] Task initiated on local node
[2026-06-05T03:28:50.987799Z] [nf-67debace85465768d5f0d72ccd0f3572-475ac-rfg8n] [592_1] [TaskManager] Completed command task: 'CallGenome+Indel_index_vcf' launched from sub-workflow 'CallGenome'
[2026-06-05T03:28:50.987857Z] [nf-67debace85465768d5f0d72ccd0f3572-475ac-rfg8n] [592_1] [TaskManager] Completed command task: 'CallGenome+SNV_index_vcf' launched from sub-workflow 'CallGenome'
[2026-06-05T03:28:50.988026Z] [nf-67debace85465768d5f0d72ccd0f3572-475ac-rfg8n] [592_1] [TaskManager] Launching command task: 'CallGenome+removeTmpDir' from sub-workflow 'CallGenome'
[2026-06-05T03:28:50.990178Z] [nf-67debace85465768d5f0d72ccd0f3572-475ac-rfg8n] [592_1] [TaskRunner:CallGenome+removeTmpDir] Task initiated on local node
[2026-06-05T03:28:51.020725Z] [nf-67debace85465768d5f0d72ccd0f3572-475ac-rfg8n] [592_1] [TaskManager] Completed command task: 'CallGenome+removeTmpDir' launched from sub-workflow 'CallGenome'
[2026-06-05T03:28:57.337847Z] [nf-67debace85465768d5f0d72ccd0f3572-475ac-rfg8n] [592_1] [TaskManager] Completed sub-workflow task: 'CallGenome' launched from master workflow
[2026-06-05T03:29:11.450957Z] [nf-67debace85465768d5f0d72ccd0f3572-475ac-rfg8n] [592_1] [WorkflowRunner] Strelka somatic workflow successfully completed.
[2026-06-05T03:29:11.450957Z] [nf-67debace85465768d5f0d72ccd0f3572-475ac-rfg8n] [592_1] [WorkflowRunner] 
[2026-06-05T03:29:11.450957Z] [nf-67debace85465768d5f0d72ccd0f3572-475ac-rfg8n] [592_1] [WorkflowRunner] 	workflow version: 2.9.10
[2026-06-05T03:29:11.451018Z] [nf-67debace85465768d5f0d72ccd0f3572-475ac-rfg8n] [592_1] [WorkflowRunner] 
[2026-06-05T03:29:11.451026Z] [nf-67debace85465768d5f0d72ccd0f3572-475ac-rfg8n] [592_1] [WorkflowRunner] Workflow successfully completed all tasks
[2026-06-05T03:29:11.451032Z] [nf-67debace85465768d5f0d72ccd0f3572-475ac-rfg8n] [592_1] [WorkflowRunner] Elapsed time for full workflow: 33 sec