[2026-06-05T03:28:44.888877Z] [nf-25b22bb31b18aab6a1de4e5cbfdc4869-f7acf-m4wn5] [739_1] [WorkflowRunner] Initiating pyFlow run
[2026-06-05T03:28:44.889577Z] [nf-25b22bb31b18aab6a1de4e5cbfdc4869-f7acf-m4wn5] [739_1] [WorkflowRunner] pyFlowClientWorkflowClass: StrelkaSomaticWorkflow
[2026-06-05T03:28:44.889607Z] [nf-25b22bb31b18aab6a1de4e5cbfdc4869-f7acf-m4wn5] [739_1] [WorkflowRunner] pyFlowVersion: 1.1.20
[2026-06-05T03:28:44.889615Z] [nf-25b22bb31b18aab6a1de4e5cbfdc4869-f7acf-m4wn5] [739_1] [WorkflowRunner] pythonVersion: 2.7.15.final.0
[2026-06-05T03:28:44.889621Z] [nf-25b22bb31b18aab6a1de4e5cbfdc4869-f7acf-m4wn5] [739_1] [WorkflowRunner] WorkingDir: '/tmp/nxf.XXXX7PPXIx'
[2026-06-05T03:28:44.889627Z] [nf-25b22bb31b18aab6a1de4e5cbfdc4869-f7acf-m4wn5] [739_1] [WorkflowRunner] ProcessCmdLine: '/var/tmp/strelka/runWorkflow.py -m local -j 8'
[2026-06-05T03:28:44.889634Z] [nf-25b22bb31b18aab6a1de4e5cbfdc4869-f7acf-m4wn5] [739_1] [WorkflowRunner] [RunParameters] mode: local
[2026-06-05T03:28:44.889658Z] [nf-25b22bb31b18aab6a1de4e5cbfdc4869-f7acf-m4wn5] [739_1] [WorkflowRunner] [RunParameters] nCores: 8
[2026-06-05T03:28:44.889663Z] [nf-25b22bb31b18aab6a1de4e5cbfdc4869-f7acf-m4wn5] [739_1] [WorkflowRunner] [RunParameters] memMb: 1523801
[2026-06-05T03:28:44.889668Z] [nf-25b22bb31b18aab6a1de4e5cbfdc4869-f7acf-m4wn5] [739_1] [WorkflowRunner] [RunParameters] dataDir: /var/tmp/strelka/workspace/pyflow.data
[2026-06-05T03:28:44.889674Z] [nf-25b22bb31b18aab6a1de4e5cbfdc4869-f7acf-m4wn5] [739_1] [WorkflowRunner] [RunParameters] isDryRun: False
[2026-06-05T03:28:44.889680Z] [nf-25b22bb31b18aab6a1de4e5cbfdc4869-f7acf-m4wn5] [739_1] [WorkflowRunner] [RunParameters] isContinue: False
[2026-06-05T03:28:44.889685Z] [nf-25b22bb31b18aab6a1de4e5cbfdc4869-f7acf-m4wn5] [739_1] [WorkflowRunner] [RunParameters] isForceContinue: True
[2026-06-05T03:28:44.889691Z] [nf-25b22bb31b18aab6a1de4e5cbfdc4869-f7acf-m4wn5] [739_1] [WorkflowRunner] [RunParameters] mailTo: ''
[2026-06-05T03:28:44.890440Z] [nf-25b22bb31b18aab6a1de4e5cbfdc4869-f7acf-m4wn5] [739_1] [TaskRunner:masterWorkflow] Starting task specification for master workflow
[2026-06-05T03:28:44.890532Z] [nf-25b22bb31b18aab6a1de4e5cbfdc4869-f7acf-m4wn5] [739_1] [StrelkaSomaticWorkflow] Initiating Strelka somatic workflow version: 2.9.10
[2026-06-05T03:28:44.897877Z] [nf-25b22bb31b18aab6a1de4e5cbfdc4869-f7acf-m4wn5] [739_1] [WorkflowRunner] Adding sub-workflow task 'CallGenome' to master workflow
[2026-06-05T03:28:44.898505Z] [nf-25b22bb31b18aab6a1de4e5cbfdc4869-f7acf-m4wn5] [739_1] [TaskRunner:masterWorkflow] Finished task specification for master workflow
[2026-06-05T03:28:44.898698Z] [nf-25b22bb31b18aab6a1de4e5cbfdc4869-f7acf-m4wn5] [739_1] [TaskManager] Launching sub-workflow task: 'CallGenome' from master workflow
[2026-06-05T03:28:44.898943Z] [nf-25b22bb31b18aab6a1de4e5cbfdc4869-f7acf-m4wn5] [739_1] [TaskRunner:CallGenome] Starting task specification for sub-workflow
[2026-06-05T03:28:44.899344Z] [nf-25b22bb31b18aab6a1de4e5cbfdc4869-f7acf-m4wn5] [739_1] [WorkflowRunner] Adding command task 'CallGenome+makeTmpDir' to sub-workflow 'CallGenome'
[2026-06-05T03:28:44.899782Z] [nf-25b22bb31b18aab6a1de4e5cbfdc4869-f7acf-m4wn5] [739_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0000' to sub-workflow 'CallGenome'
[2026-06-05T03:28:44.899901Z] [nf-25b22bb31b18aab6a1de4e5cbfdc4869-f7acf-m4wn5] [739_1] [WorkflowRunner] Adding command task 'CallGenome+fixVcfHeader_chromId_000_chr1_0000' to sub-workflow 'CallGenome'
[2026-06-05T03:28:44.899990Z] [nf-25b22bb31b18aab6a1de4e5cbfdc4869-f7acf-m4wn5] [739_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0000' to sub-workflow 'CallGenome'
[2026-06-05T03:28:44.900142Z] [nf-25b22bb31b18aab6a1de4e5cbfdc4869-f7acf-m4wn5] [739_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0001' to sub-workflow 'CallGenome'
[2026-06-05T03:28:44.900231Z] [nf-25b22bb31b18aab6a1de4e5cbfdc4869-f7acf-m4wn5] [739_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0001' to sub-workflow 'CallGenome'
[2026-06-05T03:28:44.900384Z] [nf-25b22bb31b18aab6a1de4e5cbfdc4869-f7acf-m4wn5] [739_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0002' to sub-workflow 'CallGenome'
[2026-06-05T03:28:44.900883Z] [nf-25b22bb31b18aab6a1de4e5cbfdc4869-f7acf-m4wn5] [739_1] [TaskManager] Launching command task: 'CallGenome+makeTmpDir' from sub-workflow 'CallGenome'
[2026-06-05T03:28:44.901065Z] [nf-25b22bb31b18aab6a1de4e5cbfdc4869-f7acf-m4wn5] [739_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0002' to sub-workflow 'CallGenome'
[2026-06-05T03:28:44.901691Z] [nf-25b22bb31b18aab6a1de4e5cbfdc4869-f7acf-m4wn5] [739_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0003' to sub-workflow 'CallGenome'
[2026-06-05T03:28:44.902234Z] [nf-25b22bb31b18aab6a1de4e5cbfdc4869-f7acf-m4wn5] [739_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0003' to sub-workflow 'CallGenome'
[2026-06-05T03:28:44.902532Z] [nf-25b22bb31b18aab6a1de4e5cbfdc4869-f7acf-m4wn5] [739_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0004' to sub-workflow 'CallGenome'
[2026-06-05T03:28:44.902709Z] [nf-25b22bb31b18aab6a1de4e5cbfdc4869-f7acf-m4wn5] [739_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0004' to sub-workflow 'CallGenome'
[2026-06-05T03:28:44.905251Z] [nf-25b22bb31b18aab6a1de4e5cbfdc4869-f7acf-m4wn5] [739_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0005' to sub-workflow 'CallGenome'
[2026-06-05T03:28:44.905881Z] [nf-25b22bb31b18aab6a1de4e5cbfdc4869-f7acf-m4wn5] [739_1] [TaskRunner:CallGenome+makeTmpDir] Task initiated on local node
[2026-06-05T03:28:44.906107Z] [nf-25b22bb31b18aab6a1de4e5cbfdc4869-f7acf-m4wn5] [739_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0005' to sub-workflow 'CallGenome'
[2026-06-05T03:28:44.906597Z] [nf-25b22bb31b18aab6a1de4e5cbfdc4869-f7acf-m4wn5] [739_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0006' to sub-workflow 'CallGenome'
[2026-06-05T03:28:44.906907Z] [nf-25b22bb31b18aab6a1de4e5cbfdc4869-f7acf-m4wn5] [739_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0006' to sub-workflow 'CallGenome'
[2026-06-05T03:28:44.907069Z] [nf-25b22bb31b18aab6a1de4e5cbfdc4869-f7acf-m4wn5] [739_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0007' to sub-workflow 'CallGenome'
[2026-06-05T03:28:44.907155Z] [nf-25b22bb31b18aab6a1de4e5cbfdc4869-f7acf-m4wn5] [739_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0007' to sub-workflow 'CallGenome'
[2026-06-05T03:28:44.907419Z] [nf-25b22bb31b18aab6a1de4e5cbfdc4869-f7acf-m4wn5] [739_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0008' to sub-workflow 'CallGenome'
[2026-06-05T03:28:44.907511Z] [nf-25b22bb31b18aab6a1de4e5cbfdc4869-f7acf-m4wn5] [739_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0008' to sub-workflow 'CallGenome'
[2026-06-05T03:28:44.907657Z] [nf-25b22bb31b18aab6a1de4e5cbfdc4869-f7acf-m4wn5] [739_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0009' to sub-workflow 'CallGenome'
[2026-06-05T03:28:44.907745Z] [nf-25b22bb31b18aab6a1de4e5cbfdc4869-f7acf-m4wn5] [739_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0009' to sub-workflow 'CallGenome'
[2026-06-05T03:28:44.907909Z] [nf-25b22bb31b18aab6a1de4e5cbfdc4869-f7acf-m4wn5] [739_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0010' to sub-workflow 'CallGenome'
[2026-06-05T03:28:44.908279Z] [nf-25b22bb31b18aab6a1de4e5cbfdc4869-f7acf-m4wn5] [739_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0010' to sub-workflow 'CallGenome'
[2026-06-05T03:28:44.908802Z] [nf-25b22bb31b18aab6a1de4e5cbfdc4869-f7acf-m4wn5] [739_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0011' to sub-workflow 'CallGenome'
[2026-06-05T03:28:44.908929Z] [nf-25b22bb31b18aab6a1de4e5cbfdc4869-f7acf-m4wn5] [739_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0011' to sub-workflow 'CallGenome'
[2026-06-05T03:28:44.909087Z] [nf-25b22bb31b18aab6a1de4e5cbfdc4869-f7acf-m4wn5] [739_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0012' to sub-workflow 'CallGenome'
[2026-06-05T03:28:44.909208Z] [nf-25b22bb31b18aab6a1de4e5cbfdc4869-f7acf-m4wn5] [739_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0012' to sub-workflow 'CallGenome'
[2026-06-05T03:28:44.909365Z] [nf-25b22bb31b18aab6a1de4e5cbfdc4869-f7acf-m4wn5] [739_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0013' to sub-workflow 'CallGenome'
[2026-06-05T03:28:44.909455Z] [nf-25b22bb31b18aab6a1de4e5cbfdc4869-f7acf-m4wn5] [739_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0013' to sub-workflow 'CallGenome'
[2026-06-05T03:28:44.909625Z] [nf-25b22bb31b18aab6a1de4e5cbfdc4869-f7acf-m4wn5] [739_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0014' to sub-workflow 'CallGenome'
[2026-06-05T03:28:44.909858Z] [nf-25b22bb31b18aab6a1de4e5cbfdc4869-f7acf-m4wn5] [739_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0014' to sub-workflow 'CallGenome'
[2026-06-05T03:28:44.910443Z] [nf-25b22bb31b18aab6a1de4e5cbfdc4869-f7acf-m4wn5] [739_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0015' to sub-workflow 'CallGenome'
[2026-06-05T03:28:44.910533Z] [nf-25b22bb31b18aab6a1de4e5cbfdc4869-f7acf-m4wn5] [739_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0015' to sub-workflow 'CallGenome'
[2026-06-05T03:28:44.910677Z] [nf-25b22bb31b18aab6a1de4e5cbfdc4869-f7acf-m4wn5] [739_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0016' to sub-workflow 'CallGenome'
[2026-06-05T03:28:44.910757Z] [nf-25b22bb31b18aab6a1de4e5cbfdc4869-f7acf-m4wn5] [739_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0016' to sub-workflow 'CallGenome'
[2026-06-05T03:28:44.910898Z] [nf-25b22bb31b18aab6a1de4e5cbfdc4869-f7acf-m4wn5] [739_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0017' to sub-workflow 'CallGenome'
[2026-06-05T03:28:44.910975Z] [nf-25b22bb31b18aab6a1de4e5cbfdc4869-f7acf-m4wn5] [739_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0017' to sub-workflow 'CallGenome'
[2026-06-05T03:28:44.911123Z] [nf-25b22bb31b18aab6a1de4e5cbfdc4869-f7acf-m4wn5] [739_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0018' to sub-workflow 'CallGenome'
[2026-06-05T03:28:44.911203Z] [nf-25b22bb31b18aab6a1de4e5cbfdc4869-f7acf-m4wn5] [739_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0018' to sub-workflow 'CallGenome'
[2026-06-05T03:28:44.911362Z] [nf-25b22bb31b18aab6a1de4e5cbfdc4869-f7acf-m4wn5] [739_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0019' to sub-workflow 'CallGenome'
[2026-06-05T03:28:44.911524Z] [nf-25b22bb31b18aab6a1de4e5cbfdc4869-f7acf-m4wn5] [739_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0019' to sub-workflow 'CallGenome'
[2026-06-05T03:28:44.913054Z] [nf-25b22bb31b18aab6a1de4e5cbfdc4869-f7acf-m4wn5] [739_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0020' to sub-workflow 'CallGenome'
[2026-06-05T03:28:44.913156Z] [nf-25b22bb31b18aab6a1de4e5cbfdc4869-f7acf-m4wn5] [739_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0020' to sub-workflow 'CallGenome'
[2026-06-05T03:28:44.913300Z] [nf-25b22bb31b18aab6a1de4e5cbfdc4869-f7acf-m4wn5] [739_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0000' to sub-workflow 'CallGenome'
[2026-06-05T03:28:44.913478Z] [nf-25b22bb31b18aab6a1de4e5cbfdc4869-f7acf-m4wn5] [739_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0000' to sub-workflow 'CallGenome'
[2026-06-05T03:28:44.913633Z] [nf-25b22bb31b18aab6a1de4e5cbfdc4869-f7acf-m4wn5] [739_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0001' to sub-workflow 'CallGenome'
[2026-06-05T03:28:44.913738Z] [nf-25b22bb31b18aab6a1de4e5cbfdc4869-f7acf-m4wn5] [739_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0001' to sub-workflow 'CallGenome'
[2026-06-05T03:28:44.913885Z] [nf-25b22bb31b18aab6a1de4e5cbfdc4869-f7acf-m4wn5] [739_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0002' to sub-workflow 'CallGenome'
[2026-06-05T03:28:44.914024Z] [nf-25b22bb31b18aab6a1de4e5cbfdc4869-f7acf-m4wn5] [739_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0002' to sub-workflow 'CallGenome'
[2026-06-05T03:28:44.914565Z] [nf-25b22bb31b18aab6a1de4e5cbfdc4869-f7acf-m4wn5] [739_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0003' to sub-workflow 'CallGenome'
[2026-06-05T03:28:44.915192Z] [nf-25b22bb31b18aab6a1de4e5cbfdc4869-f7acf-m4wn5] [739_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0003' to sub-workflow 'CallGenome'
[2026-06-05T03:28:44.915394Z] [nf-25b22bb31b18aab6a1de4e5cbfdc4869-f7acf-m4wn5] [739_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0004' to sub-workflow 'CallGenome'
[2026-06-05T03:28:44.915483Z] [nf-25b22bb31b18aab6a1de4e5cbfdc4869-f7acf-m4wn5] [739_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0004' to sub-workflow 'CallGenome'
[2026-06-05T03:28:44.915635Z] [nf-25b22bb31b18aab6a1de4e5cbfdc4869-f7acf-m4wn5] [739_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0005' to sub-workflow 'CallGenome'
[2026-06-05T03:28:44.915721Z] [nf-25b22bb31b18aab6a1de4e5cbfdc4869-f7acf-m4wn5] [739_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0005' to sub-workflow 'CallGenome'
[2026-06-05T03:28:44.915866Z] [nf-25b22bb31b18aab6a1de4e5cbfdc4869-f7acf-m4wn5] [739_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0006' to sub-workflow 'CallGenome'
[2026-06-05T03:28:44.915990Z] [nf-25b22bb31b18aab6a1de4e5cbfdc4869-f7acf-m4wn5] [739_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0006' to sub-workflow 'CallGenome'
[2026-06-05T03:28:44.916174Z] [nf-25b22bb31b18aab6a1de4e5cbfdc4869-f7acf-m4wn5] [739_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0007' to sub-workflow 'CallGenome'
[2026-06-05T03:28:44.916405Z] [nf-25b22bb31b18aab6a1de4e5cbfdc4869-f7acf-m4wn5] [739_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0007' to sub-workflow 'CallGenome'
[2026-06-05T03:28:44.917463Z] [nf-25b22bb31b18aab6a1de4e5cbfdc4869-f7acf-m4wn5] [739_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0008' to sub-workflow 'CallGenome'
[2026-06-05T03:28:44.918088Z] [nf-25b22bb31b18aab6a1de4e5cbfdc4869-f7acf-m4wn5] [739_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0008' to sub-workflow 'CallGenome'
[2026-06-05T03:28:44.918315Z] [nf-25b22bb31b18aab6a1de4e5cbfdc4869-f7acf-m4wn5] [739_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0009' to sub-workflow 'CallGenome'
[2026-06-05T03:28:44.918420Z] [nf-25b22bb31b18aab6a1de4e5cbfdc4869-f7acf-m4wn5] [739_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0009' to sub-workflow 'CallGenome'
[2026-06-05T03:28:44.918573Z] [nf-25b22bb31b18aab6a1de4e5cbfdc4869-f7acf-m4wn5] [739_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0010' to sub-workflow 'CallGenome'
[2026-06-05T03:28:44.918656Z] [nf-25b22bb31b18aab6a1de4e5cbfdc4869-f7acf-m4wn5] [739_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0010' to sub-workflow 'CallGenome'
[2026-06-05T03:28:44.935508Z] [nf-25b22bb31b18aab6a1de4e5cbfdc4869-f7acf-m4wn5] [739_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0011' to sub-workflow 'CallGenome'
[2026-06-05T03:28:44.935799Z] [nf-25b22bb31b18aab6a1de4e5cbfdc4869-f7acf-m4wn5] [739_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0011' to sub-workflow 'CallGenome'
[2026-06-05T03:28:44.935903Z] [nf-25b22bb31b18aab6a1de4e5cbfdc4869-f7acf-m4wn5] [739_1] [WorkflowRunner] Adding command task 'CallGenome+completedAllGenomeSegments' to sub-workflow 'CallGenome'
[2026-06-05T03:28:44.936147Z] [nf-25b22bb31b18aab6a1de4e5cbfdc4869-f7acf-m4wn5] [739_1] [WorkflowRunner] Adding command task 'CallGenome+SNV_concat_vcf' to sub-workflow 'CallGenome'
[2026-06-05T03:28:44.936239Z] [nf-25b22bb31b18aab6a1de4e5cbfdc4869-f7acf-m4wn5] [739_1] [WorkflowRunner] Adding command task 'CallGenome+SNV_index_vcf' to sub-workflow 'CallGenome'
[2026-06-05T03:28:44.936352Z] [nf-25b22bb31b18aab6a1de4e5cbfdc4869-f7acf-m4wn5] [739_1] [WorkflowRunner] Adding command task 'CallGenome+Indel_concat_vcf' to sub-workflow 'CallGenome'
[2026-06-05T03:28:44.938167Z] [nf-25b22bb31b18aab6a1de4e5cbfdc4869-f7acf-m4wn5] [739_1] [WorkflowRunner] Adding command task 'CallGenome+Indel_index_vcf' to sub-workflow 'CallGenome'
[2026-06-05T03:28:44.938550Z] [nf-25b22bb31b18aab6a1de4e5cbfdc4869-f7acf-m4wn5] [739_1] [TaskManager] Completed command task: 'CallGenome+makeTmpDir' launched from sub-workflow 'CallGenome'
[2026-06-05T03:28:44.938960Z] [nf-25b22bb31b18aab6a1de4e5cbfdc4869-f7acf-m4wn5] [739_1] [WorkflowRunner] Adding command task 'CallGenome+mergeRunStats' to sub-workflow 'CallGenome'
[2026-06-05T03:28:44.939913Z] [nf-25b22bb31b18aab6a1de4e5cbfdc4869-f7acf-m4wn5] [739_1] [WorkflowRunner] Adding command task 'CallGenome+removeTmpDir' to sub-workflow 'CallGenome'
[2026-06-05T03:28:44.940279Z] [nf-25b22bb31b18aab6a1de4e5cbfdc4869-f7acf-m4wn5] [739_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0011' from sub-workflow 'CallGenome'
[2026-06-05T03:28:44.940562Z] [nf-25b22bb31b18aab6a1de4e5cbfdc4869-f7acf-m4wn5] [739_1] [TaskRunner:CallGenome] Finished task specification for sub-workflow
[2026-06-05T03:28:44.941104Z] [nf-25b22bb31b18aab6a1de4e5cbfdc4869-f7acf-m4wn5] [739_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0001' from sub-workflow 'CallGenome'
[2026-06-05T03:28:44.941829Z] [nf-25b22bb31b18aab6a1de4e5cbfdc4869-f7acf-m4wn5] [739_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0009' from sub-workflow 'CallGenome'
[2026-06-05T03:28:44.942633Z] [nf-25b22bb31b18aab6a1de4e5cbfdc4869-f7acf-m4wn5] [739_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0012' from sub-workflow 'CallGenome'
[2026-06-05T03:28:44.943683Z] [nf-25b22bb31b18aab6a1de4e5cbfdc4869-f7acf-m4wn5] [739_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0019' from sub-workflow 'CallGenome'
[2026-06-05T03:28:44.944564Z] [nf-25b22bb31b18aab6a1de4e5cbfdc4869-f7acf-m4wn5] [739_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0001' from sub-workflow 'CallGenome'
[2026-06-05T03:28:44.945909Z] [nf-25b22bb31b18aab6a1de4e5cbfdc4869-f7acf-m4wn5] [739_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0004' from sub-workflow 'CallGenome'
[2026-06-05T03:28:44.946963Z] [nf-25b22bb31b18aab6a1de4e5cbfdc4869-f7acf-m4wn5] [739_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0006' from sub-workflow 'CallGenome'
[2026-06-05T03:28:44.951763Z] [nf-25b22bb31b18aab6a1de4e5cbfdc4869-f7acf-m4wn5] [739_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0011] Task initiated on local node
[2026-06-05T03:28:44.954921Z] [nf-25b22bb31b18aab6a1de4e5cbfdc4869-f7acf-m4wn5] [739_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0001] Task initiated on local node
[2026-06-05T03:28:44.961156Z] [nf-25b22bb31b18aab6a1de4e5cbfdc4869-f7acf-m4wn5] [739_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0009] Task initiated on local node
[2026-06-05T03:28:44.965879Z] [nf-25b22bb31b18aab6a1de4e5cbfdc4869-f7acf-m4wn5] [739_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0019] Task initiated on local node
[2026-06-05T03:28:44.969009Z] [nf-25b22bb31b18aab6a1de4e5cbfdc4869-f7acf-m4wn5] [739_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0012] Task initiated on local node
[2026-06-05T03:28:44.971235Z] [nf-25b22bb31b18aab6a1de4e5cbfdc4869-f7acf-m4wn5] [739_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0004] Task initiated on local node
[2026-06-05T03:28:44.971506Z] [nf-25b22bb31b18aab6a1de4e5cbfdc4869-f7acf-m4wn5] [739_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0006] Task initiated on local node
[2026-06-05T03:28:44.971799Z] [nf-25b22bb31b18aab6a1de4e5cbfdc4869-f7acf-m4wn5] [739_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0001] Task initiated on local node
[2026-06-05T03:28:45.033106Z] [nf-25b22bb31b18aab6a1de4e5cbfdc4869-f7acf-m4wn5] [739_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0011' launched from sub-workflow 'CallGenome'
[2026-06-05T03:28:45.034057Z] [nf-25b22bb31b18aab6a1de4e5cbfdc4869-f7acf-m4wn5] [739_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0011' from sub-workflow 'CallGenome'
[2026-06-05T03:28:45.039581Z] [nf-25b22bb31b18aab6a1de4e5cbfdc4869-f7acf-m4wn5] [739_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0011] Task initiated on local node
[2026-06-05T03:28:45.100123Z] [nf-25b22bb31b18aab6a1de4e5cbfdc4869-f7acf-m4wn5] [739_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0011' launched from sub-workflow 'CallGenome'
[2026-06-05T03:28:45.101013Z] [nf-25b22bb31b18aab6a1de4e5cbfdc4869-f7acf-m4wn5] [739_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0010' from sub-workflow 'CallGenome'
[2026-06-05T03:28:45.106403Z] [nf-25b22bb31b18aab6a1de4e5cbfdc4869-f7acf-m4wn5] [739_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0010] Task initiated on local node
[2026-06-05T03:28:45.217026Z] [nf-25b22bb31b18aab6a1de4e5cbfdc4869-f7acf-m4wn5] [739_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0010' launched from sub-workflow 'CallGenome'
[2026-06-05T03:28:45.217910Z] [nf-25b22bb31b18aab6a1de4e5cbfdc4869-f7acf-m4wn5] [739_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0014' from sub-workflow 'CallGenome'
[2026-06-05T03:28:45.221539Z] [nf-25b22bb31b18aab6a1de4e5cbfdc4869-f7acf-m4wn5] [739_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0014] Task initiated on local node
[2026-06-05T03:28:46.384182Z] [nf-25b22bb31b18aab6a1de4e5cbfdc4869-f7acf-m4wn5] [739_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0006' launched from sub-workflow 'CallGenome'
[2026-06-05T03:28:46.385109Z] [nf-25b22bb31b18aab6a1de4e5cbfdc4869-f7acf-m4wn5] [739_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0008' from sub-workflow 'CallGenome'
[2026-06-05T03:28:46.388778Z] [nf-25b22bb31b18aab6a1de4e5cbfdc4869-f7acf-m4wn5] [739_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0008] Task initiated on local node
[2026-06-05T03:28:46.499649Z] [nf-25b22bb31b18aab6a1de4e5cbfdc4869-f7acf-m4wn5] [739_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0008' launched from sub-workflow 'CallGenome'
[2026-06-05T03:28:46.500599Z] [nf-25b22bb31b18aab6a1de4e5cbfdc4869-f7acf-m4wn5] [739_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0007' from sub-workflow 'CallGenome'
[2026-06-05T03:28:46.503719Z] [nf-25b22bb31b18aab6a1de4e5cbfdc4869-f7acf-m4wn5] [739_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0007] Task initiated on local node
[2026-06-05T03:28:46.564950Z] [nf-25b22bb31b18aab6a1de4e5cbfdc4869-f7acf-m4wn5] [739_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0007' launched from sub-workflow 'CallGenome'
[2026-06-05T03:28:46.565791Z] [nf-25b22bb31b18aab6a1de4e5cbfdc4869-f7acf-m4wn5] [739_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0000' from sub-workflow 'CallGenome'
[2026-06-05T03:28:46.569040Z] [nf-25b22bb31b18aab6a1de4e5cbfdc4869-f7acf-m4wn5] [739_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0000] Task initiated on local node
[2026-06-05T03:28:46.930416Z] [nf-25b22bb31b18aab6a1de4e5cbfdc4869-f7acf-m4wn5] [739_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0004' launched from sub-workflow 'CallGenome'
[2026-06-05T03:28:46.931339Z] [nf-25b22bb31b18aab6a1de4e5cbfdc4869-f7acf-m4wn5] [739_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0007' from sub-workflow 'CallGenome'
[2026-06-05T03:28:46.934071Z] [nf-25b22bb31b18aab6a1de4e5cbfdc4869-f7acf-m4wn5] [739_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0007] Task initiated on local node
[2026-06-05T03:28:47.646357Z] [nf-25b22bb31b18aab6a1de4e5cbfdc4869-f7acf-m4wn5] [739_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0012' launched from sub-workflow 'CallGenome'
[2026-06-05T03:28:47.646440Z] [nf-25b22bb31b18aab6a1de4e5cbfdc4869-f7acf-m4wn5] [739_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0001' launched from sub-workflow 'CallGenome'
[2026-06-05T03:28:47.647309Z] [nf-25b22bb31b18aab6a1de4e5cbfdc4869-f7acf-m4wn5] [739_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0012' from sub-workflow 'CallGenome'
[2026-06-05T03:28:47.647701Z] [nf-25b22bb31b18aab6a1de4e5cbfdc4869-f7acf-m4wn5] [739_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0011' from sub-workflow 'CallGenome'
[2026-06-05T03:28:47.651544Z] [nf-25b22bb31b18aab6a1de4e5cbfdc4869-f7acf-m4wn5] [739_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0012] Task initiated on local node
[2026-06-05T03:28:47.652746Z] [nf-25b22bb31b18aab6a1de4e5cbfdc4869-f7acf-m4wn5] [739_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0011] Task initiated on local node
[2026-06-05T03:28:47.712217Z] [nf-25b22bb31b18aab6a1de4e5cbfdc4869-f7acf-m4wn5] [739_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0012' launched from sub-workflow 'CallGenome'
[2026-06-05T03:28:47.713325Z] [nf-25b22bb31b18aab6a1de4e5cbfdc4869-f7acf-m4wn5] [739_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0001' from sub-workflow 'CallGenome'
[2026-06-05T03:28:47.713591Z] [nf-25b22bb31b18aab6a1de4e5cbfdc4869-f7acf-m4wn5] [739_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0011' launched from sub-workflow 'CallGenome'
[2026-06-05T03:28:47.716282Z] [nf-25b22bb31b18aab6a1de4e5cbfdc4869-f7acf-m4wn5] [739_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0011' from sub-workflow 'CallGenome'
[2026-06-05T03:28:47.716951Z] [nf-25b22bb31b18aab6a1de4e5cbfdc4869-f7acf-m4wn5] [739_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0001] Task initiated on local node
[2026-06-05T03:28:47.719501Z] [nf-25b22bb31b18aab6a1de4e5cbfdc4869-f7acf-m4wn5] [739_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0011] Task initiated on local node
[2026-06-05T03:28:47.748326Z] [nf-25b22bb31b18aab6a1de4e5cbfdc4869-f7acf-m4wn5] [739_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0001' launched from sub-workflow 'CallGenome'
[2026-06-05T03:28:47.749274Z] [nf-25b22bb31b18aab6a1de4e5cbfdc4869-f7acf-m4wn5] [739_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0000' from sub-workflow 'CallGenome'
[2026-06-05T03:28:47.749741Z] [nf-25b22bb31b18aab6a1de4e5cbfdc4869-f7acf-m4wn5] [739_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0011' launched from sub-workflow 'CallGenome'
[2026-06-05T03:28:47.751009Z] [nf-25b22bb31b18aab6a1de4e5cbfdc4869-f7acf-m4wn5] [739_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0016' from sub-workflow 'CallGenome'
[2026-06-05T03:28:47.753657Z] [nf-25b22bb31b18aab6a1de4e5cbfdc4869-f7acf-m4wn5] [739_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0000] Task initiated on local node
[2026-06-05T03:28:47.755179Z] [nf-25b22bb31b18aab6a1de4e5cbfdc4869-f7acf-m4wn5] [739_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0016] Task initiated on local node
[2026-06-05T03:28:47.814980Z] [nf-25b22bb31b18aab6a1de4e5cbfdc4869-f7acf-m4wn5] [739_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0014' launched from sub-workflow 'CallGenome'
[2026-06-05T03:28:47.815045Z] [nf-25b22bb31b18aab6a1de4e5cbfdc4869-f7acf-m4wn5] [739_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0009' launched from sub-workflow 'CallGenome'
[2026-06-05T03:28:47.815827Z] [nf-25b22bb31b18aab6a1de4e5cbfdc4869-f7acf-m4wn5] [739_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0014' from sub-workflow 'CallGenome'
[2026-06-05T03:28:47.816156Z] [nf-25b22bb31b18aab6a1de4e5cbfdc4869-f7acf-m4wn5] [739_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0005' from sub-workflow 'CallGenome'
[2026-06-05T03:28:47.819775Z] [nf-25b22bb31b18aab6a1de4e5cbfdc4869-f7acf-m4wn5] [739_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0014] Task initiated on local node
[2026-06-05T03:28:47.820729Z] [nf-25b22bb31b18aab6a1de4e5cbfdc4869-f7acf-m4wn5] [739_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0005] Task initiated on local node
[2026-06-05T03:28:47.880510Z] [nf-25b22bb31b18aab6a1de4e5cbfdc4869-f7acf-m4wn5] [739_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0014' launched from sub-workflow 'CallGenome'
[2026-06-05T03:28:47.881225Z] [nf-25b22bb31b18aab6a1de4e5cbfdc4869-f7acf-m4wn5] [739_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0013' from sub-workflow 'CallGenome'
[2026-06-05T03:28:47.884286Z] [nf-25b22bb31b18aab6a1de4e5cbfdc4869-f7acf-m4wn5] [739_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0013] Task initiated on local node
[2026-06-05T03:28:47.995569Z] [nf-25b22bb31b18aab6a1de4e5cbfdc4869-f7acf-m4wn5] [739_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0019' launched from sub-workflow 'CallGenome'
[2026-06-05T03:28:47.996433Z] [nf-25b22bb31b18aab6a1de4e5cbfdc4869-f7acf-m4wn5] [739_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0008' from sub-workflow 'CallGenome'
[2026-06-05T03:28:47.999844Z] [nf-25b22bb31b18aab6a1de4e5cbfdc4869-f7acf-m4wn5] [739_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0008] Task initiated on local node
[2026-06-05T03:28:48.361151Z] [nf-25b22bb31b18aab6a1de4e5cbfdc4869-f7acf-m4wn5] [739_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0001' launched from sub-workflow 'CallGenome'
[2026-06-05T03:28:48.362024Z] [nf-25b22bb31b18aab6a1de4e5cbfdc4869-f7acf-m4wn5] [739_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0001' from sub-workflow 'CallGenome'
[2026-06-05T03:28:48.364844Z] [nf-25b22bb31b18aab6a1de4e5cbfdc4869-f7acf-m4wn5] [739_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0001] Task initiated on local node
[2026-06-05T03:28:48.393934Z] [nf-25b22bb31b18aab6a1de4e5cbfdc4869-f7acf-m4wn5] [739_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0001' launched from sub-workflow 'CallGenome'
[2026-06-05T03:28:48.394697Z] [nf-25b22bb31b18aab6a1de4e5cbfdc4869-f7acf-m4wn5] [739_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0003' from sub-workflow 'CallGenome'
[2026-06-05T03:28:48.397831Z] [nf-25b22bb31b18aab6a1de4e5cbfdc4869-f7acf-m4wn5] [739_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0003] Task initiated on local node
[2026-06-05T03:28:48.909464Z] [nf-25b22bb31b18aab6a1de4e5cbfdc4869-f7acf-m4wn5] [739_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0000' launched from sub-workflow 'CallGenome'
[2026-06-05T03:28:48.910312Z] [nf-25b22bb31b18aab6a1de4e5cbfdc4869-f7acf-m4wn5] [739_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0006' from sub-workflow 'CallGenome'
[2026-06-05T03:28:48.913407Z] [nf-25b22bb31b18aab6a1de4e5cbfdc4869-f7acf-m4wn5] [739_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0006] Task initiated on local node
[2026-06-05T03:28:48.926206Z] [nf-25b22bb31b18aab6a1de4e5cbfdc4869-f7acf-m4wn5] [739_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0005' launched from sub-workflow 'CallGenome'
[2026-06-05T03:28:48.926966Z] [nf-25b22bb31b18aab6a1de4e5cbfdc4869-f7acf-m4wn5] [739_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0000' from sub-workflow 'CallGenome'
[2026-06-05T03:28:48.929610Z] [nf-25b22bb31b18aab6a1de4e5cbfdc4869-f7acf-m4wn5] [739_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0000] Task initiated on local node
[2026-06-05T03:28:48.942656Z] [nf-25b22bb31b18aab6a1de4e5cbfdc4869-f7acf-m4wn5] [739_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0006' launched from sub-workflow 'CallGenome'
[2026-06-05T03:28:48.943385Z] [nf-25b22bb31b18aab6a1de4e5cbfdc4869-f7acf-m4wn5] [739_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0019' from sub-workflow 'CallGenome'
[2026-06-05T03:28:48.946277Z] [nf-25b22bb31b18aab6a1de4e5cbfdc4869-f7acf-m4wn5] [739_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0019] Task initiated on local node
[2026-06-05T03:28:48.959259Z] [nf-25b22bb31b18aab6a1de4e5cbfdc4869-f7acf-m4wn5] [739_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0000' launched from sub-workflow 'CallGenome'
[2026-06-05T03:28:48.959997Z] [nf-25b22bb31b18aab6a1de4e5cbfdc4869-f7acf-m4wn5] [739_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0006' from sub-workflow 'CallGenome'
[2026-06-05T03:28:48.962858Z] [nf-25b22bb31b18aab6a1de4e5cbfdc4869-f7acf-m4wn5] [739_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0006] Task initiated on local node
[2026-06-05T03:28:48.975860Z] [nf-25b22bb31b18aab6a1de4e5cbfdc4869-f7acf-m4wn5] [739_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0019' launched from sub-workflow 'CallGenome'
[2026-06-05T03:28:48.976561Z] [nf-25b22bb31b18aab6a1de4e5cbfdc4869-f7acf-m4wn5] [739_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0017' from sub-workflow 'CallGenome'
[2026-06-05T03:28:48.979381Z] [nf-25b22bb31b18aab6a1de4e5cbfdc4869-f7acf-m4wn5] [739_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0017] Task initiated on local node
[2026-06-05T03:28:49.140595Z] [nf-25b22bb31b18aab6a1de4e5cbfdc4869-f7acf-m4wn5] [739_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0016' launched from sub-workflow 'CallGenome'
[2026-06-05T03:28:49.140672Z] [nf-25b22bb31b18aab6a1de4e5cbfdc4869-f7acf-m4wn5] [739_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0007' launched from sub-workflow 'CallGenome'
[2026-06-05T03:28:49.141335Z] [nf-25b22bb31b18aab6a1de4e5cbfdc4869-f7acf-m4wn5] [739_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0008' from sub-workflow 'CallGenome'
[2026-06-05T03:28:49.141649Z] [nf-25b22bb31b18aab6a1de4e5cbfdc4869-f7acf-m4wn5] [739_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0005' from sub-workflow 'CallGenome'
[2026-06-05T03:28:49.145117Z] [nf-25b22bb31b18aab6a1de4e5cbfdc4869-f7acf-m4wn5] [739_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0008] Task initiated on local node
[2026-06-05T03:28:49.146254Z] [nf-25b22bb31b18aab6a1de4e5cbfdc4869-f7acf-m4wn5] [739_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0005] Task initiated on local node
[2026-06-05T03:28:49.173917Z] [nf-25b22bb31b18aab6a1de4e5cbfdc4869-f7acf-m4wn5] [739_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0008' launched from sub-workflow 'CallGenome'
[2026-06-05T03:28:49.174645Z] [nf-25b22bb31b18aab6a1de4e5cbfdc4869-f7acf-m4wn5] [739_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0005' from sub-workflow 'CallGenome'
[2026-06-05T03:28:49.177728Z] [nf-25b22bb31b18aab6a1de4e5cbfdc4869-f7acf-m4wn5] [739_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0005] Task initiated on local node
[2026-06-05T03:28:49.182306Z] [nf-25b22bb31b18aab6a1de4e5cbfdc4869-f7acf-m4wn5] [739_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0008' launched from sub-workflow 'CallGenome'
[2026-06-05T03:28:49.183002Z] [nf-25b22bb31b18aab6a1de4e5cbfdc4869-f7acf-m4wn5] [739_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0010' from sub-workflow 'CallGenome'
[2026-06-05T03:28:49.185158Z] [nf-25b22bb31b18aab6a1de4e5cbfdc4869-f7acf-m4wn5] [739_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0010] Task initiated on local node
[2026-06-05T03:28:49.198616Z] [nf-25b22bb31b18aab6a1de4e5cbfdc4869-f7acf-m4wn5] [739_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0000' launched from sub-workflow 'CallGenome'
[2026-06-05T03:28:49.199292Z] [nf-25b22bb31b18aab6a1de4e5cbfdc4869-f7acf-m4wn5] [739_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0018' from sub-workflow 'CallGenome'
[2026-06-05T03:28:49.202213Z] [nf-25b22bb31b18aab6a1de4e5cbfdc4869-f7acf-m4wn5] [739_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0018] Task initiated on local node
[2026-06-05T03:28:49.207106Z] [nf-25b22bb31b18aab6a1de4e5cbfdc4869-f7acf-m4wn5] [739_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0005' launched from sub-workflow 'CallGenome'
[2026-06-05T03:28:49.207736Z] [nf-25b22bb31b18aab6a1de4e5cbfdc4869-f7acf-m4wn5] [739_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0016' from sub-workflow 'CallGenome'
[2026-06-05T03:28:49.210348Z] [nf-25b22bb31b18aab6a1de4e5cbfdc4869-f7acf-m4wn5] [739_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0016] Task initiated on local node
[2026-06-05T03:28:49.215358Z] [nf-25b22bb31b18aab6a1de4e5cbfdc4869-f7acf-m4wn5] [739_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0010' launched from sub-workflow 'CallGenome'
[2026-06-05T03:28:49.215993Z] [nf-25b22bb31b18aab6a1de4e5cbfdc4869-f7acf-m4wn5] [739_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0007' from sub-workflow 'CallGenome'
[2026-06-05T03:28:49.218354Z] [nf-25b22bb31b18aab6a1de4e5cbfdc4869-f7acf-m4wn5] [739_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0007] Task initiated on local node
[2026-06-05T03:28:49.247595Z] [nf-25b22bb31b18aab6a1de4e5cbfdc4869-f7acf-m4wn5] [739_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0007' launched from sub-workflow 'CallGenome'
[2026-06-05T03:28:49.247656Z] [nf-25b22bb31b18aab6a1de4e5cbfdc4869-f7acf-m4wn5] [739_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0016' launched from sub-workflow 'CallGenome'
[2026-06-05T03:28:49.248234Z] [nf-25b22bb31b18aab6a1de4e5cbfdc4869-f7acf-m4wn5] [739_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0004' from sub-workflow 'CallGenome'
[2026-06-05T03:28:49.248452Z] [nf-25b22bb31b18aab6a1de4e5cbfdc4869-f7acf-m4wn5] [739_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0009' from sub-workflow 'CallGenome'
[2026-06-05T03:28:49.250894Z] [nf-25b22bb31b18aab6a1de4e5cbfdc4869-f7acf-m4wn5] [739_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0004] Task initiated on local node
[2026-06-05T03:28:49.252040Z] [nf-25b22bb31b18aab6a1de4e5cbfdc4869-f7acf-m4wn5] [739_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0009] Task initiated on local node
[2026-06-05T03:28:49.312333Z] [nf-25b22bb31b18aab6a1de4e5cbfdc4869-f7acf-m4wn5] [739_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0009' launched from sub-workflow 'CallGenome'
[2026-06-05T03:28:49.312396Z] [nf-25b22bb31b18aab6a1de4e5cbfdc4869-f7acf-m4wn5] [739_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0004' launched from sub-workflow 'CallGenome'
[2026-06-05T03:28:49.312973Z] [nf-25b22bb31b18aab6a1de4e5cbfdc4869-f7acf-m4wn5] [739_1] [TaskManager] Launching command task: 'CallGenome+fixVcfHeader_chromId_000_chr1_0000' from sub-workflow 'CallGenome'
[2026-06-05T03:28:49.313295Z] [nf-25b22bb31b18aab6a1de4e5cbfdc4869-f7acf-m4wn5] [739_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0007' from sub-workflow 'CallGenome'
[2026-06-05T03:28:49.316067Z] [nf-25b22bb31b18aab6a1de4e5cbfdc4869-f7acf-m4wn5] [739_1] [TaskRunner:CallGenome+fixVcfHeader_chromId_000_chr1_0000] Task initiated on local node
[2026-06-05T03:28:49.317356Z] [nf-25b22bb31b18aab6a1de4e5cbfdc4869-f7acf-m4wn5] [739_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0007] Task initiated on local node
[2026-06-05T03:28:49.345208Z] [nf-25b22bb31b18aab6a1de4e5cbfdc4869-f7acf-m4wn5] [739_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0007' launched from sub-workflow 'CallGenome'
[2026-06-05T03:28:49.345841Z] [nf-25b22bb31b18aab6a1de4e5cbfdc4869-f7acf-m4wn5] [739_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0003' from sub-workflow 'CallGenome'
[2026-06-05T03:28:49.348560Z] [nf-25b22bb31b18aab6a1de4e5cbfdc4869-f7acf-m4wn5] [739_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0003] Task initiated on local node
[2026-06-05T03:28:49.377653Z] [nf-25b22bb31b18aab6a1de4e5cbfdc4869-f7acf-m4wn5] [739_1] [TaskManager] Completed command task: 'CallGenome+fixVcfHeader_chromId_000_chr1_0000' launched from sub-workflow 'CallGenome'
[2026-06-05T03:28:49.378241Z] [nf-25b22bb31b18aab6a1de4e5cbfdc4869-f7acf-m4wn5] [739_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0000' from sub-workflow 'CallGenome'
[2026-06-05T03:28:49.380657Z] [nf-25b22bb31b18aab6a1de4e5cbfdc4869-f7acf-m4wn5] [739_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0000] Task initiated on local node
[2026-06-05T03:28:49.441987Z] [nf-25b22bb31b18aab6a1de4e5cbfdc4869-f7acf-m4wn5] [739_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0000' launched from sub-workflow 'CallGenome'
[2026-06-05T03:28:49.442639Z] [nf-25b22bb31b18aab6a1de4e5cbfdc4869-f7acf-m4wn5] [739_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0002' from sub-workflow 'CallGenome'
[2026-06-05T03:28:49.445171Z] [nf-25b22bb31b18aab6a1de4e5cbfdc4869-f7acf-m4wn5] [739_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0002] Task initiated on local node
[2026-06-05T03:28:50.057248Z] [nf-25b22bb31b18aab6a1de4e5cbfdc4869-f7acf-m4wn5] [739_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0003' launched from sub-workflow 'CallGenome'
[2026-06-05T03:28:50.057900Z] [nf-25b22bb31b18aab6a1de4e5cbfdc4869-f7acf-m4wn5] [739_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0003' from sub-workflow 'CallGenome'
[2026-06-05T03:28:50.060565Z] [nf-25b22bb31b18aab6a1de4e5cbfdc4869-f7acf-m4wn5] [739_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0003] Task initiated on local node
[2026-06-05T03:28:50.089652Z] [nf-25b22bb31b18aab6a1de4e5cbfdc4869-f7acf-m4wn5] [739_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0003' launched from sub-workflow 'CallGenome'
[2026-06-05T03:28:50.090229Z] [nf-25b22bb31b18aab6a1de4e5cbfdc4869-f7acf-m4wn5] [739_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0010' from sub-workflow 'CallGenome'
[2026-06-05T03:28:50.093016Z] [nf-25b22bb31b18aab6a1de4e5cbfdc4869-f7acf-m4wn5] [739_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0010] Task initiated on local node
[2026-06-05T03:28:50.454812Z] [nf-25b22bb31b18aab6a1de4e5cbfdc4869-f7acf-m4wn5] [739_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0013' launched from sub-workflow 'CallGenome'
[2026-06-05T03:28:50.455511Z] [nf-25b22bb31b18aab6a1de4e5cbfdc4869-f7acf-m4wn5] [739_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0013' from sub-workflow 'CallGenome'
[2026-06-05T03:28:50.458069Z] [nf-25b22bb31b18aab6a1de4e5cbfdc4869-f7acf-m4wn5] [739_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0013] Task initiated on local node
[2026-06-05T03:28:50.487186Z] [nf-25b22bb31b18aab6a1de4e5cbfdc4869-f7acf-m4wn5] [739_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0013' launched from sub-workflow 'CallGenome'
[2026-06-05T03:28:50.487724Z] [nf-25b22bb31b18aab6a1de4e5cbfdc4869-f7acf-m4wn5] [739_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0002' from sub-workflow 'CallGenome'
[2026-06-05T03:28:50.490703Z] [nf-25b22bb31b18aab6a1de4e5cbfdc4869-f7acf-m4wn5] [739_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0002] Task initiated on local node
[2026-06-05T03:28:50.601952Z] [nf-25b22bb31b18aab6a1de4e5cbfdc4869-f7acf-m4wn5] [739_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0010' launched from sub-workflow 'CallGenome'
[2026-06-05T03:28:50.602582Z] [nf-25b22bb31b18aab6a1de4e5cbfdc4869-f7acf-m4wn5] [739_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0015' from sub-workflow 'CallGenome'
[2026-06-05T03:28:50.605323Z] [nf-25b22bb31b18aab6a1de4e5cbfdc4869-f7acf-m4wn5] [739_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0015] Task initiated on local node
[2026-06-05T03:28:50.666548Z] [nf-25b22bb31b18aab6a1de4e5cbfdc4869-f7acf-m4wn5] [739_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0006' launched from sub-workflow 'CallGenome'
[2026-06-05T03:28:50.667172Z] [nf-25b22bb31b18aab6a1de4e5cbfdc4869-f7acf-m4wn5] [739_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0020' from sub-workflow 'CallGenome'
[2026-06-05T03:28:50.670015Z] [nf-25b22bb31b18aab6a1de4e5cbfdc4869-f7acf-m4wn5] [739_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0020] Task initiated on local node
[2026-06-05T03:28:50.699105Z] [nf-25b22bb31b18aab6a1de4e5cbfdc4869-f7acf-m4wn5] [739_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0018' launched from sub-workflow 'CallGenome'
[2026-06-05T03:28:50.699701Z] [nf-25b22bb31b18aab6a1de4e5cbfdc4869-f7acf-m4wn5] [739_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0018' from sub-workflow 'CallGenome'
[2026-06-05T03:28:50.702081Z] [nf-25b22bb31b18aab6a1de4e5cbfdc4869-f7acf-m4wn5] [739_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0018] Task initiated on local node
[2026-06-05T03:28:50.731400Z] [nf-25b22bb31b18aab6a1de4e5cbfdc4869-f7acf-m4wn5] [739_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0018' launched from sub-workflow 'CallGenome'
[2026-06-05T03:28:50.731942Z] [nf-25b22bb31b18aab6a1de4e5cbfdc4869-f7acf-m4wn5] [739_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0010' from sub-workflow 'CallGenome'
[2026-06-05T03:28:50.734372Z] [nf-25b22bb31b18aab6a1de4e5cbfdc4869-f7acf-m4wn5] [739_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0010] Task initiated on local node
[2026-06-05T03:28:50.763637Z] [nf-25b22bb31b18aab6a1de4e5cbfdc4869-f7acf-m4wn5] [739_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0010' launched from sub-workflow 'CallGenome'
[2026-06-05T03:28:50.764174Z] [nf-25b22bb31b18aab6a1de4e5cbfdc4869-f7acf-m4wn5] [739_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0004' from sub-workflow 'CallGenome'
[2026-06-05T03:28:50.766724Z] [nf-25b22bb31b18aab6a1de4e5cbfdc4869-f7acf-m4wn5] [739_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0004] Task initiated on local node
[2026-06-05T03:28:51.028285Z] [nf-25b22bb31b18aab6a1de4e5cbfdc4869-f7acf-m4wn5] [739_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0003' launched from sub-workflow 'CallGenome'
[2026-06-05T03:28:51.029144Z] [nf-25b22bb31b18aab6a1de4e5cbfdc4869-f7acf-m4wn5] [739_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0003' from sub-workflow 'CallGenome'
[2026-06-05T03:28:51.029489Z] [nf-25b22bb31b18aab6a1de4e5cbfdc4869-f7acf-m4wn5] [739_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0002' launched from sub-workflow 'CallGenome'
[2026-06-05T03:28:51.030248Z] [nf-25b22bb31b18aab6a1de4e5cbfdc4869-f7acf-m4wn5] [739_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0002' from sub-workflow 'CallGenome'
[2026-06-05T03:28:51.033213Z] [nf-25b22bb31b18aab6a1de4e5cbfdc4869-f7acf-m4wn5] [739_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0005' launched from sub-workflow 'CallGenome'
[2026-06-05T03:28:51.033857Z] [nf-25b22bb31b18aab6a1de4e5cbfdc4869-f7acf-m4wn5] [739_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0003] Task initiated on local node
[2026-06-05T03:28:51.034005Z] [nf-25b22bb31b18aab6a1de4e5cbfdc4869-f7acf-m4wn5] [739_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0002] Task initiated on local node
[2026-06-05T03:28:51.034339Z] [nf-25b22bb31b18aab6a1de4e5cbfdc4869-f7acf-m4wn5] [739_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0005' from sub-workflow 'CallGenome'
[2026-06-05T03:28:51.037214Z] [nf-25b22bb31b18aab6a1de4e5cbfdc4869-f7acf-m4wn5] [739_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0005] Task initiated on local node
[2026-06-05T03:28:51.065989Z] [nf-25b22bb31b18aab6a1de4e5cbfdc4869-f7acf-m4wn5] [739_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0003' launched from sub-workflow 'CallGenome'
[2026-06-05T03:28:51.066044Z] [nf-25b22bb31b18aab6a1de4e5cbfdc4869-f7acf-m4wn5] [739_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0002' launched from sub-workflow 'CallGenome'
[2026-06-05T03:28:51.066069Z] [nf-25b22bb31b18aab6a1de4e5cbfdc4869-f7acf-m4wn5] [739_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0005' launched from sub-workflow 'CallGenome'
[2026-06-05T03:28:51.066513Z] [nf-25b22bb31b18aab6a1de4e5cbfdc4869-f7acf-m4wn5] [739_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0009' from sub-workflow 'CallGenome'
[2026-06-05T03:28:51.066696Z] [nf-25b22bb31b18aab6a1de4e5cbfdc4869-f7acf-m4wn5] [739_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0006' from sub-workflow 'CallGenome'
[2026-06-05T03:28:51.067013Z] [nf-25b22bb31b18aab6a1de4e5cbfdc4869-f7acf-m4wn5] [739_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0008' from sub-workflow 'CallGenome'
[2026-06-05T03:28:51.069894Z] [nf-25b22bb31b18aab6a1de4e5cbfdc4869-f7acf-m4wn5] [739_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0006] Task initiated on local node
[2026-06-05T03:28:51.071026Z] [nf-25b22bb31b18aab6a1de4e5cbfdc4869-f7acf-m4wn5] [739_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0008] Task initiated on local node
[2026-06-05T03:28:51.072020Z] [nf-25b22bb31b18aab6a1de4e5cbfdc4869-f7acf-m4wn5] [739_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0009] Task initiated on local node
[2026-06-05T03:28:51.099400Z] [nf-25b22bb31b18aab6a1de4e5cbfdc4869-f7acf-m4wn5] [739_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0006' launched from sub-workflow 'CallGenome'
[2026-06-05T03:28:51.101093Z] [nf-25b22bb31b18aab6a1de4e5cbfdc4869-f7acf-m4wn5] [739_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0008' launched from sub-workflow 'CallGenome'
[2026-06-05T03:28:51.132710Z] [nf-25b22bb31b18aab6a1de4e5cbfdc4869-f7acf-m4wn5] [739_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0009' launched from sub-workflow 'CallGenome'
[2026-06-05T03:28:51.133081Z] [nf-25b22bb31b18aab6a1de4e5cbfdc4869-f7acf-m4wn5] [739_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0009' from sub-workflow 'CallGenome'
[2026-06-05T03:28:51.135152Z] [nf-25b22bb31b18aab6a1de4e5cbfdc4869-f7acf-m4wn5] [739_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0009] Task initiated on local node
[2026-06-05T03:28:51.164684Z] [nf-25b22bb31b18aab6a1de4e5cbfdc4869-f7acf-m4wn5] [739_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0009' launched from sub-workflow 'CallGenome'
[2026-06-05T03:28:51.180304Z] [nf-25b22bb31b18aab6a1de4e5cbfdc4869-f7acf-m4wn5] [739_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0017' launched from sub-workflow 'CallGenome'
[2026-06-05T03:28:51.180686Z] [nf-25b22bb31b18aab6a1de4e5cbfdc4869-f7acf-m4wn5] [739_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0017' from sub-workflow 'CallGenome'
[2026-06-05T03:28:51.182629Z] [nf-25b22bb31b18aab6a1de4e5cbfdc4869-f7acf-m4wn5] [739_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0017] Task initiated on local node
[2026-06-05T03:28:51.212233Z] [nf-25b22bb31b18aab6a1de4e5cbfdc4869-f7acf-m4wn5] [739_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0017' launched from sub-workflow 'CallGenome'
[2026-06-05T03:28:52.077044Z] [nf-25b22bb31b18aab6a1de4e5cbfdc4869-f7acf-m4wn5] [739_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0015' launched from sub-workflow 'CallGenome'
[2026-06-05T03:28:52.077471Z] [nf-25b22bb31b18aab6a1de4e5cbfdc4869-f7acf-m4wn5] [739_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0015' from sub-workflow 'CallGenome'
[2026-06-05T03:28:52.080215Z] [nf-25b22bb31b18aab6a1de4e5cbfdc4869-f7acf-m4wn5] [739_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0015] Task initiated on local node
[2026-06-05T03:28:52.109276Z] [nf-25b22bb31b18aab6a1de4e5cbfdc4869-f7acf-m4wn5] [739_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0015' launched from sub-workflow 'CallGenome'
[2026-06-05T03:28:52.323292Z] [nf-25b22bb31b18aab6a1de4e5cbfdc4869-f7acf-m4wn5] [739_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0004' launched from sub-workflow 'CallGenome'
[2026-06-05T03:28:52.323363Z] [nf-25b22bb31b18aab6a1de4e5cbfdc4869-f7acf-m4wn5] [739_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0020' launched from sub-workflow 'CallGenome'
[2026-06-05T03:28:52.323783Z] [nf-25b22bb31b18aab6a1de4e5cbfdc4869-f7acf-m4wn5] [739_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0020' from sub-workflow 'CallGenome'
[2026-06-05T03:28:52.324100Z] [nf-25b22bb31b18aab6a1de4e5cbfdc4869-f7acf-m4wn5] [739_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0004' from sub-workflow 'CallGenome'
[2026-06-05T03:28:52.327068Z] [nf-25b22bb31b18aab6a1de4e5cbfdc4869-f7acf-m4wn5] [739_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0020] Task initiated on local node
[2026-06-05T03:28:52.354589Z] [nf-25b22bb31b18aab6a1de4e5cbfdc4869-f7acf-m4wn5] [739_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0004] Task initiated on local node
[2026-06-05T03:28:52.355961Z] [nf-25b22bb31b18aab6a1de4e5cbfdc4869-f7acf-m4wn5] [739_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0020' launched from sub-workflow 'CallGenome'
[2026-06-05T03:28:52.356003Z] [nf-25b22bb31b18aab6a1de4e5cbfdc4869-f7acf-m4wn5] [739_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0004' launched from sub-workflow 'CallGenome'
[2026-06-05T03:28:52.870346Z] [nf-25b22bb31b18aab6a1de4e5cbfdc4869-f7acf-m4wn5] [739_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0002' launched from sub-workflow 'CallGenome'
[2026-06-05T03:28:52.870712Z] [nf-25b22bb31b18aab6a1de4e5cbfdc4869-f7acf-m4wn5] [739_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0002' from sub-workflow 'CallGenome'
[2026-06-05T03:28:52.873062Z] [nf-25b22bb31b18aab6a1de4e5cbfdc4869-f7acf-m4wn5] [739_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0002] Task initiated on local node
[2026-06-05T03:28:52.902415Z] [nf-25b22bb31b18aab6a1de4e5cbfdc4869-f7acf-m4wn5] [739_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0002' launched from sub-workflow 'CallGenome'
[2026-06-05T03:28:52.902673Z] [nf-25b22bb31b18aab6a1de4e5cbfdc4869-f7acf-m4wn5] [739_1] [TaskManager] Completed command task: 'CallGenome+completedAllGenomeSegments' launched from sub-workflow 'CallGenome'
[2026-06-05T03:28:52.902797Z] [nf-25b22bb31b18aab6a1de4e5cbfdc4869-f7acf-m4wn5] [739_1] [TaskManager] Launching command task: 'CallGenome+Indel_concat_vcf' from sub-workflow 'CallGenome'
[2026-06-05T03:28:52.903020Z] [nf-25b22bb31b18aab6a1de4e5cbfdc4869-f7acf-m4wn5] [739_1] [TaskManager] Launching command task: 'CallGenome+SNV_concat_vcf' from sub-workflow 'CallGenome'
[2026-06-05T03:28:52.903326Z] [nf-25b22bb31b18aab6a1de4e5cbfdc4869-f7acf-m4wn5] [739_1] [TaskManager] Launching command task: 'CallGenome+mergeRunStats' from sub-workflow 'CallGenome'
[2026-06-05T03:28:52.906739Z] [nf-25b22bb31b18aab6a1de4e5cbfdc4869-f7acf-m4wn5] [739_1] [TaskRunner:CallGenome+Indel_concat_vcf] Task initiated on local node
[2026-06-05T03:28:52.908029Z] [nf-25b22bb31b18aab6a1de4e5cbfdc4869-f7acf-m4wn5] [739_1] [TaskRunner:CallGenome+SNV_concat_vcf] Task initiated on local node
[2026-06-05T03:28:52.909094Z] [nf-25b22bb31b18aab6a1de4e5cbfdc4869-f7acf-m4wn5] [739_1] [TaskRunner:CallGenome+mergeRunStats] Task initiated on local node
[2026-06-05T03:28:52.936034Z] [nf-25b22bb31b18aab6a1de4e5cbfdc4869-f7acf-m4wn5] [739_1] [TaskManager] Completed command task: 'CallGenome+SNV_concat_vcf' launched from sub-workflow 'CallGenome'
[2026-06-05T03:28:52.936071Z] [nf-25b22bb31b18aab6a1de4e5cbfdc4869-f7acf-m4wn5] [739_1] [TaskManager] Completed command task: 'CallGenome+Indel_concat_vcf' launched from sub-workflow 'CallGenome'
[2026-06-05T03:28:52.936095Z] [nf-25b22bb31b18aab6a1de4e5cbfdc4869-f7acf-m4wn5] [739_1] [TaskManager] Completed command task: 'CallGenome+mergeRunStats' launched from sub-workflow 'CallGenome'
[2026-06-05T03:28:52.936272Z] [nf-25b22bb31b18aab6a1de4e5cbfdc4869-f7acf-m4wn5] [739_1] [TaskManager] Launching command task: 'CallGenome+Indel_index_vcf' from sub-workflow 'CallGenome'
[2026-06-05T03:28:52.936571Z] [nf-25b22bb31b18aab6a1de4e5cbfdc4869-f7acf-m4wn5] [739_1] [TaskManager] Launching command task: 'CallGenome+SNV_index_vcf' from sub-workflow 'CallGenome'
[2026-06-05T03:28:52.939429Z] [nf-25b22bb31b18aab6a1de4e5cbfdc4869-f7acf-m4wn5] [739_1] [TaskRunner:CallGenome+Indel_index_vcf] Task initiated on local node
[2026-06-05T03:28:52.940082Z] [nf-25b22bb31b18aab6a1de4e5cbfdc4869-f7acf-m4wn5] [739_1] [TaskRunner:CallGenome+SNV_index_vcf] Task initiated on local node
[2026-06-05T03:28:52.968357Z] [nf-25b22bb31b18aab6a1de4e5cbfdc4869-f7acf-m4wn5] [739_1] [TaskManager] Completed command task: 'CallGenome+Indel_index_vcf' launched from sub-workflow 'CallGenome'
[2026-06-05T03:28:52.968405Z] [nf-25b22bb31b18aab6a1de4e5cbfdc4869-f7acf-m4wn5] [739_1] [TaskManager] Completed command task: 'CallGenome+SNV_index_vcf' launched from sub-workflow 'CallGenome'
[2026-06-05T03:28:52.968595Z] [nf-25b22bb31b18aab6a1de4e5cbfdc4869-f7acf-m4wn5] [739_1] [TaskManager] Launching command task: 'CallGenome+removeTmpDir' from sub-workflow 'CallGenome'
[2026-06-05T03:28:52.970762Z] [nf-25b22bb31b18aab6a1de4e5cbfdc4869-f7acf-m4wn5] [739_1] [TaskRunner:CallGenome+removeTmpDir] Task initiated on local node
[2026-06-05T03:28:53.000342Z] [nf-25b22bb31b18aab6a1de4e5cbfdc4869-f7acf-m4wn5] [739_1] [TaskManager] Completed command task: 'CallGenome+removeTmpDir' launched from sub-workflow 'CallGenome'
[2026-06-05T03:28:55.517215Z] [nf-25b22bb31b18aab6a1de4e5cbfdc4869-f7acf-m4wn5] [739_1] [TaskManager] Completed sub-workflow task: 'CallGenome' launched from master workflow
[2026-06-05T03:29:03.777699Z] [nf-25b22bb31b18aab6a1de4e5cbfdc4869-f7acf-m4wn5] [739_1] [WorkflowRunner] Strelka somatic workflow successfully completed.
[2026-06-05T03:29:03.777699Z] [nf-25b22bb31b18aab6a1de4e5cbfdc4869-f7acf-m4wn5] [739_1] [WorkflowRunner] 
[2026-06-05T03:29:03.777699Z] [nf-25b22bb31b18aab6a1de4e5cbfdc4869-f7acf-m4wn5] [739_1] [WorkflowRunner] 	workflow version: 2.9.10
[2026-06-05T03:29:03.777744Z] [nf-25b22bb31b18aab6a1de4e5cbfdc4869-f7acf-m4wn5] [739_1] [WorkflowRunner] 
[2026-06-05T03:29:03.777752Z] [nf-25b22bb31b18aab6a1de4e5cbfdc4869-f7acf-m4wn5] [739_1] [WorkflowRunner] Workflow successfully completed all tasks
[2026-06-05T03:29:03.777761Z] [nf-25b22bb31b18aab6a1de4e5cbfdc4869-f7acf-m4wn5] [739_1] [WorkflowRunner] Elapsed time for full workflow: 18 sec