Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/fb/2a76610d309579f5160531f647088a/counts_1.parquet
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/fb/2a76610d309579f5160531f647088a/ploidy_1.parquet
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/5f/7b21e6b3d5296dfad38952efcc4e3e/clustered_panel.csv
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/fb/2a76610d309579f5160531f647088a/sample_metrics_1.parquet
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/29/ec3b7baa7dfde734639638e00ea69b/.command.run
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/29/ec3b7baa7dfde734639638e00ea69b/.command.sh
==> STAGING COMPLETE (6 inputs)

mkdir -p failed for path /.config/matplotlib: [Errno 13] Permission denied: '/.config'
Matplotlib created a temporary cache directory at /tmp/matplotlib-m4_9tx4g because there was an issue with the default path (/.config/matplotlib); it is highly recommended to set the MPLCONFIGDIR environment variable to a writable directory, in particular to speed up the import of Matplotlib and to better support multiprocessing.
2026-06-05 14:03:20,294 - cnv_pipe.batch.jax_config - INFO - Setting JAX backend to 'cpu'
2026-06-05 14:03:21,142 - cnv_pipe.batch.run_model - INFO - JAX devices = [CpuDevice(id=0)]
2026-06-05 14:03:21,314 - cnv_pipe.batch.run_model - INFO - Loading counts from counts_1.parquet
2026-06-05 14:03:22,269 - cnv_pipe.batch.run_model - INFO - Loaded data with 4 samples
2026-06-05 14:03:22,419 - cnv_pipe.batch.run_model - INFO - Processing cluster 538 with 174 probes
2026-06-05 14:03:22,803 - cnv_pipe.batch.run_model.cluster538 - INFO - Child process started for cluster 538 with 174 probes
2026-06-05 14:04:16,905 - cnv_pipe.batch.run_model.cluster538 - INFO - Child process finished cluster 538. Wrote cluster_538_samples.csv and cluster_538_params.csv
2026-06-05 14:04:16,906 - cnv_pipe.batch.run_model - INFO - Cluster 538 finished in 54.49 seconds. Status: SUCCESS