File Info

Filename
output/Logs/Info.log
Full Path
s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/77/a170f9787852f253579d1b9088aba7/output/Logs/Info.log
Size
3.3 KB
Attempt
2026-06-05T13:47:38Z thread 388 Sample sheet being processed by common lib? Yes
2026-06-05T13:47:38Z thread 388 SampleSheet Settings: 
2026-06-05T13:47:38Z thread 388   OverrideCycles = Y150;I8;I8;Y150
2026-06-05T13:47:38Z thread 388 
2026-06-05T13:47:38Z thread 388 shared-thread-linux-native-asio output is disabled
2026-06-05T13:47:38Z thread 388 bcl-convert Version 4.4.6
2026-06-05T13:47:38Z thread 388 Copyright (c) 2014-2025 Illumina, Inc.
2026-06-05T13:47:38Z thread 388 Command Line: --tiles s_4 --output-directory output --bcl-input-directory rundir --sample-sheet rundir/SampleSheet.csv 
2026-06-05T13:47:38Z thread 388 Conversion Begins.
2026-06-05T13:47:38Z thread 388 Input BCL Information:
2026-06-05T13:47:38Z thread 388     Read Structure: 2026-06-05T13:47:38Z thread 388 Y1502026-06-05T13:47:38Z thread 388 ;2026-06-05T13:47:38Z thread 388 I82026-06-05T13:47:38Z thread 388 ;2026-06-05T13:47:38Z thread 388 I82026-06-05T13:47:38Z thread 388 ;2026-06-05T13:47:38Z thread 388 Y1502026-06-05T13:47:38Z thread 388 
2026-06-05T13:47:38Z thread 388     RunInfo.xml file lists: 8 lanes, 8 tiles
2026-06-05T13:47:38Z thread 388     BCL file format: bcl.gz
2026-06-05T13:47:38Z thread 388     Positions file format: locs
2026-06-05T13:47:38Z thread 388     Filter file format: filter
2026-06-05T13:47:38Z thread 388 Conversion Information:
2026-06-05T13:47:38Z thread 388     Tile filtering: converting 1/8 tiles
2026-06-05T13:47:38Z thread 388     Lane 1 will be skipped because there are no tiles to convert (not listed in RunInfo.xml tile list?)
2026-06-05T13:47:38Z thread 388     Lane 2 will be skipped because there are no tiles to convert (not listed in RunInfo.xml tile list?)
2026-06-05T13:47:38Z thread 388     Lane 3 will be skipped because there are no tiles to convert (not listed in RunInfo.xml tile list?)
2026-06-05T13:47:38Z thread 388     Lane 5 will be skipped because there are no tiles to convert (not listed in RunInfo.xml tile list?)
2026-06-05T13:47:38Z thread 388     Lane 6 will be skipped because there are no tiles to convert (not listed in RunInfo.xml tile list?)
2026-06-05T13:47:38Z thread 388     Lane 7 will be skipped because there are no tiles to convert (not listed in RunInfo.xml tile list?)
2026-06-05T13:47:38Z thread 388     Lane 8 will be skipped because there are no tiles to convert (not listed in RunInfo.xml tile list?)
2026-06-05T13:47:38Z thread 388     Sample Count: 4
2026-06-05T13:47:38Z thread 388     Expected number of sample FASTQ files to be created: 8
2026-06-05T13:47:38Z thread 388 # CPU hw threads available: 64
2026-06-05T13:47:38Z thread 388 Parallel Tiles: 4. Threads Per Tile: 16
2026-06-05T13:47:38Z thread 388 SW compressors: 64
2026-06-05T13:47:38Z thread 388 SW decompressors: 32
2026-06-05T13:47:38Z thread 388 SW FASTQ compression level: 1
2026-06-05T13:47:38Z thread 388 Lane 4 Post-run Information:
2026-06-05T13:47:38Z thread 388     Total clusters: 250000
2026-06-05T13:47:38Z thread 388     Total Genomic Reads: 500000
2026-06-05T13:47:38Z thread 388     Total Genomic Input Gigabases 0.08
2026-06-05T13:47:38Z thread 388     Minimum reads for a sample: 124566
2026-06-05T13:47:38Z thread 388     Maximum reads for a sample: 125346
2026-06-05T13:47:38Z thread 388     Average reads per sample: 125000.00
2026-06-05T13:47:38Z thread 388     Undetermined reads: 0
2026-06-05T13:47:38Z thread 388 Conversion Complete.