cmdline: /opt/conda/share/sentieon-202308.03-3/libexec/driver -t 31 -r Homo_sapiens_assembly38.fasta -i HCC1395_tumor.md.bam --algo AlignmentStat HCC1395_tumor.sentieon.alignment_summary_metrics --algo InsertSizeMetricAlgo HCC1395_tumor.sentieon.insert_size_metrics --algo QualDistribution HCC1395_tumor.sentieon.quality_distribution_metrics --algo BaseDistributionByCycle HCC1395_tumor.sentieon.base_distribution_by_cycle_metrics --algo MeanQualityByCycle HCC1395_tumor.sentieon.quality_by_cycle_metrics
This software is licensed to bgold@natera.com by Sentieon Inc.
progress 5% @chr1:160000001, elapsed 0.0s, est remaining 0.5s, peak mem 81MB, user 0.1s, sys 0.4s, output queue size 20
progress 10% @chr2:74000001, elapsed 0.0s, est remaining 0.4s, peak mem 81MB, user 0.2s, sys 0.9s, output queue size 7
progress 15% @chr2:235000001, elapsed 0.1s, est remaining 0.4s, peak mem 81MB, user 0.2s, sys 1.5s, output queue size 17
progress 20% @chr3:152000001, elapsed 0.1s, est remaining 0.3s, peak mem 81MB, user 0.3s, sys 2.0s, output queue size 3
progress 25% @chr4:115000001, elapsed 0.1s, est remaining 0.3s, peak mem 81MB, user 0.5s, sys 2.5s, output queue size 2
progress 30% @chr5:85000001, elapsed 0.1s, est remaining 0.3s, peak mem 81MB, user 0.5s, sys 3.0s, output queue size 9
progress 35% @chr6:68000001, elapsed 0.1s, est remaining 0.3s, peak mem 81MB, user 0.6s, sys 3.5s, output queue size 14
progress 40% @chr7:58000001, elapsed 0.2s, est remaining 0.2s, peak mem 81MB, user 0.6s, sys 4.0s, output queue size 11
progress 45% @chr8:59000001, elapsed 0.2s, est remaining 0.2s, peak mem 81MB, user 0.8s, sys 4.5s, output queue size 19
progress 50% @chr9:75000001, elapsed 0.2s, est remaining 0.2s, peak mem 81MB, user 0.9s, sys 5.1s, output queue size 10
progress 55% @chr10:96000001, elapsed 0.2s, est remaining 0.2s, peak mem 81MB, user 1.0s, sys 5.5s, output queue size 13
progress 60% @chr11:124000001, elapsed 0.2s, est remaining 0.2s, peak mem 81MB, user 1.1s, sys 6.1s, output queue size 19
progress 65% @chr13:19000001, elapsed 0.3s, est remaining 0.1s, peak mem 81MB, user 1.1s, sys 6.6s, output queue size 21
progress 70% @chr14:62000001, elapsed 0.3s, est remaining 0.1s, peak mem 81MB, user 1.2s, sys 7.1s, output queue size 23
progress 75% @chr16:10000001, elapsed 0.3s, est remaining 0.1s, peak mem 81MB, user 1.3s, sys 7.6s, output queue size 3
progress 80% @chr18:1, elapsed 0.3s, est remaining 0.1s, peak mem 81MB, user 1.4s, sys 8.1s, output queue size 2
progress 85% @chr20:21000001, elapsed 0.3s, est remaining 0.1s, peak mem 81MB, user 1.5s, sys 8.6s, output queue size 9
progress 90% @chrX:43000001, elapsed 0.4s, est remaining 0.0s, peak mem 93MB, user 2.0s, sys 8.7s, output queue size 114
progress 95% @chrY:40000001, elapsed 0.4s, est remaining 0.0s, peak mem 108MB, user 2.5s, sys 9.0s, output queue size 276
progress 100% @chr21:41000001, elapsed 1.1s, est remaining 0.0s, peak mem 132MB, user 5.6s, sys 9.5s, output queue size 3664
sw version: sentieon-genomics-202308.03
os version: Linux 6.12.88
cpu vendor: GenuineIntel
 signature: 000a06d1
  features: bfebfbff 7ffefbff
  extended: f3bfb7ef fb417ffe
  amd bits: 2c100800 00000121
     brand: Intel(R) Xeon(R) 6975P-C
threads: 31 max 384
algo: AlignmentStat InsertSizeMetricAlgo QualDistribution BaseDistributionByCycle MeanQualityByCycle
license: sentieon:Metrics=31
input file size: 50813900
reads: 1001320
contig: 3367 intervals 3217346917 bases
advance: 3219322 calls 1.255 user 4.952 sys 6.295 real
done: 1 calls 0.000 user 0.000 sys 0.001 real
exec_no_coor: 1 calls 0.000 user 0.000 sys 0.000 real
execute: 1 calls 0.009 user 0.001 sys 1.128 real
idle: 73 calls 0.029 user 0.033 sys 49.725 real
init: 1 calls 0.000 user 0.000 sys 0.000 real
overall: 138567680 mem 5.800 user 10.019 sys 2.178 real