File Info

Filename
.command.err
Full Path
s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/0f/7221e1d227c1925a0ea3264828db87/.command.err
Size
85.8 KB
Task
DAQ:CONTROL_VARIANT_CALLING:CONTROL_SOMATIC_VC:BAM_VARIANT_CALLING_SOMATIC_STRELKA:STRELKA_SOMATIC (negative_somatic_control_2;chr4_22420786-22421189.bed)
Attempt

Content

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[2026-06-05T14:00:07.541015Z] [nf-0f7221e1d227c1925a0ea3264828db87-8e4ce-lktzn] [697_1] [WorkflowRunner] Initiating pyFlow run
[2026-06-05T14:00:07.542431Z] [nf-0f7221e1d227c1925a0ea3264828db87-8e4ce-lktzn] [697_1] [WorkflowRunner] pyFlowClientWorkflowClass: StrelkaSomaticWorkflow
[2026-06-05T14:00:07.542447Z] [nf-0f7221e1d227c1925a0ea3264828db87-8e4ce-lktzn] [697_1] [WorkflowRunner] pyFlowVersion: 1.1.20
[2026-06-05T14:00:07.542452Z] [nf-0f7221e1d227c1925a0ea3264828db87-8e4ce-lktzn] [697_1] [WorkflowRunner] pythonVersion: 2.7.15.final.0
[2026-06-05T14:00:07.542456Z] [nf-0f7221e1d227c1925a0ea3264828db87-8e4ce-lktzn] [697_1] [WorkflowRunner] WorkingDir: '/tmp/nxf.XXXX4CwOvD'
[2026-06-05T14:00:07.542460Z] [nf-0f7221e1d227c1925a0ea3264828db87-8e4ce-lktzn] [697_1] [WorkflowRunner] ProcessCmdLine: '/var/tmp/strelka/runWorkflow.py -m local -j 8'
[2026-06-05T14:00:07.542466Z] [nf-0f7221e1d227c1925a0ea3264828db87-8e4ce-lktzn] [697_1] [WorkflowRunner] [RunParameters] mode: local
[2026-06-05T14:00:07.542470Z] [nf-0f7221e1d227c1925a0ea3264828db87-8e4ce-lktzn] [697_1] [WorkflowRunner] [RunParameters] nCores: 8
[2026-06-05T14:00:07.542474Z] [nf-0f7221e1d227c1925a0ea3264828db87-8e4ce-lktzn] [697_1] [WorkflowRunner] [RunParameters] memMb: 3047507
[2026-06-05T14:00:07.542477Z] [nf-0f7221e1d227c1925a0ea3264828db87-8e4ce-lktzn] [697_1] [WorkflowRunner] [RunParameters] dataDir: /var/tmp/strelka/workspace/pyflow.data
[2026-06-05T14:00:07.542481Z] [nf-0f7221e1d227c1925a0ea3264828db87-8e4ce-lktzn] [697_1] [WorkflowRunner] [RunParameters] isDryRun: False
[2026-06-05T14:00:07.542485Z] [nf-0f7221e1d227c1925a0ea3264828db87-8e4ce-lktzn] [697_1] [WorkflowRunner] [RunParameters] isContinue: False
[2026-06-05T14:00:07.542489Z] [nf-0f7221e1d227c1925a0ea3264828db87-8e4ce-lktzn] [697_1] [WorkflowRunner] [RunParameters] isForceContinue: True
[2026-06-05T14:00:07.542493Z] [nf-0f7221e1d227c1925a0ea3264828db87-8e4ce-lktzn] [697_1] [WorkflowRunner] [RunParameters] mailTo: ''
[2026-06-05T14:00:07.543274Z] [nf-0f7221e1d227c1925a0ea3264828db87-8e4ce-lktzn] [697_1] [TaskRunner:masterWorkflow] Starting task specification for master workflow
[2026-06-05T14:00:07.543391Z] [nf-0f7221e1d227c1925a0ea3264828db87-8e4ce-lktzn] [697_1] [StrelkaSomaticWorkflow] Initiating Strelka somatic workflow version: 2.9.10
[2026-06-05T14:00:07.549589Z] [nf-0f7221e1d227c1925a0ea3264828db87-8e4ce-lktzn] [697_1] [WorkflowRunner] Adding sub-workflow task 'CallGenome' to master workflow
[2026-06-05T14:00:07.550310Z] [nf-0f7221e1d227c1925a0ea3264828db87-8e4ce-lktzn] [697_1] [TaskRunner:masterWorkflow] Finished task specification for master workflow
[2026-06-05T14:00:07.550598Z] [nf-0f7221e1d227c1925a0ea3264828db87-8e4ce-lktzn] [697_1] [TaskManager] Launching sub-workflow task: 'CallGenome' from master workflow
[2026-06-05T14:00:07.550951Z] [nf-0f7221e1d227c1925a0ea3264828db87-8e4ce-lktzn] [697_1] [TaskRunner:CallGenome] Starting task specification for sub-workflow
[2026-06-05T14:00:07.551209Z] [nf-0f7221e1d227c1925a0ea3264828db87-8e4ce-lktzn] [697_1] [WorkflowRunner] Adding command task 'CallGenome+makeTmpDir' to sub-workflow 'CallGenome'
[2026-06-05T14:00:07.552446Z] [nf-0f7221e1d227c1925a0ea3264828db87-8e4ce-lktzn] [697_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_003_chr4_0000' to sub-workflow 'CallGenome'
[2026-06-05T14:00:07.552582Z] [nf-0f7221e1d227c1925a0ea3264828db87-8e4ce-lktzn] [697_1] [TaskManager] Launching command task: 'CallGenome+makeTmpDir' from sub-workflow 'CallGenome'
[2026-06-05T14:00:07.552907Z] [nf-0f7221e1d227c1925a0ea3264828db87-8e4ce-lktzn] [697_1] [WorkflowRunner] Adding command task 'CallGenome+fixVcfHeader_chromId_003_chr4_0000' to sub-workflow 'CallGenome'
[2026-06-05T14:00:07.553091Z] [nf-0f7221e1d227c1925a0ea3264828db87-8e4ce-lktzn] [697_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_003_chr4_0000' to sub-workflow 'CallGenome'
[2026-06-05T14:00:07.553631Z] [nf-0f7221e1d227c1925a0ea3264828db87-8e4ce-lktzn] [697_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_003_chr4_0001' to sub-workflow 'CallGenome'
[2026-06-05T14:00:07.554198Z] [nf-0f7221e1d227c1925a0ea3264828db87-8e4ce-lktzn] [697_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_003_chr4_0001' to sub-workflow 'CallGenome'
[2026-06-05T14:00:07.554476Z] [nf-0f7221e1d227c1925a0ea3264828db87-8e4ce-lktzn] [697_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_003_chr4_0002' to sub-workflow 'CallGenome'
[2026-06-05T14:00:07.556558Z] [nf-0f7221e1d227c1925a0ea3264828db87-8e4ce-lktzn] [697_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_003_chr4_0002' to sub-workflow 'CallGenome'
[2026-06-05T14:00:07.556876Z] [nf-0f7221e1d227c1925a0ea3264828db87-8e4ce-lktzn] [697_1] [TaskRunner:CallGenome+makeTmpDir] Task initiated on local node
[2026-06-05T14:00:07.557508Z] [nf-0f7221e1d227c1925a0ea3264828db87-8e4ce-lktzn] [697_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_003_chr4_0003' to sub-workflow 'CallGenome'
[2026-06-05T14:00:07.557717Z] [nf-0f7221e1d227c1925a0ea3264828db87-8e4ce-lktzn] [697_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_003_chr4_0003' to sub-workflow 'CallGenome'
[2026-06-05T14:00:07.558118Z] [nf-0f7221e1d227c1925a0ea3264828db87-8e4ce-lktzn] [697_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_003_chr4_0004' to sub-workflow 'CallGenome'
[2026-06-05T14:00:07.558219Z] [nf-0f7221e1d227c1925a0ea3264828db87-8e4ce-lktzn] [697_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_003_chr4_0004' to sub-workflow 'CallGenome'
[2026-06-05T14:00:07.558363Z] [nf-0f7221e1d227c1925a0ea3264828db87-8e4ce-lktzn] [697_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_003_chr4_0005' to sub-workflow 'CallGenome'
[2026-06-05T14:00:07.558434Z] [nf-0f7221e1d227c1925a0ea3264828db87-8e4ce-lktzn] [697_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_003_chr4_0005' to sub-workflow 'CallGenome'
[2026-06-05T14:00:07.558548Z] [nf-0f7221e1d227c1925a0ea3264828db87-8e4ce-lktzn] [697_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_003_chr4_0006' to sub-workflow 'CallGenome'
[2026-06-05T14:00:07.558664Z] [nf-0f7221e1d227c1925a0ea3264828db87-8e4ce-lktzn] [697_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_003_chr4_0006' to sub-workflow 'CallGenome'
[2026-06-05T14:00:07.558790Z] [nf-0f7221e1d227c1925a0ea3264828db87-8e4ce-lktzn] [697_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_003_chr4_0007' to sub-workflow 'CallGenome'
[2026-06-05T14:00:07.558853Z] [nf-0f7221e1d227c1925a0ea3264828db87-8e4ce-lktzn] [697_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_003_chr4_0007' to sub-workflow 'CallGenome'
[2026-06-05T14:00:07.559264Z] [nf-0f7221e1d227c1925a0ea3264828db87-8e4ce-lktzn] [697_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_003_chr4_0008' to sub-workflow 'CallGenome'
[2026-06-05T14:00:07.559573Z] [nf-0f7221e1d227c1925a0ea3264828db87-8e4ce-lktzn] [697_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_003_chr4_0008' to sub-workflow 'CallGenome'
[2026-06-05T14:00:07.559690Z] [nf-0f7221e1d227c1925a0ea3264828db87-8e4ce-lktzn] [697_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_003_chr4_0009' to sub-workflow 'CallGenome'
[2026-06-05T14:00:07.559758Z] [nf-0f7221e1d227c1925a0ea3264828db87-8e4ce-lktzn] [697_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_003_chr4_0009' to sub-workflow 'CallGenome'
[2026-06-05T14:00:07.559870Z] [nf-0f7221e1d227c1925a0ea3264828db87-8e4ce-lktzn] [697_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_003_chr4_0010' to sub-workflow 'CallGenome'
[2026-06-05T14:00:07.559932Z] [nf-0f7221e1d227c1925a0ea3264828db87-8e4ce-lktzn] [697_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_003_chr4_0010' to sub-workflow 'CallGenome'
[2026-06-05T14:00:07.560056Z] [nf-0f7221e1d227c1925a0ea3264828db87-8e4ce-lktzn] [697_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_003_chr4_0011' to sub-workflow 'CallGenome'
[2026-06-05T14:00:07.560120Z] [nf-0f7221e1d227c1925a0ea3264828db87-8e4ce-lktzn] [697_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_003_chr4_0011' to sub-workflow 'CallGenome'
[2026-06-05T14:00:07.560230Z] [nf-0f7221e1d227c1925a0ea3264828db87-8e4ce-lktzn] [697_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_003_chr4_0012' to sub-workflow 'CallGenome'
[2026-06-05T14:00:07.560298Z] [nf-0f7221e1d227c1925a0ea3264828db87-8e4ce-lktzn] [697_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_003_chr4_0012' to sub-workflow 'CallGenome'
[2026-06-05T14:00:07.560409Z] [nf-0f7221e1d227c1925a0ea3264828db87-8e4ce-lktzn] [697_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_003_chr4_0013' to sub-workflow 'CallGenome'
[2026-06-05T14:00:07.560477Z] [nf-0f7221e1d227c1925a0ea3264828db87-8e4ce-lktzn] [697_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_003_chr4_0013' to sub-workflow 'CallGenome'
[2026-06-05T14:00:07.560664Z] [nf-0f7221e1d227c1925a0ea3264828db87-8e4ce-lktzn] [697_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_003_chr4_0014' to sub-workflow 'CallGenome'
[2026-06-05T14:00:07.560833Z] [nf-0f7221e1d227c1925a0ea3264828db87-8e4ce-lktzn] [697_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_003_chr4_0014' to sub-workflow 'CallGenome'
[2026-06-05T14:00:07.561535Z] [nf-0f7221e1d227c1925a0ea3264828db87-8e4ce-lktzn] [697_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_003_chr4_0015' to sub-workflow 'CallGenome'
[2026-06-05T14:00:07.561844Z] [nf-0f7221e1d227c1925a0ea3264828db87-8e4ce-lktzn] [697_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_003_chr4_0015' to sub-workflow 'CallGenome'
[2026-06-05T14:00:07.561958Z] [nf-0f7221e1d227c1925a0ea3264828db87-8e4ce-lktzn] [697_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_004_chr5_0000' to sub-workflow 'CallGenome'
[2026-06-05T14:00:07.562023Z] [nf-0f7221e1d227c1925a0ea3264828db87-8e4ce-lktzn] [697_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_004_chr5_0000' to sub-workflow 'CallGenome'
[2026-06-05T14:00:07.562134Z] [nf-0f7221e1d227c1925a0ea3264828db87-8e4ce-lktzn] [697_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_004_chr5_0001' to sub-workflow 'CallGenome'
[2026-06-05T14:00:07.562206Z] [nf-0f7221e1d227c1925a0ea3264828db87-8e4ce-lktzn] [697_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_004_chr5_0001' to sub-workflow 'CallGenome'
[2026-06-05T14:00:07.562317Z] [nf-0f7221e1d227c1925a0ea3264828db87-8e4ce-lktzn] [697_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_004_chr5_0002' to sub-workflow 'CallGenome'
[2026-06-05T14:00:07.562379Z] [nf-0f7221e1d227c1925a0ea3264828db87-8e4ce-lktzn] [697_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_004_chr5_0002' to sub-workflow 'CallGenome'
[2026-06-05T14:00:07.562491Z] [nf-0f7221e1d227c1925a0ea3264828db87-8e4ce-lktzn] [697_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_004_chr5_0003' to sub-workflow 'CallGenome'
[2026-06-05T14:00:07.562555Z] [nf-0f7221e1d227c1925a0ea3264828db87-8e4ce-lktzn] [697_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_004_chr5_0003' to sub-workflow 'CallGenome'
[2026-06-05T14:00:07.562664Z] [nf-0f7221e1d227c1925a0ea3264828db87-8e4ce-lktzn] [697_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_004_chr5_0004' to sub-workflow 'CallGenome'
[2026-06-05T14:00:07.562730Z] [nf-0f7221e1d227c1925a0ea3264828db87-8e4ce-lktzn] [697_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_004_chr5_0004' to sub-workflow 'CallGenome'
[2026-06-05T14:00:07.562844Z] [nf-0f7221e1d227c1925a0ea3264828db87-8e4ce-lktzn] [697_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_004_chr5_0005' to sub-workflow 'CallGenome'
[2026-06-05T14:00:07.563128Z] [nf-0f7221e1d227c1925a0ea3264828db87-8e4ce-lktzn] [697_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_004_chr5_0005' to sub-workflow 'CallGenome'
[2026-06-05T14:00:07.563503Z] [nf-0f7221e1d227c1925a0ea3264828db87-8e4ce-lktzn] [697_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_004_chr5_0006' to sub-workflow 'CallGenome'
[2026-06-05T14:00:07.564036Z] [nf-0f7221e1d227c1925a0ea3264828db87-8e4ce-lktzn] [697_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_004_chr5_0006' to sub-workflow 'CallGenome'
[2026-06-05T14:00:07.564532Z] [nf-0f7221e1d227c1925a0ea3264828db87-8e4ce-lktzn] [697_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_004_chr5_0007' to sub-workflow 'CallGenome'
[2026-06-05T14:00:07.564629Z] [nf-0f7221e1d227c1925a0ea3264828db87-8e4ce-lktzn] [697_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_004_chr5_0007' to sub-workflow 'CallGenome'
[2026-06-05T14:00:07.564785Z] [nf-0f7221e1d227c1925a0ea3264828db87-8e4ce-lktzn] [697_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_004_chr5_0008' to sub-workflow 'CallGenome'
[2026-06-05T14:00:07.564873Z] [nf-0f7221e1d227c1925a0ea3264828db87-8e4ce-lktzn] [697_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_004_chr5_0008' to sub-workflow 'CallGenome'
[2026-06-05T14:00:07.565025Z] [nf-0f7221e1d227c1925a0ea3264828db87-8e4ce-lktzn] [697_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_004_chr5_0009' to sub-workflow 'CallGenome'
[2026-06-05T14:00:07.565113Z] [nf-0f7221e1d227c1925a0ea3264828db87-8e4ce-lktzn] [697_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_004_chr5_0009' to sub-workflow 'CallGenome'
[2026-06-05T14:00:07.565274Z] [nf-0f7221e1d227c1925a0ea3264828db87-8e4ce-lktzn] [697_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_004_chr5_0010' to sub-workflow 'CallGenome'
[2026-06-05T14:00:07.565396Z] [nf-0f7221e1d227c1925a0ea3264828db87-8e4ce-lktzn] [697_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_004_chr5_0010' to sub-workflow 'CallGenome'
[2026-06-05T14:00:07.565775Z] [nf-0f7221e1d227c1925a0ea3264828db87-8e4ce-lktzn] [697_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_004_chr5_0011' to sub-workflow 'CallGenome'
[2026-06-05T14:00:07.566247Z] [nf-0f7221e1d227c1925a0ea3264828db87-8e4ce-lktzn] [697_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_004_chr5_0011' to sub-workflow 'CallGenome'
[2026-06-05T14:00:07.566889Z] [nf-0f7221e1d227c1925a0ea3264828db87-8e4ce-lktzn] [697_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_004_chr5_0012' to sub-workflow 'CallGenome'
[2026-06-05T14:00:07.567377Z] [nf-0f7221e1d227c1925a0ea3264828db87-8e4ce-lktzn] [697_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_004_chr5_0012' to sub-workflow 'CallGenome'
[2026-06-05T14:00:07.567511Z] [nf-0f7221e1d227c1925a0ea3264828db87-8e4ce-lktzn] [697_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_004_chr5_0013' to sub-workflow 'CallGenome'
[2026-06-05T14:00:07.567582Z] [nf-0f7221e1d227c1925a0ea3264828db87-8e4ce-lktzn] [697_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_004_chr5_0013' to sub-workflow 'CallGenome'
[2026-06-05T14:00:07.567699Z] [nf-0f7221e1d227c1925a0ea3264828db87-8e4ce-lktzn] [697_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_004_chr5_0014' to sub-workflow 'CallGenome'
[2026-06-05T14:00:07.567772Z] [nf-0f7221e1d227c1925a0ea3264828db87-8e4ce-lktzn] [697_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_004_chr5_0014' to sub-workflow 'CallGenome'
[2026-06-05T14:00:07.567895Z] [nf-0f7221e1d227c1925a0ea3264828db87-8e4ce-lktzn] [697_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_004_chr5_0015' to sub-workflow 'CallGenome'
[2026-06-05T14:00:07.567958Z] [nf-0f7221e1d227c1925a0ea3264828db87-8e4ce-lktzn] [697_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_004_chr5_0015' to sub-workflow 'CallGenome'
[2026-06-05T14:00:07.568077Z] [nf-0f7221e1d227c1925a0ea3264828db87-8e4ce-lktzn] [697_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_005_chr6_0000' to sub-workflow 'CallGenome'
[2026-06-05T14:00:07.568145Z] [nf-0f7221e1d227c1925a0ea3264828db87-8e4ce-lktzn] [697_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_005_chr6_0000' to sub-workflow 'CallGenome'
[2026-06-05T14:00:07.568258Z] [nf-0f7221e1d227c1925a0ea3264828db87-8e4ce-lktzn] [697_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_005_chr6_0001' to sub-workflow 'CallGenome'
[2026-06-05T14:00:07.568360Z] [nf-0f7221e1d227c1925a0ea3264828db87-8e4ce-lktzn] [697_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_005_chr6_0001' to sub-workflow 'CallGenome'
[2026-06-05T14:00:07.568794Z] [nf-0f7221e1d227c1925a0ea3264828db87-8e4ce-lktzn] [697_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_005_chr6_0002' to sub-workflow 'CallGenome'
[2026-06-05T14:00:07.569530Z] [nf-0f7221e1d227c1925a0ea3264828db87-8e4ce-lktzn] [697_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_005_chr6_0002' to sub-workflow 'CallGenome'
[2026-06-05T14:00:07.572120Z] [nf-0f7221e1d227c1925a0ea3264828db87-8e4ce-lktzn] [697_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_005_chr6_0003' to sub-workflow 'CallGenome'
[2026-06-05T14:00:07.573078Z] [nf-0f7221e1d227c1925a0ea3264828db87-8e4ce-lktzn] [697_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_005_chr6_0003' to sub-workflow 'CallGenome'
[2026-06-05T14:00:07.573280Z] [nf-0f7221e1d227c1925a0ea3264828db87-8e4ce-lktzn] [697_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_005_chr6_0004' to sub-workflow 'CallGenome'
[2026-06-05T14:00:07.573387Z] [nf-0f7221e1d227c1925a0ea3264828db87-8e4ce-lktzn] [697_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_005_chr6_0004' to sub-workflow 'CallGenome'
[2026-06-05T14:00:07.573519Z] [nf-0f7221e1d227c1925a0ea3264828db87-8e4ce-lktzn] [697_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_005_chr6_0005' to sub-workflow 'CallGenome'
[2026-06-05T14:00:07.573596Z] [nf-0f7221e1d227c1925a0ea3264828db87-8e4ce-lktzn] [697_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_005_chr6_0005' to sub-workflow 'CallGenome'
[2026-06-05T14:00:07.573725Z] [nf-0f7221e1d227c1925a0ea3264828db87-8e4ce-lktzn] [697_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_005_chr6_0006' to sub-workflow 'CallGenome'
[2026-06-05T14:00:07.573804Z] [nf-0f7221e1d227c1925a0ea3264828db87-8e4ce-lktzn] [697_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_005_chr6_0006' to sub-workflow 'CallGenome'
[2026-06-05T14:00:07.573943Z] [nf-0f7221e1d227c1925a0ea3264828db87-8e4ce-lktzn] [697_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_005_chr6_0007' to sub-workflow 'CallGenome'
[2026-06-05T14:00:07.574119Z] [nf-0f7221e1d227c1925a0ea3264828db87-8e4ce-lktzn] [697_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_005_chr6_0007' to sub-workflow 'CallGenome'
[2026-06-05T14:00:07.574605Z] [nf-0f7221e1d227c1925a0ea3264828db87-8e4ce-lktzn] [697_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_005_chr6_0008' to sub-workflow 'CallGenome'
[2026-06-05T14:00:07.575455Z] [nf-0f7221e1d227c1925a0ea3264828db87-8e4ce-lktzn] [697_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_005_chr6_0008' to sub-workflow 'CallGenome'
[2026-06-05T14:00:07.576555Z] [nf-0f7221e1d227c1925a0ea3264828db87-8e4ce-lktzn] [697_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_005_chr6_0009' to sub-workflow 'CallGenome'
[2026-06-05T14:00:07.576799Z] [nf-0f7221e1d227c1925a0ea3264828db87-8e4ce-lktzn] [697_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_005_chr6_0009' to sub-workflow 'CallGenome'
[2026-06-05T14:00:07.578096Z] [nf-0f7221e1d227c1925a0ea3264828db87-8e4ce-lktzn] [697_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_005_chr6_0010' to sub-workflow 'CallGenome'
[2026-06-05T14:00:07.578198Z] [nf-0f7221e1d227c1925a0ea3264828db87-8e4ce-lktzn] [697_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_005_chr6_0010' to sub-workflow 'CallGenome'
[2026-06-05T14:00:07.578417Z] [nf-0f7221e1d227c1925a0ea3264828db87-8e4ce-lktzn] [697_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_005_chr6_0011' to sub-workflow 'CallGenome'
[2026-06-05T14:00:07.578498Z] [nf-0f7221e1d227c1925a0ea3264828db87-8e4ce-lktzn] [697_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_005_chr6_0011' to sub-workflow 'CallGenome'
[2026-06-05T14:00:07.578652Z] [nf-0f7221e1d227c1925a0ea3264828db87-8e4ce-lktzn] [697_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_005_chr6_0012' to sub-workflow 'CallGenome'
[2026-06-05T14:00:07.578729Z] [nf-0f7221e1d227c1925a0ea3264828db87-8e4ce-lktzn] [697_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_005_chr6_0012' to sub-workflow 'CallGenome'
[2026-06-05T14:00:07.578929Z] [nf-0f7221e1d227c1925a0ea3264828db87-8e4ce-lktzn] [697_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_005_chr6_0013' to sub-workflow 'CallGenome'
[2026-06-05T14:00:07.579378Z] [nf-0f7221e1d227c1925a0ea3264828db87-8e4ce-lktzn] [697_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_005_chr6_0013' to sub-workflow 'CallGenome'
[2026-06-05T14:00:07.594347Z] [nf-0f7221e1d227c1925a0ea3264828db87-8e4ce-lktzn] [697_1] [TaskManager] Completed command task: 'CallGenome+makeTmpDir' launched from sub-workflow 'CallGenome'
[2026-06-05T14:00:07.598080Z] [nf-0f7221e1d227c1925a0ea3264828db87-8e4ce-lktzn] [697_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_005_chr6_0014' to sub-workflow 'CallGenome'
[2026-06-05T14:00:07.598985Z] [nf-0f7221e1d227c1925a0ea3264828db87-8e4ce-lktzn] [697_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_005_chr6_0014' to sub-workflow 'CallGenome'
[2026-06-05T14:00:07.599254Z] [nf-0f7221e1d227c1925a0ea3264828db87-8e4ce-lktzn] [697_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0012' from sub-workflow 'CallGenome'
[2026-06-05T14:00:07.599499Z] [nf-0f7221e1d227c1925a0ea3264828db87-8e4ce-lktzn] [697_1] [WorkflowRunner] Adding command task 'CallGenome+completedAllGenomeSegments' to sub-workflow 'CallGenome'
[2026-06-05T14:00:07.600013Z] [nf-0f7221e1d227c1925a0ea3264828db87-8e4ce-lktzn] [697_1] [WorkflowRunner] Adding command task 'CallGenome+SNV_concat_vcf' to sub-workflow 'CallGenome'
[2026-06-05T14:00:07.600469Z] [nf-0f7221e1d227c1925a0ea3264828db87-8e4ce-lktzn] [697_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0002' from sub-workflow 'CallGenome'
[2026-06-05T14:00:07.600904Z] [nf-0f7221e1d227c1925a0ea3264828db87-8e4ce-lktzn] [697_1] [WorkflowRunner] Adding command task 'CallGenome+SNV_index_vcf' to sub-workflow 'CallGenome'
[2026-06-05T14:00:07.601296Z] [nf-0f7221e1d227c1925a0ea3264828db87-8e4ce-lktzn] [697_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0007' from sub-workflow 'CallGenome'
[2026-06-05T14:00:07.602000Z] [nf-0f7221e1d227c1925a0ea3264828db87-8e4ce-lktzn] [697_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0009' from sub-workflow 'CallGenome'
[2026-06-05T14:00:07.602907Z] [nf-0f7221e1d227c1925a0ea3264828db87-8e4ce-lktzn] [697_1] [WorkflowRunner] Adding command task 'CallGenome+Indel_concat_vcf' to sub-workflow 'CallGenome'
[2026-06-05T14:00:07.603562Z] [nf-0f7221e1d227c1925a0ea3264828db87-8e4ce-lktzn] [697_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0004' from sub-workflow 'CallGenome'
[2026-06-05T14:00:07.603910Z] [nf-0f7221e1d227c1925a0ea3264828db87-8e4ce-lktzn] [697_1] [WorkflowRunner] Adding command task 'CallGenome+Indel_index_vcf' to sub-workflow 'CallGenome'
[2026-06-05T14:00:07.604731Z] [nf-0f7221e1d227c1925a0ea3264828db87-8e4ce-lktzn] [697_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0013' from sub-workflow 'CallGenome'
[2026-06-05T14:00:07.605787Z] [nf-0f7221e1d227c1925a0ea3264828db87-8e4ce-lktzn] [697_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0001' from sub-workflow 'CallGenome'
[2026-06-05T14:00:07.606385Z] [nf-0f7221e1d227c1925a0ea3264828db87-8e4ce-lktzn] [697_1] [WorkflowRunner] Adding command task 'CallGenome+mergeRunStats' to sub-workflow 'CallGenome'
[2026-06-05T14:00:07.607374Z] [nf-0f7221e1d227c1925a0ea3264828db87-8e4ce-lktzn] [697_1] [WorkflowRunner] Adding command task 'CallGenome+removeTmpDir' to sub-workflow 'CallGenome'
[2026-06-05T14:00:07.607700Z] [nf-0f7221e1d227c1925a0ea3264828db87-8e4ce-lktzn] [697_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0005' from sub-workflow 'CallGenome'
[2026-06-05T14:00:07.608421Z] [nf-0f7221e1d227c1925a0ea3264828db87-8e4ce-lktzn] [697_1] [TaskRunner:CallGenome] Finished task specification for sub-workflow
[2026-06-05T14:00:07.612927Z] [nf-0f7221e1d227c1925a0ea3264828db87-8e4ce-lktzn] [697_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_005_chr6_0012] Task initiated on local node
[2026-06-05T14:00:07.615892Z] [nf-0f7221e1d227c1925a0ea3264828db87-8e4ce-lktzn] [697_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_005_chr6_0002] Task initiated on local node
[2026-06-05T14:00:07.619356Z] [nf-0f7221e1d227c1925a0ea3264828db87-8e4ce-lktzn] [697_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_003_chr4_0009] Task initiated on local node
[2026-06-05T14:00:07.622058Z] [nf-0f7221e1d227c1925a0ea3264828db87-8e4ce-lktzn] [697_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_003_chr4_0007] Task initiated on local node
[2026-06-05T14:00:07.627056Z] [nf-0f7221e1d227c1925a0ea3264828db87-8e4ce-lktzn] [697_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_003_chr4_0004] Task initiated on local node
[2026-06-05T14:00:07.630252Z] [nf-0f7221e1d227c1925a0ea3264828db87-8e4ce-lktzn] [697_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_004_chr5_0013] Task initiated on local node
[2026-06-05T14:00:07.631874Z] [nf-0f7221e1d227c1925a0ea3264828db87-8e4ce-lktzn] [697_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_003_chr4_0001] Task initiated on local node
[2026-06-05T14:00:07.635172Z] [nf-0f7221e1d227c1925a0ea3264828db87-8e4ce-lktzn] [697_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_005_chr6_0005] Task initiated on local node
[2026-06-05T14:00:07.897162Z] [nf-0f7221e1d227c1925a0ea3264828db87-8e4ce-lktzn] [697_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0001' launched from sub-workflow 'CallGenome'
[2026-06-05T14:00:07.898272Z] [nf-0f7221e1d227c1925a0ea3264828db87-8e4ce-lktzn] [697_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0012' from sub-workflow 'CallGenome'
[2026-06-05T14:00:07.901770Z] [nf-0f7221e1d227c1925a0ea3264828db87-8e4ce-lktzn] [697_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_003_chr4_0012] Task initiated on local node
[2026-06-05T14:00:08.012877Z] [nf-0f7221e1d227c1925a0ea3264828db87-8e4ce-lktzn] [697_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0012' launched from sub-workflow 'CallGenome'
[2026-06-05T14:00:08.013991Z] [nf-0f7221e1d227c1925a0ea3264828db87-8e4ce-lktzn] [697_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0014' from sub-workflow 'CallGenome'
[2026-06-05T14:00:08.017666Z] [nf-0f7221e1d227c1925a0ea3264828db87-8e4ce-lktzn] [697_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_003_chr4_0014] Task initiated on local node
[2026-06-05T14:00:08.429751Z] [nf-0f7221e1d227c1925a0ea3264828db87-8e4ce-lktzn] [697_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0005' launched from sub-workflow 'CallGenome'
[2026-06-05T14:00:08.430869Z] [nf-0f7221e1d227c1925a0ea3264828db87-8e4ce-lktzn] [697_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0003' from sub-workflow 'CallGenome'
[2026-06-05T14:00:08.434148Z] [nf-0f7221e1d227c1925a0ea3264828db87-8e4ce-lktzn] [697_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_004_chr5_0003] Task initiated on local node
[2026-06-05T14:00:09.146993Z] [nf-0f7221e1d227c1925a0ea3264828db87-8e4ce-lktzn] [697_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0009' launched from sub-workflow 'CallGenome'
[2026-06-05T14:00:09.148425Z] [nf-0f7221e1d227c1925a0ea3264828db87-8e4ce-lktzn] [697_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0008' from sub-workflow 'CallGenome'
[2026-06-05T14:00:09.152616Z] [nf-0f7221e1d227c1925a0ea3264828db87-8e4ce-lktzn] [697_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_004_chr5_0008] Task initiated on local node
[2026-06-05T14:00:09.313569Z] [nf-0f7221e1d227c1925a0ea3264828db87-8e4ce-lktzn] [697_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0014' launched from sub-workflow 'CallGenome'
[2026-06-05T14:00:09.315196Z] [nf-0f7221e1d227c1925a0ea3264828db87-8e4ce-lktzn] [697_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0007' from sub-workflow 'CallGenome'
[2026-06-05T14:00:09.319211Z] [nf-0f7221e1d227c1925a0ea3264828db87-8e4ce-lktzn] [697_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_005_chr6_0007] Task initiated on local node
[2026-06-05T14:00:09.380201Z] [nf-0f7221e1d227c1925a0ea3264828db87-8e4ce-lktzn] [697_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0007' launched from sub-workflow 'CallGenome'
[2026-06-05T14:00:09.381667Z] [nf-0f7221e1d227c1925a0ea3264828db87-8e4ce-lktzn] [697_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0014' from sub-workflow 'CallGenome'
[2026-06-05T14:00:09.385724Z] [nf-0f7221e1d227c1925a0ea3264828db87-8e4ce-lktzn] [697_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_005_chr6_0014] Task initiated on local node
[2026-06-05T14:00:09.398870Z] [nf-0f7221e1d227c1925a0ea3264828db87-8e4ce-lktzn] [697_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0004' launched from sub-workflow 'CallGenome'
[2026-06-05T14:00:09.400262Z] [nf-0f7221e1d227c1925a0ea3264828db87-8e4ce-lktzn] [697_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0003' from sub-workflow 'CallGenome'
[2026-06-05T14:00:09.404635Z] [nf-0f7221e1d227c1925a0ea3264828db87-8e4ce-lktzn] [697_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_003_chr4_0003] Task initiated on local node
[2026-06-05T14:00:09.465545Z] [nf-0f7221e1d227c1925a0ea3264828db87-8e4ce-lktzn] [697_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0014' launched from sub-workflow 'CallGenome'
[2026-06-05T14:00:09.467009Z] [nf-0f7221e1d227c1925a0ea3264828db87-8e4ce-lktzn] [697_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0012' from sub-workflow 'CallGenome'
[2026-06-05T14:00:09.470420Z] [nf-0f7221e1d227c1925a0ea3264828db87-8e4ce-lktzn] [697_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_004_chr5_0012] Task initiated on local node
[2026-06-05T14:00:09.932873Z] [nf-0f7221e1d227c1925a0ea3264828db87-8e4ce-lktzn] [697_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0013' launched from sub-workflow 'CallGenome'
[2026-06-05T14:00:09.934323Z] [nf-0f7221e1d227c1925a0ea3264828db87-8e4ce-lktzn] [697_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0007' from sub-workflow 'CallGenome'
[2026-06-05T14:00:09.937768Z] [nf-0f7221e1d227c1925a0ea3264828db87-8e4ce-lktzn] [697_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_003_chr4_0007] Task initiated on local node
[2026-06-05T14:00:09.999032Z] [nf-0f7221e1d227c1925a0ea3264828db87-8e4ce-lktzn] [697_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0007' launched from sub-workflow 'CallGenome'
[2026-06-05T14:00:10.000458Z] [nf-0f7221e1d227c1925a0ea3264828db87-8e4ce-lktzn] [697_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0011' from sub-workflow 'CallGenome'
[2026-06-05T14:00:10.004234Z] [nf-0f7221e1d227c1925a0ea3264828db87-8e4ce-lktzn] [697_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_004_chr5_0011] Task initiated on local node
[2026-06-05T14:00:10.215628Z] [nf-0f7221e1d227c1925a0ea3264828db87-8e4ce-lktzn] [697_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0012' launched from sub-workflow 'CallGenome'
[2026-06-05T14:00:10.216737Z] [nf-0f7221e1d227c1925a0ea3264828db87-8e4ce-lktzn] [697_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0005' from sub-workflow 'CallGenome'
[2026-06-05T14:00:10.221144Z] [nf-0f7221e1d227c1925a0ea3264828db87-8e4ce-lktzn] [697_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_005_chr6_0005] Task initiated on local node
[2026-06-05T14:00:10.282235Z] [nf-0f7221e1d227c1925a0ea3264828db87-8e4ce-lktzn] [697_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0005' launched from sub-workflow 'CallGenome'
[2026-06-05T14:00:10.283441Z] [nf-0f7221e1d227c1925a0ea3264828db87-8e4ce-lktzn] [697_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0013' from sub-workflow 'CallGenome'
[2026-06-05T14:00:10.287461Z] [nf-0f7221e1d227c1925a0ea3264828db87-8e4ce-lktzn] [697_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_004_chr5_0013] Task initiated on local node
[2026-06-05T14:00:10.348534Z] [nf-0f7221e1d227c1925a0ea3264828db87-8e4ce-lktzn] [697_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0003' launched from sub-workflow 'CallGenome'
[2026-06-05T14:00:10.348797Z] [nf-0f7221e1d227c1925a0ea3264828db87-8e4ce-lktzn] [697_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0013' launched from sub-workflow 'CallGenome'
[2026-06-05T14:00:10.349847Z] [nf-0f7221e1d227c1925a0ea3264828db87-8e4ce-lktzn] [697_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0009' from sub-workflow 'CallGenome'
[2026-06-05T14:00:10.350376Z] [nf-0f7221e1d227c1925a0ea3264828db87-8e4ce-lktzn] [697_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0009' from sub-workflow 'CallGenome'
[2026-06-05T14:00:10.355574Z] [nf-0f7221e1d227c1925a0ea3264828db87-8e4ce-lktzn] [697_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_005_chr6_0009] Task initiated on local node
[2026-06-05T14:00:10.356707Z] [nf-0f7221e1d227c1925a0ea3264828db87-8e4ce-lktzn] [697_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_004_chr5_0009] Task initiated on local node
[2026-06-05T14:00:10.368197Z] [nf-0f7221e1d227c1925a0ea3264828db87-8e4ce-lktzn] [697_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0008' launched from sub-workflow 'CallGenome'
[2026-06-05T14:00:10.368264Z] [nf-0f7221e1d227c1925a0ea3264828db87-8e4ce-lktzn] [697_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0002' launched from sub-workflow 'CallGenome'
[2026-06-05T14:00:10.369321Z] [nf-0f7221e1d227c1925a0ea3264828db87-8e4ce-lktzn] [697_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0012' from sub-workflow 'CallGenome'
[2026-06-05T14:00:10.369640Z] [nf-0f7221e1d227c1925a0ea3264828db87-8e4ce-lktzn] [697_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0002' from sub-workflow 'CallGenome'
[2026-06-05T14:00:10.373250Z] [nf-0f7221e1d227c1925a0ea3264828db87-8e4ce-lktzn] [697_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_003_chr4_0012] Task initiated on local node
[2026-06-05T14:00:10.374394Z] [nf-0f7221e1d227c1925a0ea3264828db87-8e4ce-lktzn] [697_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_003_chr4_0002] Task initiated on local node
[2026-06-05T14:00:10.434748Z] [nf-0f7221e1d227c1925a0ea3264828db87-8e4ce-lktzn] [697_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0012' launched from sub-workflow 'CallGenome'
[2026-06-05T14:00:10.436067Z] [nf-0f7221e1d227c1925a0ea3264828db87-8e4ce-lktzn] [697_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0006' from sub-workflow 'CallGenome'
[2026-06-05T14:00:10.439815Z] [nf-0f7221e1d227c1925a0ea3264828db87-8e4ce-lktzn] [697_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_004_chr5_0006] Task initiated on local node
[2026-06-05T14:00:10.952420Z] [nf-0f7221e1d227c1925a0ea3264828db87-8e4ce-lktzn] [697_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0007' launched from sub-workflow 'CallGenome'
[2026-06-05T14:00:10.953635Z] [nf-0f7221e1d227c1925a0ea3264828db87-8e4ce-lktzn] [697_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0007' from sub-workflow 'CallGenome'
[2026-06-05T14:00:10.957348Z] [nf-0f7221e1d227c1925a0ea3264828db87-8e4ce-lktzn] [697_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_005_chr6_0007] Task initiated on local node
[2026-06-05T14:00:11.018758Z] [nf-0f7221e1d227c1925a0ea3264828db87-8e4ce-lktzn] [697_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0007' launched from sub-workflow 'CallGenome'
[2026-06-05T14:00:11.019896Z] [nf-0f7221e1d227c1925a0ea3264828db87-8e4ce-lktzn] [697_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0000' from sub-workflow 'CallGenome'
[2026-06-05T14:00:11.032610Z] [nf-0f7221e1d227c1925a0ea3264828db87-8e4ce-lktzn] [697_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_003_chr4_0000] Task initiated on local node
[2026-06-05T14:00:11.134571Z] [nf-0f7221e1d227c1925a0ea3264828db87-8e4ce-lktzn] [697_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0000' launched from sub-workflow 'CallGenome'
[2026-06-05T14:00:11.134694Z] [nf-0f7221e1d227c1925a0ea3264828db87-8e4ce-lktzn] [697_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0002' launched from sub-workflow 'CallGenome'
[2026-06-05T14:00:11.135861Z] [nf-0f7221e1d227c1925a0ea3264828db87-8e4ce-lktzn] [697_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0002' from sub-workflow 'CallGenome'
[2026-06-05T14:00:11.136396Z] [nf-0f7221e1d227c1925a0ea3264828db87-8e4ce-lktzn] [697_1] [TaskManager] Launching command task: 'CallGenome+fixVcfHeader_chromId_003_chr4_0000' from sub-workflow 'CallGenome'
[2026-06-05T14:00:11.140532Z] [nf-0f7221e1d227c1925a0ea3264828db87-8e4ce-lktzn] [697_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_003_chr4_0002] Task initiated on local node
[2026-06-05T14:00:11.174462Z] [nf-0f7221e1d227c1925a0ea3264828db87-8e4ce-lktzn] [697_1] [TaskRunner:CallGenome+fixVcfHeader_chromId_003_chr4_0000] Task initiated on local node
[2026-06-05T14:00:11.201441Z] [nf-0f7221e1d227c1925a0ea3264828db87-8e4ce-lktzn] [697_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0002' launched from sub-workflow 'CallGenome'
[2026-06-05T14:00:11.201578Z] [nf-0f7221e1d227c1925a0ea3264828db87-8e4ce-lktzn] [697_1] [TaskManager] Completed command task: 'CallGenome+fixVcfHeader_chromId_003_chr4_0000' launched from sub-workflow 'CallGenome'
[2026-06-05T14:00:11.202723Z] [nf-0f7221e1d227c1925a0ea3264828db87-8e4ce-lktzn] [697_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0011' from sub-workflow 'CallGenome'
[2026-06-05T14:00:11.203225Z] [nf-0f7221e1d227c1925a0ea3264828db87-8e4ce-lktzn] [697_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0002' from sub-workflow 'CallGenome'
[2026-06-05T14:00:11.207355Z] [nf-0f7221e1d227c1925a0ea3264828db87-8e4ce-lktzn] [697_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_005_chr6_0002] Task initiated on local node
[2026-06-05T14:00:11.209214Z] [nf-0f7221e1d227c1925a0ea3264828db87-8e4ce-lktzn] [697_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_003_chr4_0011] Task initiated on local node
[2026-06-05T14:00:11.236386Z] [nf-0f7221e1d227c1925a0ea3264828db87-8e4ce-lktzn] [697_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0003' launched from sub-workflow 'CallGenome'
[2026-06-05T14:00:11.237508Z] [nf-0f7221e1d227c1925a0ea3264828db87-8e4ce-lktzn] [697_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0000' from sub-workflow 'CallGenome'
[2026-06-05T14:00:11.242068Z] [nf-0f7221e1d227c1925a0ea3264828db87-8e4ce-lktzn] [697_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_004_chr5_0000] Task initiated on local node
[2026-06-05T14:00:11.245803Z] [nf-0f7221e1d227c1925a0ea3264828db87-8e4ce-lktzn] [697_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0002' launched from sub-workflow 'CallGenome'
[2026-06-05T14:00:11.246816Z] [nf-0f7221e1d227c1925a0ea3264828db87-8e4ce-lktzn] [697_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0009' from sub-workflow 'CallGenome'
[2026-06-05T14:00:11.250105Z] [nf-0f7221e1d227c1925a0ea3264828db87-8e4ce-lktzn] [697_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_003_chr4_0009] Task initiated on local node
[2026-06-05T14:00:11.311540Z] [nf-0f7221e1d227c1925a0ea3264828db87-8e4ce-lktzn] [697_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0009' launched from sub-workflow 'CallGenome'
[2026-06-05T14:00:11.312771Z] [nf-0f7221e1d227c1925a0ea3264828db87-8e4ce-lktzn] [697_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0015' from sub-workflow 'CallGenome'
[2026-06-05T14:00:11.316147Z] [nf-0f7221e1d227c1925a0ea3264828db87-8e4ce-lktzn] [697_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_004_chr5_0015] Task initiated on local node
[2026-06-05T14:00:11.779034Z] [nf-0f7221e1d227c1925a0ea3264828db87-8e4ce-lktzn] [697_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0009' launched from sub-workflow 'CallGenome'
[2026-06-05T14:00:11.780020Z] [nf-0f7221e1d227c1925a0ea3264828db87-8e4ce-lktzn] [697_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0006' from sub-workflow 'CallGenome'
[2026-06-05T14:00:11.784025Z] [nf-0f7221e1d227c1925a0ea3264828db87-8e4ce-lktzn] [697_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_003_chr4_0006] Task initiated on local node
[2026-06-05T14:00:12.096054Z] [nf-0f7221e1d227c1925a0ea3264828db87-8e4ce-lktzn] [697_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0011' launched from sub-workflow 'CallGenome'
[2026-06-05T14:00:12.097215Z] [nf-0f7221e1d227c1925a0ea3264828db87-8e4ce-lktzn] [697_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0005' from sub-workflow 'CallGenome'
[2026-06-05T14:00:12.100987Z] [nf-0f7221e1d227c1925a0ea3264828db87-8e4ce-lktzn] [697_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_004_chr5_0005] Task initiated on local node
[2026-06-05T14:00:12.312939Z] [nf-0f7221e1d227c1925a0ea3264828db87-8e4ce-lktzn] [697_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0011' launched from sub-workflow 'CallGenome'
[2026-06-05T14:00:12.313047Z] [nf-0f7221e1d227c1925a0ea3264828db87-8e4ce-lktzn] [697_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0012' launched from sub-workflow 'CallGenome'
[2026-06-05T14:00:12.314030Z] [nf-0f7221e1d227c1925a0ea3264828db87-8e4ce-lktzn] [697_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0011' from sub-workflow 'CallGenome'
[2026-06-05T14:00:12.314604Z] [nf-0f7221e1d227c1925a0ea3264828db87-8e4ce-lktzn] [697_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0004' from sub-workflow 'CallGenome'
[2026-06-05T14:00:12.318886Z] [nf-0f7221e1d227c1925a0ea3264828db87-8e4ce-lktzn] [697_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_004_chr5_0011] Task initiated on local node
[2026-06-05T14:00:12.331595Z] [nf-0f7221e1d227c1925a0ea3264828db87-8e4ce-lktzn] [697_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0009' launched from sub-workflow 'CallGenome'
[2026-06-05T14:00:12.332674Z] [nf-0f7221e1d227c1925a0ea3264828db87-8e4ce-lktzn] [697_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0009' from sub-workflow 'CallGenome'
[2026-06-05T14:00:12.336333Z] [nf-0f7221e1d227c1925a0ea3264828db87-8e4ce-lktzn] [697_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_005_chr6_0009] Task initiated on local node
[2026-06-05T14:00:12.360028Z] [nf-0f7221e1d227c1925a0ea3264828db87-8e4ce-lktzn] [697_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_005_chr6_0004] Task initiated on local node
[2026-06-05T14:00:12.365513Z] [nf-0f7221e1d227c1925a0ea3264828db87-8e4ce-lktzn] [697_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0011' launched from sub-workflow 'CallGenome'
[2026-06-05T14:00:12.366603Z] [nf-0f7221e1d227c1925a0ea3264828db87-8e4ce-lktzn] [697_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0010' from sub-workflow 'CallGenome'
[2026-06-05T14:00:12.370868Z] [nf-0f7221e1d227c1925a0ea3264828db87-8e4ce-lktzn] [697_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0009' launched from sub-workflow 'CallGenome'
[2026-06-05T14:00:12.371148Z] [nf-0f7221e1d227c1925a0ea3264828db87-8e4ce-lktzn] [697_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_004_chr5_0010] Task initiated on local node
[2026-06-05T14:00:12.371908Z] [nf-0f7221e1d227c1925a0ea3264828db87-8e4ce-lktzn] [697_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0004' from sub-workflow 'CallGenome'
[2026-06-05T14:00:12.375556Z] [nf-0f7221e1d227c1925a0ea3264828db87-8e4ce-lktzn] [697_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_003_chr4_0004] Task initiated on local node
[2026-06-05T14:00:12.436646Z] [nf-0f7221e1d227c1925a0ea3264828db87-8e4ce-lktzn] [697_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0004' launched from sub-workflow 'CallGenome'
[2026-06-05T14:00:12.437824Z] [nf-0f7221e1d227c1925a0ea3264828db87-8e4ce-lktzn] [697_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0008' from sub-workflow 'CallGenome'
[2026-06-05T14:00:12.441631Z] [nf-0f7221e1d227c1925a0ea3264828db87-8e4ce-lktzn] [697_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_003_chr4_0008] Task initiated on local node
[2026-06-05T14:00:12.603070Z] [nf-0f7221e1d227c1925a0ea3264828db87-8e4ce-lktzn] [697_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0000' launched from sub-workflow 'CallGenome'
[2026-06-05T14:00:12.604133Z] [nf-0f7221e1d227c1925a0ea3264828db87-8e4ce-lktzn] [697_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0011' from sub-workflow 'CallGenome'
[2026-06-05T14:00:12.607820Z] [nf-0f7221e1d227c1925a0ea3264828db87-8e4ce-lktzn] [697_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_003_chr4_0011] Task initiated on local node
[2026-06-05T14:00:12.669121Z] [nf-0f7221e1d227c1925a0ea3264828db87-8e4ce-lktzn] [697_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0011' launched from sub-workflow 'CallGenome'
[2026-06-05T14:00:12.670288Z] [nf-0f7221e1d227c1925a0ea3264828db87-8e4ce-lktzn] [697_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0003' from sub-workflow 'CallGenome'
[2026-06-05T14:00:12.674062Z] [nf-0f7221e1d227c1925a0ea3264828db87-8e4ce-lktzn] [697_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_004_chr5_0003] Task initiated on local node
[2026-06-05T14:00:12.735063Z] [nf-0f7221e1d227c1925a0ea3264828db87-8e4ce-lktzn] [697_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0003' launched from sub-workflow 'CallGenome'
[2026-06-05T14:00:12.736096Z] [nf-0f7221e1d227c1925a0ea3264828db87-8e4ce-lktzn] [697_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0008' from sub-workflow 'CallGenome'
[2026-06-05T14:00:12.739908Z] [nf-0f7221e1d227c1925a0ea3264828db87-8e4ce-lktzn] [697_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_004_chr5_0008] Task initiated on local node
[2026-06-05T14:00:12.744273Z] [nf-0f7221e1d227c1925a0ea3264828db87-8e4ce-lktzn] [697_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0006' launched from sub-workflow 'CallGenome'
[2026-06-05T14:00:12.745058Z] [nf-0f7221e1d227c1925a0ea3264828db87-8e4ce-lktzn] [697_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0006' from sub-workflow 'CallGenome'
[2026-06-05T14:00:12.748530Z] [nf-0f7221e1d227c1925a0ea3264828db87-8e4ce-lktzn] [697_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_004_chr5_0006] Task initiated on local node
[2026-06-05T14:00:12.777877Z] [nf-0f7221e1d227c1925a0ea3264828db87-8e4ce-lktzn] [697_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0008' launched from sub-workflow 'CallGenome'
[2026-06-05T14:00:12.778971Z] [nf-0f7221e1d227c1925a0ea3264828db87-8e4ce-lktzn] [697_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0012' from sub-workflow 'CallGenome'
[2026-06-05T14:00:12.783385Z] [nf-0f7221e1d227c1925a0ea3264828db87-8e4ce-lktzn] [697_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_005_chr6_0012] Task initiated on local node
[2026-06-05T14:00:12.787665Z] [nf-0f7221e1d227c1925a0ea3264828db87-8e4ce-lktzn] [697_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0006' launched from sub-workflow 'CallGenome'
[2026-06-05T14:00:12.788666Z] [nf-0f7221e1d227c1925a0ea3264828db87-8e4ce-lktzn] [697_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0006' from sub-workflow 'CallGenome'
[2026-06-05T14:00:12.792428Z] [nf-0f7221e1d227c1925a0ea3264828db87-8e4ce-lktzn] [697_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_005_chr6_0006] Task initiated on local node
[2026-06-05T14:00:12.821477Z] [nf-0f7221e1d227c1925a0ea3264828db87-8e4ce-lktzn] [697_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0012' launched from sub-workflow 'CallGenome'
[2026-06-05T14:00:12.822502Z] [nf-0f7221e1d227c1925a0ea3264828db87-8e4ce-lktzn] [697_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0001' from sub-workflow 'CallGenome'
[2026-06-05T14:00:12.826001Z] [nf-0f7221e1d227c1925a0ea3264828db87-8e4ce-lktzn] [697_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_003_chr4_0001] Task initiated on local node
[2026-06-05T14:00:12.887149Z] [nf-0f7221e1d227c1925a0ea3264828db87-8e4ce-lktzn] [697_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0001' launched from sub-workflow 'CallGenome'
[2026-06-05T14:00:12.888242Z] [nf-0f7221e1d227c1925a0ea3264828db87-8e4ce-lktzn] [697_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0002' from sub-workflow 'CallGenome'
[2026-06-05T14:00:12.892090Z] [nf-0f7221e1d227c1925a0ea3264828db87-8e4ce-lktzn] [697_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_004_chr5_0002] Task initiated on local node
[2026-06-05T14:00:13.506198Z] [nf-0f7221e1d227c1925a0ea3264828db87-8e4ce-lktzn] [697_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0010' launched from sub-workflow 'CallGenome'
[2026-06-05T14:00:13.507205Z] [nf-0f7221e1d227c1925a0ea3264828db87-8e4ce-lktzn] [697_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0014' from sub-workflow 'CallGenome'
[2026-06-05T14:00:13.510778Z] [nf-0f7221e1d227c1925a0ea3264828db87-8e4ce-lktzn] [697_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_003_chr4_0014] Task initiated on local node
[2026-06-05T14:00:13.572138Z] [nf-0f7221e1d227c1925a0ea3264828db87-8e4ce-lktzn] [697_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0014' launched from sub-workflow 'CallGenome'
[2026-06-05T14:00:13.572280Z] [nf-0f7221e1d227c1925a0ea3264828db87-8e4ce-lktzn] [697_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0005' launched from sub-workflow 'CallGenome'
[2026-06-05T14:00:13.573203Z] [nf-0f7221e1d227c1925a0ea3264828db87-8e4ce-lktzn] [697_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0005' from sub-workflow 'CallGenome'
[2026-06-05T14:00:13.573580Z] [nf-0f7221e1d227c1925a0ea3264828db87-8e4ce-lktzn] [697_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0014' from sub-workflow 'CallGenome'
[2026-06-05T14:00:13.577128Z] [nf-0f7221e1d227c1925a0ea3264828db87-8e4ce-lktzn] [697_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_004_chr5_0005] Task initiated on local node
[2026-06-05T14:00:13.578162Z] [nf-0f7221e1d227c1925a0ea3264828db87-8e4ce-lktzn] [697_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_005_chr6_0014] Task initiated on local node
[2026-06-05T14:00:13.590160Z] [nf-0f7221e1d227c1925a0ea3264828db87-8e4ce-lktzn] [697_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0015' launched from sub-workflow 'CallGenome'
[2026-06-05T14:00:13.591046Z] [nf-0f7221e1d227c1925a0ea3264828db87-8e4ce-lktzn] [697_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0000' from sub-workflow 'CallGenome'
[2026-06-05T14:00:13.594031Z] [nf-0f7221e1d227c1925a0ea3264828db87-8e4ce-lktzn] [697_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_004_chr5_0000] Task initiated on local node
[2026-06-05T14:00:13.623768Z] [nf-0f7221e1d227c1925a0ea3264828db87-8e4ce-lktzn] [697_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0005' launched from sub-workflow 'CallGenome'
[2026-06-05T14:00:13.623892Z] [nf-0f7221e1d227c1925a0ea3264828db87-8e4ce-lktzn] [697_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0014' launched from sub-workflow 'CallGenome'
[2026-06-05T14:00:13.624774Z] [nf-0f7221e1d227c1925a0ea3264828db87-8e4ce-lktzn] [697_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0015' from sub-workflow 'CallGenome'
[2026-06-05T14:00:13.625176Z] [nf-0f7221e1d227c1925a0ea3264828db87-8e4ce-lktzn] [697_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0005' from sub-workflow 'CallGenome'
[2026-06-05T14:00:13.628691Z] [nf-0f7221e1d227c1925a0ea3264828db87-8e4ce-lktzn] [697_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_004_chr5_0015] Task initiated on local node
[2026-06-05T14:00:13.629920Z] [nf-0f7221e1d227c1925a0ea3264828db87-8e4ce-lktzn] [697_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_003_chr4_0005] Task initiated on local node
[2026-06-05T14:00:13.633568Z] [nf-0f7221e1d227c1925a0ea3264828db87-8e4ce-lktzn] [697_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0000' launched from sub-workflow 'CallGenome'
[2026-06-05T14:00:13.634337Z] [nf-0f7221e1d227c1925a0ea3264828db87-8e4ce-lktzn] [697_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0013' from sub-workflow 'CallGenome'
[2026-06-05T14:00:13.637604Z] [nf-0f7221e1d227c1925a0ea3264828db87-8e4ce-lktzn] [697_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_003_chr4_0013] Task initiated on local node
[2026-06-05T14:00:13.666430Z] [nf-0f7221e1d227c1925a0ea3264828db87-8e4ce-lktzn] [697_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0015' launched from sub-workflow 'CallGenome'
[2026-06-05T14:00:13.667369Z] [nf-0f7221e1d227c1925a0ea3264828db87-8e4ce-lktzn] [697_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0010' from sub-workflow 'CallGenome'
[2026-06-05T14:00:13.670586Z] [nf-0f7221e1d227c1925a0ea3264828db87-8e4ce-lktzn] [697_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_004_chr5_0010] Task initiated on local node
[2026-06-05T14:00:13.732020Z] [nf-0f7221e1d227c1925a0ea3264828db87-8e4ce-lktzn] [697_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0010' launched from sub-workflow 'CallGenome'
[2026-06-05T14:00:13.732139Z] [nf-0f7221e1d227c1925a0ea3264828db87-8e4ce-lktzn] [697_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0002' launched from sub-workflow 'CallGenome'
[2026-06-05T14:00:13.733001Z] [nf-0f7221e1d227c1925a0ea3264828db87-8e4ce-lktzn] [697_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0003' from sub-workflow 'CallGenome'
[2026-06-05T14:00:13.733506Z] [nf-0f7221e1d227c1925a0ea3264828db87-8e4ce-lktzn] [697_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0004' from sub-workflow 'CallGenome'
[2026-06-05T14:00:13.737274Z] [nf-0f7221e1d227c1925a0ea3264828db87-8e4ce-lktzn] [697_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_003_chr4_0003] Task initiated on local node
[2026-06-05T14:00:13.738139Z] [nf-0f7221e1d227c1925a0ea3264828db87-8e4ce-lktzn] [697_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_004_chr5_0004] Task initiated on local node
[2026-06-05T14:00:13.798941Z] [nf-0f7221e1d227c1925a0ea3264828db87-8e4ce-lktzn] [697_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0003' launched from sub-workflow 'CallGenome'
[2026-06-05T14:00:13.799938Z] [nf-0f7221e1d227c1925a0ea3264828db87-8e4ce-lktzn] [697_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0008' from sub-workflow 'CallGenome'
[2026-06-05T14:00:13.803818Z] [nf-0f7221e1d227c1925a0ea3264828db87-8e4ce-lktzn] [697_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_005_chr6_0008] Task initiated on local node
[2026-06-05T14:00:13.965567Z] [nf-0f7221e1d227c1925a0ea3264828db87-8e4ce-lktzn] [697_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0006' launched from sub-workflow 'CallGenome'
[2026-06-05T14:00:13.966486Z] [nf-0f7221e1d227c1925a0ea3264828db87-8e4ce-lktzn] [697_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0006' from sub-workflow 'CallGenome'
[2026-06-05T14:00:13.969745Z] [nf-0f7221e1d227c1925a0ea3264828db87-8e4ce-lktzn] [697_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_003_chr4_0006] Task initiated on local node
[2026-06-05T14:00:14.031149Z] [nf-0f7221e1d227c1925a0ea3264828db87-8e4ce-lktzn] [697_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0006' launched from sub-workflow 'CallGenome'
[2026-06-05T14:00:14.032100Z] [nf-0f7221e1d227c1925a0ea3264828db87-8e4ce-lktzn] [697_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0001' from sub-workflow 'CallGenome'
[2026-06-05T14:00:14.035762Z] [nf-0f7221e1d227c1925a0ea3264828db87-8e4ce-lktzn] [697_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_004_chr5_0001] Task initiated on local node
[2026-06-05T14:00:14.247449Z] [nf-0f7221e1d227c1925a0ea3264828db87-8e4ce-lktzn] [697_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0004' launched from sub-workflow 'CallGenome'
[2026-06-05T14:00:14.247567Z] [nf-0f7221e1d227c1925a0ea3264828db87-8e4ce-lktzn] [697_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0008' launched from sub-workflow 'CallGenome'
[2026-06-05T14:00:14.248392Z] [nf-0f7221e1d227c1925a0ea3264828db87-8e4ce-lktzn] [697_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0004' from sub-workflow 'CallGenome'
[2026-06-05T14:00:14.248935Z] [nf-0f7221e1d227c1925a0ea3264828db87-8e4ce-lktzn] [697_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0000' from sub-workflow 'CallGenome'
[2026-06-05T14:00:14.252733Z] [nf-0f7221e1d227c1925a0ea3264828db87-8e4ce-lktzn] [697_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_005_chr6_0004] Task initiated on local node
[2026-06-05T14:00:14.254088Z] [nf-0f7221e1d227c1925a0ea3264828db87-8e4ce-lktzn] [697_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_005_chr6_0000] Task initiated on local node
[2026-06-05T14:00:14.313822Z] [nf-0f7221e1d227c1925a0ea3264828db87-8e4ce-lktzn] [697_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0004' launched from sub-workflow 'CallGenome'
[2026-06-05T14:00:14.314747Z] [nf-0f7221e1d227c1925a0ea3264828db87-8e4ce-lktzn] [697_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0015' from sub-workflow 'CallGenome'
[2026-06-05T14:00:14.318100Z] [nf-0f7221e1d227c1925a0ea3264828db87-8e4ce-lktzn] [697_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_003_chr4_0015] Task initiated on local node
[2026-06-05T14:00:14.331148Z] [nf-0f7221e1d227c1925a0ea3264828db87-8e4ce-lktzn] [697_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0006' launched from sub-workflow 'CallGenome'
[2026-06-05T14:00:14.331962Z] [nf-0f7221e1d227c1925a0ea3264828db87-8e4ce-lktzn] [697_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0007' from sub-workflow 'CallGenome'
[2026-06-05T14:00:14.335550Z] [nf-0f7221e1d227c1925a0ea3264828db87-8e4ce-lktzn] [697_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_004_chr5_0007] Task initiated on local node
[2026-06-05T14:00:14.798561Z] [nf-0f7221e1d227c1925a0ea3264828db87-8e4ce-lktzn] [697_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0008' launched from sub-workflow 'CallGenome'
[2026-06-05T14:00:14.799583Z] [nf-0f7221e1d227c1925a0ea3264828db87-8e4ce-lktzn] [697_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0008' from sub-workflow 'CallGenome'
[2026-06-05T14:00:14.803773Z] [nf-0f7221e1d227c1925a0ea3264828db87-8e4ce-lktzn] [697_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_005_chr6_0008] Task initiated on local node
[2026-06-05T14:00:14.832430Z] [nf-0f7221e1d227c1925a0ea3264828db87-8e4ce-lktzn] [697_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0005' launched from sub-workflow 'CallGenome'
[2026-06-05T14:00:14.833272Z] [nf-0f7221e1d227c1925a0ea3264828db87-8e4ce-lktzn] [697_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0005' from sub-workflow 'CallGenome'
[2026-06-05T14:00:14.837119Z] [nf-0f7221e1d227c1925a0ea3264828db87-8e4ce-lktzn] [697_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_003_chr4_0005] Task initiated on local node
[2026-06-05T14:00:14.841912Z] [nf-0f7221e1d227c1925a0ea3264828db87-8e4ce-lktzn] [697_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0008' launched from sub-workflow 'CallGenome'
[2026-06-05T14:00:14.842628Z] [nf-0f7221e1d227c1925a0ea3264828db87-8e4ce-lktzn] [697_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0000' from sub-workflow 'CallGenome'
[2026-06-05T14:00:14.845611Z] [nf-0f7221e1d227c1925a0ea3264828db87-8e4ce-lktzn] [697_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_003_chr4_0000] Task initiated on local node
[2026-06-05T14:00:14.846529Z] [nf-0f7221e1d227c1925a0ea3264828db87-8e4ce-lktzn] [697_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0013' launched from sub-workflow 'CallGenome'
[2026-06-05T14:00:14.847044Z] [nf-0f7221e1d227c1925a0ea3264828db87-8e4ce-lktzn] [697_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0008' from sub-workflow 'CallGenome'
[2026-06-05T14:00:14.849716Z] [nf-0f7221e1d227c1925a0ea3264828db87-8e4ce-lktzn] [697_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_003_chr4_0008] Task initiated on local node
[2026-06-05T14:00:14.879019Z] [nf-0f7221e1d227c1925a0ea3264828db87-8e4ce-lktzn] [697_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0005' launched from sub-workflow 'CallGenome'
[2026-06-05T14:00:14.879823Z] [nf-0f7221e1d227c1925a0ea3264828db87-8e4ce-lktzn] [697_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0010' from sub-workflow 'CallGenome'
[2026-06-05T14:00:14.883634Z] [nf-0f7221e1d227c1925a0ea3264828db87-8e4ce-lktzn] [697_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_005_chr6_0010] Task initiated on local node
[2026-06-05T14:00:14.888473Z] [nf-0f7221e1d227c1925a0ea3264828db87-8e4ce-lktzn] [697_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0008' launched from sub-workflow 'CallGenome'
[2026-06-05T14:00:14.888533Z] [nf-0f7221e1d227c1925a0ea3264828db87-8e4ce-lktzn] [697_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0000' launched from sub-workflow 'CallGenome'
[2026-06-05T14:00:14.889161Z] [nf-0f7221e1d227c1925a0ea3264828db87-8e4ce-lktzn] [697_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0011' from sub-workflow 'CallGenome'
[2026-06-05T14:00:14.889497Z] [nf-0f7221e1d227c1925a0ea3264828db87-8e4ce-lktzn] [697_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0013' from sub-workflow 'CallGenome'
[2026-06-05T14:00:14.892912Z] [nf-0f7221e1d227c1925a0ea3264828db87-8e4ce-lktzn] [697_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_003_chr4_0013] Task initiated on local node
[2026-06-05T14:00:14.893939Z] [nf-0f7221e1d227c1925a0ea3264828db87-8e4ce-lktzn] [697_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_005_chr6_0011] Task initiated on local node
[2026-06-05T14:00:14.954517Z] [nf-0f7221e1d227c1925a0ea3264828db87-8e4ce-lktzn] [697_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0013' launched from sub-workflow 'CallGenome'
[2026-06-05T14:00:14.955337Z] [nf-0f7221e1d227c1925a0ea3264828db87-8e4ce-lktzn] [697_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0009' from sub-workflow 'CallGenome'
[2026-06-05T14:00:14.958476Z] [nf-0f7221e1d227c1925a0ea3264828db87-8e4ce-lktzn] [697_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_004_chr5_0009] Task initiated on local node
[2026-06-05T14:00:15.020005Z] [nf-0f7221e1d227c1925a0ea3264828db87-8e4ce-lktzn] [697_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0009' launched from sub-workflow 'CallGenome'
[2026-06-05T14:00:15.020803Z] [nf-0f7221e1d227c1925a0ea3264828db87-8e4ce-lktzn] [697_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0006' from sub-workflow 'CallGenome'
[2026-06-05T14:00:15.024568Z] [nf-0f7221e1d227c1925a0ea3264828db87-8e4ce-lktzn] [697_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_005_chr6_0006] Task initiated on local node
[2026-06-05T14:00:15.085731Z] [nf-0f7221e1d227c1925a0ea3264828db87-8e4ce-lktzn] [697_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0006' launched from sub-workflow 'CallGenome'
[2026-06-05T14:00:15.086475Z] [nf-0f7221e1d227c1925a0ea3264828db87-8e4ce-lktzn] [697_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0010' from sub-workflow 'CallGenome'
[2026-06-05T14:00:15.090441Z] [nf-0f7221e1d227c1925a0ea3264828db87-8e4ce-lktzn] [697_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_003_chr4_0010] Task initiated on local node
[2026-06-05T14:00:15.103065Z] [nf-0f7221e1d227c1925a0ea3264828db87-8e4ce-lktzn] [697_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0004' launched from sub-workflow 'CallGenome'
[2026-06-05T14:00:15.104079Z] [nf-0f7221e1d227c1925a0ea3264828db87-8e4ce-lktzn] [697_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0001' from sub-workflow 'CallGenome'
[2026-06-05T14:00:15.107742Z] [nf-0f7221e1d227c1925a0ea3264828db87-8e4ce-lktzn] [697_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_005_chr6_0001] Task initiated on local node
[2026-06-05T14:00:15.269198Z] [nf-0f7221e1d227c1925a0ea3264828db87-8e4ce-lktzn] [697_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0001' launched from sub-workflow 'CallGenome'
[2026-06-05T14:00:15.270034Z] [nf-0f7221e1d227c1925a0ea3264828db87-8e4ce-lktzn] [697_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0001' from sub-workflow 'CallGenome'
[2026-06-05T14:00:15.273372Z] [nf-0f7221e1d227c1925a0ea3264828db87-8e4ce-lktzn] [697_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_004_chr5_0001] Task initiated on local node
[2026-06-05T14:00:15.286333Z] [nf-0f7221e1d227c1925a0ea3264828db87-8e4ce-lktzn] [697_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0015' launched from sub-workflow 'CallGenome'
[2026-06-05T14:00:15.287033Z] [nf-0f7221e1d227c1925a0ea3264828db87-8e4ce-lktzn] [697_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0015' from sub-workflow 'CallGenome'
[2026-06-05T14:00:15.290431Z] [nf-0f7221e1d227c1925a0ea3264828db87-8e4ce-lktzn] [697_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_003_chr4_0015] Task initiated on local node
[2026-06-05T14:00:15.303121Z] [nf-0f7221e1d227c1925a0ea3264828db87-8e4ce-lktzn] [697_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0001' launched from sub-workflow 'CallGenome'
[2026-06-05T14:00:15.303651Z] [nf-0f7221e1d227c1925a0ea3264828db87-8e4ce-lktzn] [697_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0004' from sub-workflow 'CallGenome'
[2026-06-05T14:00:15.306572Z] [nf-0f7221e1d227c1925a0ea3264828db87-8e4ce-lktzn] [697_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_004_chr5_0004] Task initiated on local node
[2026-06-05T14:00:15.336035Z] [nf-0f7221e1d227c1925a0ea3264828db87-8e4ce-lktzn] [697_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0015' launched from sub-workflow 'CallGenome'
[2026-06-05T14:00:15.336140Z] [nf-0f7221e1d227c1925a0ea3264828db87-8e4ce-lktzn] [697_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0004' launched from sub-workflow 'CallGenome'
[2026-06-05T14:00:15.336992Z] [nf-0f7221e1d227c1925a0ea3264828db87-8e4ce-lktzn] [697_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0003' from sub-workflow 'CallGenome'
[2026-06-05T14:00:15.337668Z] [nf-0f7221e1d227c1925a0ea3264828db87-8e4ce-lktzn] [697_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0002' from sub-workflow 'CallGenome'
[2026-06-05T14:00:15.341109Z] [nf-0f7221e1d227c1925a0ea3264828db87-8e4ce-lktzn] [697_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_004_chr5_0002] Task initiated on local node
[2026-06-05T14:00:15.342287Z] [nf-0f7221e1d227c1925a0ea3264828db87-8e4ce-lktzn] [697_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_005_chr6_0003] Task initiated on local node
[2026-06-05T14:00:15.402529Z] [nf-0f7221e1d227c1925a0ea3264828db87-8e4ce-lktzn] [697_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0002' launched from sub-workflow 'CallGenome'
[2026-06-05T14:00:15.403515Z] [nf-0f7221e1d227c1925a0ea3264828db87-8e4ce-lktzn] [697_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0012' from sub-workflow 'CallGenome'
[2026-06-05T14:00:15.406941Z] [nf-0f7221e1d227c1925a0ea3264828db87-8e4ce-lktzn] [697_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_004_chr5_0012] Task initiated on local node
[2026-06-05T14:00:15.468283Z] [nf-0f7221e1d227c1925a0ea3264828db87-8e4ce-lktzn] [697_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0012' launched from sub-workflow 'CallGenome'
[2026-06-05T14:00:15.469399Z] [nf-0f7221e1d227c1925a0ea3264828db87-8e4ce-lktzn] [697_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0013' from sub-workflow 'CallGenome'
[2026-06-05T14:00:15.472832Z] [nf-0f7221e1d227c1925a0ea3264828db87-8e4ce-lktzn] [697_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_005_chr6_0013] Task initiated on local node
[2026-06-05T14:00:15.534070Z] [nf-0f7221e1d227c1925a0ea3264828db87-8e4ce-lktzn] [697_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0013' launched from sub-workflow 'CallGenome'
[2026-06-05T14:00:15.535053Z] [nf-0f7221e1d227c1925a0ea3264828db87-8e4ce-lktzn] [697_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0013' from sub-workflow 'CallGenome'
[2026-06-05T14:00:15.538473Z] [nf-0f7221e1d227c1925a0ea3264828db87-8e4ce-lktzn] [697_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_005_chr6_0013] Task initiated on local node
[2026-06-05T14:00:15.600061Z] [nf-0f7221e1d227c1925a0ea3264828db87-8e4ce-lktzn] [697_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0013' launched from sub-workflow 'CallGenome'
[2026-06-05T14:00:15.600743Z] [nf-0f7221e1d227c1925a0ea3264828db87-8e4ce-lktzn] [697_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0014' from sub-workflow 'CallGenome'
[2026-06-05T14:00:15.603865Z] [nf-0f7221e1d227c1925a0ea3264828db87-8e4ce-lktzn] [697_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_004_chr5_0014] Task initiated on local node
[2026-06-05T14:00:15.617049Z] [nf-0f7221e1d227c1925a0ea3264828db87-8e4ce-lktzn] [697_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0007' launched from sub-workflow 'CallGenome'
[2026-06-05T14:00:15.617679Z] [nf-0f7221e1d227c1925a0ea3264828db87-8e4ce-lktzn] [697_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0007' from sub-workflow 'CallGenome'
[2026-06-05T14:00:15.620964Z] [nf-0f7221e1d227c1925a0ea3264828db87-8e4ce-lktzn] [697_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_004_chr5_0007] Task initiated on local node
[2026-06-05T14:00:15.682286Z] [nf-0f7221e1d227c1925a0ea3264828db87-8e4ce-lktzn] [697_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0007' launched from sub-workflow 'CallGenome'
[2026-06-05T14:00:15.682382Z] [nf-0f7221e1d227c1925a0ea3264828db87-8e4ce-lktzn] [697_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0000' launched from sub-workflow 'CallGenome'
[2026-06-05T14:00:15.682920Z] [nf-0f7221e1d227c1925a0ea3264828db87-8e4ce-lktzn] [697_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0000' from sub-workflow 'CallGenome'
[2026-06-05T14:00:15.686187Z] [nf-0f7221e1d227c1925a0ea3264828db87-8e4ce-lktzn] [697_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_005_chr6_0000] Task initiated on local node
[2026-06-05T14:00:15.747501Z] [nf-0f7221e1d227c1925a0ea3264828db87-8e4ce-lktzn] [697_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0000' launched from sub-workflow 'CallGenome'
[2026-06-05T14:00:16.212888Z] [nf-0f7221e1d227c1925a0ea3264828db87-8e4ce-lktzn] [697_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0010' launched from sub-workflow 'CallGenome'
[2026-06-05T14:00:16.212964Z] [nf-0f7221e1d227c1925a0ea3264828db87-8e4ce-lktzn] [697_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0001' launched from sub-workflow 'CallGenome'
[2026-06-05T14:00:16.213466Z] [nf-0f7221e1d227c1925a0ea3264828db87-8e4ce-lktzn] [697_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0010' from sub-workflow 'CallGenome'
[2026-06-05T14:00:16.213779Z] [nf-0f7221e1d227c1925a0ea3264828db87-8e4ce-lktzn] [697_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0001' from sub-workflow 'CallGenome'
[2026-06-05T14:00:16.217408Z] [nf-0f7221e1d227c1925a0ea3264828db87-8e4ce-lktzn] [697_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_005_chr6_0001] Task initiated on local node
[2026-06-05T14:00:16.217944Z] [nf-0f7221e1d227c1925a0ea3264828db87-8e4ce-lktzn] [697_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_005_chr6_0010] Task initiated on local node
[2026-06-05T14:00:16.231044Z] [nf-0f7221e1d227c1925a0ea3264828db87-8e4ce-lktzn] [697_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0010' launched from sub-workflow 'CallGenome'
[2026-06-05T14:00:16.231599Z] [nf-0f7221e1d227c1925a0ea3264828db87-8e4ce-lktzn] [697_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0010' from sub-workflow 'CallGenome'
[2026-06-05T14:00:16.234300Z] [nf-0f7221e1d227c1925a0ea3264828db87-8e4ce-lktzn] [697_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_003_chr4_0010] Task initiated on local node
[2026-06-05T14:00:16.263625Z] [nf-0f7221e1d227c1925a0ea3264828db87-8e4ce-lktzn] [697_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0001' launched from sub-workflow 'CallGenome'
[2026-06-05T14:00:16.263717Z] [nf-0f7221e1d227c1925a0ea3264828db87-8e4ce-lktzn] [697_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0010' launched from sub-workflow 'CallGenome'
[2026-06-05T14:00:16.265367Z] [nf-0f7221e1d227c1925a0ea3264828db87-8e4ce-lktzn] [697_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0010' launched from sub-workflow 'CallGenome'
[2026-06-05T14:00:16.479991Z] [nf-0f7221e1d227c1925a0ea3264828db87-8e4ce-lktzn] [697_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0011' launched from sub-workflow 'CallGenome'
[2026-06-05T14:00:16.480572Z] [nf-0f7221e1d227c1925a0ea3264828db87-8e4ce-lktzn] [697_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0011' from sub-workflow 'CallGenome'
[2026-06-05T14:00:16.484434Z] [nf-0f7221e1d227c1925a0ea3264828db87-8e4ce-lktzn] [697_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_005_chr6_0011] Task initiated on local node
[2026-06-05T14:00:16.545393Z] [nf-0f7221e1d227c1925a0ea3264828db87-8e4ce-lktzn] [697_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0011' launched from sub-workflow 'CallGenome'
[2026-06-05T14:00:16.759897Z] [nf-0f7221e1d227c1925a0ea3264828db87-8e4ce-lktzn] [697_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0014' launched from sub-workflow 'CallGenome'
[2026-06-05T14:00:16.760432Z] [nf-0f7221e1d227c1925a0ea3264828db87-8e4ce-lktzn] [697_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0014' from sub-workflow 'CallGenome'
[2026-06-05T14:00:16.763571Z] [nf-0f7221e1d227c1925a0ea3264828db87-8e4ce-lktzn] [697_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_004_chr5_0014] Task initiated on local node
[2026-06-05T14:00:16.824918Z] [nf-0f7221e1d227c1925a0ea3264828db87-8e4ce-lktzn] [697_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0014' launched from sub-workflow 'CallGenome'
[2026-06-05T14:00:17.490652Z] [nf-0f7221e1d227c1925a0ea3264828db87-8e4ce-lktzn] [697_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0003' launched from sub-workflow 'CallGenome'
[2026-06-05T14:00:17.491127Z] [nf-0f7221e1d227c1925a0ea3264828db87-8e4ce-lktzn] [697_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0003' from sub-workflow 'CallGenome'
[2026-06-05T14:00:17.494516Z] [nf-0f7221e1d227c1925a0ea3264828db87-8e4ce-lktzn] [697_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_005_chr6_0003] Task initiated on local node
[2026-06-05T14:00:17.523352Z] [nf-0f7221e1d227c1925a0ea3264828db87-8e4ce-lktzn] [697_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0003' launched from sub-workflow 'CallGenome'
[2026-06-05T14:00:17.523655Z] [nf-0f7221e1d227c1925a0ea3264828db87-8e4ce-lktzn] [697_1] [TaskManager] Completed command task: 'CallGenome+completedAllGenomeSegments' launched from sub-workflow 'CallGenome'
[2026-06-05T14:00:17.523800Z] [nf-0f7221e1d227c1925a0ea3264828db87-8e4ce-lktzn] [697_1] [TaskManager] Launching command task: 'CallGenome+Indel_concat_vcf' from sub-workflow 'CallGenome'
[2026-06-05T14:00:17.524109Z] [nf-0f7221e1d227c1925a0ea3264828db87-8e4ce-lktzn] [697_1] [TaskManager] Launching command task: 'CallGenome+mergeRunStats' from sub-workflow 'CallGenome'
[2026-06-05T14:00:17.524687Z] [nf-0f7221e1d227c1925a0ea3264828db87-8e4ce-lktzn] [697_1] [TaskManager] Launching command task: 'CallGenome+SNV_concat_vcf' from sub-workflow 'CallGenome'
[2026-06-05T14:00:17.529584Z] [nf-0f7221e1d227c1925a0ea3264828db87-8e4ce-lktzn] [697_1] [TaskRunner:CallGenome+Indel_concat_vcf] Task initiated on local node
[2026-06-05T14:00:17.529994Z] [nf-0f7221e1d227c1925a0ea3264828db87-8e4ce-lktzn] [697_1] [TaskRunner:CallGenome+SNV_concat_vcf] Task initiated on local node
[2026-06-05T14:00:17.532237Z] [nf-0f7221e1d227c1925a0ea3264828db87-8e4ce-lktzn] [697_1] [TaskRunner:CallGenome+mergeRunStats] Task initiated on local node
[2026-06-05T14:00:17.558185Z] [nf-0f7221e1d227c1925a0ea3264828db87-8e4ce-lktzn] [697_1] [TaskManager] Completed command task: 'CallGenome+SNV_concat_vcf' launched from sub-workflow 'CallGenome'
[2026-06-05T14:00:17.558262Z] [nf-0f7221e1d227c1925a0ea3264828db87-8e4ce-lktzn] [697_1] [TaskManager] Completed command task: 'CallGenome+Indel_concat_vcf' launched from sub-workflow 'CallGenome'
[2026-06-05T14:00:17.558494Z] [nf-0f7221e1d227c1925a0ea3264828db87-8e4ce-lktzn] [697_1] [TaskManager] Launching command task: 'CallGenome+Indel_index_vcf' from sub-workflow 'CallGenome'
[2026-06-05T14:00:17.558833Z] [nf-0f7221e1d227c1925a0ea3264828db87-8e4ce-lktzn] [697_1] [TaskManager] Launching command task: 'CallGenome+SNV_index_vcf' from sub-workflow 'CallGenome'
[2026-06-05T14:00:17.561489Z] [nf-0f7221e1d227c1925a0ea3264828db87-8e4ce-lktzn] [697_1] [TaskRunner:CallGenome+Indel_index_vcf] Task initiated on local node
[2026-06-05T14:00:17.562515Z] [nf-0f7221e1d227c1925a0ea3264828db87-8e4ce-lktzn] [697_1] [TaskManager] Completed command task: 'CallGenome+mergeRunStats' launched from sub-workflow 'CallGenome'
[2026-06-05T14:00:17.562708Z] [nf-0f7221e1d227c1925a0ea3264828db87-8e4ce-lktzn] [697_1] [TaskRunner:CallGenome+SNV_index_vcf] Task initiated on local node
[2026-06-05T14:00:17.594339Z] [nf-0f7221e1d227c1925a0ea3264828db87-8e4ce-lktzn] [697_1] [TaskManager] Completed command task: 'CallGenome+Indel_index_vcf' launched from sub-workflow 'CallGenome'
[2026-06-05T14:00:17.594403Z] [nf-0f7221e1d227c1925a0ea3264828db87-8e4ce-lktzn] [697_1] [TaskManager] Completed command task: 'CallGenome+SNV_index_vcf' launched from sub-workflow 'CallGenome'
[2026-06-05T14:00:17.594566Z] [nf-0f7221e1d227c1925a0ea3264828db87-8e4ce-lktzn] [697_1] [TaskManager] Launching command task: 'CallGenome+removeTmpDir' from sub-workflow 'CallGenome'
[2026-06-05T14:00:17.597575Z] [nf-0f7221e1d227c1925a0ea3264828db87-8e4ce-lktzn] [697_1] [TaskRunner:CallGenome+removeTmpDir] Task initiated on local node
[2026-06-05T14:00:17.626820Z] [nf-0f7221e1d227c1925a0ea3264828db87-8e4ce-lktzn] [697_1] [TaskManager] Completed command task: 'CallGenome+removeTmpDir' launched from sub-workflow 'CallGenome'
[2026-06-05T14:00:18.192201Z] [nf-0f7221e1d227c1925a0ea3264828db87-8e4ce-lktzn] [697_1] [TaskManager] Completed sub-workflow task: 'CallGenome' launched from master workflow
[2026-06-05T14:00:26.431475Z] [nf-0f7221e1d227c1925a0ea3264828db87-8e4ce-lktzn] [697_1] [WorkflowRunner] Strelka somatic workflow successfully completed.
[2026-06-05T14:00:26.431475Z] [nf-0f7221e1d227c1925a0ea3264828db87-8e4ce-lktzn] [697_1] [WorkflowRunner] 
[2026-06-05T14:00:26.431475Z] [nf-0f7221e1d227c1925a0ea3264828db87-8e4ce-lktzn] [697_1] [WorkflowRunner] 	workflow version: 2.9.10
[2026-06-05T14:00:26.431565Z] [nf-0f7221e1d227c1925a0ea3264828db87-8e4ce-lktzn] [697_1] [WorkflowRunner] 
[2026-06-05T14:00:26.431573Z] [nf-0f7221e1d227c1925a0ea3264828db87-8e4ce-lktzn] [697_1] [WorkflowRunner] Workflow successfully completed all tasks
[2026-06-05T14:00:26.431580Z] [nf-0f7221e1d227c1925a0ea3264828db87-8e4ce-lktzn] [697_1] [WorkflowRunner] Elapsed time for full workflow: 18 sec