.command.err - Workdir - DAQ:CONTROL_VARIANT_CALLING:CONTROL_SOMATIC_VC:BAM_VARIANT_CALLING_SOMATIC_STRELKA:STRELKA_SOMATIC (positive_somatic_control_1;chr1_68991-70108.bed)

File Info

Filename: .command.err
Full Path: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/2e/f7dd6bba0bddc9c636c1f3fb26bad8/.command.err
Size: 63.3 KB
Task: DAQ:CONTROL_VARIANT_CALLING:CONTROL_SOMATIC_VC:BAM_VARIANT_CALLING_SOMATIC_STRELKA:STRELKA_SOMATIC (positive_somatic_control_1;chr1_68991-70108.bed)
Attempt
Content

[2026-06-05T14:00:00.626954Z] [nf-2ef7dd6bba0bddc9c636c1f3fb26bad8-47e1f-5ljpl] [627_1] [WorkflowRunner] Initiating pyFlow run
[2026-06-05T14:00:00.627584Z] [nf-2ef7dd6bba0bddc9c636c1f3fb26bad8-47e1f-5ljpl] [627_1] [WorkflowRunner] pyFlowClientWorkflowClass: StrelkaSomaticWorkflow
[2026-06-05T14:00:00.627599Z] [nf-2ef7dd6bba0bddc9c636c1f3fb26bad8-47e1f-5ljpl] [627_1] [WorkflowRunner] pyFlowVersion: 1.1.20
[2026-06-05T14:00:00.627605Z] [nf-2ef7dd6bba0bddc9c636c1f3fb26bad8-47e1f-5ljpl] [627_1] [WorkflowRunner] pythonVersion: 2.7.15.final.0
[2026-06-05T14:00:00.627610Z] [nf-2ef7dd6bba0bddc9c636c1f3fb26bad8-47e1f-5ljpl] [627_1] [WorkflowRunner] WorkingDir: '/tmp/nxf.XXXXYF95Aw'
[2026-06-05T14:00:00.627614Z] [nf-2ef7dd6bba0bddc9c636c1f3fb26bad8-47e1f-5ljpl] [627_1] [WorkflowRunner] ProcessCmdLine: '/var/tmp/strelka/runWorkflow.py -m local -j 8'
[2026-06-05T14:00:00.627621Z] [nf-2ef7dd6bba0bddc9c636c1f3fb26bad8-47e1f-5ljpl] [627_1] [WorkflowRunner] [RunParameters] mode: local
[2026-06-05T14:00:00.627624Z] [nf-2ef7dd6bba0bddc9c636c1f3fb26bad8-47e1f-5ljpl] [627_1] [WorkflowRunner] [RunParameters] nCores: 8
[2026-06-05T14:00:00.627628Z] [nf-2ef7dd6bba0bddc9c636c1f3fb26bad8-47e1f-5ljpl] [627_1] [WorkflowRunner] [RunParameters] memMb: 3047507
[2026-06-05T14:00:00.627632Z] [nf-2ef7dd6bba0bddc9c636c1f3fb26bad8-47e1f-5ljpl] [627_1] [WorkflowRunner] [RunParameters] dataDir: /var/tmp/strelka/workspace/pyflow.data
[2026-06-05T14:00:00.627636Z] [nf-2ef7dd6bba0bddc9c636c1f3fb26bad8-47e1f-5ljpl] [627_1] [WorkflowRunner] [RunParameters] isDryRun: False
[2026-06-05T14:00:00.627639Z] [nf-2ef7dd6bba0bddc9c636c1f3fb26bad8-47e1f-5ljpl] [627_1] [WorkflowRunner] [RunParameters] isContinue: False
[2026-06-05T14:00:00.627643Z] [nf-2ef7dd6bba0bddc9c636c1f3fb26bad8-47e1f-5ljpl] [627_1] [WorkflowRunner] [RunParameters] isForceContinue: True
[2026-06-05T14:00:00.627647Z] [nf-2ef7dd6bba0bddc9c636c1f3fb26bad8-47e1f-5ljpl] [627_1] [WorkflowRunner] [RunParameters] mailTo: ''
[2026-06-05T14:00:00.628413Z] [nf-2ef7dd6bba0bddc9c636c1f3fb26bad8-47e1f-5ljpl] [627_1] [TaskRunner:masterWorkflow] Starting task specification for master workflow
[2026-06-05T14:00:00.628594Z] [nf-2ef7dd6bba0bddc9c636c1f3fb26bad8-47e1f-5ljpl] [627_1] [StrelkaSomaticWorkflow] Initiating Strelka somatic workflow version: 2.9.10
[2026-06-05T14:00:00.635503Z] [nf-2ef7dd6bba0bddc9c636c1f3fb26bad8-47e1f-5ljpl] [627_1] [WorkflowRunner] Adding sub-workflow task 'CallGenome' to master workflow
[2026-06-05T14:00:00.636562Z] [nf-2ef7dd6bba0bddc9c636c1f3fb26bad8-47e1f-5ljpl] [627_1] [TaskManager] Launching sub-workflow task: 'CallGenome' from master workflow
[2026-06-05T14:00:00.636970Z] [nf-2ef7dd6bba0bddc9c636c1f3fb26bad8-47e1f-5ljpl] [627_1] [TaskRunner:masterWorkflow] Finished task specification for master workflow
[2026-06-05T14:00:00.637141Z] [nf-2ef7dd6bba0bddc9c636c1f3fb26bad8-47e1f-5ljpl] [627_1] [TaskRunner:CallGenome] Starting task specification for sub-workflow
[2026-06-05T14:00:00.637412Z] [nf-2ef7dd6bba0bddc9c636c1f3fb26bad8-47e1f-5ljpl] [627_1] [WorkflowRunner] Adding command task 'CallGenome+makeTmpDir' to sub-workflow 'CallGenome'
[2026-06-05T14:00:00.637769Z] [nf-2ef7dd6bba0bddc9c636c1f3fb26bad8-47e1f-5ljpl] [627_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0000' to sub-workflow 'CallGenome'
[2026-06-05T14:00:00.637862Z] [nf-2ef7dd6bba0bddc9c636c1f3fb26bad8-47e1f-5ljpl] [627_1] [WorkflowRunner] Adding command task 'CallGenome+fixVcfHeader_chromId_000_chr1_0000' to sub-workflow 'CallGenome'
[2026-06-05T14:00:00.637937Z] [nf-2ef7dd6bba0bddc9c636c1f3fb26bad8-47e1f-5ljpl] [627_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0000' to sub-workflow 'CallGenome'
[2026-06-05T14:00:00.638058Z] [nf-2ef7dd6bba0bddc9c636c1f3fb26bad8-47e1f-5ljpl] [627_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0001' to sub-workflow 'CallGenome'
[2026-06-05T14:00:00.638128Z] [nf-2ef7dd6bba0bddc9c636c1f3fb26bad8-47e1f-5ljpl] [627_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0001' to sub-workflow 'CallGenome'
[2026-06-05T14:00:00.638248Z] [nf-2ef7dd6bba0bddc9c636c1f3fb26bad8-47e1f-5ljpl] [627_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0002' to sub-workflow 'CallGenome'
[2026-06-05T14:00:00.638312Z] [nf-2ef7dd6bba0bddc9c636c1f3fb26bad8-47e1f-5ljpl] [627_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0002' to sub-workflow 'CallGenome'
[2026-06-05T14:00:00.638438Z] [nf-2ef7dd6bba0bddc9c636c1f3fb26bad8-47e1f-5ljpl] [627_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0003' to sub-workflow 'CallGenome'
[2026-06-05T14:00:00.638502Z] [nf-2ef7dd6bba0bddc9c636c1f3fb26bad8-47e1f-5ljpl] [627_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0003' to sub-workflow 'CallGenome'
[2026-06-05T14:00:00.638819Z] [nf-2ef7dd6bba0bddc9c636c1f3fb26bad8-47e1f-5ljpl] [627_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0004' to sub-workflow 'CallGenome'
[2026-06-05T14:00:00.639190Z] [nf-2ef7dd6bba0bddc9c636c1f3fb26bad8-47e1f-5ljpl] [627_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0004' to sub-workflow 'CallGenome'
[2026-06-05T14:00:00.639655Z] [nf-2ef7dd6bba0bddc9c636c1f3fb26bad8-47e1f-5ljpl] [627_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0005' to sub-workflow 'CallGenome'
[2026-06-05T14:00:00.639816Z] [nf-2ef7dd6bba0bddc9c636c1f3fb26bad8-47e1f-5ljpl] [627_1] [TaskManager] Launching command task: 'CallGenome+makeTmpDir' from sub-workflow 'CallGenome'
[2026-06-05T14:00:00.640034Z] [nf-2ef7dd6bba0bddc9c636c1f3fb26bad8-47e1f-5ljpl] [627_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0005' to sub-workflow 'CallGenome'
[2026-06-05T14:00:00.640260Z] [nf-2ef7dd6bba0bddc9c636c1f3fb26bad8-47e1f-5ljpl] [627_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0006' to sub-workflow 'CallGenome'
[2026-06-05T14:00:00.641065Z] [nf-2ef7dd6bba0bddc9c636c1f3fb26bad8-47e1f-5ljpl] [627_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0006' to sub-workflow 'CallGenome'
[2026-06-05T14:00:00.643906Z] [nf-2ef7dd6bba0bddc9c636c1f3fb26bad8-47e1f-5ljpl] [627_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0007' to sub-workflow 'CallGenome'
[2026-06-05T14:00:00.644708Z] [nf-2ef7dd6bba0bddc9c636c1f3fb26bad8-47e1f-5ljpl] [627_1] [TaskRunner:CallGenome+makeTmpDir] Task initiated on local node
[2026-06-05T14:00:00.644842Z] [nf-2ef7dd6bba0bddc9c636c1f3fb26bad8-47e1f-5ljpl] [627_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0007' to sub-workflow 'CallGenome'
[2026-06-05T14:00:00.645133Z] [nf-2ef7dd6bba0bddc9c636c1f3fb26bad8-47e1f-5ljpl] [627_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0008' to sub-workflow 'CallGenome'
[2026-06-05T14:00:00.645210Z] [nf-2ef7dd6bba0bddc9c636c1f3fb26bad8-47e1f-5ljpl] [627_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0008' to sub-workflow 'CallGenome'
[2026-06-05T14:00:00.645340Z] [nf-2ef7dd6bba0bddc9c636c1f3fb26bad8-47e1f-5ljpl] [627_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0009' to sub-workflow 'CallGenome'
[2026-06-05T14:00:00.645498Z] [nf-2ef7dd6bba0bddc9c636c1f3fb26bad8-47e1f-5ljpl] [627_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0009' to sub-workflow 'CallGenome'
[2026-06-05T14:00:00.645809Z] [nf-2ef7dd6bba0bddc9c636c1f3fb26bad8-47e1f-5ljpl] [627_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0010' to sub-workflow 'CallGenome'
[2026-06-05T14:00:00.646111Z] [nf-2ef7dd6bba0bddc9c636c1f3fb26bad8-47e1f-5ljpl] [627_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0010' to sub-workflow 'CallGenome'
[2026-06-05T14:00:00.646235Z] [nf-2ef7dd6bba0bddc9c636c1f3fb26bad8-47e1f-5ljpl] [627_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0011' to sub-workflow 'CallGenome'
[2026-06-05T14:00:00.646304Z] [nf-2ef7dd6bba0bddc9c636c1f3fb26bad8-47e1f-5ljpl] [627_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0011' to sub-workflow 'CallGenome'
[2026-06-05T14:00:00.646419Z] [nf-2ef7dd6bba0bddc9c636c1f3fb26bad8-47e1f-5ljpl] [627_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0012' to sub-workflow 'CallGenome'
[2026-06-05T14:00:00.646487Z] [nf-2ef7dd6bba0bddc9c636c1f3fb26bad8-47e1f-5ljpl] [627_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0012' to sub-workflow 'CallGenome'
[2026-06-05T14:00:00.646596Z] [nf-2ef7dd6bba0bddc9c636c1f3fb26bad8-47e1f-5ljpl] [627_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0013' to sub-workflow 'CallGenome'
[2026-06-05T14:00:00.646663Z] [nf-2ef7dd6bba0bddc9c636c1f3fb26bad8-47e1f-5ljpl] [627_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0013' to sub-workflow 'CallGenome'
[2026-06-05T14:00:00.646782Z] [nf-2ef7dd6bba0bddc9c636c1f3fb26bad8-47e1f-5ljpl] [627_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0014' to sub-workflow 'CallGenome'
[2026-06-05T14:00:00.646843Z] [nf-2ef7dd6bba0bddc9c636c1f3fb26bad8-47e1f-5ljpl] [627_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0014' to sub-workflow 'CallGenome'
[2026-06-05T14:00:00.646954Z] [nf-2ef7dd6bba0bddc9c636c1f3fb26bad8-47e1f-5ljpl] [627_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0015' to sub-workflow 'CallGenome'
[2026-06-05T14:00:00.647019Z] [nf-2ef7dd6bba0bddc9c636c1f3fb26bad8-47e1f-5ljpl] [627_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0015' to sub-workflow 'CallGenome'
[2026-06-05T14:00:00.647291Z] [nf-2ef7dd6bba0bddc9c636c1f3fb26bad8-47e1f-5ljpl] [627_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0016' to sub-workflow 'CallGenome'
[2026-06-05T14:00:00.647620Z] [nf-2ef7dd6bba0bddc9c636c1f3fb26bad8-47e1f-5ljpl] [627_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0016' to sub-workflow 'CallGenome'
[2026-06-05T14:00:00.647741Z] [nf-2ef7dd6bba0bddc9c636c1f3fb26bad8-47e1f-5ljpl] [627_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0017' to sub-workflow 'CallGenome'
[2026-06-05T14:00:00.647821Z] [nf-2ef7dd6bba0bddc9c636c1f3fb26bad8-47e1f-5ljpl] [627_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0017' to sub-workflow 'CallGenome'
[2026-06-05T14:00:00.647936Z] [nf-2ef7dd6bba0bddc9c636c1f3fb26bad8-47e1f-5ljpl] [627_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0018' to sub-workflow 'CallGenome'
[2026-06-05T14:00:00.647997Z] [nf-2ef7dd6bba0bddc9c636c1f3fb26bad8-47e1f-5ljpl] [627_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0018' to sub-workflow 'CallGenome'
[2026-06-05T14:00:00.648107Z] [nf-2ef7dd6bba0bddc9c636c1f3fb26bad8-47e1f-5ljpl] [627_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0019' to sub-workflow 'CallGenome'
[2026-06-05T14:00:00.648171Z] [nf-2ef7dd6bba0bddc9c636c1f3fb26bad8-47e1f-5ljpl] [627_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0019' to sub-workflow 'CallGenome'
[2026-06-05T14:00:00.648687Z] [nf-2ef7dd6bba0bddc9c636c1f3fb26bad8-47e1f-5ljpl] [627_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0020' to sub-workflow 'CallGenome'
[2026-06-05T14:00:00.649104Z] [nf-2ef7dd6bba0bddc9c636c1f3fb26bad8-47e1f-5ljpl] [627_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0020' to sub-workflow 'CallGenome'
[2026-06-05T14:00:00.649221Z] [nf-2ef7dd6bba0bddc9c636c1f3fb26bad8-47e1f-5ljpl] [627_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0000' to sub-workflow 'CallGenome'
[2026-06-05T14:00:00.649285Z] [nf-2ef7dd6bba0bddc9c636c1f3fb26bad8-47e1f-5ljpl] [627_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0000' to sub-workflow 'CallGenome'
[2026-06-05T14:00:00.649458Z] [nf-2ef7dd6bba0bddc9c636c1f3fb26bad8-47e1f-5ljpl] [627_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0001' to sub-workflow 'CallGenome'
[2026-06-05T14:00:00.649526Z] [nf-2ef7dd6bba0bddc9c636c1f3fb26bad8-47e1f-5ljpl] [627_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0001' to sub-workflow 'CallGenome'
[2026-06-05T14:00:00.649633Z] [nf-2ef7dd6bba0bddc9c636c1f3fb26bad8-47e1f-5ljpl] [627_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0002' to sub-workflow 'CallGenome'
[2026-06-05T14:00:00.649695Z] [nf-2ef7dd6bba0bddc9c636c1f3fb26bad8-47e1f-5ljpl] [627_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0002' to sub-workflow 'CallGenome'
[2026-06-05T14:00:00.649808Z] [nf-2ef7dd6bba0bddc9c636c1f3fb26bad8-47e1f-5ljpl] [627_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0003' to sub-workflow 'CallGenome'
[2026-06-05T14:00:00.649869Z] [nf-2ef7dd6bba0bddc9c636c1f3fb26bad8-47e1f-5ljpl] [627_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0003' to sub-workflow 'CallGenome'
[2026-06-05T14:00:00.650015Z] [nf-2ef7dd6bba0bddc9c636c1f3fb26bad8-47e1f-5ljpl] [627_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0004' to sub-workflow 'CallGenome'
[2026-06-05T14:00:00.650076Z] [nf-2ef7dd6bba0bddc9c636c1f3fb26bad8-47e1f-5ljpl] [627_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0004' to sub-workflow 'CallGenome'
[2026-06-05T14:00:00.650428Z] [nf-2ef7dd6bba0bddc9c636c1f3fb26bad8-47e1f-5ljpl] [627_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0005' to sub-workflow 'CallGenome'
[2026-06-05T14:00:00.650911Z] [nf-2ef7dd6bba0bddc9c636c1f3fb26bad8-47e1f-5ljpl] [627_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0005' to sub-workflow 'CallGenome'
[2026-06-05T14:00:00.651027Z] [nf-2ef7dd6bba0bddc9c636c1f3fb26bad8-47e1f-5ljpl] [627_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0006' to sub-workflow 'CallGenome'
[2026-06-05T14:00:00.651091Z] [nf-2ef7dd6bba0bddc9c636c1f3fb26bad8-47e1f-5ljpl] [627_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0006' to sub-workflow 'CallGenome'
[2026-06-05T14:00:00.651205Z] [nf-2ef7dd6bba0bddc9c636c1f3fb26bad8-47e1f-5ljpl] [627_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0007' to sub-workflow 'CallGenome'
[2026-06-05T14:00:00.651266Z] [nf-2ef7dd6bba0bddc9c636c1f3fb26bad8-47e1f-5ljpl] [627_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0007' to sub-workflow 'CallGenome'
[2026-06-05T14:00:00.651379Z] [nf-2ef7dd6bba0bddc9c636c1f3fb26bad8-47e1f-5ljpl] [627_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0008' to sub-workflow 'CallGenome'
[2026-06-05T14:00:00.651445Z] [nf-2ef7dd6bba0bddc9c636c1f3fb26bad8-47e1f-5ljpl] [627_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0008' to sub-workflow 'CallGenome'
[2026-06-05T14:00:00.651550Z] [nf-2ef7dd6bba0bddc9c636c1f3fb26bad8-47e1f-5ljpl] [627_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0009' to sub-workflow 'CallGenome'
[2026-06-05T14:00:00.651624Z] [nf-2ef7dd6bba0bddc9c636c1f3fb26bad8-47e1f-5ljpl] [627_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0009' to sub-workflow 'CallGenome'
[2026-06-05T14:00:00.651738Z] [nf-2ef7dd6bba0bddc9c636c1f3fb26bad8-47e1f-5ljpl] [627_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0010' to sub-workflow 'CallGenome'
[2026-06-05T14:00:00.651816Z] [nf-2ef7dd6bba0bddc9c636c1f3fb26bad8-47e1f-5ljpl] [627_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0010' to sub-workflow 'CallGenome'
[2026-06-05T14:00:00.669288Z] [nf-2ef7dd6bba0bddc9c636c1f3fb26bad8-47e1f-5ljpl] [627_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0011' to sub-workflow 'CallGenome'
[2026-06-05T14:00:00.669414Z] [nf-2ef7dd6bba0bddc9c636c1f3fb26bad8-47e1f-5ljpl] [627_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0011' to sub-workflow 'CallGenome'
[2026-06-05T14:00:00.669487Z] [nf-2ef7dd6bba0bddc9c636c1f3fb26bad8-47e1f-5ljpl] [627_1] [WorkflowRunner] Adding command task 'CallGenome+completedAllGenomeSegments' to sub-workflow 'CallGenome'
[2026-06-05T14:00:00.669673Z] [nf-2ef7dd6bba0bddc9c636c1f3fb26bad8-47e1f-5ljpl] [627_1] [WorkflowRunner] Adding command task 'CallGenome+SNV_concat_vcf' to sub-workflow 'CallGenome'
[2026-06-05T14:00:00.669744Z] [nf-2ef7dd6bba0bddc9c636c1f3fb26bad8-47e1f-5ljpl] [627_1] [WorkflowRunner] Adding command task 'CallGenome+SNV_index_vcf' to sub-workflow 'CallGenome'
[2026-06-05T14:00:00.669847Z] [nf-2ef7dd6bba0bddc9c636c1f3fb26bad8-47e1f-5ljpl] [627_1] [WorkflowRunner] Adding command task 'CallGenome+Indel_concat_vcf' to sub-workflow 'CallGenome'
[2026-06-05T14:00:00.669921Z] [nf-2ef7dd6bba0bddc9c636c1f3fb26bad8-47e1f-5ljpl] [627_1] [WorkflowRunner] Adding command task 'CallGenome+Indel_index_vcf' to sub-workflow 'CallGenome'
[2026-06-05T14:00:00.671866Z] [nf-2ef7dd6bba0bddc9c636c1f3fb26bad8-47e1f-5ljpl] [627_1] [WorkflowRunner] Adding command task 'CallGenome+mergeRunStats' to sub-workflow 'CallGenome'
[2026-06-05T14:00:00.672537Z] [nf-2ef7dd6bba0bddc9c636c1f3fb26bad8-47e1f-5ljpl] [627_1] [WorkflowRunner] Adding command task 'CallGenome+removeTmpDir' to sub-workflow 'CallGenome'
[2026-06-05T14:00:00.672619Z] [nf-2ef7dd6bba0bddc9c636c1f3fb26bad8-47e1f-5ljpl] [627_1] [TaskRunner:CallGenome] Finished task specification for sub-workflow
[2026-06-05T14:00:00.673757Z] [nf-2ef7dd6bba0bddc9c636c1f3fb26bad8-47e1f-5ljpl] [627_1] [TaskManager] Completed command task: 'CallGenome+makeTmpDir' launched from sub-workflow 'CallGenome'
[2026-06-05T14:00:00.674626Z] [nf-2ef7dd6bba0bddc9c636c1f3fb26bad8-47e1f-5ljpl] [627_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0000' from sub-workflow 'CallGenome'
[2026-06-05T14:00:00.675048Z] [nf-2ef7dd6bba0bddc9c636c1f3fb26bad8-47e1f-5ljpl] [627_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0018' from sub-workflow 'CallGenome'
[2026-06-05T14:00:00.675888Z] [nf-2ef7dd6bba0bddc9c636c1f3fb26bad8-47e1f-5ljpl] [627_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0003' from sub-workflow 'CallGenome'
[2026-06-05T14:00:00.676614Z] [nf-2ef7dd6bba0bddc9c636c1f3fb26bad8-47e1f-5ljpl] [627_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0019' from sub-workflow 'CallGenome'
[2026-06-05T14:00:00.677722Z] [nf-2ef7dd6bba0bddc9c636c1f3fb26bad8-47e1f-5ljpl] [627_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0005' from sub-workflow 'CallGenome'
[2026-06-05T14:00:00.680083Z] [nf-2ef7dd6bba0bddc9c636c1f3fb26bad8-47e1f-5ljpl] [627_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0003' from sub-workflow 'CallGenome'
[2026-06-05T14:00:00.682730Z] [nf-2ef7dd6bba0bddc9c636c1f3fb26bad8-47e1f-5ljpl] [627_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0001' from sub-workflow 'CallGenome'
[2026-06-05T14:00:00.685783Z] [nf-2ef7dd6bba0bddc9c636c1f3fb26bad8-47e1f-5ljpl] [627_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0000] Task initiated on local node
[2026-06-05T14:00:00.688505Z] [nf-2ef7dd6bba0bddc9c636c1f3fb26bad8-47e1f-5ljpl] [627_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0018] Task initiated on local node
[2026-06-05T14:00:00.694221Z] [nf-2ef7dd6bba0bddc9c636c1f3fb26bad8-47e1f-5ljpl] [627_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0003] Task initiated on local node
[2026-06-05T14:00:00.697604Z] [nf-2ef7dd6bba0bddc9c636c1f3fb26bad8-47e1f-5ljpl] [627_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0019] Task initiated on local node
[2026-06-05T14:00:00.698183Z] [nf-2ef7dd6bba0bddc9c636c1f3fb26bad8-47e1f-5ljpl] [627_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0005] Task initiated on local node
[2026-06-05T14:00:00.701639Z] [nf-2ef7dd6bba0bddc9c636c1f3fb26bad8-47e1f-5ljpl] [627_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0000' from sub-workflow 'CallGenome'
[2026-06-05T14:00:00.702311Z] [nf-2ef7dd6bba0bddc9c636c1f3fb26bad8-47e1f-5ljpl] [627_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0003] Task initiated on local node
[2026-06-05T14:00:00.707087Z] [nf-2ef7dd6bba0bddc9c636c1f3fb26bad8-47e1f-5ljpl] [627_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0001] Task initiated on local node
[2026-06-05T14:00:00.710106Z] [nf-2ef7dd6bba0bddc9c636c1f3fb26bad8-47e1f-5ljpl] [627_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0000] Task initiated on local node
[2026-06-05T14:00:01.570742Z] [nf-2ef7dd6bba0bddc9c636c1f3fb26bad8-47e1f-5ljpl] [627_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0003' launched from sub-workflow 'CallGenome'
[2026-06-05T14:00:01.571711Z] [nf-2ef7dd6bba0bddc9c636c1f3fb26bad8-47e1f-5ljpl] [627_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0009' from sub-workflow 'CallGenome'
[2026-06-05T14:00:01.575301Z] [nf-2ef7dd6bba0bddc9c636c1f3fb26bad8-47e1f-5ljpl] [627_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0009] Task initiated on local node
[2026-06-05T14:00:01.787376Z] [nf-2ef7dd6bba0bddc9c636c1f3fb26bad8-47e1f-5ljpl] [627_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0000' launched from sub-workflow 'CallGenome'
[2026-06-05T14:00:01.788293Z] [nf-2ef7dd6bba0bddc9c636c1f3fb26bad8-47e1f-5ljpl] [627_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0014' from sub-workflow 'CallGenome'
[2026-06-05T14:00:01.792111Z] [nf-2ef7dd6bba0bddc9c636c1f3fb26bad8-47e1f-5ljpl] [627_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0014] Task initiated on local node
[2026-06-05T14:00:02.404763Z] [nf-2ef7dd6bba0bddc9c636c1f3fb26bad8-47e1f-5ljpl] [627_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0018' launched from sub-workflow 'CallGenome'
[2026-06-05T14:00:02.405727Z] [nf-2ef7dd6bba0bddc9c636c1f3fb26bad8-47e1f-5ljpl] [627_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0008' from sub-workflow 'CallGenome'
[2026-06-05T14:00:02.409605Z] [nf-2ef7dd6bba0bddc9c636c1f3fb26bad8-47e1f-5ljpl] [627_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0008] Task initiated on local node
[2026-06-05T14:00:02.470448Z] [nf-2ef7dd6bba0bddc9c636c1f3fb26bad8-47e1f-5ljpl] [627_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0008' launched from sub-workflow 'CallGenome'
[2026-06-05T14:00:02.471365Z] [nf-2ef7dd6bba0bddc9c636c1f3fb26bad8-47e1f-5ljpl] [627_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0006' from sub-workflow 'CallGenome'
[2026-06-05T14:00:02.475002Z] [nf-2ef7dd6bba0bddc9c636c1f3fb26bad8-47e1f-5ljpl] [627_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0006] Task initiated on local node
[2026-06-05T14:00:02.988135Z] [nf-2ef7dd6bba0bddc9c636c1f3fb26bad8-47e1f-5ljpl] [627_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0005' launched from sub-workflow 'CallGenome'
[2026-06-05T14:00:02.989125Z] [nf-2ef7dd6bba0bddc9c636c1f3fb26bad8-47e1f-5ljpl] [627_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0005' from sub-workflow 'CallGenome'
[2026-06-05T14:00:02.992414Z] [nf-2ef7dd6bba0bddc9c636c1f3fb26bad8-47e1f-5ljpl] [627_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0005] Task initiated on local node
[2026-06-05T14:00:03.053930Z] [nf-2ef7dd6bba0bddc9c636c1f3fb26bad8-47e1f-5ljpl] [627_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0005' launched from sub-workflow 'CallGenome'
[2026-06-05T14:00:03.054870Z] [nf-2ef7dd6bba0bddc9c636c1f3fb26bad8-47e1f-5ljpl] [627_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0011' from sub-workflow 'CallGenome'
[2026-06-05T14:00:03.058637Z] [nf-2ef7dd6bba0bddc9c636c1f3fb26bad8-47e1f-5ljpl] [627_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0011] Task initiated on local node
[2026-06-05T14:00:03.120129Z] [nf-2ef7dd6bba0bddc9c636c1f3fb26bad8-47e1f-5ljpl] [627_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0011' launched from sub-workflow 'CallGenome'
[2026-06-05T14:00:03.121120Z] [nf-2ef7dd6bba0bddc9c636c1f3fb26bad8-47e1f-5ljpl] [627_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0011' from sub-workflow 'CallGenome'
[2026-06-05T14:00:03.124315Z] [nf-2ef7dd6bba0bddc9c636c1f3fb26bad8-47e1f-5ljpl] [627_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0011] Task initiated on local node
[2026-06-05T14:00:03.185753Z] [nf-2ef7dd6bba0bddc9c636c1f3fb26bad8-47e1f-5ljpl] [627_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0011' launched from sub-workflow 'CallGenome'
[2026-06-05T14:00:03.186757Z] [nf-2ef7dd6bba0bddc9c636c1f3fb26bad8-47e1f-5ljpl] [627_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0016' from sub-workflow 'CallGenome'
[2026-06-05T14:00:03.190522Z] [nf-2ef7dd6bba0bddc9c636c1f3fb26bad8-47e1f-5ljpl] [627_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0016] Task initiated on local node
[2026-06-05T14:00:03.251853Z] [nf-2ef7dd6bba0bddc9c636c1f3fb26bad8-47e1f-5ljpl] [627_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0000' launched from sub-workflow 'CallGenome'
[2026-06-05T14:00:03.252922Z] [nf-2ef7dd6bba0bddc9c636c1f3fb26bad8-47e1f-5ljpl] [627_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0005' from sub-workflow 'CallGenome'
[2026-06-05T14:00:03.257020Z] [nf-2ef7dd6bba0bddc9c636c1f3fb26bad8-47e1f-5ljpl] [627_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0005] Task initiated on local node
[2026-06-05T14:00:03.418117Z] [nf-2ef7dd6bba0bddc9c636c1f3fb26bad8-47e1f-5ljpl] [627_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0019' launched from sub-workflow 'CallGenome'
[2026-06-05T14:00:03.418973Z] [nf-2ef7dd6bba0bddc9c636c1f3fb26bad8-47e1f-5ljpl] [627_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0008' from sub-workflow 'CallGenome'
[2026-06-05T14:00:03.422528Z] [nf-2ef7dd6bba0bddc9c636c1f3fb26bad8-47e1f-5ljpl] [627_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0008] Task initiated on local node
[2026-06-05T14:00:03.483785Z] [nf-2ef7dd6bba0bddc9c636c1f3fb26bad8-47e1f-5ljpl] [627_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0008' launched from sub-workflow 'CallGenome'
[2026-06-05T14:00:03.484605Z] [nf-2ef7dd6bba0bddc9c636c1f3fb26bad8-47e1f-5ljpl] [627_1] [TaskManager] Launching command task: 'CallGenome+fixVcfHeader_chromId_000_chr1_0000' from sub-workflow 'CallGenome'
[2026-06-05T14:00:03.488455Z] [nf-2ef7dd6bba0bddc9c636c1f3fb26bad8-47e1f-5ljpl] [627_1] [TaskRunner:CallGenome+fixVcfHeader_chromId_000_chr1_0000] Task initiated on local node
[2026-06-05T14:00:03.549269Z] [nf-2ef7dd6bba0bddc9c636c1f3fb26bad8-47e1f-5ljpl] [627_1] [TaskManager] Completed command task: 'CallGenome+fixVcfHeader_chromId_000_chr1_0000' launched from sub-workflow 'CallGenome'
[2026-06-05T14:00:03.550165Z] [nf-2ef7dd6bba0bddc9c636c1f3fb26bad8-47e1f-5ljpl] [627_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0010' from sub-workflow 'CallGenome'
[2026-06-05T14:00:03.554096Z] [nf-2ef7dd6bba0bddc9c636c1f3fb26bad8-47e1f-5ljpl] [627_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0010] Task initiated on local node
[2026-06-05T14:00:03.665730Z] [nf-2ef7dd6bba0bddc9c636c1f3fb26bad8-47e1f-5ljpl] [627_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0010' launched from sub-workflow 'CallGenome'
[2026-06-05T14:00:03.666548Z] [nf-2ef7dd6bba0bddc9c636c1f3fb26bad8-47e1f-5ljpl] [627_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0010' from sub-workflow 'CallGenome'
[2026-06-05T14:00:03.669850Z] [nf-2ef7dd6bba0bddc9c636c1f3fb26bad8-47e1f-5ljpl] [627_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0010] Task initiated on local node
[2026-06-05T14:00:03.731405Z] [nf-2ef7dd6bba0bddc9c636c1f3fb26bad8-47e1f-5ljpl] [627_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0010' launched from sub-workflow 'CallGenome'
[2026-06-05T14:00:03.732346Z] [nf-2ef7dd6bba0bddc9c636c1f3fb26bad8-47e1f-5ljpl] [627_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0003' from sub-workflow 'CallGenome'
[2026-06-05T14:00:03.736574Z] [nf-2ef7dd6bba0bddc9c636c1f3fb26bad8-47e1f-5ljpl] [627_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0003] Task initiated on local node
[2026-06-05T14:00:03.797833Z] [nf-2ef7dd6bba0bddc9c636c1f3fb26bad8-47e1f-5ljpl] [627_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0003' launched from sub-workflow 'CallGenome'
[2026-06-05T14:00:03.798772Z] [nf-2ef7dd6bba0bddc9c636c1f3fb26bad8-47e1f-5ljpl] [627_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0000' from sub-workflow 'CallGenome'
[2026-06-05T14:00:03.802532Z] [nf-2ef7dd6bba0bddc9c636c1f3fb26bad8-47e1f-5ljpl] [627_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0000] Task initiated on local node
[2026-06-05T14:00:03.815404Z] [nf-2ef7dd6bba0bddc9c636c1f3fb26bad8-47e1f-5ljpl] [627_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0003' launched from sub-workflow 'CallGenome'
[2026-06-05T14:00:03.816229Z] [nf-2ef7dd6bba0bddc9c636c1f3fb26bad8-47e1f-5ljpl] [627_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0017' from sub-workflow 'CallGenome'
[2026-06-05T14:00:03.819616Z] [nf-2ef7dd6bba0bddc9c636c1f3fb26bad8-47e1f-5ljpl] [627_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0017] Task initiated on local node
[2026-06-05T14:00:03.848817Z] [nf-2ef7dd6bba0bddc9c636c1f3fb26bad8-47e1f-5ljpl] [627_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0000' launched from sub-workflow 'CallGenome'
[2026-06-05T14:00:03.849641Z] [nf-2ef7dd6bba0bddc9c636c1f3fb26bad8-47e1f-5ljpl] [627_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0007' from sub-workflow 'CallGenome'
[2026-06-05T14:00:03.853375Z] [nf-2ef7dd6bba0bddc9c636c1f3fb26bad8-47e1f-5ljpl] [627_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0007] Task initiated on local node
[2026-06-05T14:00:03.914879Z] [nf-2ef7dd6bba0bddc9c636c1f3fb26bad8-47e1f-5ljpl] [627_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0007' launched from sub-workflow 'CallGenome'
[2026-06-05T14:00:03.915814Z] [nf-2ef7dd6bba0bddc9c636c1f3fb26bad8-47e1f-5ljpl] [627_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0019' from sub-workflow 'CallGenome'
[2026-06-05T14:00:03.919221Z] [nf-2ef7dd6bba0bddc9c636c1f3fb26bad8-47e1f-5ljpl] [627_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0019] Task initiated on local node
[2026-06-05T14:00:03.980393Z] [nf-2ef7dd6bba0bddc9c636c1f3fb26bad8-47e1f-5ljpl] [627_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0019' launched from sub-workflow 'CallGenome'
[2026-06-05T14:00:03.981276Z] [nf-2ef7dd6bba0bddc9c636c1f3fb26bad8-47e1f-5ljpl] [627_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0002' from sub-workflow 'CallGenome'
[2026-06-05T14:00:03.985561Z] [nf-2ef7dd6bba0bddc9c636c1f3fb26bad8-47e1f-5ljpl] [627_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0002] Task initiated on local node
[2026-06-05T14:00:04.447867Z] [nf-2ef7dd6bba0bddc9c636c1f3fb26bad8-47e1f-5ljpl] [627_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0005' launched from sub-workflow 'CallGenome'
[2026-06-05T14:00:04.447969Z] [nf-2ef7dd6bba0bddc9c636c1f3fb26bad8-47e1f-5ljpl] [627_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0014' launched from sub-workflow 'CallGenome'
[2026-06-05T14:00:04.448706Z] [nf-2ef7dd6bba0bddc9c636c1f3fb26bad8-47e1f-5ljpl] [627_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0005' from sub-workflow 'CallGenome'
[2026-06-05T14:00:04.449077Z] [nf-2ef7dd6bba0bddc9c636c1f3fb26bad8-47e1f-5ljpl] [627_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0020' from sub-workflow 'CallGenome'
[2026-06-05T14:00:04.453410Z] [nf-2ef7dd6bba0bddc9c636c1f3fb26bad8-47e1f-5ljpl] [627_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0005] Task initiated on local node
[2026-06-05T14:00:04.454256Z] [nf-2ef7dd6bba0bddc9c636c1f3fb26bad8-47e1f-5ljpl] [627_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0020] Task initiated on local node
[2026-06-05T14:00:04.514402Z] [nf-2ef7dd6bba0bddc9c636c1f3fb26bad8-47e1f-5ljpl] [627_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0005' launched from sub-workflow 'CallGenome'
[2026-06-05T14:00:04.515197Z] [nf-2ef7dd6bba0bddc9c636c1f3fb26bad8-47e1f-5ljpl] [627_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0000' from sub-workflow 'CallGenome'
[2026-06-05T14:00:04.518681Z] [nf-2ef7dd6bba0bddc9c636c1f3fb26bad8-47e1f-5ljpl] [627_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0000] Task initiated on local node
[2026-06-05T14:00:04.579997Z] [nf-2ef7dd6bba0bddc9c636c1f3fb26bad8-47e1f-5ljpl] [627_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0000' launched from sub-workflow 'CallGenome'
[2026-06-05T14:00:04.580801Z] [nf-2ef7dd6bba0bddc9c636c1f3fb26bad8-47e1f-5ljpl] [627_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0015' from sub-workflow 'CallGenome'
[2026-06-05T14:00:04.584775Z] [nf-2ef7dd6bba0bddc9c636c1f3fb26bad8-47e1f-5ljpl] [627_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0015] Task initiated on local node
[2026-06-05T14:00:04.589216Z] [nf-2ef7dd6bba0bddc9c636c1f3fb26bad8-47e1f-5ljpl] [627_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0016' launched from sub-workflow 'CallGenome'
[2026-06-05T14:00:04.589834Z] [nf-2ef7dd6bba0bddc9c636c1f3fb26bad8-47e1f-5ljpl] [627_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0016' from sub-workflow 'CallGenome'
[2026-06-05T14:00:04.593104Z] [nf-2ef7dd6bba0bddc9c636c1f3fb26bad8-47e1f-5ljpl] [627_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0016] Task initiated on local node
[2026-06-05T14:00:04.654052Z] [nf-2ef7dd6bba0bddc9c636c1f3fb26bad8-47e1f-5ljpl] [627_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0001' launched from sub-workflow 'CallGenome'
[2026-06-05T14:00:04.654172Z] [nf-2ef7dd6bba0bddc9c636c1f3fb26bad8-47e1f-5ljpl] [627_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0016' launched from sub-workflow 'CallGenome'
[2026-06-05T14:00:04.654867Z] [nf-2ef7dd6bba0bddc9c636c1f3fb26bad8-47e1f-5ljpl] [627_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0004' from sub-workflow 'CallGenome'
[2026-06-05T14:00:04.655224Z] [nf-2ef7dd6bba0bddc9c636c1f3fb26bad8-47e1f-5ljpl] [627_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0001' from sub-workflow 'CallGenome'
[2026-06-05T14:00:04.659136Z] [nf-2ef7dd6bba0bddc9c636c1f3fb26bad8-47e1f-5ljpl] [627_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0004] Task initiated on local node
[2026-06-05T14:00:04.661071Z] [nf-2ef7dd6bba0bddc9c636c1f3fb26bad8-47e1f-5ljpl] [627_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0001] Task initiated on local node
[2026-06-05T14:00:04.688030Z] [nf-2ef7dd6bba0bddc9c636c1f3fb26bad8-47e1f-5ljpl] [627_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0006' launched from sub-workflow 'CallGenome'
[2026-06-05T14:00:04.688778Z] [nf-2ef7dd6bba0bddc9c636c1f3fb26bad8-47e1f-5ljpl] [627_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0001' from sub-workflow 'CallGenome'
[2026-06-05T14:00:04.692517Z] [nf-2ef7dd6bba0bddc9c636c1f3fb26bad8-47e1f-5ljpl] [627_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0001] Task initiated on local node
[2026-06-05T14:00:04.753355Z] [nf-2ef7dd6bba0bddc9c636c1f3fb26bad8-47e1f-5ljpl] [627_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0001' launched from sub-workflow 'CallGenome'
[2026-06-05T14:00:04.754109Z] [nf-2ef7dd6bba0bddc9c636c1f3fb26bad8-47e1f-5ljpl] [627_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0014' from sub-workflow 'CallGenome'
[2026-06-05T14:00:04.757963Z] [nf-2ef7dd6bba0bddc9c636c1f3fb26bad8-47e1f-5ljpl] [627_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0014] Task initiated on local node
[2026-06-05T14:00:04.819052Z] [nf-2ef7dd6bba0bddc9c636c1f3fb26bad8-47e1f-5ljpl] [627_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0014' launched from sub-workflow 'CallGenome'
[2026-06-05T14:00:04.819806Z] [nf-2ef7dd6bba0bddc9c636c1f3fb26bad8-47e1f-5ljpl] [627_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0012' from sub-workflow 'CallGenome'
[2026-06-05T14:00:04.823827Z] [nf-2ef7dd6bba0bddc9c636c1f3fb26bad8-47e1f-5ljpl] [627_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0012] Task initiated on local node
[2026-06-05T14:00:05.586674Z] [nf-2ef7dd6bba0bddc9c636c1f3fb26bad8-47e1f-5ljpl] [627_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0009' launched from sub-workflow 'CallGenome'
[2026-06-05T14:00:05.587452Z] [nf-2ef7dd6bba0bddc9c636c1f3fb26bad8-47e1f-5ljpl] [627_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0009' from sub-workflow 'CallGenome'
[2026-06-05T14:00:05.590978Z] [nf-2ef7dd6bba0bddc9c636c1f3fb26bad8-47e1f-5ljpl] [627_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0009] Task initiated on local node
[2026-06-05T14:00:05.652038Z] [nf-2ef7dd6bba0bddc9c636c1f3fb26bad8-47e1f-5ljpl] [627_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0009' launched from sub-workflow 'CallGenome'
[2026-06-05T14:00:05.652799Z] [nf-2ef7dd6bba0bddc9c636c1f3fb26bad8-47e1f-5ljpl] [627_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0018' from sub-workflow 'CallGenome'
[2026-06-05T14:00:05.656968Z] [nf-2ef7dd6bba0bddc9c636c1f3fb26bad8-47e1f-5ljpl] [627_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0018] Task initiated on local node
[2026-06-05T14:00:05.717531Z] [nf-2ef7dd6bba0bddc9c636c1f3fb26bad8-47e1f-5ljpl] [627_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0018' launched from sub-workflow 'CallGenome'
[2026-06-05T14:00:05.718294Z] [nf-2ef7dd6bba0bddc9c636c1f3fb26bad8-47e1f-5ljpl] [627_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0003' from sub-workflow 'CallGenome'
[2026-06-05T14:00:05.721778Z] [nf-2ef7dd6bba0bddc9c636c1f3fb26bad8-47e1f-5ljpl] [627_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0003] Task initiated on local node
[2026-06-05T14:00:05.782914Z] [nf-2ef7dd6bba0bddc9c636c1f3fb26bad8-47e1f-5ljpl] [627_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0003' launched from sub-workflow 'CallGenome'
[2026-06-05T14:00:05.783583Z] [nf-2ef7dd6bba0bddc9c636c1f3fb26bad8-47e1f-5ljpl] [627_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0011' from sub-workflow 'CallGenome'
[2026-06-05T14:00:05.787556Z] [nf-2ef7dd6bba0bddc9c636c1f3fb26bad8-47e1f-5ljpl] [627_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0011] Task initiated on local node
[2026-06-05T14:00:05.898749Z] [nf-2ef7dd6bba0bddc9c636c1f3fb26bad8-47e1f-5ljpl] [627_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0011' launched from sub-workflow 'CallGenome'
[2026-06-05T14:00:05.899512Z] [nf-2ef7dd6bba0bddc9c636c1f3fb26bad8-47e1f-5ljpl] [627_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0011' from sub-workflow 'CallGenome'
[2026-06-05T14:00:05.903267Z] [nf-2ef7dd6bba0bddc9c636c1f3fb26bad8-47e1f-5ljpl] [627_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0011] Task initiated on local node
[2026-06-05T14:00:05.932177Z] [nf-2ef7dd6bba0bddc9c636c1f3fb26bad8-47e1f-5ljpl] [627_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0002' launched from sub-workflow 'CallGenome'
[2026-06-05T14:00:05.932917Z] [nf-2ef7dd6bba0bddc9c636c1f3fb26bad8-47e1f-5ljpl] [627_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0010' from sub-workflow 'CallGenome'
[2026-06-05T14:00:05.936764Z] [nf-2ef7dd6bba0bddc9c636c1f3fb26bad8-47e1f-5ljpl] [627_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0010] Task initiated on local node
[2026-06-05T14:00:05.936996Z] [nf-2ef7dd6bba0bddc9c636c1f3fb26bad8-47e1f-5ljpl] [627_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0011' launched from sub-workflow 'CallGenome'
[2026-06-05T14:00:05.937519Z] [nf-2ef7dd6bba0bddc9c636c1f3fb26bad8-47e1f-5ljpl] [627_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0008' from sub-workflow 'CallGenome'
[2026-06-05T14:00:05.940994Z] [nf-2ef7dd6bba0bddc9c636c1f3fb26bad8-47e1f-5ljpl] [627_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0008] Task initiated on local node
[2026-06-05T14:00:06.352950Z] [nf-2ef7dd6bba0bddc9c636c1f3fb26bad8-47e1f-5ljpl] [627_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0004' launched from sub-workflow 'CallGenome'
[2026-06-05T14:00:06.353627Z] [nf-2ef7dd6bba0bddc9c636c1f3fb26bad8-47e1f-5ljpl] [627_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0007' from sub-workflow 'CallGenome'
[2026-06-05T14:00:06.357464Z] [nf-2ef7dd6bba0bddc9c636c1f3fb26bad8-47e1f-5ljpl] [627_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0007] Task initiated on local node
[2026-06-05T14:00:06.518880Z] [nf-2ef7dd6bba0bddc9c636c1f3fb26bad8-47e1f-5ljpl] [627_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0010' launched from sub-workflow 'CallGenome'
[2026-06-05T14:00:06.519629Z] [nf-2ef7dd6bba0bddc9c636c1f3fb26bad8-47e1f-5ljpl] [627_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0010' from sub-workflow 'CallGenome'
[2026-06-05T14:00:06.523472Z] [nf-2ef7dd6bba0bddc9c636c1f3fb26bad8-47e1f-5ljpl] [627_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0010] Task initiated on local node
[2026-06-05T14:00:06.584714Z] [nf-2ef7dd6bba0bddc9c636c1f3fb26bad8-47e1f-5ljpl] [627_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0010' launched from sub-workflow 'CallGenome'
[2026-06-05T14:00:06.585344Z] [nf-2ef7dd6bba0bddc9c636c1f3fb26bad8-47e1f-5ljpl] [627_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0002' from sub-workflow 'CallGenome'
[2026-06-05T14:00:06.589364Z] [nf-2ef7dd6bba0bddc9c636c1f3fb26bad8-47e1f-5ljpl] [627_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0002] Task initiated on local node
[2026-06-05T14:00:06.590044Z] [nf-2ef7dd6bba0bddc9c636c1f3fb26bad8-47e1f-5ljpl] [627_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0017' launched from sub-workflow 'CallGenome'
[2026-06-05T14:00:06.590593Z] [nf-2ef7dd6bba0bddc9c636c1f3fb26bad8-47e1f-5ljpl] [627_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0017' from sub-workflow 'CallGenome'
[2026-06-05T14:00:06.593727Z] [nf-2ef7dd6bba0bddc9c636c1f3fb26bad8-47e1f-5ljpl] [627_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0017] Task initiated on local node
[2026-06-05T14:00:06.654884Z] [nf-2ef7dd6bba0bddc9c636c1f3fb26bad8-47e1f-5ljpl] [627_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0017' launched from sub-workflow 'CallGenome'
[2026-06-05T14:00:06.655005Z] [nf-2ef7dd6bba0bddc9c636c1f3fb26bad8-47e1f-5ljpl] [627_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0002' launched from sub-workflow 'CallGenome'
[2026-06-05T14:00:06.655663Z] [nf-2ef7dd6bba0bddc9c636c1f3fb26bad8-47e1f-5ljpl] [627_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0006' from sub-workflow 'CallGenome'
[2026-06-05T14:00:06.656042Z] [nf-2ef7dd6bba0bddc9c636c1f3fb26bad8-47e1f-5ljpl] [627_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0004' from sub-workflow 'CallGenome'
[2026-06-05T14:00:06.659957Z] [nf-2ef7dd6bba0bddc9c636c1f3fb26bad8-47e1f-5ljpl] [627_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0006] Task initiated on local node
[2026-06-05T14:00:06.692786Z] [nf-2ef7dd6bba0bddc9c636c1f3fb26bad8-47e1f-5ljpl] [627_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0004] Task initiated on local node
[2026-06-05T14:00:06.721282Z] [nf-2ef7dd6bba0bddc9c636c1f3fb26bad8-47e1f-5ljpl] [627_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0006' launched from sub-workflow 'CallGenome'
[2026-06-05T14:00:06.721436Z] [nf-2ef7dd6bba0bddc9c636c1f3fb26bad8-47e1f-5ljpl] [627_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0004' launched from sub-workflow 'CallGenome'
[2026-06-05T14:00:06.722071Z] [nf-2ef7dd6bba0bddc9c636c1f3fb26bad8-47e1f-5ljpl] [627_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0006' from sub-workflow 'CallGenome'
[2026-06-05T14:00:06.722515Z] [nf-2ef7dd6bba0bddc9c636c1f3fb26bad8-47e1f-5ljpl] [627_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0009' from sub-workflow 'CallGenome'
[2026-06-05T14:00:06.728591Z] [nf-2ef7dd6bba0bddc9c636c1f3fb26bad8-47e1f-5ljpl] [627_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0006] Task initiated on local node
[2026-06-05T14:00:06.728804Z] [nf-2ef7dd6bba0bddc9c636c1f3fb26bad8-47e1f-5ljpl] [627_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0020' launched from sub-workflow 'CallGenome'
[2026-06-05T14:00:06.729430Z] [nf-2ef7dd6bba0bddc9c636c1f3fb26bad8-47e1f-5ljpl] [627_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0009] Task initiated on local node
[2026-06-05T14:00:06.729819Z] [nf-2ef7dd6bba0bddc9c636c1f3fb26bad8-47e1f-5ljpl] [627_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0013' from sub-workflow 'CallGenome'
[2026-06-05T14:00:06.733491Z] [nf-2ef7dd6bba0bddc9c636c1f3fb26bad8-47e1f-5ljpl] [627_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0013] Task initiated on local node
[2026-06-05T14:00:06.794407Z] [nf-2ef7dd6bba0bddc9c636c1f3fb26bad8-47e1f-5ljpl] [627_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0009' launched from sub-workflow 'CallGenome'
[2026-06-05T14:00:06.795125Z] [nf-2ef7dd6bba0bddc9c636c1f3fb26bad8-47e1f-5ljpl] [627_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0002' from sub-workflow 'CallGenome'
[2026-06-05T14:00:06.798736Z] [nf-2ef7dd6bba0bddc9c636c1f3fb26bad8-47e1f-5ljpl] [627_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0002] Task initiated on local node
[2026-06-05T14:00:07.110646Z] [nf-2ef7dd6bba0bddc9c636c1f3fb26bad8-47e1f-5ljpl] [627_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0001' launched from sub-workflow 'CallGenome'
[2026-06-05T14:00:07.111357Z] [nf-2ef7dd6bba0bddc9c636c1f3fb26bad8-47e1f-5ljpl] [627_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0001' from sub-workflow 'CallGenome'
[2026-06-05T14:00:07.115427Z] [nf-2ef7dd6bba0bddc9c636c1f3fb26bad8-47e1f-5ljpl] [627_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0001] Task initiated on local node
[2026-06-05T14:00:07.128263Z] [nf-2ef7dd6bba0bddc9c636c1f3fb26bad8-47e1f-5ljpl] [627_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0012' launched from sub-workflow 'CallGenome'
[2026-06-05T14:00:07.128910Z] [nf-2ef7dd6bba0bddc9c636c1f3fb26bad8-47e1f-5ljpl] [627_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0012' from sub-workflow 'CallGenome'
[2026-06-05T14:00:07.132403Z] [nf-2ef7dd6bba0bddc9c636c1f3fb26bad8-47e1f-5ljpl] [627_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0012] Task initiated on local node
[2026-06-05T14:00:07.145166Z] [nf-2ef7dd6bba0bddc9c636c1f3fb26bad8-47e1f-5ljpl] [627_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0008' launched from sub-workflow 'CallGenome'
[2026-06-05T14:00:07.145789Z] [nf-2ef7dd6bba0bddc9c636c1f3fb26bad8-47e1f-5ljpl] [627_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0008' from sub-workflow 'CallGenome'
[2026-06-05T14:00:07.148024Z] [nf-2ef7dd6bba0bddc9c636c1f3fb26bad8-47e1f-5ljpl] [627_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0001' launched from sub-workflow 'CallGenome'
[2026-06-05T14:00:07.148711Z] [nf-2ef7dd6bba0bddc9c636c1f3fb26bad8-47e1f-5ljpl] [627_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0009' from sub-workflow 'CallGenome'
[2026-06-05T14:00:07.149154Z] [nf-2ef7dd6bba0bddc9c636c1f3fb26bad8-47e1f-5ljpl] [627_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0008] Task initiated on local node
[2026-06-05T14:00:07.151743Z] [nf-2ef7dd6bba0bddc9c636c1f3fb26bad8-47e1f-5ljpl] [627_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0009] Task initiated on local node
[2026-06-05T14:00:07.164795Z] [nf-2ef7dd6bba0bddc9c636c1f3fb26bad8-47e1f-5ljpl] [627_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0012' launched from sub-workflow 'CallGenome'
[2026-06-05T14:00:07.165327Z] [nf-2ef7dd6bba0bddc9c636c1f3fb26bad8-47e1f-5ljpl] [627_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0020' from sub-workflow 'CallGenome'
[2026-06-05T14:00:07.168552Z] [nf-2ef7dd6bba0bddc9c636c1f3fb26bad8-47e1f-5ljpl] [627_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0020] Task initiated on local node
[2026-06-05T14:00:07.181409Z] [nf-2ef7dd6bba0bddc9c636c1f3fb26bad8-47e1f-5ljpl] [627_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0008' launched from sub-workflow 'CallGenome'
[2026-06-05T14:00:07.181974Z] [nf-2ef7dd6bba0bddc9c636c1f3fb26bad8-47e1f-5ljpl] [627_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0004' from sub-workflow 'CallGenome'
[2026-06-05T14:00:07.185379Z] [nf-2ef7dd6bba0bddc9c636c1f3fb26bad8-47e1f-5ljpl] [627_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0004] Task initiated on local node
[2026-06-05T14:00:07.190132Z] [nf-2ef7dd6bba0bddc9c636c1f3fb26bad8-47e1f-5ljpl] [627_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0009' launched from sub-workflow 'CallGenome'
[2026-06-05T14:00:07.190616Z] [nf-2ef7dd6bba0bddc9c636c1f3fb26bad8-47e1f-5ljpl] [627_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0007' from sub-workflow 'CallGenome'
[2026-06-05T14:00:07.193547Z] [nf-2ef7dd6bba0bddc9c636c1f3fb26bad8-47e1f-5ljpl] [627_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0007] Task initiated on local node
[2026-06-05T14:00:07.206764Z] [nf-2ef7dd6bba0bddc9c636c1f3fb26bad8-47e1f-5ljpl] [627_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0020' launched from sub-workflow 'CallGenome'
[2026-06-05T14:00:07.239053Z] [nf-2ef7dd6bba0bddc9c636c1f3fb26bad8-47e1f-5ljpl] [627_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0007' launched from sub-workflow 'CallGenome'
[2026-06-05T14:00:07.554137Z] [nf-2ef7dd6bba0bddc9c636c1f3fb26bad8-47e1f-5ljpl] [627_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0015' launched from sub-workflow 'CallGenome'
[2026-06-05T14:00:07.554630Z] [nf-2ef7dd6bba0bddc9c636c1f3fb26bad8-47e1f-5ljpl] [627_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0015' from sub-workflow 'CallGenome'
[2026-06-05T14:00:07.558358Z] [nf-2ef7dd6bba0bddc9c636c1f3fb26bad8-47e1f-5ljpl] [627_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0015] Task initiated on local node
[2026-06-05T14:00:07.619216Z] [nf-2ef7dd6bba0bddc9c636c1f3fb26bad8-47e1f-5ljpl] [627_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0015' launched from sub-workflow 'CallGenome'
[2026-06-05T14:00:07.934586Z] [nf-2ef7dd6bba0bddc9c636c1f3fb26bad8-47e1f-5ljpl] [627_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0006' launched from sub-workflow 'CallGenome'
[2026-06-05T14:00:07.935148Z] [nf-2ef7dd6bba0bddc9c636c1f3fb26bad8-47e1f-5ljpl] [627_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0006' from sub-workflow 'CallGenome'
[2026-06-05T14:00:07.938545Z] [nf-2ef7dd6bba0bddc9c636c1f3fb26bad8-47e1f-5ljpl] [627_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0006] Task initiated on local node
[2026-06-05T14:00:07.999883Z] [nf-2ef7dd6bba0bddc9c636c1f3fb26bad8-47e1f-5ljpl] [627_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0006' launched from sub-workflow 'CallGenome'
[2026-06-05T14:00:08.867063Z] [nf-2ef7dd6bba0bddc9c636c1f3fb26bad8-47e1f-5ljpl] [627_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0007' launched from sub-workflow 'CallGenome'
[2026-06-05T14:00:08.867644Z] [nf-2ef7dd6bba0bddc9c636c1f3fb26bad8-47e1f-5ljpl] [627_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0007' from sub-workflow 'CallGenome'
[2026-06-05T14:00:08.870844Z] [nf-2ef7dd6bba0bddc9c636c1f3fb26bad8-47e1f-5ljpl] [627_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0007] Task initiated on local node
[2026-06-05T14:00:08.932072Z] [nf-2ef7dd6bba0bddc9c636c1f3fb26bad8-47e1f-5ljpl] [627_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0007' launched from sub-workflow 'CallGenome'
[2026-06-05T14:00:09.247307Z] [nf-2ef7dd6bba0bddc9c636c1f3fb26bad8-47e1f-5ljpl] [627_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0004' launched from sub-workflow 'CallGenome'
[2026-06-05T14:00:09.247857Z] [nf-2ef7dd6bba0bddc9c636c1f3fb26bad8-47e1f-5ljpl] [627_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0004' from sub-workflow 'CallGenome'
[2026-06-05T14:00:09.251192Z] [nf-2ef7dd6bba0bddc9c636c1f3fb26bad8-47e1f-5ljpl] [627_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0004] Task initiated on local node
[2026-06-05T14:00:09.312531Z] [nf-2ef7dd6bba0bddc9c636c1f3fb26bad8-47e1f-5ljpl] [627_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0004' launched from sub-workflow 'CallGenome'
[2026-06-05T14:00:09.577661Z] [nf-2ef7dd6bba0bddc9c636c1f3fb26bad8-47e1f-5ljpl] [627_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0013' launched from sub-workflow 'CallGenome'
[2026-06-05T14:00:09.578208Z] [nf-2ef7dd6bba0bddc9c636c1f3fb26bad8-47e1f-5ljpl] [627_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0013' from sub-workflow 'CallGenome'
[2026-06-05T14:00:09.581712Z] [nf-2ef7dd6bba0bddc9c636c1f3fb26bad8-47e1f-5ljpl] [627_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0013] Task initiated on local node
[2026-06-05T14:00:09.643088Z] [nf-2ef7dd6bba0bddc9c636c1f3fb26bad8-47e1f-5ljpl] [627_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0013' launched from sub-workflow 'CallGenome'
[2026-06-05T14:00:09.857854Z] [nf-2ef7dd6bba0bddc9c636c1f3fb26bad8-47e1f-5ljpl] [627_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0002' launched from sub-workflow 'CallGenome'
[2026-06-05T14:00:09.858386Z] [nf-2ef7dd6bba0bddc9c636c1f3fb26bad8-47e1f-5ljpl] [627_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0002' from sub-workflow 'CallGenome'
[2026-06-05T14:00:09.861955Z] [nf-2ef7dd6bba0bddc9c636c1f3fb26bad8-47e1f-5ljpl] [627_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0002] Task initiated on local node
[2026-06-05T14:00:09.923058Z] [nf-2ef7dd6bba0bddc9c636c1f3fb26bad8-47e1f-5ljpl] [627_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0002' launched from sub-workflow 'CallGenome'
[2026-06-05T14:00:09.923392Z] [nf-2ef7dd6bba0bddc9c636c1f3fb26bad8-47e1f-5ljpl] [627_1] [TaskManager] Completed command task: 'CallGenome+completedAllGenomeSegments' launched from sub-workflow 'CallGenome'
[2026-06-05T14:00:09.923594Z] [nf-2ef7dd6bba0bddc9c636c1f3fb26bad8-47e1f-5ljpl] [627_1] [TaskManager] Launching command task: 'CallGenome+Indel_concat_vcf' from sub-workflow 'CallGenome'
[2026-06-05T14:00:09.924022Z] [nf-2ef7dd6bba0bddc9c636c1f3fb26bad8-47e1f-5ljpl] [627_1] [TaskManager] Launching command task: 'CallGenome+SNV_concat_vcf' from sub-workflow 'CallGenome'
[2026-06-05T14:00:09.924396Z] [nf-2ef7dd6bba0bddc9c636c1f3fb26bad8-47e1f-5ljpl] [627_1] [TaskManager] Launching command task: 'CallGenome+mergeRunStats' from sub-workflow 'CallGenome'
[2026-06-05T14:00:09.929186Z] [nf-2ef7dd6bba0bddc9c636c1f3fb26bad8-47e1f-5ljpl] [627_1] [TaskRunner:CallGenome+Indel_concat_vcf] Task initiated on local node
[2026-06-05T14:00:09.931881Z] [nf-2ef7dd6bba0bddc9c636c1f3fb26bad8-47e1f-5ljpl] [627_1] [TaskRunner:CallGenome+mergeRunStats] Task initiated on local node
[2026-06-05T14:00:09.959439Z] [nf-2ef7dd6bba0bddc9c636c1f3fb26bad8-47e1f-5ljpl] [627_1] [TaskRunner:CallGenome+SNV_concat_vcf] Task initiated on local node
[2026-06-05T14:00:09.989355Z] [nf-2ef7dd6bba0bddc9c636c1f3fb26bad8-47e1f-5ljpl] [627_1] [TaskManager] Completed command task: 'CallGenome+SNV_concat_vcf' launched from sub-workflow 'CallGenome'
[2026-06-05T14:00:09.989448Z] [nf-2ef7dd6bba0bddc9c636c1f3fb26bad8-47e1f-5ljpl] [627_1] [TaskManager] Completed command task: 'CallGenome+Indel_concat_vcf' launched from sub-workflow 'CallGenome'
[2026-06-05T14:00:09.989476Z] [nf-2ef7dd6bba0bddc9c636c1f3fb26bad8-47e1f-5ljpl] [627_1] [TaskManager] Completed command task: 'CallGenome+mergeRunStats' launched from sub-workflow 'CallGenome'
[2026-06-05T14:00:09.989755Z] [nf-2ef7dd6bba0bddc9c636c1f3fb26bad8-47e1f-5ljpl] [627_1] [TaskManager] Launching command task: 'CallGenome+Indel_index_vcf' from sub-workflow 'CallGenome'
[2026-06-05T14:00:09.990129Z] [nf-2ef7dd6bba0bddc9c636c1f3fb26bad8-47e1f-5ljpl] [627_1] [TaskManager] Launching command task: 'CallGenome+SNV_index_vcf' from sub-workflow 'CallGenome'
[2026-06-05T14:00:09.993508Z] [nf-2ef7dd6bba0bddc9c636c1f3fb26bad8-47e1f-5ljpl] [627_1] [TaskRunner:CallGenome+SNV_index_vcf] Task initiated on local node
[2026-06-05T14:00:09.994320Z] [nf-2ef7dd6bba0bddc9c636c1f3fb26bad8-47e1f-5ljpl] [627_1] [TaskRunner:CallGenome+Indel_index_vcf] Task initiated on local node
[2026-06-05T14:00:10.022744Z] [nf-2ef7dd6bba0bddc9c636c1f3fb26bad8-47e1f-5ljpl] [627_1] [TaskManager] Completed command task: 'CallGenome+Indel_index_vcf' launched from sub-workflow 'CallGenome'
[2026-06-05T14:00:10.024147Z] [nf-2ef7dd6bba0bddc9c636c1f3fb26bad8-47e1f-5ljpl] [627_1] [TaskManager] Completed command task: 'CallGenome+SNV_index_vcf' launched from sub-workflow 'CallGenome'
[2026-06-05T14:00:10.024366Z] [nf-2ef7dd6bba0bddc9c636c1f3fb26bad8-47e1f-5ljpl] [627_1] [TaskManager] Launching command task: 'CallGenome+removeTmpDir' from sub-workflow 'CallGenome'
[2026-06-05T14:00:10.028154Z] [nf-2ef7dd6bba0bddc9c636c1f3fb26bad8-47e1f-5ljpl] [627_1] [TaskRunner:CallGenome+removeTmpDir] Task initiated on local node
[2026-06-05T14:00:10.056687Z] [nf-2ef7dd6bba0bddc9c636c1f3fb26bad8-47e1f-5ljpl] [627_1] [TaskManager] Completed command task: 'CallGenome+removeTmpDir' launched from sub-workflow 'CallGenome'
[2026-06-05T14:00:11.274174Z] [nf-2ef7dd6bba0bddc9c636c1f3fb26bad8-47e1f-5ljpl] [627_1] [TaskManager] Completed sub-workflow task: 'CallGenome' launched from master workflow
[2026-06-05T14:00:19.516479Z] [nf-2ef7dd6bba0bddc9c636c1f3fb26bad8-47e1f-5ljpl] [627_1] [WorkflowRunner] Strelka somatic workflow successfully completed.
[2026-06-05T14:00:19.516479Z] [nf-2ef7dd6bba0bddc9c636c1f3fb26bad8-47e1f-5ljpl] [627_1] [WorkflowRunner] 
[2026-06-05T14:00:19.516479Z] [nf-2ef7dd6bba0bddc9c636c1f3fb26bad8-47e1f-5ljpl] [627_1] [WorkflowRunner] 	workflow version: 2.9.10
[2026-06-05T14:00:19.516544Z] [nf-2ef7dd6bba0bddc9c636c1f3fb26bad8-47e1f-5ljpl] [627_1] [WorkflowRunner] 
[2026-06-05T14:00:19.516552Z] [nf-2ef7dd6bba0bddc9c636c1f3fb26bad8-47e1f-5ljpl] [627_1] [WorkflowRunner] Workflow successfully completed all tasks
[2026-06-05T14:00:19.516559Z] [nf-2ef7dd6bba0bddc9c636c1f3fb26bad8-47e1f-5ljpl] [627_1] [WorkflowRunner] Elapsed time for full workflow: 18 sec