Downloading: s3://natera-platform-sandbox/pipeline-resources/ngi-igenomes/igenomes/Homo_sapiens/GATK/GRCh38/Sequence/WholeGenomeFasta/Homo_sapiens_assembly38.fasta
  Downloading: s3://natera-platform-sandbox/pipeline-resources/ngi-igenomes/control_truth/hd789/hd789_coa.vcf.gz
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/b2/0a1e4eba9ab8b939c38c8ae1910a68/.command.sh
  Downloading: s3://natera-platform-sandbox/pipeline-resources/ngi-igenomes/igenomes/Homo_sapiens/GATK/GRCh38/Sequence/WholeGenomeFasta/Homo_sapiens_assembly38.fasta.fai
  Downloading: s3://natera-platform-sandbox/pipeline-resources/ngi-igenomes/control_truth/hd789/hd789_coa.vcf.gz.tbi
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/15/ff0283664f0f21e3df9dc656f8fb86/positive_somatic_control_2.snv_indel.phased.vep.final.vcf.gz
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/b2/0a1e4eba9ab8b939c38c8ae1910a68/.command.run
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/15/ff0283664f0f21e3df9dc656f8fb86/positive_somatic_control_2.snv_indel.phased.vep.final.vcf.gz.tbi
==> STAGING COMPLETE (8 inputs)

Lines   total/split/joined/realigned/skipped:	5/0/0/0/0
Lines   total/split/joined/realigned/skipped:	0/0/0/0/0