.command.err - Workdir - DAQ:CONTROL_VARIANT_CALLING:CONTROL_SOMATIC_VC:BAM_VARIANT_CALLING_SOMATIC_STRELKA:STRELKA_SOMATIC (positive_somatic_control_2;chr4_22420786-22421189.bed)

File Info

Filename: .command.err
Full Path: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/55/4f8600c22dc2a63b1353d2cc491287/.command.err
Size: 85.8 KB
Task: DAQ:CONTROL_VARIANT_CALLING:CONTROL_SOMATIC_VC:BAM_VARIANT_CALLING_SOMATIC_STRELKA:STRELKA_SOMATIC (positive_somatic_control_2;chr4_22420786-22421189.bed)
Attempt
Content

[2026-06-05T14:00:08.459272Z] [nf-554f8600c22dc2a63b1353d2cc491287-6fc3f-mvvdr] [613_1] [WorkflowRunner] Initiating pyFlow run
[2026-06-05T14:00:08.460454Z] [nf-554f8600c22dc2a63b1353d2cc491287-6fc3f-mvvdr] [613_1] [WorkflowRunner] pyFlowClientWorkflowClass: StrelkaSomaticWorkflow
[2026-06-05T14:00:08.460465Z] [nf-554f8600c22dc2a63b1353d2cc491287-6fc3f-mvvdr] [613_1] [WorkflowRunner] pyFlowVersion: 1.1.20
[2026-06-05T14:00:08.460470Z] [nf-554f8600c22dc2a63b1353d2cc491287-6fc3f-mvvdr] [613_1] [WorkflowRunner] pythonVersion: 2.7.15.final.0
[2026-06-05T14:00:08.460475Z] [nf-554f8600c22dc2a63b1353d2cc491287-6fc3f-mvvdr] [613_1] [WorkflowRunner] WorkingDir: '/tmp/nxf.XXXXzbdnpB'
[2026-06-05T14:00:08.460479Z] [nf-554f8600c22dc2a63b1353d2cc491287-6fc3f-mvvdr] [613_1] [WorkflowRunner] ProcessCmdLine: '/var/tmp/strelka/runWorkflow.py -m local -j 8'
[2026-06-05T14:00:08.460484Z] [nf-554f8600c22dc2a63b1353d2cc491287-6fc3f-mvvdr] [613_1] [WorkflowRunner] [RunParameters] mode: local
[2026-06-05T14:00:08.460488Z] [nf-554f8600c22dc2a63b1353d2cc491287-6fc3f-mvvdr] [613_1] [WorkflowRunner] [RunParameters] nCores: 8
[2026-06-05T14:00:08.460492Z] [nf-554f8600c22dc2a63b1353d2cc491287-6fc3f-mvvdr] [613_1] [WorkflowRunner] [RunParameters] memMb: 3047507
[2026-06-05T14:00:08.460497Z] [nf-554f8600c22dc2a63b1353d2cc491287-6fc3f-mvvdr] [613_1] [WorkflowRunner] [RunParameters] dataDir: /var/tmp/strelka/workspace/pyflow.data
[2026-06-05T14:00:08.460501Z] [nf-554f8600c22dc2a63b1353d2cc491287-6fc3f-mvvdr] [613_1] [WorkflowRunner] [RunParameters] isDryRun: False
[2026-06-05T14:00:08.460504Z] [nf-554f8600c22dc2a63b1353d2cc491287-6fc3f-mvvdr] [613_1] [WorkflowRunner] [RunParameters] isContinue: False
[2026-06-05T14:00:08.460508Z] [nf-554f8600c22dc2a63b1353d2cc491287-6fc3f-mvvdr] [613_1] [WorkflowRunner] [RunParameters] isForceContinue: True
[2026-06-05T14:00:08.460513Z] [nf-554f8600c22dc2a63b1353d2cc491287-6fc3f-mvvdr] [613_1] [WorkflowRunner] [RunParameters] mailTo: ''
[2026-06-05T14:00:08.461023Z] [nf-554f8600c22dc2a63b1353d2cc491287-6fc3f-mvvdr] [613_1] [TaskRunner:masterWorkflow] Starting task specification for master workflow
[2026-06-05T14:00:08.461163Z] [nf-554f8600c22dc2a63b1353d2cc491287-6fc3f-mvvdr] [613_1] [StrelkaSomaticWorkflow] Initiating Strelka somatic workflow version: 2.9.10
[2026-06-05T14:00:08.467259Z] [nf-554f8600c22dc2a63b1353d2cc491287-6fc3f-mvvdr] [613_1] [WorkflowRunner] Adding sub-workflow task 'CallGenome' to master workflow
[2026-06-05T14:00:08.468049Z] [nf-554f8600c22dc2a63b1353d2cc491287-6fc3f-mvvdr] [613_1] [TaskManager] Launching sub-workflow task: 'CallGenome' from master workflow
[2026-06-05T14:00:08.468325Z] [nf-554f8600c22dc2a63b1353d2cc491287-6fc3f-mvvdr] [613_1] [TaskRunner:masterWorkflow] Finished task specification for master workflow
[2026-06-05T14:00:08.468541Z] [nf-554f8600c22dc2a63b1353d2cc491287-6fc3f-mvvdr] [613_1] [TaskRunner:CallGenome] Starting task specification for sub-workflow
[2026-06-05T14:00:08.468795Z] [nf-554f8600c22dc2a63b1353d2cc491287-6fc3f-mvvdr] [613_1] [WorkflowRunner] Adding command task 'CallGenome+makeTmpDir' to sub-workflow 'CallGenome'
[2026-06-05T14:00:08.469329Z] [nf-554f8600c22dc2a63b1353d2cc491287-6fc3f-mvvdr] [613_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_003_chr4_0000' to sub-workflow 'CallGenome'
[2026-06-05T14:00:08.469423Z] [nf-554f8600c22dc2a63b1353d2cc491287-6fc3f-mvvdr] [613_1] [WorkflowRunner] Adding command task 'CallGenome+fixVcfHeader_chromId_003_chr4_0000' to sub-workflow 'CallGenome'
[2026-06-05T14:00:08.469499Z] [nf-554f8600c22dc2a63b1353d2cc491287-6fc3f-mvvdr] [613_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_003_chr4_0000' to sub-workflow 'CallGenome'
[2026-06-05T14:00:08.469623Z] [nf-554f8600c22dc2a63b1353d2cc491287-6fc3f-mvvdr] [613_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_003_chr4_0001' to sub-workflow 'CallGenome'
[2026-06-05T14:00:08.469690Z] [nf-554f8600c22dc2a63b1353d2cc491287-6fc3f-mvvdr] [613_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_003_chr4_0001' to sub-workflow 'CallGenome'
[2026-06-05T14:00:08.469808Z] [nf-554f8600c22dc2a63b1353d2cc491287-6fc3f-mvvdr] [613_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_003_chr4_0002' to sub-workflow 'CallGenome'
[2026-06-05T14:00:08.469871Z] [nf-554f8600c22dc2a63b1353d2cc491287-6fc3f-mvvdr] [613_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_003_chr4_0002' to sub-workflow 'CallGenome'
[2026-06-05T14:00:08.469986Z] [nf-554f8600c22dc2a63b1353d2cc491287-6fc3f-mvvdr] [613_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_003_chr4_0003' to sub-workflow 'CallGenome'
[2026-06-05T14:00:08.470112Z] [nf-554f8600c22dc2a63b1353d2cc491287-6fc3f-mvvdr] [613_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_003_chr4_0003' to sub-workflow 'CallGenome'
[2026-06-05T14:00:08.470565Z] [nf-554f8600c22dc2a63b1353d2cc491287-6fc3f-mvvdr] [613_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_003_chr4_0004' to sub-workflow 'CallGenome'
[2026-06-05T14:00:08.470848Z] [nf-554f8600c22dc2a63b1353d2cc491287-6fc3f-mvvdr] [613_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_003_chr4_0004' to sub-workflow 'CallGenome'
[2026-06-05T14:00:08.471005Z] [nf-554f8600c22dc2a63b1353d2cc491287-6fc3f-mvvdr] [613_1] [TaskManager] Launching command task: 'CallGenome+makeTmpDir' from sub-workflow 'CallGenome'
[2026-06-05T14:00:08.471609Z] [nf-554f8600c22dc2a63b1353d2cc491287-6fc3f-mvvdr] [613_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_003_chr4_0005' to sub-workflow 'CallGenome'
[2026-06-05T14:00:08.472265Z] [nf-554f8600c22dc2a63b1353d2cc491287-6fc3f-mvvdr] [613_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_003_chr4_0005' to sub-workflow 'CallGenome'
[2026-06-05T14:00:08.472505Z] [nf-554f8600c22dc2a63b1353d2cc491287-6fc3f-mvvdr] [613_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_003_chr4_0006' to sub-workflow 'CallGenome'
[2026-06-05T14:00:08.472654Z] [nf-554f8600c22dc2a63b1353d2cc491287-6fc3f-mvvdr] [613_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_003_chr4_0006' to sub-workflow 'CallGenome'
[2026-06-05T14:00:08.474915Z] [nf-554f8600c22dc2a63b1353d2cc491287-6fc3f-mvvdr] [613_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_003_chr4_0007' to sub-workflow 'CallGenome'
[2026-06-05T14:00:08.475446Z] [nf-554f8600c22dc2a63b1353d2cc491287-6fc3f-mvvdr] [613_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_003_chr4_0007' to sub-workflow 'CallGenome'
[2026-06-05T14:00:08.475783Z] [nf-554f8600c22dc2a63b1353d2cc491287-6fc3f-mvvdr] [613_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_003_chr4_0008' to sub-workflow 'CallGenome'
[2026-06-05T14:00:08.475855Z] [nf-554f8600c22dc2a63b1353d2cc491287-6fc3f-mvvdr] [613_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_003_chr4_0008' to sub-workflow 'CallGenome'
[2026-06-05T14:00:08.476143Z] [nf-554f8600c22dc2a63b1353d2cc491287-6fc3f-mvvdr] [613_1] [TaskRunner:CallGenome+makeTmpDir] Task initiated on local node
[2026-06-05T14:00:08.476401Z] [nf-554f8600c22dc2a63b1353d2cc491287-6fc3f-mvvdr] [613_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_003_chr4_0009' to sub-workflow 'CallGenome'
[2026-06-05T14:00:08.476801Z] [nf-554f8600c22dc2a63b1353d2cc491287-6fc3f-mvvdr] [613_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_003_chr4_0009' to sub-workflow 'CallGenome'
[2026-06-05T14:00:08.476924Z] [nf-554f8600c22dc2a63b1353d2cc491287-6fc3f-mvvdr] [613_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_003_chr4_0010' to sub-workflow 'CallGenome'
[2026-06-05T14:00:08.476989Z] [nf-554f8600c22dc2a63b1353d2cc491287-6fc3f-mvvdr] [613_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_003_chr4_0010' to sub-workflow 'CallGenome'
[2026-06-05T14:00:08.477110Z] [nf-554f8600c22dc2a63b1353d2cc491287-6fc3f-mvvdr] [613_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_003_chr4_0011' to sub-workflow 'CallGenome'
[2026-06-05T14:00:08.477182Z] [nf-554f8600c22dc2a63b1353d2cc491287-6fc3f-mvvdr] [613_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_003_chr4_0011' to sub-workflow 'CallGenome'
[2026-06-05T14:00:08.477322Z] [nf-554f8600c22dc2a63b1353d2cc491287-6fc3f-mvvdr] [613_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_003_chr4_0012' to sub-workflow 'CallGenome'
[2026-06-05T14:00:08.477413Z] [nf-554f8600c22dc2a63b1353d2cc491287-6fc3f-mvvdr] [613_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_003_chr4_0012' to sub-workflow 'CallGenome'
[2026-06-05T14:00:08.477564Z] [nf-554f8600c22dc2a63b1353d2cc491287-6fc3f-mvvdr] [613_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_003_chr4_0013' to sub-workflow 'CallGenome'
[2026-06-05T14:00:08.477659Z] [nf-554f8600c22dc2a63b1353d2cc491287-6fc3f-mvvdr] [613_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_003_chr4_0013' to sub-workflow 'CallGenome'
[2026-06-05T14:00:08.477909Z] [nf-554f8600c22dc2a63b1353d2cc491287-6fc3f-mvvdr] [613_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_003_chr4_0014' to sub-workflow 'CallGenome'
[2026-06-05T14:00:08.478157Z] [nf-554f8600c22dc2a63b1353d2cc491287-6fc3f-mvvdr] [613_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_003_chr4_0014' to sub-workflow 'CallGenome'
[2026-06-05T14:00:08.478549Z] [nf-554f8600c22dc2a63b1353d2cc491287-6fc3f-mvvdr] [613_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_003_chr4_0015' to sub-workflow 'CallGenome'
[2026-06-05T14:00:08.478655Z] [nf-554f8600c22dc2a63b1353d2cc491287-6fc3f-mvvdr] [613_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_003_chr4_0015' to sub-workflow 'CallGenome'
[2026-06-05T14:00:08.478811Z] [nf-554f8600c22dc2a63b1353d2cc491287-6fc3f-mvvdr] [613_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_004_chr5_0000' to sub-workflow 'CallGenome'
[2026-06-05T14:00:08.478889Z] [nf-554f8600c22dc2a63b1353d2cc491287-6fc3f-mvvdr] [613_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_004_chr5_0000' to sub-workflow 'CallGenome'
[2026-06-05T14:00:08.479010Z] [nf-554f8600c22dc2a63b1353d2cc491287-6fc3f-mvvdr] [613_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_004_chr5_0001' to sub-workflow 'CallGenome'
[2026-06-05T14:00:08.479075Z] [nf-554f8600c22dc2a63b1353d2cc491287-6fc3f-mvvdr] [613_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_004_chr5_0001' to sub-workflow 'CallGenome'
[2026-06-05T14:00:08.479214Z] [nf-554f8600c22dc2a63b1353d2cc491287-6fc3f-mvvdr] [613_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_004_chr5_0002' to sub-workflow 'CallGenome'
[2026-06-05T14:00:08.479277Z] [nf-554f8600c22dc2a63b1353d2cc491287-6fc3f-mvvdr] [613_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_004_chr5_0002' to sub-workflow 'CallGenome'
[2026-06-05T14:00:08.479390Z] [nf-554f8600c22dc2a63b1353d2cc491287-6fc3f-mvvdr] [613_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_004_chr5_0003' to sub-workflow 'CallGenome'
[2026-06-05T14:00:08.479470Z] [nf-554f8600c22dc2a63b1353d2cc491287-6fc3f-mvvdr] [613_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_004_chr5_0003' to sub-workflow 'CallGenome'
[2026-06-05T14:00:08.479769Z] [nf-554f8600c22dc2a63b1353d2cc491287-6fc3f-mvvdr] [613_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_004_chr5_0004' to sub-workflow 'CallGenome'
[2026-06-05T14:00:08.480208Z] [nf-554f8600c22dc2a63b1353d2cc491287-6fc3f-mvvdr] [613_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_004_chr5_0004' to sub-workflow 'CallGenome'
[2026-06-05T14:00:08.480377Z] [nf-554f8600c22dc2a63b1353d2cc491287-6fc3f-mvvdr] [613_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_004_chr5_0005' to sub-workflow 'CallGenome'
[2026-06-05T14:00:08.480542Z] [nf-554f8600c22dc2a63b1353d2cc491287-6fc3f-mvvdr] [613_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_004_chr5_0005' to sub-workflow 'CallGenome'
[2026-06-05T14:00:08.480673Z] [nf-554f8600c22dc2a63b1353d2cc491287-6fc3f-mvvdr] [613_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_004_chr5_0006' to sub-workflow 'CallGenome'
[2026-06-05T14:00:08.480746Z] [nf-554f8600c22dc2a63b1353d2cc491287-6fc3f-mvvdr] [613_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_004_chr5_0006' to sub-workflow 'CallGenome'
[2026-06-05T14:00:08.480859Z] [nf-554f8600c22dc2a63b1353d2cc491287-6fc3f-mvvdr] [613_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_004_chr5_0007' to sub-workflow 'CallGenome'
[2026-06-05T14:00:08.480929Z] [nf-554f8600c22dc2a63b1353d2cc491287-6fc3f-mvvdr] [613_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_004_chr5_0007' to sub-workflow 'CallGenome'
[2026-06-05T14:00:08.481132Z] [nf-554f8600c22dc2a63b1353d2cc491287-6fc3f-mvvdr] [613_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_004_chr5_0008' to sub-workflow 'CallGenome'
[2026-06-05T14:00:08.481394Z] [nf-554f8600c22dc2a63b1353d2cc491287-6fc3f-mvvdr] [613_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_004_chr5_0008' to sub-workflow 'CallGenome'
[2026-06-05T14:00:08.481841Z] [nf-554f8600c22dc2a63b1353d2cc491287-6fc3f-mvvdr] [613_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_004_chr5_0009' to sub-workflow 'CallGenome'
[2026-06-05T14:00:08.481908Z] [nf-554f8600c22dc2a63b1353d2cc491287-6fc3f-mvvdr] [613_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_004_chr5_0009' to sub-workflow 'CallGenome'
[2026-06-05T14:00:08.482022Z] [nf-554f8600c22dc2a63b1353d2cc491287-6fc3f-mvvdr] [613_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_004_chr5_0010' to sub-workflow 'CallGenome'
[2026-06-05T14:00:08.482099Z] [nf-554f8600c22dc2a63b1353d2cc491287-6fc3f-mvvdr] [613_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_004_chr5_0010' to sub-workflow 'CallGenome'
[2026-06-05T14:00:08.482207Z] [nf-554f8600c22dc2a63b1353d2cc491287-6fc3f-mvvdr] [613_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_004_chr5_0011' to sub-workflow 'CallGenome'
[2026-06-05T14:00:08.482272Z] [nf-554f8600c22dc2a63b1353d2cc491287-6fc3f-mvvdr] [613_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_004_chr5_0011' to sub-workflow 'CallGenome'
[2026-06-05T14:00:08.482385Z] [nf-554f8600c22dc2a63b1353d2cc491287-6fc3f-mvvdr] [613_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_004_chr5_0012' to sub-workflow 'CallGenome'
[2026-06-05T14:00:08.482446Z] [nf-554f8600c22dc2a63b1353d2cc491287-6fc3f-mvvdr] [613_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_004_chr5_0012' to sub-workflow 'CallGenome'
[2026-06-05T14:00:08.482561Z] [nf-554f8600c22dc2a63b1353d2cc491287-6fc3f-mvvdr] [613_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_004_chr5_0013' to sub-workflow 'CallGenome'
[2026-06-05T14:00:08.482624Z] [nf-554f8600c22dc2a63b1353d2cc491287-6fc3f-mvvdr] [613_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_004_chr5_0013' to sub-workflow 'CallGenome'
[2026-06-05T14:00:08.482729Z] [nf-554f8600c22dc2a63b1353d2cc491287-6fc3f-mvvdr] [613_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_004_chr5_0014' to sub-workflow 'CallGenome'
[2026-06-05T14:00:08.482800Z] [nf-554f8600c22dc2a63b1353d2cc491287-6fc3f-mvvdr] [613_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_004_chr5_0014' to sub-workflow 'CallGenome'
[2026-06-05T14:00:08.482966Z] [nf-554f8600c22dc2a63b1353d2cc491287-6fc3f-mvvdr] [613_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_004_chr5_0015' to sub-workflow 'CallGenome'
[2026-06-05T14:00:08.483289Z] [nf-554f8600c22dc2a63b1353d2cc491287-6fc3f-mvvdr] [613_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_004_chr5_0015' to sub-workflow 'CallGenome'
[2026-06-05T14:00:08.483880Z] [nf-554f8600c22dc2a63b1353d2cc491287-6fc3f-mvvdr] [613_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_005_chr6_0000' to sub-workflow 'CallGenome'
[2026-06-05T14:00:08.483955Z] [nf-554f8600c22dc2a63b1353d2cc491287-6fc3f-mvvdr] [613_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_005_chr6_0000' to sub-workflow 'CallGenome'
[2026-06-05T14:00:08.484067Z] [nf-554f8600c22dc2a63b1353d2cc491287-6fc3f-mvvdr] [613_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_005_chr6_0001' to sub-workflow 'CallGenome'
[2026-06-05T14:00:08.484131Z] [nf-554f8600c22dc2a63b1353d2cc491287-6fc3f-mvvdr] [613_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_005_chr6_0001' to sub-workflow 'CallGenome'
[2026-06-05T14:00:08.484244Z] [nf-554f8600c22dc2a63b1353d2cc491287-6fc3f-mvvdr] [613_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_005_chr6_0002' to sub-workflow 'CallGenome'
[2026-06-05T14:00:08.484307Z] [nf-554f8600c22dc2a63b1353d2cc491287-6fc3f-mvvdr] [613_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_005_chr6_0002' to sub-workflow 'CallGenome'
[2026-06-05T14:00:08.486584Z] [nf-554f8600c22dc2a63b1353d2cc491287-6fc3f-mvvdr] [613_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_005_chr6_0003' to sub-workflow 'CallGenome'
[2026-06-05T14:00:08.486791Z] [nf-554f8600c22dc2a63b1353d2cc491287-6fc3f-mvvdr] [613_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_005_chr6_0003' to sub-workflow 'CallGenome'
[2026-06-05T14:00:08.487486Z] [nf-554f8600c22dc2a63b1353d2cc491287-6fc3f-mvvdr] [613_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_005_chr6_0004' to sub-workflow 'CallGenome'
[2026-06-05T14:00:08.487566Z] [nf-554f8600c22dc2a63b1353d2cc491287-6fc3f-mvvdr] [613_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_005_chr6_0004' to sub-workflow 'CallGenome'
[2026-06-05T14:00:08.487683Z] [nf-554f8600c22dc2a63b1353d2cc491287-6fc3f-mvvdr] [613_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_005_chr6_0005' to sub-workflow 'CallGenome'
[2026-06-05T14:00:08.487753Z] [nf-554f8600c22dc2a63b1353d2cc491287-6fc3f-mvvdr] [613_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_005_chr6_0005' to sub-workflow 'CallGenome'
[2026-06-05T14:00:08.487909Z] [nf-554f8600c22dc2a63b1353d2cc491287-6fc3f-mvvdr] [613_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_005_chr6_0006' to sub-workflow 'CallGenome'
[2026-06-05T14:00:08.487980Z] [nf-554f8600c22dc2a63b1353d2cc491287-6fc3f-mvvdr] [613_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_005_chr6_0006' to sub-workflow 'CallGenome'
[2026-06-05T14:00:08.488142Z] [nf-554f8600c22dc2a63b1353d2cc491287-6fc3f-mvvdr] [613_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_005_chr6_0007' to sub-workflow 'CallGenome'
[2026-06-05T14:00:08.488227Z] [nf-554f8600c22dc2a63b1353d2cc491287-6fc3f-mvvdr] [613_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_005_chr6_0007' to sub-workflow 'CallGenome'
[2026-06-05T14:00:08.488377Z] [nf-554f8600c22dc2a63b1353d2cc491287-6fc3f-mvvdr] [613_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_005_chr6_0008' to sub-workflow 'CallGenome'
[2026-06-05T14:00:08.488618Z] [nf-554f8600c22dc2a63b1353d2cc491287-6fc3f-mvvdr] [613_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_005_chr6_0008' to sub-workflow 'CallGenome'
[2026-06-05T14:00:08.489471Z] [nf-554f8600c22dc2a63b1353d2cc491287-6fc3f-mvvdr] [613_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_005_chr6_0009' to sub-workflow 'CallGenome'
[2026-06-05T14:00:08.489600Z] [nf-554f8600c22dc2a63b1353d2cc491287-6fc3f-mvvdr] [613_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_005_chr6_0009' to sub-workflow 'CallGenome'
[2026-06-05T14:00:08.489737Z] [nf-554f8600c22dc2a63b1353d2cc491287-6fc3f-mvvdr] [613_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_005_chr6_0010' to sub-workflow 'CallGenome'
[2026-06-05T14:00:08.489810Z] [nf-554f8600c22dc2a63b1353d2cc491287-6fc3f-mvvdr] [613_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_005_chr6_0010' to sub-workflow 'CallGenome'
[2026-06-05T14:00:08.489946Z] [nf-554f8600c22dc2a63b1353d2cc491287-6fc3f-mvvdr] [613_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_005_chr6_0011' to sub-workflow 'CallGenome'
[2026-06-05T14:00:08.490020Z] [nf-554f8600c22dc2a63b1353d2cc491287-6fc3f-mvvdr] [613_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_005_chr6_0011' to sub-workflow 'CallGenome'
[2026-06-05T14:00:08.490150Z] [nf-554f8600c22dc2a63b1353d2cc491287-6fc3f-mvvdr] [613_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_005_chr6_0012' to sub-workflow 'CallGenome'
[2026-06-05T14:00:08.490222Z] [nf-554f8600c22dc2a63b1353d2cc491287-6fc3f-mvvdr] [613_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_005_chr6_0012' to sub-workflow 'CallGenome'
[2026-06-05T14:00:08.490553Z] [nf-554f8600c22dc2a63b1353d2cc491287-6fc3f-mvvdr] [613_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_005_chr6_0013' to sub-workflow 'CallGenome'
[2026-06-05T14:00:08.491361Z] [nf-554f8600c22dc2a63b1353d2cc491287-6fc3f-mvvdr] [613_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_005_chr6_0013' to sub-workflow 'CallGenome'
[2026-06-05T14:00:08.506423Z] [nf-554f8600c22dc2a63b1353d2cc491287-6fc3f-mvvdr] [613_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_005_chr6_0014' to sub-workflow 'CallGenome'
[2026-06-05T14:00:08.506562Z] [nf-554f8600c22dc2a63b1353d2cc491287-6fc3f-mvvdr] [613_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_005_chr6_0014' to sub-workflow 'CallGenome'
[2026-06-05T14:00:08.506645Z] [nf-554f8600c22dc2a63b1353d2cc491287-6fc3f-mvvdr] [613_1] [WorkflowRunner] Adding command task 'CallGenome+completedAllGenomeSegments' to sub-workflow 'CallGenome'
[2026-06-05T14:00:08.506887Z] [nf-554f8600c22dc2a63b1353d2cc491287-6fc3f-mvvdr] [613_1] [WorkflowRunner] Adding command task 'CallGenome+SNV_concat_vcf' to sub-workflow 'CallGenome'
[2026-06-05T14:00:08.506962Z] [nf-554f8600c22dc2a63b1353d2cc491287-6fc3f-mvvdr] [613_1] [WorkflowRunner] Adding command task 'CallGenome+SNV_index_vcf' to sub-workflow 'CallGenome'
[2026-06-05T14:00:08.507167Z] [nf-554f8600c22dc2a63b1353d2cc491287-6fc3f-mvvdr] [613_1] [WorkflowRunner] Adding command task 'CallGenome+Indel_concat_vcf' to sub-workflow 'CallGenome'
[2026-06-05T14:00:08.507241Z] [nf-554f8600c22dc2a63b1353d2cc491287-6fc3f-mvvdr] [613_1] [WorkflowRunner] Adding command task 'CallGenome+Indel_index_vcf' to sub-workflow 'CallGenome'
[2026-06-05T14:00:08.507383Z] [nf-554f8600c22dc2a63b1353d2cc491287-6fc3f-mvvdr] [613_1] [WorkflowRunner] Adding command task 'CallGenome+mergeRunStats' to sub-workflow 'CallGenome'
[2026-06-05T14:00:08.507456Z] [nf-554f8600c22dc2a63b1353d2cc491287-6fc3f-mvvdr] [613_1] [WorkflowRunner] Adding command task 'CallGenome+removeTmpDir' to sub-workflow 'CallGenome'
[2026-06-05T14:00:08.507511Z] [nf-554f8600c22dc2a63b1353d2cc491287-6fc3f-mvvdr] [613_1] [TaskRunner:CallGenome] Finished task specification for sub-workflow
[2026-06-05T14:00:08.514510Z] [nf-554f8600c22dc2a63b1353d2cc491287-6fc3f-mvvdr] [613_1] [TaskManager] Completed command task: 'CallGenome+makeTmpDir' launched from sub-workflow 'CallGenome'
[2026-06-05T14:00:08.515523Z] [nf-554f8600c22dc2a63b1353d2cc491287-6fc3f-mvvdr] [613_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0000' from sub-workflow 'CallGenome'
[2026-06-05T14:00:08.515941Z] [nf-554f8600c22dc2a63b1353d2cc491287-6fc3f-mvvdr] [613_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0014' from sub-workflow 'CallGenome'
[2026-06-05T14:00:08.516511Z] [nf-554f8600c22dc2a63b1353d2cc491287-6fc3f-mvvdr] [613_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0015' from sub-workflow 'CallGenome'
[2026-06-05T14:00:08.517192Z] [nf-554f8600c22dc2a63b1353d2cc491287-6fc3f-mvvdr] [613_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0013' from sub-workflow 'CallGenome'
[2026-06-05T14:00:08.518052Z] [nf-554f8600c22dc2a63b1353d2cc491287-6fc3f-mvvdr] [613_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0010' from sub-workflow 'CallGenome'
[2026-06-05T14:00:08.519082Z] [nf-554f8600c22dc2a63b1353d2cc491287-6fc3f-mvvdr] [613_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0013' from sub-workflow 'CallGenome'
[2026-06-05T14:00:08.520382Z] [nf-554f8600c22dc2a63b1353d2cc491287-6fc3f-mvvdr] [613_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0006' from sub-workflow 'CallGenome'
[2026-06-05T14:00:08.523271Z] [nf-554f8600c22dc2a63b1353d2cc491287-6fc3f-mvvdr] [613_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_004_chr5_0000] Task initiated on local node
[2026-06-05T14:00:08.523424Z] [nf-554f8600c22dc2a63b1353d2cc491287-6fc3f-mvvdr] [613_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0014' from sub-workflow 'CallGenome'
[2026-06-05T14:00:08.531736Z] [nf-554f8600c22dc2a63b1353d2cc491287-6fc3f-mvvdr] [613_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_003_chr4_0014] Task initiated on local node
[2026-06-05T14:00:08.532634Z] [nf-554f8600c22dc2a63b1353d2cc491287-6fc3f-mvvdr] [613_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_004_chr5_0015] Task initiated on local node
[2026-06-05T14:00:08.535961Z] [nf-554f8600c22dc2a63b1353d2cc491287-6fc3f-mvvdr] [613_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_005_chr6_0010] Task initiated on local node
[2026-06-05T14:00:08.539311Z] [nf-554f8600c22dc2a63b1353d2cc491287-6fc3f-mvvdr] [613_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_004_chr5_0013] Task initiated on local node
[2026-06-05T14:00:08.542547Z] [nf-554f8600c22dc2a63b1353d2cc491287-6fc3f-mvvdr] [613_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_005_chr6_0013] Task initiated on local node
[2026-06-05T14:00:08.544196Z] [nf-554f8600c22dc2a63b1353d2cc491287-6fc3f-mvvdr] [613_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_005_chr6_0014] Task initiated on local node
[2026-06-05T14:00:08.666327Z] [nf-554f8600c22dc2a63b1353d2cc491287-6fc3f-mvvdr] [613_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_003_chr4_0006] Task initiated on local node
[2026-06-05T14:00:08.689848Z] [nf-554f8600c22dc2a63b1353d2cc491287-6fc3f-mvvdr] [613_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0014' launched from sub-workflow 'CallGenome'
[2026-06-05T14:00:08.689954Z] [nf-554f8600c22dc2a63b1353d2cc491287-6fc3f-mvvdr] [613_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0013' launched from sub-workflow 'CallGenome'
[2026-06-05T14:00:08.691005Z] [nf-554f8600c22dc2a63b1353d2cc491287-6fc3f-mvvdr] [613_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0002' from sub-workflow 'CallGenome'
[2026-06-05T14:00:08.691396Z] [nf-554f8600c22dc2a63b1353d2cc491287-6fc3f-mvvdr] [613_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0012' from sub-workflow 'CallGenome'
[2026-06-05T14:00:08.699667Z] [nf-554f8600c22dc2a63b1353d2cc491287-6fc3f-mvvdr] [613_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_005_chr6_0002] Task initiated on local node
[2026-06-05T14:00:08.708775Z] [nf-554f8600c22dc2a63b1353d2cc491287-6fc3f-mvvdr] [613_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_005_chr6_0012] Task initiated on local node
[2026-06-05T14:00:09.161680Z] [nf-554f8600c22dc2a63b1353d2cc491287-6fc3f-mvvdr] [613_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0012' launched from sub-workflow 'CallGenome'
[2026-06-05T14:00:09.163162Z] [nf-554f8600c22dc2a63b1353d2cc491287-6fc3f-mvvdr] [613_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0008' from sub-workflow 'CallGenome'
[2026-06-05T14:00:09.166817Z] [nf-554f8600c22dc2a63b1353d2cc491287-6fc3f-mvvdr] [613_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_004_chr5_0008] Task initiated on local node
[2026-06-05T14:00:10.029476Z] [nf-554f8600c22dc2a63b1353d2cc491287-6fc3f-mvvdr] [613_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0014' launched from sub-workflow 'CallGenome'
[2026-06-05T14:00:10.030950Z] [nf-554f8600c22dc2a63b1353d2cc491287-6fc3f-mvvdr] [613_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0003' from sub-workflow 'CallGenome'
[2026-06-05T14:00:10.035436Z] [nf-554f8600c22dc2a63b1353d2cc491287-6fc3f-mvvdr] [613_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_004_chr5_0003] Task initiated on local node
[2026-06-05T14:00:10.096320Z] [nf-554f8600c22dc2a63b1353d2cc491287-6fc3f-mvvdr] [613_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0000' launched from sub-workflow 'CallGenome'
[2026-06-05T14:00:10.097837Z] [nf-554f8600c22dc2a63b1353d2cc491287-6fc3f-mvvdr] [613_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0003' from sub-workflow 'CallGenome'
[2026-06-05T14:00:10.101279Z] [nf-554f8600c22dc2a63b1353d2cc491287-6fc3f-mvvdr] [613_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_003_chr4_0003] Task initiated on local node
[2026-06-05T14:00:10.262697Z] [nf-554f8600c22dc2a63b1353d2cc491287-6fc3f-mvvdr] [613_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0010' launched from sub-workflow 'CallGenome'
[2026-06-05T14:00:10.264253Z] [nf-554f8600c22dc2a63b1353d2cc491287-6fc3f-mvvdr] [613_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0007' from sub-workflow 'CallGenome'
[2026-06-05T14:00:10.268553Z] [nf-554f8600c22dc2a63b1353d2cc491287-6fc3f-mvvdr] [613_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_005_chr6_0007] Task initiated on local node
[2026-06-05T14:00:10.379575Z] [nf-554f8600c22dc2a63b1353d2cc491287-6fc3f-mvvdr] [613_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0008' launched from sub-workflow 'CallGenome'
[2026-06-05T14:00:10.390481Z] [nf-554f8600c22dc2a63b1353d2cc491287-6fc3f-mvvdr] [613_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0001' from sub-workflow 'CallGenome'
[2026-06-05T14:00:10.394223Z] [nf-554f8600c22dc2a63b1353d2cc491287-6fc3f-mvvdr] [613_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_005_chr6_0001] Task initiated on local node
[2026-06-05T14:00:10.856304Z] [nf-554f8600c22dc2a63b1353d2cc491287-6fc3f-mvvdr] [613_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0013' launched from sub-workflow 'CallGenome'
[2026-06-05T14:00:10.857656Z] [nf-554f8600c22dc2a63b1353d2cc491287-6fc3f-mvvdr] [613_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0000' from sub-workflow 'CallGenome'
[2026-06-05T14:00:10.861664Z] [nf-554f8600c22dc2a63b1353d2cc491287-6fc3f-mvvdr] [613_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_003_chr4_0000] Task initiated on local node
[2026-06-05T14:00:10.972530Z] [nf-554f8600c22dc2a63b1353d2cc491287-6fc3f-mvvdr] [613_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0000' launched from sub-workflow 'CallGenome'
[2026-06-05T14:00:10.974085Z] [nf-554f8600c22dc2a63b1353d2cc491287-6fc3f-mvvdr] [613_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0013' from sub-workflow 'CallGenome'
[2026-06-05T14:00:10.977586Z] [nf-554f8600c22dc2a63b1353d2cc491287-6fc3f-mvvdr] [613_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_004_chr5_0013] Task initiated on local node
[2026-06-05T14:00:11.088511Z] [nf-554f8600c22dc2a63b1353d2cc491287-6fc3f-mvvdr] [613_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0013' launched from sub-workflow 'CallGenome'
[2026-06-05T14:00:11.090270Z] [nf-554f8600c22dc2a63b1353d2cc491287-6fc3f-mvvdr] [613_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0011' from sub-workflow 'CallGenome'
[2026-06-05T14:00:11.093904Z] [nf-554f8600c22dc2a63b1353d2cc491287-6fc3f-mvvdr] [613_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_004_chr5_0011] Task initiated on local node
[2026-06-05T14:00:11.205221Z] [nf-554f8600c22dc2a63b1353d2cc491287-6fc3f-mvvdr] [613_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0015' launched from sub-workflow 'CallGenome'
[2026-06-05T14:00:11.206685Z] [nf-554f8600c22dc2a63b1353d2cc491287-6fc3f-mvvdr] [613_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0013' from sub-workflow 'CallGenome'
[2026-06-05T14:00:11.211072Z] [nf-554f8600c22dc2a63b1353d2cc491287-6fc3f-mvvdr] [613_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_003_chr4_0013] Task initiated on local node
[2026-06-05T14:00:11.472472Z] [nf-554f8600c22dc2a63b1353d2cc491287-6fc3f-mvvdr] [613_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0002' launched from sub-workflow 'CallGenome'
[2026-06-05T14:00:11.472566Z] [nf-554f8600c22dc2a63b1353d2cc491287-6fc3f-mvvdr] [613_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0006' launched from sub-workflow 'CallGenome'
[2026-06-05T14:00:11.473895Z] [nf-554f8600c22dc2a63b1353d2cc491287-6fc3f-mvvdr] [613_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0010' from sub-workflow 'CallGenome'
[2026-06-05T14:00:11.474529Z] [nf-554f8600c22dc2a63b1353d2cc491287-6fc3f-mvvdr] [613_1] [TaskManager] Launching command task: 'CallGenome+fixVcfHeader_chromId_003_chr4_0000' from sub-workflow 'CallGenome'
[2026-06-05T14:00:11.478354Z] [nf-554f8600c22dc2a63b1353d2cc491287-6fc3f-mvvdr] [613_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_005_chr6_0010] Task initiated on local node
[2026-06-05T14:00:11.479842Z] [nf-554f8600c22dc2a63b1353d2cc491287-6fc3f-mvvdr] [613_1] [TaskRunner:CallGenome+fixVcfHeader_chromId_003_chr4_0000] Task initiated on local node
[2026-06-05T14:00:11.539839Z] [nf-554f8600c22dc2a63b1353d2cc491287-6fc3f-mvvdr] [613_1] [TaskManager] Completed command task: 'CallGenome+fixVcfHeader_chromId_003_chr4_0000' launched from sub-workflow 'CallGenome'
[2026-06-05T14:00:11.539945Z] [nf-554f8600c22dc2a63b1353d2cc491287-6fc3f-mvvdr] [613_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0010' launched from sub-workflow 'CallGenome'
[2026-06-05T14:00:11.541238Z] [nf-554f8600c22dc2a63b1353d2cc491287-6fc3f-mvvdr] [613_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0000' from sub-workflow 'CallGenome'
[2026-06-05T14:00:11.541918Z] [nf-554f8600c22dc2a63b1353d2cc491287-6fc3f-mvvdr] [613_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0014' from sub-workflow 'CallGenome'
[2026-06-05T14:00:11.545486Z] [nf-554f8600c22dc2a63b1353d2cc491287-6fc3f-mvvdr] [613_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_003_chr4_0000] Task initiated on local node
[2026-06-05T14:00:11.587309Z] [nf-554f8600c22dc2a63b1353d2cc491287-6fc3f-mvvdr] [613_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_003_chr4_0014] Task initiated on local node
[2026-06-05T14:00:11.606430Z] [nf-554f8600c22dc2a63b1353d2cc491287-6fc3f-mvvdr] [613_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0000' launched from sub-workflow 'CallGenome'
[2026-06-05T14:00:11.606538Z] [nf-554f8600c22dc2a63b1353d2cc491287-6fc3f-mvvdr] [613_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0001' launched from sub-workflow 'CallGenome'
[2026-06-05T14:00:11.606570Z] [nf-554f8600c22dc2a63b1353d2cc491287-6fc3f-mvvdr] [613_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0014' launched from sub-workflow 'CallGenome'
[2026-06-05T14:00:11.607801Z] [nf-554f8600c22dc2a63b1353d2cc491287-6fc3f-mvvdr] [613_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0005' from sub-workflow 'CallGenome'
[2026-06-05T14:00:11.608221Z] [nf-554f8600c22dc2a63b1353d2cc491287-6fc3f-mvvdr] [613_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0004' from sub-workflow 'CallGenome'
[2026-06-05T14:00:11.608939Z] [nf-554f8600c22dc2a63b1353d2cc491287-6fc3f-mvvdr] [613_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0008' from sub-workflow 'CallGenome'
[2026-06-05T14:00:11.613175Z] [nf-554f8600c22dc2a63b1353d2cc491287-6fc3f-mvvdr] [613_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_004_chr5_0008] Task initiated on local node
[2026-06-05T14:00:11.616112Z] [nf-554f8600c22dc2a63b1353d2cc491287-6fc3f-mvvdr] [613_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_005_chr6_0004] Task initiated on local node
[2026-06-05T14:00:11.617625Z] [nf-554f8600c22dc2a63b1353d2cc491287-6fc3f-mvvdr] [613_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_004_chr5_0005] Task initiated on local node
[2026-06-05T14:00:11.675174Z] [nf-554f8600c22dc2a63b1353d2cc491287-6fc3f-mvvdr] [613_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0008' launched from sub-workflow 'CallGenome'
[2026-06-05T14:00:11.676428Z] [nf-554f8600c22dc2a63b1353d2cc491287-6fc3f-mvvdr] [613_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0014' from sub-workflow 'CallGenome'
[2026-06-05T14:00:11.680402Z] [nf-554f8600c22dc2a63b1353d2cc491287-6fc3f-mvvdr] [613_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_004_chr5_0014] Task initiated on local node
[2026-06-05T14:00:11.791421Z] [nf-554f8600c22dc2a63b1353d2cc491287-6fc3f-mvvdr] [613_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0007' launched from sub-workflow 'CallGenome'
[2026-06-05T14:00:11.792727Z] [nf-554f8600c22dc2a63b1353d2cc491287-6fc3f-mvvdr] [613_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0012' from sub-workflow 'CallGenome'
[2026-06-05T14:00:11.796061Z] [nf-554f8600c22dc2a63b1353d2cc491287-6fc3f-mvvdr] [613_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_005_chr6_0012] Task initiated on local node
[2026-06-05T14:00:11.857131Z] [nf-554f8600c22dc2a63b1353d2cc491287-6fc3f-mvvdr] [613_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0012' launched from sub-workflow 'CallGenome'
[2026-06-05T14:00:11.858440Z] [nf-554f8600c22dc2a63b1353d2cc491287-6fc3f-mvvdr] [613_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0011' from sub-workflow 'CallGenome'
[2026-06-05T14:00:11.862426Z] [nf-554f8600c22dc2a63b1353d2cc491287-6fc3f-mvvdr] [613_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_003_chr4_0011] Task initiated on local node
[2026-06-05T14:00:11.973814Z] [nf-554f8600c22dc2a63b1353d2cc491287-6fc3f-mvvdr] [613_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0003' launched from sub-workflow 'CallGenome'
[2026-06-05T14:00:11.973920Z] [nf-554f8600c22dc2a63b1353d2cc491287-6fc3f-mvvdr] [613_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0003' launched from sub-workflow 'CallGenome'
[2026-06-05T14:00:11.975215Z] [nf-554f8600c22dc2a63b1353d2cc491287-6fc3f-mvvdr] [613_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0002' from sub-workflow 'CallGenome'
[2026-06-05T14:00:11.975858Z] [nf-554f8600c22dc2a63b1353d2cc491287-6fc3f-mvvdr] [613_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0003' from sub-workflow 'CallGenome'
[2026-06-05T14:00:11.981073Z] [nf-554f8600c22dc2a63b1353d2cc491287-6fc3f-mvvdr] [613_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_005_chr6_0002] Task initiated on local node
[2026-06-05T14:00:11.982098Z] [nf-554f8600c22dc2a63b1353d2cc491287-6fc3f-mvvdr] [613_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_003_chr4_0003] Task initiated on local node
[2026-06-05T14:00:12.041969Z] [nf-554f8600c22dc2a63b1353d2cc491287-6fc3f-mvvdr] [613_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0002' launched from sub-workflow 'CallGenome'
[2026-06-05T14:00:12.042121Z] [nf-554f8600c22dc2a63b1353d2cc491287-6fc3f-mvvdr] [613_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0003' launched from sub-workflow 'CallGenome'
[2026-06-05T14:00:12.043391Z] [nf-554f8600c22dc2a63b1353d2cc491287-6fc3f-mvvdr] [613_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0010' from sub-workflow 'CallGenome'
[2026-06-05T14:00:12.044128Z] [nf-554f8600c22dc2a63b1353d2cc491287-6fc3f-mvvdr] [613_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0005' from sub-workflow 'CallGenome'
[2026-06-05T14:00:12.048205Z] [nf-554f8600c22dc2a63b1353d2cc491287-6fc3f-mvvdr] [613_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_004_chr5_0010] Task initiated on local node
[2026-06-05T14:00:12.049930Z] [nf-554f8600c22dc2a63b1353d2cc491287-6fc3f-mvvdr] [613_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_003_chr4_0005] Task initiated on local node
[2026-06-05T14:00:12.510231Z] [nf-554f8600c22dc2a63b1353d2cc491287-6fc3f-mvvdr] [613_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0013' launched from sub-workflow 'CallGenome'
[2026-06-05T14:00:12.511366Z] [nf-554f8600c22dc2a63b1353d2cc491287-6fc3f-mvvdr] [613_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0009' from sub-workflow 'CallGenome'
[2026-06-05T14:00:12.515319Z] [nf-554f8600c22dc2a63b1353d2cc491287-6fc3f-mvvdr] [613_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_005_chr6_0009] Task initiated on local node
[2026-06-05T14:00:12.776883Z] [nf-554f8600c22dc2a63b1353d2cc491287-6fc3f-mvvdr] [613_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0011' launched from sub-workflow 'CallGenome'
[2026-06-05T14:00:12.778116Z] [nf-554f8600c22dc2a63b1353d2cc491287-6fc3f-mvvdr] [613_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0000' from sub-workflow 'CallGenome'
[2026-06-05T14:00:12.781220Z] [nf-554f8600c22dc2a63b1353d2cc491287-6fc3f-mvvdr] [613_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_004_chr5_0000] Task initiated on local node
[2026-06-05T14:00:12.842490Z] [nf-554f8600c22dc2a63b1353d2cc491287-6fc3f-mvvdr] [613_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0000' launched from sub-workflow 'CallGenome'
[2026-06-05T14:00:12.843743Z] [nf-554f8600c22dc2a63b1353d2cc491287-6fc3f-mvvdr] [613_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0003' from sub-workflow 'CallGenome'
[2026-06-05T14:00:12.847437Z] [nf-554f8600c22dc2a63b1353d2cc491287-6fc3f-mvvdr] [613_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_004_chr5_0003] Task initiated on local node
[2026-06-05T14:00:12.876376Z] [nf-554f8600c22dc2a63b1353d2cc491287-6fc3f-mvvdr] [613_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0014' launched from sub-workflow 'CallGenome'
[2026-06-05T14:00:12.877292Z] [nf-554f8600c22dc2a63b1353d2cc491287-6fc3f-mvvdr] [613_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0014' from sub-workflow 'CallGenome'
[2026-06-05T14:00:12.880453Z] [nf-554f8600c22dc2a63b1353d2cc491287-6fc3f-mvvdr] [613_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_004_chr5_0014] Task initiated on local node
[2026-06-05T14:00:12.885388Z] [nf-554f8600c22dc2a63b1353d2cc491287-6fc3f-mvvdr] [613_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0003' launched from sub-workflow 'CallGenome'
[2026-06-05T14:00:12.886211Z] [nf-554f8600c22dc2a63b1353d2cc491287-6fc3f-mvvdr] [613_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0012' from sub-workflow 'CallGenome'
[2026-06-05T14:00:12.890034Z] [nf-554f8600c22dc2a63b1353d2cc491287-6fc3f-mvvdr] [613_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_004_chr5_0012] Task initiated on local node
[2026-06-05T14:00:12.918900Z] [nf-554f8600c22dc2a63b1353d2cc491287-6fc3f-mvvdr] [613_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0014' launched from sub-workflow 'CallGenome'
[2026-06-05T14:00:12.919874Z] [nf-554f8600c22dc2a63b1353d2cc491287-6fc3f-mvvdr] [613_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0007' from sub-workflow 'CallGenome'
[2026-06-05T14:00:12.922798Z] [nf-554f8600c22dc2a63b1353d2cc491287-6fc3f-mvvdr] [613_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_005_chr6_0007] Task initiated on local node
[2026-06-05T14:00:12.984471Z] [nf-554f8600c22dc2a63b1353d2cc491287-6fc3f-mvvdr] [613_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0007' launched from sub-workflow 'CallGenome'
[2026-06-05T14:00:12.985408Z] [nf-554f8600c22dc2a63b1353d2cc491287-6fc3f-mvvdr] [613_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0013' from sub-workflow 'CallGenome'
[2026-06-05T14:00:12.989050Z] [nf-554f8600c22dc2a63b1353d2cc491287-6fc3f-mvvdr] [613_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_003_chr4_0013] Task initiated on local node
[2026-06-05T14:00:13.050496Z] [nf-554f8600c22dc2a63b1353d2cc491287-6fc3f-mvvdr] [613_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0013' launched from sub-workflow 'CallGenome'
[2026-06-05T14:00:13.051618Z] [nf-554f8600c22dc2a63b1353d2cc491287-6fc3f-mvvdr] [613_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0008' from sub-workflow 'CallGenome'
[2026-06-05T14:00:13.055188Z] [nf-554f8600c22dc2a63b1353d2cc491287-6fc3f-mvvdr] [613_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_003_chr4_0008] Task initiated on local node
[2026-06-05T14:00:13.166646Z] [nf-554f8600c22dc2a63b1353d2cc491287-6fc3f-mvvdr] [613_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0005' launched from sub-workflow 'CallGenome'
[2026-06-05T14:00:13.167682Z] [nf-554f8600c22dc2a63b1353d2cc491287-6fc3f-mvvdr] [613_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0005' from sub-workflow 'CallGenome'
[2026-06-05T14:00:13.171222Z] [nf-554f8600c22dc2a63b1353d2cc491287-6fc3f-mvvdr] [613_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_004_chr5_0005] Task initiated on local node
[2026-06-05T14:00:13.232552Z] [nf-554f8600c22dc2a63b1353d2cc491287-6fc3f-mvvdr] [613_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0005' launched from sub-workflow 'CallGenome'
[2026-06-05T14:00:13.232681Z] [nf-554f8600c22dc2a63b1353d2cc491287-6fc3f-mvvdr] [613_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0005' launched from sub-workflow 'CallGenome'
[2026-06-05T14:00:13.234298Z] [nf-554f8600c22dc2a63b1353d2cc491287-6fc3f-mvvdr] [613_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0005' from sub-workflow 'CallGenome'
[2026-06-05T14:00:13.234713Z] [nf-554f8600c22dc2a63b1353d2cc491287-6fc3f-mvvdr] [613_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0012' from sub-workflow 'CallGenome'
[2026-06-05T14:00:13.235248Z] [nf-554f8600c22dc2a63b1353d2cc491287-6fc3f-mvvdr] [613_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0010' launched from sub-workflow 'CallGenome'
[2026-06-05T14:00:13.238703Z] [nf-554f8600c22dc2a63b1353d2cc491287-6fc3f-mvvdr] [613_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_003_chr4_0005] Task initiated on local node
[2026-06-05T14:00:13.239572Z] [nf-554f8600c22dc2a63b1353d2cc491287-6fc3f-mvvdr] [613_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0014' from sub-workflow 'CallGenome'
[2026-06-05T14:00:13.242215Z] [nf-554f8600c22dc2a63b1353d2cc491287-6fc3f-mvvdr] [613_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_003_chr4_0012] Task initiated on local node
[2026-06-05T14:00:13.244735Z] [nf-554f8600c22dc2a63b1353d2cc491287-6fc3f-mvvdr] [613_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_005_chr6_0014] Task initiated on local node
[2026-06-05T14:00:13.273905Z] [nf-554f8600c22dc2a63b1353d2cc491287-6fc3f-mvvdr] [613_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0005' launched from sub-workflow 'CallGenome'
[2026-06-05T14:00:13.274831Z] [nf-554f8600c22dc2a63b1353d2cc491287-6fc3f-mvvdr] [613_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0002' from sub-workflow 'CallGenome'
[2026-06-05T14:00:13.278447Z] [nf-554f8600c22dc2a63b1353d2cc491287-6fc3f-mvvdr] [613_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_003_chr4_0002] Task initiated on local node
[2026-06-05T14:00:13.279125Z] [nf-554f8600c22dc2a63b1353d2cc491287-6fc3f-mvvdr] [613_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0014' launched from sub-workflow 'CallGenome'
[2026-06-05T14:00:13.279988Z] [nf-554f8600c22dc2a63b1353d2cc491287-6fc3f-mvvdr] [613_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0002' from sub-workflow 'CallGenome'
[2026-06-05T14:00:13.283533Z] [nf-554f8600c22dc2a63b1353d2cc491287-6fc3f-mvvdr] [613_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_004_chr5_0002] Task initiated on local node
[2026-06-05T14:00:13.312782Z] [nf-554f8600c22dc2a63b1353d2cc491287-6fc3f-mvvdr] [613_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0011' launched from sub-workflow 'CallGenome'
[2026-06-05T14:00:13.313845Z] [nf-554f8600c22dc2a63b1353d2cc491287-6fc3f-mvvdr] [613_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0011' from sub-workflow 'CallGenome'
[2026-06-05T14:00:13.316919Z] [nf-554f8600c22dc2a63b1353d2cc491287-6fc3f-mvvdr] [613_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_004_chr5_0011] Task initiated on local node
[2026-06-05T14:00:13.378452Z] [nf-554f8600c22dc2a63b1353d2cc491287-6fc3f-mvvdr] [613_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0011' launched from sub-workflow 'CallGenome'
[2026-06-05T14:00:13.379512Z] [nf-554f8600c22dc2a63b1353d2cc491287-6fc3f-mvvdr] [613_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0006' from sub-workflow 'CallGenome'
[2026-06-05T14:00:13.383534Z] [nf-554f8600c22dc2a63b1353d2cc491287-6fc3f-mvvdr] [613_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_003_chr4_0006] Task initiated on local node
[2026-06-05T14:00:13.444638Z] [nf-554f8600c22dc2a63b1353d2cc491287-6fc3f-mvvdr] [613_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0006' launched from sub-workflow 'CallGenome'
[2026-06-05T14:00:13.445738Z] [nf-554f8600c22dc2a63b1353d2cc491287-6fc3f-mvvdr] [613_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0001' from sub-workflow 'CallGenome'
[2026-06-05T14:00:13.449333Z] [nf-554f8600c22dc2a63b1353d2cc491287-6fc3f-mvvdr] [613_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_003_chr4_0001] Task initiated on local node
[2026-06-05T14:00:13.560643Z] [nf-554f8600c22dc2a63b1353d2cc491287-6fc3f-mvvdr] [613_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0004' launched from sub-workflow 'CallGenome'
[2026-06-05T14:00:13.561635Z] [nf-554f8600c22dc2a63b1353d2cc491287-6fc3f-mvvdr] [613_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0010' from sub-workflow 'CallGenome'
[2026-06-05T14:00:13.565221Z] [nf-554f8600c22dc2a63b1353d2cc491287-6fc3f-mvvdr] [613_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_004_chr5_0010] Task initiated on local node
[2026-06-05T14:00:13.626432Z] [nf-554f8600c22dc2a63b1353d2cc491287-6fc3f-mvvdr] [613_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0010' launched from sub-workflow 'CallGenome'
[2026-06-05T14:00:13.626542Z] [nf-554f8600c22dc2a63b1353d2cc491287-6fc3f-mvvdr] [613_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0001' launched from sub-workflow 'CallGenome'
[2026-06-05T14:00:13.627456Z] [nf-554f8600c22dc2a63b1353d2cc491287-6fc3f-mvvdr] [613_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0001' from sub-workflow 'CallGenome'
[2026-06-05T14:00:13.627882Z] [nf-554f8600c22dc2a63b1353d2cc491287-6fc3f-mvvdr] [613_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0006' from sub-workflow 'CallGenome'
[2026-06-05T14:00:13.633057Z] [nf-554f8600c22dc2a63b1353d2cc491287-6fc3f-mvvdr] [613_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_003_chr4_0001] Task initiated on local node
[2026-06-05T14:00:13.633890Z] [nf-554f8600c22dc2a63b1353d2cc491287-6fc3f-mvvdr] [613_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_005_chr6_0006] Task initiated on local node
[2026-06-05T14:00:13.693392Z] [nf-554f8600c22dc2a63b1353d2cc491287-6fc3f-mvvdr] [613_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0001' launched from sub-workflow 'CallGenome'
[2026-06-05T14:00:13.694435Z] [nf-554f8600c22dc2a63b1353d2cc491287-6fc3f-mvvdr] [613_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0015' from sub-workflow 'CallGenome'
[2026-06-05T14:00:13.698029Z] [nf-554f8600c22dc2a63b1353d2cc491287-6fc3f-mvvdr] [613_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_003_chr4_0015] Task initiated on local node
[2026-06-05T14:00:14.059941Z] [nf-554f8600c22dc2a63b1353d2cc491287-6fc3f-mvvdr] [613_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0002' launched from sub-workflow 'CallGenome'
[2026-06-05T14:00:14.060906Z] [nf-554f8600c22dc2a63b1353d2cc491287-6fc3f-mvvdr] [613_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0000' from sub-workflow 'CallGenome'
[2026-06-05T14:00:14.064295Z] [nf-554f8600c22dc2a63b1353d2cc491287-6fc3f-mvvdr] [613_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_005_chr6_0000] Task initiated on local node
[2026-06-05T14:00:14.226193Z] [nf-554f8600c22dc2a63b1353d2cc491287-6fc3f-mvvdr] [613_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0002' launched from sub-workflow 'CallGenome'
[2026-06-05T14:00:14.227115Z] [nf-554f8600c22dc2a63b1353d2cc491287-6fc3f-mvvdr] [613_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0011' from sub-workflow 'CallGenome'
[2026-06-05T14:00:14.231145Z] [nf-554f8600c22dc2a63b1353d2cc491287-6fc3f-mvvdr] [613_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_003_chr4_0011] Task initiated on local node
[2026-06-05T14:00:14.292092Z] [nf-554f8600c22dc2a63b1353d2cc491287-6fc3f-mvvdr] [613_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0011' launched from sub-workflow 'CallGenome'
[2026-06-05T14:00:14.293020Z] [nf-554f8600c22dc2a63b1353d2cc491287-6fc3f-mvvdr] [613_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0007' from sub-workflow 'CallGenome'
[2026-06-05T14:00:14.296691Z] [nf-554f8600c22dc2a63b1353d2cc491287-6fc3f-mvvdr] [613_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_003_chr4_0007] Task initiated on local node
[2026-06-05T14:00:14.508938Z] [nf-554f8600c22dc2a63b1353d2cc491287-6fc3f-mvvdr] [613_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0009' launched from sub-workflow 'CallGenome'
[2026-06-05T14:00:14.510137Z] [nf-554f8600c22dc2a63b1353d2cc491287-6fc3f-mvvdr] [613_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0013' from sub-workflow 'CallGenome'
[2026-06-05T14:00:14.513635Z] [nf-554f8600c22dc2a63b1353d2cc491287-6fc3f-mvvdr] [613_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_005_chr6_0013] Task initiated on local node
[2026-06-05T14:00:14.574710Z] [nf-554f8600c22dc2a63b1353d2cc491287-6fc3f-mvvdr] [613_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0013' launched from sub-workflow 'CallGenome'
[2026-06-05T14:00:14.575935Z] [nf-554f8600c22dc2a63b1353d2cc491287-6fc3f-mvvdr] [613_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0009' from sub-workflow 'CallGenome'
[2026-06-05T14:00:14.579592Z] [nf-554f8600c22dc2a63b1353d2cc491287-6fc3f-mvvdr] [613_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_003_chr4_0009] Task initiated on local node
[2026-06-05T14:00:14.690956Z] [nf-554f8600c22dc2a63b1353d2cc491287-6fc3f-mvvdr] [613_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0015' launched from sub-workflow 'CallGenome'
[2026-06-05T14:00:14.691932Z] [nf-554f8600c22dc2a63b1353d2cc491287-6fc3f-mvvdr] [613_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0004' from sub-workflow 'CallGenome'
[2026-06-05T14:00:14.695578Z] [nf-554f8600c22dc2a63b1353d2cc491287-6fc3f-mvvdr] [613_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_005_chr6_0004] Task initiated on local node
[2026-06-05T14:00:14.756835Z] [nf-554f8600c22dc2a63b1353d2cc491287-6fc3f-mvvdr] [613_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0004' launched from sub-workflow 'CallGenome'
[2026-06-05T14:00:14.757841Z] [nf-554f8600c22dc2a63b1353d2cc491287-6fc3f-mvvdr] [613_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0009' from sub-workflow 'CallGenome'
[2026-06-05T14:00:14.761250Z] [nf-554f8600c22dc2a63b1353d2cc491287-6fc3f-mvvdr] [613_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_005_chr6_0009] Task initiated on local node
[2026-06-05T14:00:14.790505Z] [nf-554f8600c22dc2a63b1353d2cc491287-6fc3f-mvvdr] [613_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0008' launched from sub-workflow 'CallGenome'
[2026-06-05T14:00:14.791329Z] [nf-554f8600c22dc2a63b1353d2cc491287-6fc3f-mvvdr] [613_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0011' from sub-workflow 'CallGenome'
[2026-06-05T14:00:14.795153Z] [nf-554f8600c22dc2a63b1353d2cc491287-6fc3f-mvvdr] [613_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_005_chr6_0011] Task initiated on local node
[2026-06-05T14:00:14.807962Z] [nf-554f8600c22dc2a63b1353d2cc491287-6fc3f-mvvdr] [613_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0009' launched from sub-workflow 'CallGenome'
[2026-06-05T14:00:14.808922Z] [nf-554f8600c22dc2a63b1353d2cc491287-6fc3f-mvvdr] [613_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0009' from sub-workflow 'CallGenome'
[2026-06-05T14:00:14.812638Z] [nf-554f8600c22dc2a63b1353d2cc491287-6fc3f-mvvdr] [613_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_004_chr5_0009] Task initiated on local node
[2026-06-05T14:00:15.174952Z] [nf-554f8600c22dc2a63b1353d2cc491287-6fc3f-mvvdr] [613_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0012' launched from sub-workflow 'CallGenome'
[2026-06-05T14:00:15.175877Z] [nf-554f8600c22dc2a63b1353d2cc491287-6fc3f-mvvdr] [613_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0004' from sub-workflow 'CallGenome'
[2026-06-05T14:00:15.179996Z] [nf-554f8600c22dc2a63b1353d2cc491287-6fc3f-mvvdr] [613_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_004_chr5_0004] Task initiated on local node
[2026-06-05T14:00:15.208942Z] [nf-554f8600c22dc2a63b1353d2cc491287-6fc3f-mvvdr] [613_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0006' launched from sub-workflow 'CallGenome'
[2026-06-05T14:00:15.209899Z] [nf-554f8600c22dc2a63b1353d2cc491287-6fc3f-mvvdr] [613_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0006' from sub-workflow 'CallGenome'
[2026-06-05T14:00:15.213619Z] [nf-554f8600c22dc2a63b1353d2cc491287-6fc3f-mvvdr] [613_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_005_chr6_0006] Task initiated on local node
[2026-06-05T14:00:15.274971Z] [nf-554f8600c22dc2a63b1353d2cc491287-6fc3f-mvvdr] [613_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0006' launched from sub-workflow 'CallGenome'
[2026-06-05T14:00:15.275907Z] [nf-554f8600c22dc2a63b1353d2cc491287-6fc3f-mvvdr] [613_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0010' from sub-workflow 'CallGenome'
[2026-06-05T14:00:15.279734Z] [nf-554f8600c22dc2a63b1353d2cc491287-6fc3f-mvvdr] [613_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_003_chr4_0010] Task initiated on local node
[2026-06-05T14:00:15.390885Z] [nf-554f8600c22dc2a63b1353d2cc491287-6fc3f-mvvdr] [613_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0012' launched from sub-workflow 'CallGenome'
[2026-06-05T14:00:15.391772Z] [nf-554f8600c22dc2a63b1353d2cc491287-6fc3f-mvvdr] [613_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0003' from sub-workflow 'CallGenome'
[2026-06-05T14:00:15.395824Z] [nf-554f8600c22dc2a63b1353d2cc491287-6fc3f-mvvdr] [613_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_005_chr6_0003] Task initiated on local node
[2026-06-05T14:00:15.506741Z] [nf-554f8600c22dc2a63b1353d2cc491287-6fc3f-mvvdr] [613_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0000' launched from sub-workflow 'CallGenome'
[2026-06-05T14:00:15.507600Z] [nf-554f8600c22dc2a63b1353d2cc491287-6fc3f-mvvdr] [613_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0000' from sub-workflow 'CallGenome'
[2026-06-05T14:00:15.510940Z] [nf-554f8600c22dc2a63b1353d2cc491287-6fc3f-mvvdr] [613_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_005_chr6_0000] Task initiated on local node
[2026-06-05T14:00:15.572243Z] [nf-554f8600c22dc2a63b1353d2cc491287-6fc3f-mvvdr] [613_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0000' launched from sub-workflow 'CallGenome'
[2026-06-05T14:00:15.573151Z] [nf-554f8600c22dc2a63b1353d2cc491287-6fc3f-mvvdr] [613_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0007' from sub-workflow 'CallGenome'
[2026-06-05T14:00:15.576369Z] [nf-554f8600c22dc2a63b1353d2cc491287-6fc3f-mvvdr] [613_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_004_chr5_0007] Task initiated on local node
[2026-06-05T14:00:15.838706Z] [nf-554f8600c22dc2a63b1353d2cc491287-6fc3f-mvvdr] [613_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0007' launched from sub-workflow 'CallGenome'
[2026-06-05T14:00:15.838841Z] [nf-554f8600c22dc2a63b1353d2cc491287-6fc3f-mvvdr] [613_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0009' launched from sub-workflow 'CallGenome'
[2026-06-05T14:00:15.839633Z] [nf-554f8600c22dc2a63b1353d2cc491287-6fc3f-mvvdr] [613_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0015' from sub-workflow 'CallGenome'
[2026-06-05T14:00:15.840133Z] [nf-554f8600c22dc2a63b1353d2cc491287-6fc3f-mvvdr] [613_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0007' from sub-workflow 'CallGenome'
[2026-06-05T14:00:15.844101Z] [nf-554f8600c22dc2a63b1353d2cc491287-6fc3f-mvvdr] [613_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_003_chr4_0015] Task initiated on local node
[2026-06-05T14:00:15.845679Z] [nf-554f8600c22dc2a63b1353d2cc491287-6fc3f-mvvdr] [613_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_003_chr4_0007] Task initiated on local node
[2026-06-05T14:00:15.905226Z] [nf-554f8600c22dc2a63b1353d2cc491287-6fc3f-mvvdr] [613_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0007' launched from sub-workflow 'CallGenome'
[2026-06-05T14:00:15.905376Z] [nf-554f8600c22dc2a63b1353d2cc491287-6fc3f-mvvdr] [613_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0015' launched from sub-workflow 'CallGenome'
[2026-06-05T14:00:15.906162Z] [nf-554f8600c22dc2a63b1353d2cc491287-6fc3f-mvvdr] [613_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0009' from sub-workflow 'CallGenome'
[2026-06-05T14:00:15.906670Z] [nf-554f8600c22dc2a63b1353d2cc491287-6fc3f-mvvdr] [613_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0001' from sub-workflow 'CallGenome'
[2026-06-05T14:00:15.910626Z] [nf-554f8600c22dc2a63b1353d2cc491287-6fc3f-mvvdr] [613_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_003_chr4_0009] Task initiated on local node
[2026-06-05T14:00:15.911710Z] [nf-554f8600c22dc2a63b1353d2cc491287-6fc3f-mvvdr] [613_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_004_chr5_0001] Task initiated on local node
[2026-06-05T14:00:15.971789Z] [nf-554f8600c22dc2a63b1353d2cc491287-6fc3f-mvvdr] [613_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0009' launched from sub-workflow 'CallGenome'
[2026-06-05T14:00:15.972557Z] [nf-554f8600c22dc2a63b1353d2cc491287-6fc3f-mvvdr] [613_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0006' from sub-workflow 'CallGenome'
[2026-06-05T14:00:15.976162Z] [nf-554f8600c22dc2a63b1353d2cc491287-6fc3f-mvvdr] [613_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_004_chr5_0006] Task initiated on local node
[2026-06-05T14:00:15.980806Z] [nf-554f8600c22dc2a63b1353d2cc491287-6fc3f-mvvdr] [613_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0009' launched from sub-workflow 'CallGenome'
[2026-06-05T14:00:15.981493Z] [nf-554f8600c22dc2a63b1353d2cc491287-6fc3f-mvvdr] [613_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0005' from sub-workflow 'CallGenome'
[2026-06-05T14:00:15.984942Z] [nf-554f8600c22dc2a63b1353d2cc491287-6fc3f-mvvdr] [613_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_005_chr6_0005] Task initiated on local node
[2026-06-05T14:00:16.046258Z] [nf-554f8600c22dc2a63b1353d2cc491287-6fc3f-mvvdr] [613_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0004' launched from sub-workflow 'CallGenome'
[2026-06-05T14:00:16.047084Z] [nf-554f8600c22dc2a63b1353d2cc491287-6fc3f-mvvdr] [613_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0001' from sub-workflow 'CallGenome'
[2026-06-05T14:00:16.050577Z] [nf-554f8600c22dc2a63b1353d2cc491287-6fc3f-mvvdr] [613_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_005_chr6_0001] Task initiated on local node
[2026-06-05T14:00:16.111524Z] [nf-554f8600c22dc2a63b1353d2cc491287-6fc3f-mvvdr] [613_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0001' launched from sub-workflow 'CallGenome'
[2026-06-05T14:00:16.112246Z] [nf-554f8600c22dc2a63b1353d2cc491287-6fc3f-mvvdr] [613_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0015' from sub-workflow 'CallGenome'
[2026-06-05T14:00:16.115565Z] [nf-554f8600c22dc2a63b1353d2cc491287-6fc3f-mvvdr] [613_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_004_chr5_0015] Task initiated on local node
[2026-06-05T14:00:16.144264Z] [nf-554f8600c22dc2a63b1353d2cc491287-6fc3f-mvvdr] [613_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0015' launched from sub-workflow 'CallGenome'
[2026-06-05T14:00:16.144882Z] [nf-554f8600c22dc2a63b1353d2cc491287-6fc3f-mvvdr] [613_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0004' from sub-workflow 'CallGenome'
[2026-06-05T14:00:16.148193Z] [nf-554f8600c22dc2a63b1353d2cc491287-6fc3f-mvvdr] [613_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_004_chr5_0004] Task initiated on local node
[2026-06-05T14:00:16.177300Z] [nf-554f8600c22dc2a63b1353d2cc491287-6fc3f-mvvdr] [613_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0004' launched from sub-workflow 'CallGenome'
[2026-06-05T14:00:16.177963Z] [nf-554f8600c22dc2a63b1353d2cc491287-6fc3f-mvvdr] [613_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0012' from sub-workflow 'CallGenome'
[2026-06-05T14:00:16.181476Z] [nf-554f8600c22dc2a63b1353d2cc491287-6fc3f-mvvdr] [613_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_003_chr4_0012] Task initiated on local node
[2026-06-05T14:00:16.242522Z] [nf-554f8600c22dc2a63b1353d2cc491287-6fc3f-mvvdr] [613_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0012' launched from sub-workflow 'CallGenome'
[2026-06-05T14:00:16.243221Z] [nf-554f8600c22dc2a63b1353d2cc491287-6fc3f-mvvdr] [613_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0002' from sub-workflow 'CallGenome'
[2026-06-05T14:00:16.246303Z] [nf-554f8600c22dc2a63b1353d2cc491287-6fc3f-mvvdr] [613_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_004_chr5_0002] Task initiated on local node
[2026-06-05T14:00:16.307597Z] [nf-554f8600c22dc2a63b1353d2cc491287-6fc3f-mvvdr] [613_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0002' launched from sub-workflow 'CallGenome'
[2026-06-05T14:00:16.308330Z] [nf-554f8600c22dc2a63b1353d2cc491287-6fc3f-mvvdr] [613_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0009' from sub-workflow 'CallGenome'
[2026-06-05T14:00:16.311418Z] [nf-554f8600c22dc2a63b1353d2cc491287-6fc3f-mvvdr] [613_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_004_chr5_0009] Task initiated on local node
[2026-06-05T14:00:16.372719Z] [nf-554f8600c22dc2a63b1353d2cc491287-6fc3f-mvvdr] [613_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0009' launched from sub-workflow 'CallGenome'
[2026-06-05T14:00:16.373469Z] [nf-554f8600c22dc2a63b1353d2cc491287-6fc3f-mvvdr] [613_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0002' from sub-workflow 'CallGenome'
[2026-06-05T14:00:16.377161Z] [nf-554f8600c22dc2a63b1353d2cc491287-6fc3f-mvvdr] [613_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_003_chr4_0002] Task initiated on local node
[2026-06-05T14:00:16.437965Z] [nf-554f8600c22dc2a63b1353d2cc491287-6fc3f-mvvdr] [613_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0010' launched from sub-workflow 'CallGenome'
[2026-06-05T14:00:16.438060Z] [nf-554f8600c22dc2a63b1353d2cc491287-6fc3f-mvvdr] [613_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0002' launched from sub-workflow 'CallGenome'
[2026-06-05T14:00:16.438762Z] [nf-554f8600c22dc2a63b1353d2cc491287-6fc3f-mvvdr] [613_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0004' from sub-workflow 'CallGenome'
[2026-06-05T14:00:16.439209Z] [nf-554f8600c22dc2a63b1353d2cc491287-6fc3f-mvvdr] [613_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0010' from sub-workflow 'CallGenome'
[2026-06-05T14:00:16.442562Z] [nf-554f8600c22dc2a63b1353d2cc491287-6fc3f-mvvdr] [613_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_003_chr4_0004] Task initiated on local node
[2026-06-05T14:00:16.443564Z] [nf-554f8600c22dc2a63b1353d2cc491287-6fc3f-mvvdr] [613_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_003_chr4_0010] Task initiated on local node
[2026-06-05T14:00:16.471978Z] [nf-554f8600c22dc2a63b1353d2cc491287-6fc3f-mvvdr] [613_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0010' launched from sub-workflow 'CallGenome'
[2026-06-05T14:00:16.472534Z] [nf-554f8600c22dc2a63b1353d2cc491287-6fc3f-mvvdr] [613_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0008' from sub-workflow 'CallGenome'
[2026-06-05T14:00:16.475261Z] [nf-554f8600c22dc2a63b1353d2cc491287-6fc3f-mvvdr] [613_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_003_chr4_0008] Task initiated on local node
[2026-06-05T14:00:16.504713Z] [nf-554f8600c22dc2a63b1353d2cc491287-6fc3f-mvvdr] [613_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0008' launched from sub-workflow 'CallGenome'
[2026-06-05T14:00:16.505233Z] [nf-554f8600c22dc2a63b1353d2cc491287-6fc3f-mvvdr] [613_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0008' from sub-workflow 'CallGenome'
[2026-06-05T14:00:16.507931Z] [nf-554f8600c22dc2a63b1353d2cc491287-6fc3f-mvvdr] [613_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_005_chr6_0008] Task initiated on local node
[2026-06-05T14:00:16.521494Z] [nf-554f8600c22dc2a63b1353d2cc491287-6fc3f-mvvdr] [613_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0011' launched from sub-workflow 'CallGenome'
[2026-06-05T14:00:16.521976Z] [nf-554f8600c22dc2a63b1353d2cc491287-6fc3f-mvvdr] [613_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0011' from sub-workflow 'CallGenome'
[2026-06-05T14:00:16.524742Z] [nf-554f8600c22dc2a63b1353d2cc491287-6fc3f-mvvdr] [613_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_005_chr6_0011] Task initiated on local node
[2026-06-05T14:00:16.554115Z] [nf-554f8600c22dc2a63b1353d2cc491287-6fc3f-mvvdr] [613_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0011' launched from sub-workflow 'CallGenome'
[2026-06-05T14:00:16.554630Z] [nf-554f8600c22dc2a63b1353d2cc491287-6fc3f-mvvdr] [613_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0012' from sub-workflow 'CallGenome'
[2026-06-05T14:00:16.557249Z] [nf-554f8600c22dc2a63b1353d2cc491287-6fc3f-mvvdr] [613_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_004_chr5_0012] Task initiated on local node
[2026-06-05T14:00:16.586603Z] [nf-554f8600c22dc2a63b1353d2cc491287-6fc3f-mvvdr] [613_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0012' launched from sub-workflow 'CallGenome'
[2026-06-05T14:00:16.618768Z] [nf-554f8600c22dc2a63b1353d2cc491287-6fc3f-mvvdr] [613_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0001' launched from sub-workflow 'CallGenome'
[2026-06-05T14:00:16.619260Z] [nf-554f8600c22dc2a63b1353d2cc491287-6fc3f-mvvdr] [613_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0001' from sub-workflow 'CallGenome'
[2026-06-05T14:00:16.622500Z] [nf-554f8600c22dc2a63b1353d2cc491287-6fc3f-mvvdr] [613_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_004_chr5_0001] Task initiated on local node
[2026-06-05T14:00:16.683891Z] [nf-554f8600c22dc2a63b1353d2cc491287-6fc3f-mvvdr] [613_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0001' launched from sub-workflow 'CallGenome'
[2026-06-05T14:00:16.683990Z] [nf-554f8600c22dc2a63b1353d2cc491287-6fc3f-mvvdr] [613_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0005' launched from sub-workflow 'CallGenome'
[2026-06-05T14:00:16.684512Z] [nf-554f8600c22dc2a63b1353d2cc491287-6fc3f-mvvdr] [613_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0005' from sub-workflow 'CallGenome'
[2026-06-05T14:00:16.687247Z] [nf-554f8600c22dc2a63b1353d2cc491287-6fc3f-mvvdr] [613_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_005_chr6_0005] Task initiated on local node
[2026-06-05T14:00:16.716551Z] [nf-554f8600c22dc2a63b1353d2cc491287-6fc3f-mvvdr] [613_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0005' launched from sub-workflow 'CallGenome'
[2026-06-05T14:00:16.880856Z] [nf-554f8600c22dc2a63b1353d2cc491287-6fc3f-mvvdr] [613_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0007' launched from sub-workflow 'CallGenome'
[2026-06-05T14:00:16.881411Z] [nf-554f8600c22dc2a63b1353d2cc491287-6fc3f-mvvdr] [613_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0007' from sub-workflow 'CallGenome'
[2026-06-05T14:00:16.884408Z] [nf-554f8600c22dc2a63b1353d2cc491287-6fc3f-mvvdr] [613_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_004_chr5_0007] Task initiated on local node
[2026-06-05T14:00:16.913510Z] [nf-554f8600c22dc2a63b1353d2cc491287-6fc3f-mvvdr] [613_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0007' launched from sub-workflow 'CallGenome'
[2026-06-05T14:00:17.178200Z] [nf-554f8600c22dc2a63b1353d2cc491287-6fc3f-mvvdr] [613_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0008' launched from sub-workflow 'CallGenome'
[2026-06-05T14:00:17.178753Z] [nf-554f8600c22dc2a63b1353d2cc491287-6fc3f-mvvdr] [613_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0008' from sub-workflow 'CallGenome'
[2026-06-05T14:00:17.181814Z] [nf-554f8600c22dc2a63b1353d2cc491287-6fc3f-mvvdr] [613_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_005_chr6_0008] Task initiated on local node
[2026-06-05T14:00:17.210974Z] [nf-554f8600c22dc2a63b1353d2cc491287-6fc3f-mvvdr] [613_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0008' launched from sub-workflow 'CallGenome'
[2026-06-05T14:00:17.375248Z] [nf-554f8600c22dc2a63b1353d2cc491287-6fc3f-mvvdr] [613_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0003' launched from sub-workflow 'CallGenome'
[2026-06-05T14:00:17.375698Z] [nf-554f8600c22dc2a63b1353d2cc491287-6fc3f-mvvdr] [613_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0003' from sub-workflow 'CallGenome'
[2026-06-05T14:00:17.378676Z] [nf-554f8600c22dc2a63b1353d2cc491287-6fc3f-mvvdr] [613_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_005_chr6_0003] Task initiated on local node
[2026-06-05T14:00:17.439975Z] [nf-554f8600c22dc2a63b1353d2cc491287-6fc3f-mvvdr] [613_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0003' launched from sub-workflow 'CallGenome'
[2026-06-05T14:00:17.504192Z] [nf-554f8600c22dc2a63b1353d2cc491287-6fc3f-mvvdr] [613_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0004' launched from sub-workflow 'CallGenome'
[2026-06-05T14:00:17.504263Z] [nf-554f8600c22dc2a63b1353d2cc491287-6fc3f-mvvdr] [613_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0006' launched from sub-workflow 'CallGenome'
[2026-06-05T14:00:17.504685Z] [nf-554f8600c22dc2a63b1353d2cc491287-6fc3f-mvvdr] [613_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0004' from sub-workflow 'CallGenome'
[2026-06-05T14:00:17.504981Z] [nf-554f8600c22dc2a63b1353d2cc491287-6fc3f-mvvdr] [613_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0006' from sub-workflow 'CallGenome'
[2026-06-05T14:00:17.508733Z] [nf-554f8600c22dc2a63b1353d2cc491287-6fc3f-mvvdr] [613_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_003_chr4_0004] Task initiated on local node
[2026-06-05T14:00:17.510122Z] [nf-554f8600c22dc2a63b1353d2cc491287-6fc3f-mvvdr] [613_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_004_chr5_0006] Task initiated on local node
[2026-06-05T14:00:17.569563Z] [nf-554f8600c22dc2a63b1353d2cc491287-6fc3f-mvvdr] [613_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0006' launched from sub-workflow 'CallGenome'
[2026-06-05T14:00:17.569641Z] [nf-554f8600c22dc2a63b1353d2cc491287-6fc3f-mvvdr] [613_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0004' launched from sub-workflow 'CallGenome'
[2026-06-05T14:00:17.569903Z] [nf-554f8600c22dc2a63b1353d2cc491287-6fc3f-mvvdr] [613_1] [TaskManager] Completed command task: 'CallGenome+completedAllGenomeSegments' launched from sub-workflow 'CallGenome'
[2026-06-05T14:00:17.570039Z] [nf-554f8600c22dc2a63b1353d2cc491287-6fc3f-mvvdr] [613_1] [TaskManager] Launching command task: 'CallGenome+SNV_concat_vcf' from sub-workflow 'CallGenome'
[2026-06-05T14:00:17.570476Z] [nf-554f8600c22dc2a63b1353d2cc491287-6fc3f-mvvdr] [613_1] [TaskManager] Launching command task: 'CallGenome+mergeRunStats' from sub-workflow 'CallGenome'
[2026-06-05T14:00:17.571021Z] [nf-554f8600c22dc2a63b1353d2cc491287-6fc3f-mvvdr] [613_1] [TaskManager] Launching command task: 'CallGenome+Indel_concat_vcf' from sub-workflow 'CallGenome'
[2026-06-05T14:00:17.574791Z] [nf-554f8600c22dc2a63b1353d2cc491287-6fc3f-mvvdr] [613_1] [TaskRunner:CallGenome+SNV_concat_vcf] Task initiated on local node
[2026-06-05T14:00:17.576273Z] [nf-554f8600c22dc2a63b1353d2cc491287-6fc3f-mvvdr] [613_1] [TaskRunner:CallGenome+mergeRunStats] Task initiated on local node
[2026-06-05T14:00:17.577462Z] [nf-554f8600c22dc2a63b1353d2cc491287-6fc3f-mvvdr] [613_1] [TaskRunner:CallGenome+Indel_concat_vcf] Task initiated on local node
[2026-06-05T14:00:17.603648Z] [nf-554f8600c22dc2a63b1353d2cc491287-6fc3f-mvvdr] [613_1] [TaskManager] Completed command task: 'CallGenome+SNV_concat_vcf' launched from sub-workflow 'CallGenome'
[2026-06-05T14:00:17.603710Z] [nf-554f8600c22dc2a63b1353d2cc491287-6fc3f-mvvdr] [613_1] [TaskManager] Completed command task: 'CallGenome+Indel_concat_vcf' launched from sub-workflow 'CallGenome'
[2026-06-05T14:00:17.603734Z] [nf-554f8600c22dc2a63b1353d2cc491287-6fc3f-mvvdr] [613_1] [TaskManager] Completed command task: 'CallGenome+mergeRunStats' launched from sub-workflow 'CallGenome'
[2026-06-05T14:00:17.603908Z] [nf-554f8600c22dc2a63b1353d2cc491287-6fc3f-mvvdr] [613_1] [TaskManager] Launching command task: 'CallGenome+SNV_index_vcf' from sub-workflow 'CallGenome'
[2026-06-05T14:00:17.604173Z] [nf-554f8600c22dc2a63b1353d2cc491287-6fc3f-mvvdr] [613_1] [TaskManager] Launching command task: 'CallGenome+Indel_index_vcf' from sub-workflow 'CallGenome'
[2026-06-05T14:00:17.606631Z] [nf-554f8600c22dc2a63b1353d2cc491287-6fc3f-mvvdr] [613_1] [TaskRunner:CallGenome+SNV_index_vcf] Task initiated on local node
[2026-06-05T14:00:17.607487Z] [nf-554f8600c22dc2a63b1353d2cc491287-6fc3f-mvvdr] [613_1] [TaskRunner:CallGenome+Indel_index_vcf] Task initiated on local node
[2026-06-05T14:00:17.636182Z] [nf-554f8600c22dc2a63b1353d2cc491287-6fc3f-mvvdr] [613_1] [TaskManager] Completed command task: 'CallGenome+SNV_index_vcf' launched from sub-workflow 'CallGenome'
[2026-06-05T14:00:17.636247Z] [nf-554f8600c22dc2a63b1353d2cc491287-6fc3f-mvvdr] [613_1] [TaskManager] Completed command task: 'CallGenome+Indel_index_vcf' launched from sub-workflow 'CallGenome'
[2026-06-05T14:00:17.636413Z] [nf-554f8600c22dc2a63b1353d2cc491287-6fc3f-mvvdr] [613_1] [TaskManager] Launching command task: 'CallGenome+removeTmpDir' from sub-workflow 'CallGenome'
[2026-06-05T14:00:17.638700Z] [nf-554f8600c22dc2a63b1353d2cc491287-6fc3f-mvvdr] [613_1] [TaskRunner:CallGenome+removeTmpDir] Task initiated on local node
[2026-06-05T14:00:17.668347Z] [nf-554f8600c22dc2a63b1353d2cc491287-6fc3f-mvvdr] [613_1] [TaskManager] Completed command task: 'CallGenome+removeTmpDir' launched from sub-workflow 'CallGenome'
[2026-06-05T14:00:19.035856Z] [nf-554f8600c22dc2a63b1353d2cc491287-6fc3f-mvvdr] [613_1] [TaskManager] Completed sub-workflow task: 'CallGenome' launched from master workflow
[2026-06-05T14:00:27.348997Z] [nf-554f8600c22dc2a63b1353d2cc491287-6fc3f-mvvdr] [613_1] [WorkflowRunner] Strelka somatic workflow successfully completed.
[2026-06-05T14:00:27.348997Z] [nf-554f8600c22dc2a63b1353d2cc491287-6fc3f-mvvdr] [613_1] [WorkflowRunner] 
[2026-06-05T14:00:27.348997Z] [nf-554f8600c22dc2a63b1353d2cc491287-6fc3f-mvvdr] [613_1] [WorkflowRunner] 	workflow version: 2.9.10
[2026-06-05T14:00:27.349073Z] [nf-554f8600c22dc2a63b1353d2cc491287-6fc3f-mvvdr] [613_1] [WorkflowRunner] 
[2026-06-05T14:00:27.349082Z] [nf-554f8600c22dc2a63b1353d2cc491287-6fc3f-mvvdr] [613_1] [WorkflowRunner] Workflow successfully completed all tasks
[2026-06-05T14:00:27.349090Z] [nf-554f8600c22dc2a63b1353d2cc491287-6fc3f-mvvdr] [613_1] [WorkflowRunner] Elapsed time for full workflow: 18 sec