cmdline: /opt/conda/share/sentieon-202308.03-3/libexec/driver -r Homo_sapiens_assembly38.fasta -t 12 --interval chr8_93795409-93795507.bed.gz -i HCC1395_BL.recalibrated.bam --algo Haplotyper -d dbsnp_146.hg38.vcf.gz --emit_mode variant germline_control_1.haplotyper.chr8_93795409-93795507.bed.unfiltered.vcf.gz
This software is licensed to bgold@natera.com by Sentieon Inc.
progress 5% @chr8:144254813, elapsed 0.1s, est remaining 1.2s, peak mem 72MB, user 0.0s, sys 0.2s, output queue size 1742
progress 10% @chr9:36963912, elapsed 0.1s, est remaining 1.1s, peak mem 75MB, user 0.0s, sys 0.4s, output queue size 3961
progress 15% @chr9:96758778, elapsed 0.2s, est remaining 1.1s, peak mem 84MB, user 0.1s, sys 0.5s, output queue size 5739
progress 20% @chr9:128933782, elapsed 0.3s, est remaining 1.1s, peak mem 90MB, user 0.1s, sys 0.6s, output queue size 412
progress 25% @chr10:14908408, elapsed 0.3s, est remaining 1.0s, peak mem 96MB, user 0.2s, sys 0.9s, output queue size 3163
progress 30% @chr10:69202867, elapsed 0.4s, est remaining 0.9s, peak mem 102MB, user 0.2s, sys 1.1s, output queue size 5554
progress 35% @chr10:100506321, elapsed 0.5s, est remaining 0.9s, peak mem 117MB, user 0.3s, sys 1.3s, output queue size 8208
progress 40% @chr11:372662, elapsed 0.5s, est remaining 0.8s, peak mem 123MB, user 0.3s, sys 1.4s, output queue size 10793
progress 45% @chr11:17988597, elapsed 0.6s, est remaining 0.7s, peak mem 132MB, user 0.4s, sys 1.6s, output queue size 12946
progress 50% @chr11:61429182, elapsed 0.7s, est remaining 0.7s, peak mem 132MB, user 0.4s, sys 1.7s, output queue size 15314
progress 55% @chr11:73141857, elapsed 0.7s, est remaining 0.6s, peak mem 147MB, user 0.4s, sys 1.9s, output queue size 17985
progress 60% @chr11:114530175, elapsed 0.8s, est remaining 0.6s, peak mem 153MB, user 0.5s, sys 2.1s, output queue size 20279
progress 65% @chr12:6492271, elapsed 0.9s, est remaining 0.5s, peak mem 156MB, user 0.5s, sys 2.3s, output queue size 22638
progress 70% @chr12:31672304, elapsed 1.0s, est remaining 0.4s, peak mem 159MB, user 0.6s, sys 2.4s, output queue size 24721
progress 75% @chr12:55971044, elapsed 1.1s, est remaining 0.4s, peak mem 162MB, user 0.6s, sys 2.7s, output queue size 27201
progress 80% @chr12:99984104, elapsed 1.2s, est remaining 0.3s, peak mem 165MB, user 0.7s, sys 3.2s, output queue size 29933
progress 85% @chr12:123756815, elapsed 1.2s, est remaining 0.2s, peak mem 186MB, user 0.8s, sys 3.6s, output queue size 32787
progress 90% @chr13:48465203, elapsed 1.3s, est remaining 0.1s, peak mem 195MB, user 0.8s, sys 4.0s, output queue size 35156
progress 95% @chr14:22610859, elapsed 1.4s, est remaining 0.1s, peak mem 198MB, user 0.9s, sys 4.2s, output queue size 37415
progress 100% @chr14:64120927, elapsed 1.4s, est remaining 0.0s, peak mem 210MB, user 0.9s, sys 4.5s, output queue size 39963
sw version: sentieon-genomics-202308.03
os version: Linux 6.12.88
cpu vendor: GenuineIntel
 signature: 000a06d1
  features: bfebfbff 7ffefbff
  extended: f3bfb7ef fb417ffe
  amd bits: 2c100800 00000121
     brand: Intel(R) Xeon(R) 6975P-C
threads: 12 max 384
algo: Haplotyper
license: sentieon:Haplotyper=12
input file size: 71692764
output file size: 22308
reads: 1001089
contig: 48642 intervals 9000010 bases
active: 98785 calls 0.000 user 0.008 sys 0.015 real
advance: 50143 calls 0.009 user 0.014 sys 0.020 real
calc: 98785 calls 0.003 user 0.000 sys 0.015 real
done: 1 calls 0.001 user 0.000 sys 0.002 real
execute: 1 calls 0.000 user 0.008 sys 2.439 real
fetch: 98785 calls 0.005 user 0.000 sys 0.016 real
fetch_ref: 98785 calls 0.171 user 0.122 sys 0.385 real
idle: 51 calls 0.006 user 0.037 sys 24.549 real
init: 1 calls 0.023 user 0.021 sys 0.045 real
region: 98785 calls 0.007 user 0.006 sys 0.017 real
tracker: 98785 calls 0.017 user 0.017 sys 0.087 real
overall: 223481856 mem 1.447 user 6.348 sys 3.588 real
ls: cannot access '*.g.vcf.gz': No such file or directory
ls: cannot access '*.g.vcf.gz.tbi': No such file or directory