File Info

Filename
.command.err
Full Path
s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/1a/c6e082909a2e188a13c692d5620e08/.command.err
Size
1.3 KB
Attempt
mkdir -p failed for path /.config/matplotlib: [Errno 13] Permission denied: '/.config'
Matplotlib created a temporary cache directory at /tmp/matplotlib-wz57044t because there was an issue with the default path (/.config/matplotlib); it is highly recommended to set the MPLCONFIGDIR environment variable to a writable directory, in particular to speed up the import of Matplotlib and to better support multiprocessing.
2026-06-05 14:05:32,357 - cnv_pipe.batch.jax_config - INFO - Setting JAX backend to 'cpu'
2026-06-05 14:05:33,138 - cnv_pipe.batch.run_model - INFO - JAX devices = [CpuDevice(id=0)]
2026-06-05 14:05:33,302 - cnv_pipe.batch.run_model - INFO - Loading counts from counts_1.parquet
2026-06-05 14:05:34,311 - cnv_pipe.batch.run_model - INFO - Loaded data with 4 samples
2026-06-05 14:05:34,506 - cnv_pipe.batch.run_model - INFO - Processing cluster 1100 with 191 probes
2026-06-05 14:05:34,882 - cnv_pipe.batch.run_model.cluster1100 - INFO - Child process started for cluster 1100 with 191 probes
2026-06-05 14:06:32,605 - cnv_pipe.batch.run_model.cluster1100 - INFO - Child process finished cluster 1100. Wrote cluster_1100_samples.csv and cluster_1100_params.csv
2026-06-05 14:06:32,607 - cnv_pipe.batch.run_model - INFO - Cluster 1100 finished in 58.10 seconds. Status: SUCCESS