Downloading: s3://natera-platform-sandbox/pipeline-resources/ngi-igenomes/igenomes/Homo_sapiens/GATK/GRCh38/Sequence/WholeGenomeFasta/Homo_sapiens_assembly38.fasta
  Downloading: s3://natera-platform-sandbox/pipeline-resources/AIH/dna_daq/stored-normals/reference-NA12878-downsampled-500k.bam
  Downloading: s3://natera-platform-sandbox/pipeline-resources/ngi-igenomes/igenomes/Homo_sapiens/GATK/GRCh38/Annotation/intervals/altera_padded_intervals/scatter/chr9_110971973-110972217.bed.gz
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/bf/ff7bc3316f9371deb142c3ba4d5b70/HCC1395_tumor.recalibrated.bam.bai
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/c4/a39644ff3c5863592f28adc12b89ae/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/bf/ff7bc3316f9371deb142c3ba4d5b70/HCC1395_tumor.recalibrated.bam
  Downloading: s3://natera-platform-sandbox/pipeline-resources/ngi-igenomes/igenomes/Homo_sapiens/GATK/GRCh38/Sequence/WholeGenomeFasta/Homo_sapiens_assembly38.fasta.fai
  Downloading: s3://natera-platform-sandbox/pipeline-resources/AIH/dna_daq/stored-normals/reference-NA12878-downsampled-500k.bam.bai
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/c4/a39644ff3c5863592f28adc12b89ae/.command.run
  Downloading: s3://natera-platform-sandbox/pipeline-resources/ngi-igenomes/igenomes/Homo_sapiens/GATK/GRCh38/Annotation/intervals/altera_padded_intervals/scatter/chr9_110971973-110972217.bed.gz.tbi
==> STAGING COMPLETE (10 inputs)


Successfully created workflow run script.
To execute the workflow, run the following script and set appropriate options:

/var/tmp/strelka/runWorkflow.py
[2026-06-05T13:59:50.731675Z] [nf-c4a39644ff3c5863592f28adc12b89ae-64486-fqx5t] [618_1] [WorkflowRunner] Initiating pyFlow run
[2026-06-05T13:59:50.733495Z] [nf-c4a39644ff3c5863592f28adc12b89ae-64486-fqx5t] [618_1] [WorkflowRunner] pyFlowClientWorkflowClass: StrelkaSomaticWorkflow
[2026-06-05T13:59:50.733517Z] [nf-c4a39644ff3c5863592f28adc12b89ae-64486-fqx5t] [618_1] [WorkflowRunner] pyFlowVersion: 1.1.20
[2026-06-05T13:59:50.733523Z] [nf-c4a39644ff3c5863592f28adc12b89ae-64486-fqx5t] [618_1] [WorkflowRunner] pythonVersion: 2.7.15.final.0
[2026-06-05T13:59:50.733527Z] [nf-c4a39644ff3c5863592f28adc12b89ae-64486-fqx5t] [618_1] [WorkflowRunner] WorkingDir: '/tmp/nxf.XXXXX5BjYN'
[2026-06-05T13:59:50.733531Z] [nf-c4a39644ff3c5863592f28adc12b89ae-64486-fqx5t] [618_1] [WorkflowRunner] ProcessCmdLine: '/var/tmp/strelka/runWorkflow.py -m local -j 8'
[2026-06-05T13:59:50.733536Z] [nf-c4a39644ff3c5863592f28adc12b89ae-64486-fqx5t] [618_1] [WorkflowRunner] [RunParameters] mode: local
[2026-06-05T13:59:50.733540Z] [nf-c4a39644ff3c5863592f28adc12b89ae-64486-fqx5t] [618_1] [WorkflowRunner] [RunParameters] nCores: 8
[2026-06-05T13:59:50.733544Z] [nf-c4a39644ff3c5863592f28adc12b89ae-64486-fqx5t] [618_1] [WorkflowRunner] [RunParameters] memMb: 1547931
[2026-06-05T13:59:50.733548Z] [nf-c4a39644ff3c5863592f28adc12b89ae-64486-fqx5t] [618_1] [WorkflowRunner] [RunParameters] dataDir: /var/tmp/strelka/workspace/pyflow.data
[2026-06-05T13:59:50.733552Z] [nf-c4a39644ff3c5863592f28adc12b89ae-64486-fqx5t] [618_1] [WorkflowRunner] [RunParameters] isDryRun: False
[2026-06-05T13:59:50.733555Z] [nf-c4a39644ff3c5863592f28adc12b89ae-64486-fqx5t] [618_1] [WorkflowRunner] [RunParameters] isContinue: False
[2026-06-05T13:59:50.733559Z] [nf-c4a39644ff3c5863592f28adc12b89ae-64486-fqx5t] [618_1] [WorkflowRunner] [RunParameters] isForceContinue: True
[2026-06-05T13:59:50.733562Z] [nf-c4a39644ff3c5863592f28adc12b89ae-64486-fqx5t] [618_1] [WorkflowRunner] [RunParameters] mailTo: ''
[2026-06-05T13:59:50.734259Z] [nf-c4a39644ff3c5863592f28adc12b89ae-64486-fqx5t] [618_1] [TaskRunner:masterWorkflow] Starting task specification for master workflow
[2026-06-05T13:59:50.734332Z] [nf-c4a39644ff3c5863592f28adc12b89ae-64486-fqx5t] [618_1] [StrelkaSomaticWorkflow] Initiating Strelka somatic workflow version: 2.9.10
[2026-06-05T13:59:50.741511Z] [nf-c4a39644ff3c5863592f28adc12b89ae-64486-fqx5t] [618_1] [WorkflowRunner] Adding sub-workflow task 'CallGenome' to master workflow
[2026-06-05T13:59:50.742252Z] [nf-c4a39644ff3c5863592f28adc12b89ae-64486-fqx5t] [618_1] [TaskManager] Launching sub-workflow task: 'CallGenome' from master workflow
[2026-06-05T13:59:50.742624Z] [nf-c4a39644ff3c5863592f28adc12b89ae-64486-fqx5t] [618_1] [TaskRunner:masterWorkflow] Finished task specification for master workflow
[2026-06-05T13:59:50.743082Z] [nf-c4a39644ff3c5863592f28adc12b89ae-64486-fqx5t] [618_1] [TaskRunner:CallGenome] Starting task specification for sub-workflow
[2026-06-05T13:59:50.743710Z] [nf-c4a39644ff3c5863592f28adc12b89ae-64486-fqx5t] [618_1] [WorkflowRunner] Adding command task 'CallGenome+makeTmpDir' to sub-workflow 'CallGenome'
[2026-06-05T13:59:50.744466Z] [nf-c4a39644ff3c5863592f28adc12b89ae-64486-fqx5t] [618_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_008_chr9_0000' to sub-workflow 'CallGenome'
[2026-06-05T13:59:50.744567Z] [nf-c4a39644ff3c5863592f28adc12b89ae-64486-fqx5t] [618_1] [WorkflowRunner] Adding command task 'CallGenome+fixVcfHeader_chromId_008_chr9_0000' to sub-workflow 'CallGenome'
[2026-06-05T13:59:50.744652Z] [nf-c4a39644ff3c5863592f28adc12b89ae-64486-fqx5t] [618_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_008_chr9_0000' to sub-workflow 'CallGenome'
[2026-06-05T13:59:50.744919Z] [nf-c4a39644ff3c5863592f28adc12b89ae-64486-fqx5t] [618_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_008_chr9_0001' to sub-workflow 'CallGenome'
[2026-06-05T13:59:50.745391Z] [nf-c4a39644ff3c5863592f28adc12b89ae-64486-fqx5t] [618_1] [TaskManager] Launching command task: 'CallGenome+makeTmpDir' from sub-workflow 'CallGenome'
[2026-06-05T13:59:50.745999Z] [nf-c4a39644ff3c5863592f28adc12b89ae-64486-fqx5t] [618_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_008_chr9_0001' to sub-workflow 'CallGenome'
[2026-06-05T13:59:50.746409Z] [nf-c4a39644ff3c5863592f28adc12b89ae-64486-fqx5t] [618_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_008_chr9_0002' to sub-workflow 'CallGenome'
[2026-06-05T13:59:50.747875Z] [nf-c4a39644ff3c5863592f28adc12b89ae-64486-fqx5t] [618_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_008_chr9_0002' to sub-workflow 'CallGenome'
[2026-06-05T13:59:50.748412Z] [nf-c4a39644ff3c5863592f28adc12b89ae-64486-fqx5t] [618_1] [TaskRunner:CallGenome+makeTmpDir] Task initiated on local node
[2026-06-05T13:59:50.748698Z] [nf-c4a39644ff3c5863592f28adc12b89ae-64486-fqx5t] [618_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_008_chr9_0003' to sub-workflow 'CallGenome'
[2026-06-05T13:59:50.748896Z] [nf-c4a39644ff3c5863592f28adc12b89ae-64486-fqx5t] [618_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_008_chr9_0003' to sub-workflow 'CallGenome'
[2026-06-05T13:59:50.749023Z] [nf-c4a39644ff3c5863592f28adc12b89ae-64486-fqx5t] [618_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_008_chr9_0004' to sub-workflow 'CallGenome'
[2026-06-05T13:59:50.749087Z] [nf-c4a39644ff3c5863592f28adc12b89ae-64486-fqx5t] [618_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_008_chr9_0004' to sub-workflow 'CallGenome'
[2026-06-05T13:59:50.749198Z] [nf-c4a39644ff3c5863592f28adc12b89ae-64486-fqx5t] [618_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_008_chr9_0005' to sub-workflow 'CallGenome'
[2026-06-05T13:59:50.749262Z] [nf-c4a39644ff3c5863592f28adc12b89ae-64486-fqx5t] [618_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_008_chr9_0005' to sub-workflow 'CallGenome'
[2026-06-05T13:59:50.749372Z] [nf-c4a39644ff3c5863592f28adc12b89ae-64486-fqx5t] [618_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_008_chr9_0006' to sub-workflow 'CallGenome'
[2026-06-05T13:59:50.749438Z] [nf-c4a39644ff3c5863592f28adc12b89ae-64486-fqx5t] [618_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_008_chr9_0006' to sub-workflow 'CallGenome'
[2026-06-05T13:59:50.749545Z] [nf-c4a39644ff3c5863592f28adc12b89ae-64486-fqx5t] [618_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_008_chr9_0007' to sub-workflow 'CallGenome'
[2026-06-05T13:59:50.749607Z] [nf-c4a39644ff3c5863592f28adc12b89ae-64486-fqx5t] [618_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_008_chr9_0007' to sub-workflow 'CallGenome'
[2026-06-05T13:59:50.749793Z] [nf-c4a39644ff3c5863592f28adc12b89ae-64486-fqx5t] [618_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_008_chr9_0008' to sub-workflow 'CallGenome'
[2026-06-05T13:59:50.749868Z] [nf-c4a39644ff3c5863592f28adc12b89ae-64486-fqx5t] [618_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_008_chr9_0008' to sub-workflow 'CallGenome'
[2026-06-05T13:59:50.750037Z] [nf-c4a39644ff3c5863592f28adc12b89ae-64486-fqx5t] [618_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_008_chr9_0009' to sub-workflow 'CallGenome'
[2026-06-05T13:59:50.750335Z] [nf-c4a39644ff3c5863592f28adc12b89ae-64486-fqx5t] [618_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_008_chr9_0009' to sub-workflow 'CallGenome'
[2026-06-05T13:59:50.750448Z] [nf-c4a39644ff3c5863592f28adc12b89ae-64486-fqx5t] [618_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_008_chr9_0010' to sub-workflow 'CallGenome'
[2026-06-05T13:59:50.750511Z] [nf-c4a39644ff3c5863592f28adc12b89ae-64486-fqx5t] [618_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_008_chr9_0010' to sub-workflow 'CallGenome'
[2026-06-05T13:59:50.750982Z] [nf-c4a39644ff3c5863592f28adc12b89ae-64486-fqx5t] [618_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_008_chr9_0011' to sub-workflow 'CallGenome'
[2026-06-05T13:59:50.751053Z] [nf-c4a39644ff3c5863592f28adc12b89ae-64486-fqx5t] [618_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_008_chr9_0011' to sub-workflow 'CallGenome'
[2026-06-05T13:59:50.751164Z] [nf-c4a39644ff3c5863592f28adc12b89ae-64486-fqx5t] [618_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_022_chrX_0000' to sub-workflow 'CallGenome'
[2026-06-05T13:59:50.751226Z] [nf-c4a39644ff3c5863592f28adc12b89ae-64486-fqx5t] [618_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_022_chrX_0000' to sub-workflow 'CallGenome'
[2026-06-05T13:59:50.751334Z] [nf-c4a39644ff3c5863592f28adc12b89ae-64486-fqx5t] [618_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_022_chrX_0001' to sub-workflow 'CallGenome'
[2026-06-05T13:59:50.751659Z] [nf-c4a39644ff3c5863592f28adc12b89ae-64486-fqx5t] [618_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_022_chrX_0001' to sub-workflow 'CallGenome'
[2026-06-05T13:59:50.751957Z] [nf-c4a39644ff3c5863592f28adc12b89ae-64486-fqx5t] [618_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_022_chrX_0002' to sub-workflow 'CallGenome'
[2026-06-05T13:59:50.752019Z] [nf-c4a39644ff3c5863592f28adc12b89ae-64486-fqx5t] [618_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_022_chrX_0002' to sub-workflow 'CallGenome'
[2026-06-05T13:59:50.752127Z] [nf-c4a39644ff3c5863592f28adc12b89ae-64486-fqx5t] [618_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_022_chrX_0003' to sub-workflow 'CallGenome'
[2026-06-05T13:59:50.752191Z] [nf-c4a39644ff3c5863592f28adc12b89ae-64486-fqx5t] [618_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_022_chrX_0003' to sub-workflow 'CallGenome'
[2026-06-05T13:59:50.752296Z] [nf-c4a39644ff3c5863592f28adc12b89ae-64486-fqx5t] [618_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_022_chrX_0004' to sub-workflow 'CallGenome'
[2026-06-05T13:59:50.752358Z] [nf-c4a39644ff3c5863592f28adc12b89ae-64486-fqx5t] [618_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_022_chrX_0004' to sub-workflow 'CallGenome'
[2026-06-05T13:59:50.752464Z] [nf-c4a39644ff3c5863592f28adc12b89ae-64486-fqx5t] [618_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_022_chrX_0005' to sub-workflow 'CallGenome'
[2026-06-05T13:59:50.752524Z] [nf-c4a39644ff3c5863592f28adc12b89ae-64486-fqx5t] [618_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_022_chrX_0005' to sub-workflow 'CallGenome'
[2026-06-05T13:59:50.752632Z] [nf-c4a39644ff3c5863592f28adc12b89ae-64486-fqx5t] [618_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_022_chrX_0006' to sub-workflow 'CallGenome'
[2026-06-05T13:59:50.752693Z] [nf-c4a39644ff3c5863592f28adc12b89ae-64486-fqx5t] [618_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_022_chrX_0006' to sub-workflow 'CallGenome'
[2026-06-05T13:59:50.752804Z] [nf-c4a39644ff3c5863592f28adc12b89ae-64486-fqx5t] [618_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_022_chrX_0007' to sub-workflow 'CallGenome'
[2026-06-05T13:59:50.752867Z] [nf-c4a39644ff3c5863592f28adc12b89ae-64486-fqx5t] [618_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_022_chrX_0007' to sub-workflow 'CallGenome'
[2026-06-05T13:59:50.753024Z] [nf-c4a39644ff3c5863592f28adc12b89ae-64486-fqx5t] [618_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_022_chrX_0008' to sub-workflow 'CallGenome'
[2026-06-05T13:59:50.753449Z] [nf-c4a39644ff3c5863592f28adc12b89ae-64486-fqx5t] [618_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_022_chrX_0008' to sub-workflow 'CallGenome'
[2026-06-05T13:59:50.753560Z] [nf-c4a39644ff3c5863592f28adc12b89ae-64486-fqx5t] [618_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_022_chrX_0009' to sub-workflow 'CallGenome'
[2026-06-05T13:59:50.753622Z] [nf-c4a39644ff3c5863592f28adc12b89ae-64486-fqx5t] [618_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_022_chrX_0009' to sub-workflow 'CallGenome'
[2026-06-05T13:59:50.753791Z] [nf-c4a39644ff3c5863592f28adc12b89ae-64486-fqx5t] [618_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_022_chrX_0010' to sub-workflow 'CallGenome'
[2026-06-05T13:59:50.753861Z] [nf-c4a39644ff3c5863592f28adc12b89ae-64486-fqx5t] [618_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_022_chrX_0010' to sub-workflow 'CallGenome'
[2026-06-05T13:59:50.753969Z] [nf-c4a39644ff3c5863592f28adc12b89ae-64486-fqx5t] [618_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_022_chrX_0011' to sub-workflow 'CallGenome'
[2026-06-05T13:59:50.754038Z] [nf-c4a39644ff3c5863592f28adc12b89ae-64486-fqx5t] [618_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_022_chrX_0011' to sub-workflow 'CallGenome'
[2026-06-05T13:59:50.754144Z] [nf-c4a39644ff3c5863592f28adc12b89ae-64486-fqx5t] [618_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_022_chrX_0012' to sub-workflow 'CallGenome'
[2026-06-05T13:59:50.754206Z] [nf-c4a39644ff3c5863592f28adc12b89ae-64486-fqx5t] [618_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_022_chrX_0012' to sub-workflow 'CallGenome'
[2026-06-05T13:59:50.754317Z] [nf-c4a39644ff3c5863592f28adc12b89ae-64486-fqx5t] [618_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_022_chrX_0013' to sub-workflow 'CallGenome'
[2026-06-05T13:59:50.754378Z] [nf-c4a39644ff3c5863592f28adc12b89ae-64486-fqx5t] [618_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_022_chrX_0013' to sub-workflow 'CallGenome'
[2026-06-05T13:59:50.754497Z] [nf-c4a39644ff3c5863592f28adc12b89ae-64486-fqx5t] [618_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_023_chrY_0000' to sub-workflow 'CallGenome'
[2026-06-05T13:59:50.754685Z] [nf-c4a39644ff3c5863592f28adc12b89ae-64486-fqx5t] [618_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_023_chrY_0000' to sub-workflow 'CallGenome'
[2026-06-05T13:59:50.755169Z] [nf-c4a39644ff3c5863592f28adc12b89ae-64486-fqx5t] [618_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_023_chrY_0001' to sub-workflow 'CallGenome'
[2026-06-05T13:59:50.755236Z] [nf-c4a39644ff3c5863592f28adc12b89ae-64486-fqx5t] [618_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_023_chrY_0001' to sub-workflow 'CallGenome'
[2026-06-05T13:59:50.755344Z] [nf-c4a39644ff3c5863592f28adc12b89ae-64486-fqx5t] [618_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_023_chrY_0002' to sub-workflow 'CallGenome'
[2026-06-05T13:59:50.755407Z] [nf-c4a39644ff3c5863592f28adc12b89ae-64486-fqx5t] [618_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_023_chrY_0002' to sub-workflow 'CallGenome'
[2026-06-05T13:59:50.755519Z] [nf-c4a39644ff3c5863592f28adc12b89ae-64486-fqx5t] [618_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_023_chrY_0003' to sub-workflow 'CallGenome'
[2026-06-05T13:59:50.755582Z] [nf-c4a39644ff3c5863592f28adc12b89ae-64486-fqx5t] [618_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_023_chrY_0003' to sub-workflow 'CallGenome'
[2026-06-05T13:59:50.769015Z] [nf-c4a39644ff3c5863592f28adc12b89ae-64486-fqx5t] [618_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_023_chrY_0004' to sub-workflow 'CallGenome'
[2026-06-05T13:59:50.769397Z] [nf-c4a39644ff3c5863592f28adc12b89ae-64486-fqx5t] [618_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_023_chrY_0004' to sub-workflow 'CallGenome'
[2026-06-05T13:59:50.769463Z] [nf-c4a39644ff3c5863592f28adc12b89ae-64486-fqx5t] [618_1] [WorkflowRunner] Adding command task 'CallGenome+completedAllGenomeSegments' to sub-workflow 'CallGenome'
[2026-06-05T13:59:50.769617Z] [nf-c4a39644ff3c5863592f28adc12b89ae-64486-fqx5t] [618_1] [WorkflowRunner] Adding command task 'CallGenome+SNV_concat_vcf' to sub-workflow 'CallGenome'
[2026-06-05T13:59:50.769689Z] [nf-c4a39644ff3c5863592f28adc12b89ae-64486-fqx5t] [618_1] [WorkflowRunner] Adding command task 'CallGenome+SNV_index_vcf' to sub-workflow 'CallGenome'
[2026-06-05T13:59:50.769771Z] [nf-c4a39644ff3c5863592f28adc12b89ae-64486-fqx5t] [618_1] [WorkflowRunner] Adding command task 'CallGenome+Indel_concat_vcf' to sub-workflow 'CallGenome'
[2026-06-05T13:59:50.769838Z] [nf-c4a39644ff3c5863592f28adc12b89ae-64486-fqx5t] [618_1] [WorkflowRunner] Adding command task 'CallGenome+Indel_index_vcf' to sub-workflow 'CallGenome'
[2026-06-05T13:59:50.769941Z] [nf-c4a39644ff3c5863592f28adc12b89ae-64486-fqx5t] [618_1] [WorkflowRunner] Adding command task 'CallGenome+mergeRunStats' to sub-workflow 'CallGenome'
[2026-06-05T13:59:50.770007Z] [nf-c4a39644ff3c5863592f28adc12b89ae-64486-fqx5t] [618_1] [WorkflowRunner] Adding command task 'CallGenome+removeTmpDir' to sub-workflow 'CallGenome'
[2026-06-05T13:59:50.770052Z] [nf-c4a39644ff3c5863592f28adc12b89ae-64486-fqx5t] [618_1] [TaskRunner:CallGenome] Finished task specification for sub-workflow
[2026-06-05T13:59:50.778189Z] [nf-c4a39644ff3c5863592f28adc12b89ae-64486-fqx5t] [618_1] [TaskManager] Completed command task: 'CallGenome+makeTmpDir' launched from sub-workflow 'CallGenome'
[2026-06-05T13:59:50.778752Z] [nf-c4a39644ff3c5863592f28adc12b89ae-64486-fqx5t] [618_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0012' from sub-workflow 'CallGenome'
[2026-06-05T13:59:50.780103Z] [nf-c4a39644ff3c5863592f28adc12b89ae-64486-fqx5t] [618_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0011' from sub-workflow 'CallGenome'
[2026-06-05T13:59:50.780691Z] [nf-c4a39644ff3c5863592f28adc12b89ae-64486-fqx5t] [618_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_023_chrY_0001' from sub-workflow 'CallGenome'
[2026-06-05T13:59:50.781223Z] [nf-c4a39644ff3c5863592f28adc12b89ae-64486-fqx5t] [618_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_023_chrY_0000' from sub-workflow 'CallGenome'
[2026-06-05T13:59:50.782130Z] [nf-c4a39644ff3c5863592f28adc12b89ae-64486-fqx5t] [618_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0013' from sub-workflow 'CallGenome'
[2026-06-05T13:59:50.782440Z] [nf-c4a39644ff3c5863592f28adc12b89ae-64486-fqx5t] [618_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0009' from sub-workflow 'CallGenome'
[2026-06-05T13:59:50.786349Z] [nf-c4a39644ff3c5863592f28adc12b89ae-64486-fqx5t] [618_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0007' from sub-workflow 'CallGenome'
[2026-06-05T13:59:50.786947Z] [nf-c4a39644ff3c5863592f28adc12b89ae-64486-fqx5t] [618_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_008_chr9_0011] Task initiated on local node
[2026-06-05T13:59:50.787593Z] [nf-c4a39644ff3c5863592f28adc12b89ae-64486-fqx5t] [618_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0001' from sub-workflow 'CallGenome'
[2026-06-05T13:59:50.796266Z] [nf-c4a39644ff3c5863592f28adc12b89ae-64486-fqx5t] [618_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_023_chrY_0001] Task initiated on local node
[2026-06-05T13:59:50.798063Z] [nf-c4a39644ff3c5863592f28adc12b89ae-64486-fqx5t] [618_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_022_chrX_0013] Task initiated on local node
[2026-06-05T13:59:50.798903Z] [nf-c4a39644ff3c5863592f28adc12b89ae-64486-fqx5t] [618_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_008_chr9_0009] Task initiated on local node
[2026-06-05T13:59:50.801005Z] [nf-c4a39644ff3c5863592f28adc12b89ae-64486-fqx5t] [618_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_023_chrY_0000] Task initiated on local node
[2026-06-05T13:59:50.801523Z] [nf-c4a39644ff3c5863592f28adc12b89ae-64486-fqx5t] [618_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_022_chrX_0001] Task initiated on local node
[2026-06-05T13:59:50.804647Z] [nf-c4a39644ff3c5863592f28adc12b89ae-64486-fqx5t] [618_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_022_chrX_0007] Task initiated on local node
[2026-06-05T13:59:51.356538Z] [nf-c4a39644ff3c5863592f28adc12b89ae-64486-fqx5t] [618_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_023_chrY_0001' launched from sub-workflow 'CallGenome'
[2026-06-05T13:59:51.357422Z] [nf-c4a39644ff3c5863592f28adc12b89ae-64486-fqx5t] [618_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_023_chrY_0001' from sub-workflow 'CallGenome'
[2026-06-05T13:59:51.360952Z] [nf-c4a39644ff3c5863592f28adc12b89ae-64486-fqx5t] [618_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_023_chrY_0001] Task initiated on local node
[2026-06-05T13:59:51.389595Z] [nf-c4a39644ff3c5863592f28adc12b89ae-64486-fqx5t] [618_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_023_chrY_0000' launched from sub-workflow 'CallGenome'
[2026-06-05T13:59:51.390419Z] [nf-c4a39644ff3c5863592f28adc12b89ae-64486-fqx5t] [618_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0008' from sub-workflow 'CallGenome'
[2026-06-05T13:59:51.393465Z] [nf-c4a39644ff3c5863592f28adc12b89ae-64486-fqx5t] [618_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_008_chr9_0008] Task initiated on local node
[2026-06-05T13:59:51.394426Z] [nf-c4a39644ff3c5863592f28adc12b89ae-64486-fqx5t] [618_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_023_chrY_0001' launched from sub-workflow 'CallGenome'
[2026-06-05T13:59:51.395180Z] [nf-c4a39644ff3c5863592f28adc12b89ae-64486-fqx5t] [618_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0009' from sub-workflow 'CallGenome'
[2026-06-05T13:59:51.398051Z] [nf-c4a39644ff3c5863592f28adc12b89ae-64486-fqx5t] [618_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_022_chrX_0009] Task initiated on local node
[2026-06-05T13:59:51.459483Z] [nf-c4a39644ff3c5863592f28adc12b89ae-64486-fqx5t] [618_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0008' launched from sub-workflow 'CallGenome'
[2026-06-05T13:59:51.460374Z] [nf-c4a39644ff3c5863592f28adc12b89ae-64486-fqx5t] [618_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0006' from sub-workflow 'CallGenome'
[2026-06-05T13:59:51.463993Z] [nf-c4a39644ff3c5863592f28adc12b89ae-64486-fqx5t] [618_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_008_chr9_0006] Task initiated on local node
[2026-06-05T13:59:51.574920Z] [nf-c4a39644ff3c5863592f28adc12b89ae-64486-fqx5t] [618_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0006' launched from sub-workflow 'CallGenome'
[2026-06-05T13:59:51.575762Z] [nf-c4a39644ff3c5863592f28adc12b89ae-64486-fqx5t] [618_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0004' from sub-workflow 'CallGenome'
[2026-06-05T13:59:51.579406Z] [nf-c4a39644ff3c5863592f28adc12b89ae-64486-fqx5t] [618_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_022_chrX_0004] Task initiated on local node
[2026-06-05T13:59:51.691387Z] [nf-c4a39644ff3c5863592f28adc12b89ae-64486-fqx5t] [618_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0007' launched from sub-workflow 'CallGenome'
[2026-06-05T13:59:51.692247Z] [nf-c4a39644ff3c5863592f28adc12b89ae-64486-fqx5t] [618_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0010' from sub-workflow 'CallGenome'
[2026-06-05T13:59:51.695541Z] [nf-c4a39644ff3c5863592f28adc12b89ae-64486-fqx5t] [618_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_022_chrX_0010] Task initiated on local node
[2026-06-05T13:59:52.157695Z] [nf-c4a39644ff3c5863592f28adc12b89ae-64486-fqx5t] [618_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0009' launched from sub-workflow 'CallGenome'
[2026-06-05T13:59:52.158489Z] [nf-c4a39644ff3c5863592f28adc12b89ae-64486-fqx5t] [618_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0005' from sub-workflow 'CallGenome'
[2026-06-05T13:59:52.162208Z] [nf-c4a39644ff3c5863592f28adc12b89ae-64486-fqx5t] [618_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_022_chrX_0005] Task initiated on local node
[2026-06-05T13:59:52.724632Z] [nf-c4a39644ff3c5863592f28adc12b89ae-64486-fqx5t] [618_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0013' launched from sub-workflow 'CallGenome'
[2026-06-05T13:59:52.725452Z] [nf-c4a39644ff3c5863592f28adc12b89ae-64486-fqx5t] [618_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0007' from sub-workflow 'CallGenome'
[2026-06-05T13:59:52.729167Z] [nf-c4a39644ff3c5863592f28adc12b89ae-64486-fqx5t] [618_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_022_chrX_0007] Task initiated on local node
[2026-06-05T13:59:52.789657Z] [nf-c4a39644ff3c5863592f28adc12b89ae-64486-fqx5t] [618_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0007' launched from sub-workflow 'CallGenome'
[2026-06-05T13:59:52.790300Z] [nf-c4a39644ff3c5863592f28adc12b89ae-64486-fqx5t] [618_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0009' from sub-workflow 'CallGenome'
[2026-06-05T13:59:52.793415Z] [nf-c4a39644ff3c5863592f28adc12b89ae-64486-fqx5t] [618_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_008_chr9_0009] Task initiated on local node
[2026-06-05T13:59:52.806114Z] [nf-c4a39644ff3c5863592f28adc12b89ae-64486-fqx5t] [618_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0005' launched from sub-workflow 'CallGenome'
[2026-06-05T13:59:52.806793Z] [nf-c4a39644ff3c5863592f28adc12b89ae-64486-fqx5t] [618_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0005' from sub-workflow 'CallGenome'
[2026-06-05T13:59:52.810064Z] [nf-c4a39644ff3c5863592f28adc12b89ae-64486-fqx5t] [618_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_022_chrX_0005] Task initiated on local node
[2026-06-05T13:59:52.839078Z] [nf-c4a39644ff3c5863592f28adc12b89ae-64486-fqx5t] [618_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0009' launched from sub-workflow 'CallGenome'
[2026-06-05T13:59:52.839849Z] [nf-c4a39644ff3c5863592f28adc12b89ae-64486-fqx5t] [618_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0000' from sub-workflow 'CallGenome'
[2026-06-05T13:59:52.843040Z] [nf-c4a39644ff3c5863592f28adc12b89ae-64486-fqx5t] [618_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_022_chrX_0000] Task initiated on local node
[2026-06-05T13:59:52.848087Z] [nf-c4a39644ff3c5863592f28adc12b89ae-64486-fqx5t] [618_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0005' launched from sub-workflow 'CallGenome'
[2026-06-05T13:59:52.848781Z] [nf-c4a39644ff3c5863592f28adc12b89ae-64486-fqx5t] [618_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0002' from sub-workflow 'CallGenome'
[2026-06-05T13:59:52.852082Z] [nf-c4a39644ff3c5863592f28adc12b89ae-64486-fqx5t] [618_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_022_chrX_0002] Task initiated on local node
[2026-06-05T13:59:52.963212Z] [nf-c4a39644ff3c5863592f28adc12b89ae-64486-fqx5t] [618_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0010' launched from sub-workflow 'CallGenome'
[2026-06-05T13:59:52.964025Z] [nf-c4a39644ff3c5863592f28adc12b89ae-64486-fqx5t] [618_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0006' from sub-workflow 'CallGenome'
[2026-06-05T13:59:52.967643Z] [nf-c4a39644ff3c5863592f28adc12b89ae-64486-fqx5t] [618_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_022_chrX_0006] Task initiated on local node
[2026-06-05T13:59:52.996398Z] [nf-c4a39644ff3c5863592f28adc12b89ae-64486-fqx5t] [618_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0001' launched from sub-workflow 'CallGenome'
[2026-06-05T13:59:52.997145Z] [nf-c4a39644ff3c5863592f28adc12b89ae-64486-fqx5t] [618_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0000' from sub-workflow 'CallGenome'
[2026-06-05T13:59:53.000580Z] [nf-c4a39644ff3c5863592f28adc12b89ae-64486-fqx5t] [618_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_008_chr9_0000] Task initiated on local node
[2026-06-05T13:59:53.062664Z] [nf-c4a39644ff3c5863592f28adc12b89ae-64486-fqx5t] [618_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0000' launched from sub-workflow 'CallGenome'
[2026-06-05T13:59:53.063403Z] [nf-c4a39644ff3c5863592f28adc12b89ae-64486-fqx5t] [618_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0007' from sub-workflow 'CallGenome'
[2026-06-05T13:59:53.067141Z] [nf-c4a39644ff3c5863592f28adc12b89ae-64486-fqx5t] [618_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_008_chr9_0007] Task initiated on local node
[2026-06-05T13:59:53.178357Z] [nf-c4a39644ff3c5863592f28adc12b89ae-64486-fqx5t] [618_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0007' launched from sub-workflow 'CallGenome'
[2026-06-05T13:59:53.179095Z] [nf-c4a39644ff3c5863592f28adc12b89ae-64486-fqx5t] [618_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0007' from sub-workflow 'CallGenome'
[2026-06-05T13:59:53.182455Z] [nf-c4a39644ff3c5863592f28adc12b89ae-64486-fqx5t] [618_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_008_chr9_0007] Task initiated on local node
[2026-06-05T13:59:53.243608Z] [nf-c4a39644ff3c5863592f28adc12b89ae-64486-fqx5t] [618_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0007' launched from sub-workflow 'CallGenome'
[2026-06-05T13:59:53.244377Z] [nf-c4a39644ff3c5863592f28adc12b89ae-64486-fqx5t] [618_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0001' from sub-workflow 'CallGenome'
[2026-06-05T13:59:53.248063Z] [nf-c4a39644ff3c5863592f28adc12b89ae-64486-fqx5t] [618_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_008_chr9_0001] Task initiated on local node
[2026-06-05T13:59:53.309158Z] [nf-c4a39644ff3c5863592f28adc12b89ae-64486-fqx5t] [618_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0001' launched from sub-workflow 'CallGenome'
[2026-06-05T13:59:53.309916Z] [nf-c4a39644ff3c5863592f28adc12b89ae-64486-fqx5t] [618_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0003' from sub-workflow 'CallGenome'
[2026-06-05T13:59:53.312859Z] [nf-c4a39644ff3c5863592f28adc12b89ae-64486-fqx5t] [618_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_008_chr9_0003] Task initiated on local node
[2026-06-05T13:59:53.374479Z] [nf-c4a39644ff3c5863592f28adc12b89ae-64486-fqx5t] [618_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0003' launched from sub-workflow 'CallGenome'
[2026-06-05T13:59:53.375198Z] [nf-c4a39644ff3c5863592f28adc12b89ae-64486-fqx5t] [618_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0001' from sub-workflow 'CallGenome'
[2026-06-05T13:59:53.378597Z] [nf-c4a39644ff3c5863592f28adc12b89ae-64486-fqx5t] [618_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_008_chr9_0001] Task initiated on local node
[2026-06-05T13:59:53.440261Z] [nf-c4a39644ff3c5863592f28adc12b89ae-64486-fqx5t] [618_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0001' launched from sub-workflow 'CallGenome'
[2026-06-05T13:59:53.441069Z] [nf-c4a39644ff3c5863592f28adc12b89ae-64486-fqx5t] [618_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0005' from sub-workflow 'CallGenome'
[2026-06-05T13:59:53.444426Z] [nf-c4a39644ff3c5863592f28adc12b89ae-64486-fqx5t] [618_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_008_chr9_0005] Task initiated on local node
[2026-06-05T13:59:53.555915Z] [nf-c4a39644ff3c5863592f28adc12b89ae-64486-fqx5t] [618_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0005' launched from sub-workflow 'CallGenome'
[2026-06-05T13:59:53.556003Z] [nf-c4a39644ff3c5863592f28adc12b89ae-64486-fqx5t] [618_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0009' launched from sub-workflow 'CallGenome'
[2026-06-05T13:59:53.556634Z] [nf-c4a39644ff3c5863592f28adc12b89ae-64486-fqx5t] [618_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0009' from sub-workflow 'CallGenome'
[2026-06-05T13:59:53.557154Z] [nf-c4a39644ff3c5863592f28adc12b89ae-64486-fqx5t] [618_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0003' from sub-workflow 'CallGenome'
[2026-06-05T13:59:53.560741Z] [nf-c4a39644ff3c5863592f28adc12b89ae-64486-fqx5t] [618_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_022_chrX_0009] Task initiated on local node
[2026-06-05T13:59:53.562467Z] [nf-c4a39644ff3c5863592f28adc12b89ae-64486-fqx5t] [618_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_022_chrX_0003] Task initiated on local node
[2026-06-05T13:59:53.622266Z] [nf-c4a39644ff3c5863592f28adc12b89ae-64486-fqx5t] [618_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0009' launched from sub-workflow 'CallGenome'
[2026-06-05T13:59:53.623041Z] [nf-c4a39644ff3c5863592f28adc12b89ae-64486-fqx5t] [618_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0006' from sub-workflow 'CallGenome'
[2026-06-05T13:59:53.626310Z] [nf-c4a39644ff3c5863592f28adc12b89ae-64486-fqx5t] [618_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_008_chr9_0006] Task initiated on local node
[2026-06-05T13:59:53.687506Z] [nf-c4a39644ff3c5863592f28adc12b89ae-64486-fqx5t] [618_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0006' launched from sub-workflow 'CallGenome'
[2026-06-05T13:59:53.688252Z] [nf-c4a39644ff3c5863592f28adc12b89ae-64486-fqx5t] [618_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0011' from sub-workflow 'CallGenome'
[2026-06-05T13:59:53.691684Z] [nf-c4a39644ff3c5863592f28adc12b89ae-64486-fqx5t] [618_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_022_chrX_0011] Task initiated on local node
[2026-06-05T13:59:53.720419Z] [nf-c4a39644ff3c5863592f28adc12b89ae-64486-fqx5t] [618_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0004' launched from sub-workflow 'CallGenome'
[2026-06-05T13:59:53.721323Z] [nf-c4a39644ff3c5863592f28adc12b89ae-64486-fqx5t] [618_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0004' from sub-workflow 'CallGenome'
[2026-06-05T13:59:53.724491Z] [nf-c4a39644ff3c5863592f28adc12b89ae-64486-fqx5t] [618_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_022_chrX_0004] Task initiated on local node
[2026-06-05T13:59:53.786038Z] [nf-c4a39644ff3c5863592f28adc12b89ae-64486-fqx5t] [618_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0004' launched from sub-workflow 'CallGenome'
[2026-06-05T13:59:53.786783Z] [nf-c4a39644ff3c5863592f28adc12b89ae-64486-fqx5t] [618_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0008' from sub-workflow 'CallGenome'
[2026-06-05T13:59:53.789935Z] [nf-c4a39644ff3c5863592f28adc12b89ae-64486-fqx5t] [618_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_008_chr9_0008] Task initiated on local node
[2026-06-05T13:59:53.851099Z] [nf-c4a39644ff3c5863592f28adc12b89ae-64486-fqx5t] [618_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0008' launched from sub-workflow 'CallGenome'
[2026-06-05T13:59:53.851793Z] [nf-c4a39644ff3c5863592f28adc12b89ae-64486-fqx5t] [618_1] [TaskManager] Launching command task: 'CallGenome+fixVcfHeader_chromId_008_chr9_0000' from sub-workflow 'CallGenome'
[2026-06-05T13:59:53.855498Z] [nf-c4a39644ff3c5863592f28adc12b89ae-64486-fqx5t] [618_1] [TaskRunner:CallGenome+fixVcfHeader_chromId_008_chr9_0000] Task initiated on local node
[2026-06-05T13:59:53.917771Z] [nf-c4a39644ff3c5863592f28adc12b89ae-64486-fqx5t] [618_1] [TaskManager] Completed command task: 'CallGenome+fixVcfHeader_chromId_008_chr9_0000' launched from sub-workflow 'CallGenome'
[2026-06-05T13:59:53.918495Z] [nf-c4a39644ff3c5863592f28adc12b89ae-64486-fqx5t] [618_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0000' from sub-workflow 'CallGenome'
[2026-06-05T13:59:53.921670Z] [nf-c4a39644ff3c5863592f28adc12b89ae-64486-fqx5t] [618_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_008_chr9_0000] Task initiated on local node
[2026-06-05T13:59:53.983943Z] [nf-c4a39644ff3c5863592f28adc12b89ae-64486-fqx5t] [618_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0000' launched from sub-workflow 'CallGenome'
[2026-06-05T13:59:53.984599Z] [nf-c4a39644ff3c5863592f28adc12b89ae-64486-fqx5t] [618_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0010' from sub-workflow 'CallGenome'
[2026-06-05T13:59:53.988187Z] [nf-c4a39644ff3c5863592f28adc12b89ae-64486-fqx5t] [618_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_022_chrX_0010] Task initiated on local node
[2026-06-05T13:59:54.049154Z] [nf-c4a39644ff3c5863592f28adc12b89ae-64486-fqx5t] [618_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0010' launched from sub-workflow 'CallGenome'
[2026-06-05T13:59:54.049828Z] [nf-c4a39644ff3c5863592f28adc12b89ae-64486-fqx5t] [618_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0005' from sub-workflow 'CallGenome'
[2026-06-05T13:59:54.053242Z] [nf-c4a39644ff3c5863592f28adc12b89ae-64486-fqx5t] [618_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_008_chr9_0005] Task initiated on local node
[2026-06-05T13:59:54.114020Z] [nf-c4a39644ff3c5863592f28adc12b89ae-64486-fqx5t] [618_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0000' launched from sub-workflow 'CallGenome'
[2026-06-05T13:59:54.114106Z] [nf-c4a39644ff3c5863592f28adc12b89ae-64486-fqx5t] [618_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0005' launched from sub-workflow 'CallGenome'
[2026-06-05T13:59:54.114689Z] [nf-c4a39644ff3c5863592f28adc12b89ae-64486-fqx5t] [618_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0000' from sub-workflow 'CallGenome'
[2026-06-05T13:59:54.116647Z] [nf-c4a39644ff3c5863592f28adc12b89ae-64486-fqx5t] [618_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_023_chrY_0000' from sub-workflow 'CallGenome'
[2026-06-05T13:59:54.118303Z] [nf-c4a39644ff3c5863592f28adc12b89ae-64486-fqx5t] [618_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_022_chrX_0000] Task initiated on local node
[2026-06-05T13:59:54.119807Z] [nf-c4a39644ff3c5863592f28adc12b89ae-64486-fqx5t] [618_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_023_chrY_0000] Task initiated on local node
[2026-06-05T13:59:54.150350Z] [nf-c4a39644ff3c5863592f28adc12b89ae-64486-fqx5t] [618_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0000' launched from sub-workflow 'CallGenome'
[2026-06-05T13:59:54.150989Z] [nf-c4a39644ff3c5863592f28adc12b89ae-64486-fqx5t] [618_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_023_chrY_0004' from sub-workflow 'CallGenome'
[2026-06-05T13:59:54.154143Z] [nf-c4a39644ff3c5863592f28adc12b89ae-64486-fqx5t] [618_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_023_chrY_0004] Task initiated on local node
[2026-06-05T13:59:54.155143Z] [nf-c4a39644ff3c5863592f28adc12b89ae-64486-fqx5t] [618_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_023_chrY_0000' launched from sub-workflow 'CallGenome'
[2026-06-05T13:59:54.155216Z] [nf-c4a39644ff3c5863592f28adc12b89ae-64486-fqx5t] [618_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0002' launched from sub-workflow 'CallGenome'
[2026-06-05T13:59:54.155959Z] [nf-c4a39644ff3c5863592f28adc12b89ae-64486-fqx5t] [618_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0002' from sub-workflow 'CallGenome'
[2026-06-05T13:59:54.156319Z] [nf-c4a39644ff3c5863592f28adc12b89ae-64486-fqx5t] [618_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0013' from sub-workflow 'CallGenome'
[2026-06-05T13:59:54.160195Z] [nf-c4a39644ff3c5863592f28adc12b89ae-64486-fqx5t] [618_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_022_chrX_0013] Task initiated on local node
[2026-06-05T13:59:54.160439Z] [nf-c4a39644ff3c5863592f28adc12b89ae-64486-fqx5t] [618_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_022_chrX_0002] Task initiated on local node
[2026-06-05T13:59:54.220933Z] [nf-c4a39644ff3c5863592f28adc12b89ae-64486-fqx5t] [618_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0002' launched from sub-workflow 'CallGenome'
[2026-06-05T13:59:54.221020Z] [nf-c4a39644ff3c5863592f28adc12b89ae-64486-fqx5t] [618_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0013' launched from sub-workflow 'CallGenome'
[2026-06-05T13:59:54.221557Z] [nf-c4a39644ff3c5863592f28adc12b89ae-64486-fqx5t] [618_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0010' from sub-workflow 'CallGenome'
[2026-06-05T13:59:54.222134Z] [nf-c4a39644ff3c5863592f28adc12b89ae-64486-fqx5t] [618_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0004' from sub-workflow 'CallGenome'
[2026-06-05T13:59:54.226549Z] [nf-c4a39644ff3c5863592f28adc12b89ae-64486-fqx5t] [618_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_008_chr9_0010] Task initiated on local node
[2026-06-05T13:59:54.227744Z] [nf-c4a39644ff3c5863592f28adc12b89ae-64486-fqx5t] [618_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_008_chr9_0004] Task initiated on local node
[2026-06-05T13:59:54.337990Z] [nf-c4a39644ff3c5863592f28adc12b89ae-64486-fqx5t] [618_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_023_chrY_0004' launched from sub-workflow 'CallGenome'
[2026-06-05T13:59:54.338085Z] [nf-c4a39644ff3c5863592f28adc12b89ae-64486-fqx5t] [618_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0004' launched from sub-workflow 'CallGenome'
[2026-06-05T13:59:54.338635Z] [nf-c4a39644ff3c5863592f28adc12b89ae-64486-fqx5t] [618_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0004' from sub-workflow 'CallGenome'
[2026-06-05T13:59:54.340935Z] [nf-c4a39644ff3c5863592f28adc12b89ae-64486-fqx5t] [618_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_023_chrY_0004' from sub-workflow 'CallGenome'
[2026-06-05T13:59:54.342678Z] [nf-c4a39644ff3c5863592f28adc12b89ae-64486-fqx5t] [618_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_008_chr9_0004] Task initiated on local node
[2026-06-05T13:59:54.344585Z] [nf-c4a39644ff3c5863592f28adc12b89ae-64486-fqx5t] [618_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_023_chrY_0004] Task initiated on local node
[2026-06-05T13:59:54.407507Z] [nf-c4a39644ff3c5863592f28adc12b89ae-64486-fqx5t] [618_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0004' launched from sub-workflow 'CallGenome'
[2026-06-05T13:59:54.407605Z] [nf-c4a39644ff3c5863592f28adc12b89ae-64486-fqx5t] [618_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_023_chrY_0004' launched from sub-workflow 'CallGenome'
[2026-06-05T13:59:54.408156Z] [nf-c4a39644ff3c5863592f28adc12b89ae-64486-fqx5t] [618_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_023_chrY_0002' from sub-workflow 'CallGenome'
[2026-06-05T13:59:54.408819Z] [nf-c4a39644ff3c5863592f28adc12b89ae-64486-fqx5t] [618_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0003' from sub-workflow 'CallGenome'
[2026-06-05T13:59:54.412796Z] [nf-c4a39644ff3c5863592f28adc12b89ae-64486-fqx5t] [618_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_008_chr9_0003] Task initiated on local node
[2026-06-05T13:59:54.413545Z] [nf-c4a39644ff3c5863592f28adc12b89ae-64486-fqx5t] [618_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_023_chrY_0002] Task initiated on local node
[2026-06-05T13:59:54.431353Z] [nf-c4a39644ff3c5863592f28adc12b89ae-64486-fqx5t] [618_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_022_chrX_0012] Task initiated on local node
[2026-06-05T13:59:54.442903Z] [nf-c4a39644ff3c5863592f28adc12b89ae-64486-fqx5t] [618_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0012' launched from sub-workflow 'CallGenome'
[2026-06-05T13:59:54.443021Z] [nf-c4a39644ff3c5863592f28adc12b89ae-64486-fqx5t] [618_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0011' launched from sub-workflow 'CallGenome'
[2026-06-05T13:59:54.443919Z] [nf-c4a39644ff3c5863592f28adc12b89ae-64486-fqx5t] [618_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0012' from sub-workflow 'CallGenome'
[2026-06-05T13:59:54.444380Z] [nf-c4a39644ff3c5863592f28adc12b89ae-64486-fqx5t] [618_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0008' from sub-workflow 'CallGenome'
[2026-06-05T13:59:54.447988Z] [nf-c4a39644ff3c5863592f28adc12b89ae-64486-fqx5t] [618_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0003' launched from sub-workflow 'CallGenome'
[2026-06-05T13:59:54.448660Z] [nf-c4a39644ff3c5863592f28adc12b89ae-64486-fqx5t] [618_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_022_chrX_0012] Task initiated on local node
[2026-06-05T13:59:54.449107Z] [nf-c4a39644ff3c5863592f28adc12b89ae-64486-fqx5t] [618_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_022_chrX_0008] Task initiated on local node
[2026-06-05T13:59:54.449468Z] [nf-c4a39644ff3c5863592f28adc12b89ae-64486-fqx5t] [618_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0002' from sub-workflow 'CallGenome'
[2026-06-05T13:59:54.453024Z] [nf-c4a39644ff3c5863592f28adc12b89ae-64486-fqx5t] [618_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_008_chr9_0002] Task initiated on local node
[2026-06-05T13:59:54.482222Z] [nf-c4a39644ff3c5863592f28adc12b89ae-64486-fqx5t] [618_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0012' launched from sub-workflow 'CallGenome'
[2026-06-05T13:59:54.482825Z] [nf-c4a39644ff3c5863592f28adc12b89ae-64486-fqx5t] [618_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0001' from sub-workflow 'CallGenome'
[2026-06-05T13:59:54.486281Z] [nf-c4a39644ff3c5863592f28adc12b89ae-64486-fqx5t] [618_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_022_chrX_0001] Task initiated on local node
[2026-06-05T13:59:54.515284Z] [nf-c4a39644ff3c5863592f28adc12b89ae-64486-fqx5t] [618_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0002' launched from sub-workflow 'CallGenome'
[2026-06-05T13:59:54.515903Z] [nf-c4a39644ff3c5863592f28adc12b89ae-64486-fqx5t] [618_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0011' from sub-workflow 'CallGenome'
[2026-06-05T13:59:54.519365Z] [nf-c4a39644ff3c5863592f28adc12b89ae-64486-fqx5t] [618_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_008_chr9_0011] Task initiated on local node
[2026-06-05T13:59:54.531964Z] [nf-c4a39644ff3c5863592f28adc12b89ae-64486-fqx5t] [618_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0001' launched from sub-workflow 'CallGenome'
[2026-06-05T13:59:54.532755Z] [nf-c4a39644ff3c5863592f28adc12b89ae-64486-fqx5t] [618_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0002' from sub-workflow 'CallGenome'
[2026-06-05T13:59:54.535909Z] [nf-c4a39644ff3c5863592f28adc12b89ae-64486-fqx5t] [618_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_008_chr9_0002] Task initiated on local node
[2026-06-05T13:59:54.565226Z] [nf-c4a39644ff3c5863592f28adc12b89ae-64486-fqx5t] [618_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0002' launched from sub-workflow 'CallGenome'
[2026-06-05T13:59:54.565343Z] [nf-c4a39644ff3c5863592f28adc12b89ae-64486-fqx5t] [618_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0011' launched from sub-workflow 'CallGenome'
[2026-06-05T13:59:54.565882Z] [nf-c4a39644ff3c5863592f28adc12b89ae-64486-fqx5t] [618_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_023_chrY_0003' from sub-workflow 'CallGenome'
[2026-06-05T13:59:54.568925Z] [nf-c4a39644ff3c5863592f28adc12b89ae-64486-fqx5t] [618_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_023_chrY_0003] Task initiated on local node
[2026-06-05T13:59:54.630278Z] [nf-c4a39644ff3c5863592f28adc12b89ae-64486-fqx5t] [618_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_023_chrY_0003' launched from sub-workflow 'CallGenome'
[2026-06-05T13:59:54.630944Z] [nf-c4a39644ff3c5863592f28adc12b89ae-64486-fqx5t] [618_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_023_chrY_0003' from sub-workflow 'CallGenome'
[2026-06-05T13:59:54.633660Z] [nf-c4a39644ff3c5863592f28adc12b89ae-64486-fqx5t] [618_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_023_chrY_0003] Task initiated on local node
[2026-06-05T13:59:54.664188Z] [nf-c4a39644ff3c5863592f28adc12b89ae-64486-fqx5t] [618_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_023_chrY_0003' launched from sub-workflow 'CallGenome'
[2026-06-05T13:59:54.728541Z] [nf-c4a39644ff3c5863592f28adc12b89ae-64486-fqx5t] [618_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_023_chrY_0002' launched from sub-workflow 'CallGenome'
[2026-06-05T13:59:54.729117Z] [nf-c4a39644ff3c5863592f28adc12b89ae-64486-fqx5t] [618_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_023_chrY_0002' from sub-workflow 'CallGenome'
[2026-06-05T13:59:54.732175Z] [nf-c4a39644ff3c5863592f28adc12b89ae-64486-fqx5t] [618_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_023_chrY_0002] Task initiated on local node
[2026-06-05T13:59:54.793519Z] [nf-c4a39644ff3c5863592f28adc12b89ae-64486-fqx5t] [618_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_023_chrY_0002' launched from sub-workflow 'CallGenome'
[2026-06-05T13:59:54.857643Z] [nf-c4a39644ff3c5863592f28adc12b89ae-64486-fqx5t] [618_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0008' launched from sub-workflow 'CallGenome'
[2026-06-05T13:59:54.858206Z] [nf-c4a39644ff3c5863592f28adc12b89ae-64486-fqx5t] [618_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0008' from sub-workflow 'CallGenome'
[2026-06-05T13:59:54.861258Z] [nf-c4a39644ff3c5863592f28adc12b89ae-64486-fqx5t] [618_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_022_chrX_0008] Task initiated on local node
[2026-06-05T13:59:54.923994Z] [nf-c4a39644ff3c5863592f28adc12b89ae-64486-fqx5t] [618_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0008' launched from sub-workflow 'CallGenome'
[2026-06-05T13:59:54.956598Z] [nf-c4a39644ff3c5863592f28adc12b89ae-64486-fqx5t] [618_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0006' launched from sub-workflow 'CallGenome'
[2026-06-05T13:59:54.957119Z] [nf-c4a39644ff3c5863592f28adc12b89ae-64486-fqx5t] [618_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0006' from sub-workflow 'CallGenome'
[2026-06-05T13:59:54.959948Z] [nf-c4a39644ff3c5863592f28adc12b89ae-64486-fqx5t] [618_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_022_chrX_0006] Task initiated on local node
[2026-06-05T13:59:55.021492Z] [nf-c4a39644ff3c5863592f28adc12b89ae-64486-fqx5t] [618_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0006' launched from sub-workflow 'CallGenome'
[2026-06-05T13:59:55.085807Z] [nf-c4a39644ff3c5863592f28adc12b89ae-64486-fqx5t] [618_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0003' launched from sub-workflow 'CallGenome'
[2026-06-05T13:59:55.085901Z] [nf-c4a39644ff3c5863592f28adc12b89ae-64486-fqx5t] [618_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0011' launched from sub-workflow 'CallGenome'
[2026-06-05T13:59:55.086375Z] [nf-c4a39644ff3c5863592f28adc12b89ae-64486-fqx5t] [618_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0011' from sub-workflow 'CallGenome'
[2026-06-05T13:59:55.088424Z] [nf-c4a39644ff3c5863592f28adc12b89ae-64486-fqx5t] [618_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0003' from sub-workflow 'CallGenome'
[2026-06-05T13:59:55.089233Z] [nf-c4a39644ff3c5863592f28adc12b89ae-64486-fqx5t] [618_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_022_chrX_0011] Task initiated on local node
[2026-06-05T13:59:55.091734Z] [nf-c4a39644ff3c5863592f28adc12b89ae-64486-fqx5t] [618_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_022_chrX_0003] Task initiated on local node
[2026-06-05T13:59:55.153236Z] [nf-c4a39644ff3c5863592f28adc12b89ae-64486-fqx5t] [618_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0003' launched from sub-workflow 'CallGenome'
[2026-06-05T13:59:55.153314Z] [nf-c4a39644ff3c5863592f28adc12b89ae-64486-fqx5t] [618_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0011' launched from sub-workflow 'CallGenome'
[2026-06-05T13:59:56.320705Z] [nf-c4a39644ff3c5863592f28adc12b89ae-64486-fqx5t] [618_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0010' launched from sub-workflow 'CallGenome'
[2026-06-05T13:59:56.321237Z] [nf-c4a39644ff3c5863592f28adc12b89ae-64486-fqx5t] [618_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0010' from sub-workflow 'CallGenome'
[2026-06-05T13:59:56.323983Z] [nf-c4a39644ff3c5863592f28adc12b89ae-64486-fqx5t] [618_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_008_chr9_0010] Task initiated on local node
[2026-06-05T13:59:56.385641Z] [nf-c4a39644ff3c5863592f28adc12b89ae-64486-fqx5t] [618_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0010' launched from sub-workflow 'CallGenome'
[2026-06-05T13:59:56.385927Z] [nf-c4a39644ff3c5863592f28adc12b89ae-64486-fqx5t] [618_1] [TaskManager] Completed command task: 'CallGenome+completedAllGenomeSegments' launched from sub-workflow 'CallGenome'
[2026-06-05T13:59:56.386105Z] [nf-c4a39644ff3c5863592f28adc12b89ae-64486-fqx5t] [618_1] [TaskManager] Launching command task: 'CallGenome+Indel_concat_vcf' from sub-workflow 'CallGenome'
[2026-06-05T13:59:56.386679Z] [nf-c4a39644ff3c5863592f28adc12b89ae-64486-fqx5t] [618_1] [TaskManager] Launching command task: 'CallGenome+mergeRunStats' from sub-workflow 'CallGenome'
[2026-06-05T13:59:56.388431Z] [nf-c4a39644ff3c5863592f28adc12b89ae-64486-fqx5t] [618_1] [TaskManager] Launching command task: 'CallGenome+SNV_concat_vcf' from sub-workflow 'CallGenome'
[2026-06-05T13:59:56.389548Z] [nf-c4a39644ff3c5863592f28adc12b89ae-64486-fqx5t] [618_1] [TaskRunner:CallGenome+Indel_concat_vcf] Task initiated on local node
[2026-06-05T13:59:56.392864Z] [nf-c4a39644ff3c5863592f28adc12b89ae-64486-fqx5t] [618_1] [TaskRunner:CallGenome+SNV_concat_vcf] Task initiated on local node
[2026-06-05T13:59:56.393567Z] [nf-c4a39644ff3c5863592f28adc12b89ae-64486-fqx5t] [618_1] [TaskRunner:CallGenome+mergeRunStats] Task initiated on local node
[2026-06-05T13:59:56.421864Z] [nf-c4a39644ff3c5863592f28adc12b89ae-64486-fqx5t] [618_1] [TaskManager] Completed command task: 'CallGenome+SNV_concat_vcf' launched from sub-workflow 'CallGenome'
[2026-06-05T13:59:56.421948Z] [nf-c4a39644ff3c5863592f28adc12b89ae-64486-fqx5t] [618_1] [TaskManager] Completed command task: 'CallGenome+Indel_concat_vcf' launched from sub-workflow 'CallGenome'
[2026-06-05T13:59:56.422240Z] [nf-c4a39644ff3c5863592f28adc12b89ae-64486-fqx5t] [618_1] [TaskManager] Launching command task: 'CallGenome+Indel_index_vcf' from sub-workflow 'CallGenome'
[2026-06-05T13:59:56.423045Z] [nf-c4a39644ff3c5863592f28adc12b89ae-64486-fqx5t] [618_1] [TaskManager] Launching command task: 'CallGenome+SNV_index_vcf' from sub-workflow 'CallGenome'
[2026-06-05T13:59:56.425110Z] [nf-c4a39644ff3c5863592f28adc12b89ae-64486-fqx5t] [618_1] [TaskManager] Completed command task: 'CallGenome+mergeRunStats' launched from sub-workflow 'CallGenome'
[2026-06-05T13:59:56.426665Z] [nf-c4a39644ff3c5863592f28adc12b89ae-64486-fqx5t] [618_1] [TaskRunner:CallGenome+Indel_index_vcf] Task initiated on local node
[2026-06-05T13:59:56.427643Z] [nf-c4a39644ff3c5863592f28adc12b89ae-64486-fqx5t] [618_1] [TaskRunner:CallGenome+SNV_index_vcf] Task initiated on local node
[2026-06-05T13:59:56.457596Z] [nf-c4a39644ff3c5863592f28adc12b89ae-64486-fqx5t] [618_1] [TaskManager] Completed command task: 'CallGenome+Indel_index_vcf' launched from sub-workflow 'CallGenome'
[2026-06-05T13:59:56.457695Z] [nf-c4a39644ff3c5863592f28adc12b89ae-64486-fqx5t] [618_1] [TaskManager] Completed command task: 'CallGenome+SNV_index_vcf' launched from sub-workflow 'CallGenome'
[2026-06-05T13:59:56.457962Z] [nf-c4a39644ff3c5863592f28adc12b89ae-64486-fqx5t] [618_1] [TaskManager] Launching command task: 'CallGenome+removeTmpDir' from sub-workflow 'CallGenome'
[2026-06-05T13:59:56.461015Z] [nf-c4a39644ff3c5863592f28adc12b89ae-64486-fqx5t] [618_1] [TaskRunner:CallGenome+removeTmpDir] Task initiated on local node
[2026-06-05T13:59:56.522450Z] [nf-c4a39644ff3c5863592f28adc12b89ae-64486-fqx5t] [618_1] [TaskManager] Completed command task: 'CallGenome+removeTmpDir' launched from sub-workflow 'CallGenome'
[2026-06-05T14:00:01.296956Z] [nf-c4a39644ff3c5863592f28adc12b89ae-64486-fqx5t] [618_1] [TaskManager] Completed sub-workflow task: 'CallGenome' launched from master workflow
[2026-06-05T14:00:09.622179Z] [nf-c4a39644ff3c5863592f28adc12b89ae-64486-fqx5t] [618_1] [WorkflowRunner] Strelka somatic workflow successfully completed.
[2026-06-05T14:00:09.622179Z] [nf-c4a39644ff3c5863592f28adc12b89ae-64486-fqx5t] [618_1] [WorkflowRunner] 
[2026-06-05T14:00:09.622179Z] [nf-c4a39644ff3c5863592f28adc12b89ae-64486-fqx5t] [618_1] [WorkflowRunner] 	workflow version: 2.9.10
[2026-06-05T14:00:09.622228Z] [nf-c4a39644ff3c5863592f28adc12b89ae-64486-fqx5t] [618_1] [WorkflowRunner] 
[2026-06-05T14:00:09.622241Z] [nf-c4a39644ff3c5863592f28adc12b89ae-64486-fqx5t] [618_1] [WorkflowRunner] Workflow successfully completed all tasks
[2026-06-05T14:00:09.622249Z] [nf-c4a39644ff3c5863592f28adc12b89ae-64486-fqx5t] [618_1] [WorkflowRunner] Elapsed time for full workflow: 18 sec