Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/fb/2a76610d309579f5160531f647088a/counts_1.parquet
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/fb/2a76610d309579f5160531f647088a/ploidy_1.parquet
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/5f/7b21e6b3d5296dfad38952efcc4e3e/clustered_panel.csv
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/fb/2a76610d309579f5160531f647088a/sample_metrics_1.parquet
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/22/577ccfcdd740a62ac7aae416ef9ddb/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/22/577ccfcdd740a62ac7aae416ef9ddb/.command.run
==> STAGING COMPLETE (6 inputs)

mkdir -p failed for path /.config/matplotlib: [Errno 13] Permission denied: '/.config'
Matplotlib created a temporary cache directory at /tmp/matplotlib-0f2kmb63 because there was an issue with the default path (/.config/matplotlib); it is highly recommended to set the MPLCONFIGDIR environment variable to a writable directory, in particular to speed up the import of Matplotlib and to better support multiprocessing.
2026-06-05 14:04:14,838 - cnv_pipe.batch.jax_config - INFO - Setting JAX backend to 'cpu'
2026-06-05 14:04:15,643 - cnv_pipe.batch.run_model - INFO - JAX devices = [CpuDevice(id=0)]
2026-06-05 14:04:15,805 - cnv_pipe.batch.run_model - INFO - Loading counts from counts_1.parquet
2026-06-05 14:04:16,789 - cnv_pipe.batch.run_model - INFO - Loaded data with 4 samples
2026-06-05 14:04:16,940 - cnv_pipe.batch.run_model - INFO - Processing cluster 938 with 152 probes
2026-06-05 14:04:17,314 - cnv_pipe.batch.run_model.cluster938 - INFO - Child process started for cluster 938 with 152 probes
2026-06-05 14:05:05,290 - cnv_pipe.batch.run_model.cluster938 - INFO - Child process finished cluster 938. Wrote cluster_938_samples.csv and cluster_938_params.csv
2026-06-05 14:05:05,291 - cnv_pipe.batch.run_model - INFO - Cluster 938 finished in 48.35 seconds. Status: SUCCESS