cmdline: /opt/conda/share/sentieon-202308.03-3/libexec/driver -r Homo_sapiens_assembly38.fasta -t 12 --interval chr8_93795409-93795507.bed.gz -i Sig_18_Blood.recalibrated.bam --algo Haplotyper -d dbsnp_146.hg38.vcf.gz --emit_mode variant germline_control_2.haplotyper.chr8_93795409-93795507.bed.unfiltered.vcf.gz
This software is licensed to bgold@natera.com by Sentieon Inc.
progress 5% @chr8:144248877, elapsed 0.0s, est remaining 0.8s, peak mem 75MB, user 0.0s, sys 0.2s, output queue size 2323
progress 10% @chr9:36833270, elapsed 0.1s, est remaining 0.7s, peak mem 81MB, user 0.1s, sys 0.3s, output queue size 730
progress 15% @chr9:96758778, elapsed 0.1s, est remaining 0.7s, peak mem 87MB, user 0.1s, sys 0.4s, output queue size 2513
progress 20% @chr9:128940369, elapsed 0.2s, est remaining 0.7s, peak mem 99MB, user 0.1s, sys 0.6s, output queue size 5132
progress 25% @chr10:14908408, elapsed 0.2s, est remaining 0.6s, peak mem 114MB, user 0.2s, sys 0.7s, output queue size 7887
progress 30% @chr10:69246079, elapsed 0.3s, est remaining 0.6s, peak mem 117MB, user 0.2s, sys 0.9s, output queue size 10287
progress 35% @chr10:100497667, elapsed 0.3s, est remaining 0.6s, peak mem 129MB, user 0.3s, sys 1.2s, output queue size 12930
progress 40% @chr11:314922, elapsed 0.3s, est remaining 0.5s, peak mem 144MB, user 0.3s, sys 1.4s, output queue size 15512
progress 45% @chr11:17779456, elapsed 0.4s, est remaining 0.5s, peak mem 153MB, user 0.3s, sys 1.5s, output queue size 17668
progress 50% @chr11:61416105, elapsed 0.4s, est remaining 0.4s, peak mem 162MB, user 0.3s, sys 1.7s, output queue size 20031
progress 55% @chr11:73140031, elapsed 0.5s, est remaining 0.4s, peak mem 171MB, user 0.4s, sys 1.9s, output queue size 22705
progress 60% @chr11:114521968, elapsed 0.5s, est remaining 0.4s, peak mem 183MB, user 0.4s, sys 2.1s, output queue size 24996
progress 65% @chr12:6462034, elapsed 0.6s, est remaining 0.3s, peak mem 186MB, user 0.4s, sys 2.2s, output queue size 27353
progress 70% @chr12:31667647, elapsed 0.6s, est remaining 0.3s, peak mem 201MB, user 0.5s, sys 2.4s, output queue size 29444
progress 75% @chr12:55967857, elapsed 0.7s, est remaining 0.2s, peak mem 210MB, user 0.5s, sys 2.5s, output queue size 31920
progress 80% @chr12:100058029, elapsed 0.7s, est remaining 0.2s, peak mem 219MB, user 0.6s, sys 2.7s, output queue size 34654
progress 85% @chr12:123783947, elapsed 0.8s, est remaining 0.1s, peak mem 234MB, user 0.6s, sys 3.0s, output queue size 37508
progress 90% @chr13:48456200, elapsed 0.8s, est remaining 0.1s, peak mem 240MB, user 0.7s, sys 3.1s, output queue size 39872
progress 95% @chr14:22769791, elapsed 0.9s, est remaining 0.0s, peak mem 252MB, user 0.7s, sys 3.2s, output queue size 42132
progress 100% @chr14:57219322, elapsed 0.9s, est remaining 0.0s, peak mem 264MB, user 0.8s, sys 3.4s, output queue size 44683
sw version: sentieon-genomics-202308.03
os version: Linux 6.12.88
cpu vendor: GenuineIntel
 signature: 000a06d1
  features: 1f8bfbff fffab20b
  extended: f1bf27eb 1b407f7e
  amd bits: 2c100800 00000121
     brand: Intel(R) Xeon(R) 6975P-C
threads: 12 max 384
algo: Haplotyper
license: sentieon:Haplotyper=12
input file size: 74586803
output file size: 22310
reads: 1001133
contig: 48642 intervals 9000010 bases
"assemble": 1 calls 0.000 user 0.000 sys 0.000 real
"assemble_addRead": 1 calls 0.000 user 0.000 sys 0.000 real
"assemble_buildGraph": 2 calls 0.000 user 0.000 sys 0.000 real
"assemble_computecigar": 1 calls 0.000 user 0.000 sys 0.000 real
"assemble_kg_build_calcsize": 2 calls 0.000 user 0.000 sys 0.000 real
"assemble_kg_build_clear": 3 calls 0.000 user 0.000 sys 0.000 real
"assemble_kg_build_prepare": 4 calls 0.000 user 0.000 sys 0.000 real
"assemble_kg_build_threading": 1 calls 0.000 user 0.000 sys 0.000 real
"assemble_kg_op1": 1 calls 0.000 user 0.000 sys 0.000 real
"assemble_kg_op2": 1 calls 0.000 user 0.000 sys 0.000 real
"assemble_kg_op3": 1 calls 0.000 user 0.000 sys 0.000 real
"assemble_sg_clean": 1 calls 0.000 user 0.000 sys 0.000 real
"assemble_sg_create": 1 calls 0.000 user 0.000 sys 0.000 real
"checkGraph": 1 calls 0.000 user 0.000 sys 0.000 real
"findHaplotype": 1 calls 0.000 user 0.000 sys 0.000 real
active: 98785 calls 0.000 user 0.012 sys 0.018 real
advance: 50143 calls 0.007 user 0.004 sys 0.021 real
assemble_region: 1 calls 0.000 user 0.000 sys 0.000 real
calc: 98785 calls 0.000 user 0.005 sys 0.018 real
clip_region: 1 calls 0.000 user 0.000 sys 0.000 real
done: 1 calls 0.000 user 0.000 sys 0.002 real
execute: 1 calls 0.006 user 0.001 sys 2.025 real
fetch: 98785 calls 0.003 user 0.013 sys 0.018 real
fetch_ref: 98786 calls 0.118 user 0.047 sys 0.355 real
fetch_region: 1 calls 0.000 user 0.000 sys 0.000 real
idle: 51 calls 0.012 user 0.017 sys 26.044 real
init: 1 calls 0.033 user 0.008 sys 0.042 real
region: 98785 calls 0.000 user 0.000 sys 0.023 real
tracker: 98785 calls 0.049 user 0.002 sys 0.088 real
trim_region: 1 calls 0.000 user 0.000 sys 0.000 real
overall: 280100864 mem 1.519 user 5.263 sys 3.143 real
ls: cannot access '*.g.vcf.gz': No such file or directory
ls: cannot access '*.g.vcf.gz.tbi': No such file or directory