Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/fb/2a76610d309579f5160531f647088a/counts_1.parquet
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/fb/2a76610d309579f5160531f647088a/ploidy_1.parquet
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/5f/7b21e6b3d5296dfad38952efcc4e3e/clustered_panel.csv
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/fb/2a76610d309579f5160531f647088a/sample_metrics_1.parquet
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/b5/8ed7bfb25a94c0b4d552a379c06b41/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/b5/8ed7bfb25a94c0b4d552a379c06b41/.command.run
==> STAGING COMPLETE (6 inputs)

mkdir -p failed for path /.config/matplotlib: [Errno 13] Permission denied: '/.config'
Matplotlib created a temporary cache directory at /tmp/matplotlib-6sv2ha0m because there was an issue with the default path (/.config/matplotlib); it is highly recommended to set the MPLCONFIGDIR environment variable to a writable directory, in particular to speed up the import of Matplotlib and to better support multiprocessing.
2026-06-05 14:03:54,601 - cnv_pipe.batch.jax_config - INFO - Setting JAX backend to 'cpu'
2026-06-05 14:03:55,513 - cnv_pipe.batch.run_model - INFO - JAX devices = [CpuDevice(id=0)]
2026-06-05 14:03:55,687 - cnv_pipe.batch.run_model - INFO - Loading counts from counts_1.parquet
2026-06-05 14:03:56,764 - cnv_pipe.batch.run_model - INFO - Loaded data with 4 samples
2026-06-05 14:03:56,837 - cnv_pipe.batch.run_model - INFO - Processing cluster 806 with 72 probes
2026-06-05 14:03:57,215 - cnv_pipe.batch.run_model.cluster806 - INFO - Child process started for cluster 806 with 72 probes
2026-06-05 14:04:23,477 - cnv_pipe.batch.run_model.cluster806 - INFO - Child process finished cluster 806. Wrote cluster_806_samples.csv and cluster_806_params.csv
2026-06-05 14:04:23,478 - cnv_pipe.batch.run_model - INFO - Cluster 806 finished in 26.64 seconds. Status: SUCCESS