cmdline: /opt/conda/share/sentieon-202308.03-3/libexec/driver -r Homo_sapiens_assembly38.fasta -t 12 --interval chr14_64122012-64122133.bed.gz -i HCC1395_BL.recalibrated.bam --algo Haplotyper -d dbsnp_146.hg38.vcf.gz --emit_mode variant germline_control_1.haplotyper.chr14_64122012-64122133.bed.unfiltered.vcf.gz
This software is licensed to bgold@natera.com by Sentieon Inc.
progress 5% @chr14:101909589, elapsed 0.0s, est remaining 0.8s, peak mem 75MB, user 0.0s, sys 0.1s, output queue size 2433
progress 10% @chr15:40899144, elapsed 0.1s, est remaining 0.8s, peak mem 81MB, user 0.1s, sys 0.3s, output queue size 2083
progress 15% @chr15:63908520, elapsed 0.1s, est remaining 0.8s, peak mem 90MB, user 0.1s, sys 0.5s, output queue size 4704
progress 20% @chr15:87980531, elapsed 0.2s, est remaining 0.7s, peak mem 105MB, user 0.1s, sys 0.7s, output queue size 6990
progress 25% @chr16:1941257, elapsed 0.2s, est remaining 0.6s, peak mem 105MB, user 0.1s, sys 0.9s, output queue size 8676
progress 30% @chr16:23493360, elapsed 0.3s, est remaining 0.6s, peak mem 114MB, user 0.1s, sys 1.2s, output queue size 11155
progress 35% @chr16:66549938, elapsed 0.3s, est remaining 0.6s, peak mem 126MB, user 0.2s, sys 1.4s, output queue size 13761
progress 40% @chr16:89286039, elapsed 0.4s, est remaining 0.5s, peak mem 132MB, user 0.2s, sys 1.6s, output queue size 16236
progress 45% @chr17:10306939, elapsed 0.4s, est remaining 0.5s, peak mem 150MB, user 0.2s, sys 1.9s, output queue size 18848
progress 50% @chr17:36330448, elapsed 0.5s, est remaining 0.5s, peak mem 153MB, user 0.3s, sys 2.0s, output queue size 21449
progress 55% @chr17:45113439, elapsed 0.5s, est remaining 0.4s, peak mem 168MB, user 0.3s, sys 2.2s, output queue size 23686
progress 60% @chr17:68429996, elapsed 0.6s, est remaining 0.4s, peak mem 177MB, user 0.3s, sys 2.4s, output queue size 26228
progress 65% @chr18:5890198, elapsed 0.6s, est remaining 0.3s, peak mem 186MB, user 0.3s, sys 2.6s, output queue size 28939
progress 70% @chr18:62715684, elapsed 0.7s, est remaining 0.3s, peak mem 195MB, user 0.4s, sys 2.9s, output queue size 31316
progress 75% @chr19:6908689, elapsed 0.7s, est remaining 0.2s, peak mem 198MB, user 0.4s, sys 3.1s, output queue size 33707
progress 80% @chr19:15280265, elapsed 0.8s, est remaining 0.2s, peak mem 213MB, user 0.4s, sys 3.4s, output queue size 35966
progress 85% @chr19:36891492, elapsed 0.9s, est remaining 0.2s, peak mem 219MB, user 0.5s, sys 3.5s, output queue size 38277
progress 90% @chr19:46469733, elapsed 0.9s, est remaining 0.1s, peak mem 228MB, user 0.5s, sys 3.8s, output queue size 40449
progress 95% @chr20:36911173, elapsed 1.0s, est remaining 0.1s, peak mem 243MB, user 0.5s, sys 4.0s, output queue size 43087
progress 100% @chr20:63322058, elapsed 1.0s, est remaining 0.0s, peak mem 258MB, user 0.6s, sys 4.3s, output queue size 45525
sw version: sentieon-genomics-202308.03
os version: Linux 6.12.88
cpu vendor: GenuineIntel
 signature: 000a06d1
  features: 1f8bfbff fffab20b
  extended: f1bf27eb 1b407f7e
  amd bits: 2c100800 00000121
     brand: Intel(R) Xeon(R) 6975P-C
threads: 12 max 384
algo: Haplotyper
license: sentieon:Haplotyper=12
input file size: 71692764
output file size: 22307
reads: 1001089
contig: 48152 intervals 9000028 bases
active: 97912 calls 0.005 user 0.000 sys 0.018 real
advance: 49760 calls 0.002 user 0.012 sys 0.022 real
calc: 97912 calls 0.001 user 0.018 sys 0.017 real
done: 1 calls 0.000 user 0.000 sys 0.002 real
execute: 1 calls 0.002 user 0.002 sys 1.899 real
fetch: 97912 calls 0.004 user 0.012 sys 0.018 real
fetch_ref: 97912 calls 0.088 user 0.116 sys 0.366 real
idle: 39 calls 0.004 user 0.029 sys 22.997 real
init: 1 calls 0.030 user 0.010 sys 0.043 real
region: 97912 calls 0.000 user 0.000 sys 0.020 real
tracker: 97912 calls 0.045 user 0.012 sys 0.087 real
overall: 273813504 mem 1.085 user 6.129 sys 3.019 real
ls: cannot access '*.g.vcf.gz': No such file or directory
ls: cannot access '*.g.vcf.gz.tbi': No such file or directory