File Info

Filename
.command.err
Full Path
s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/25/dbab87f7890562d49c9e1fd914b8fc/.command.err
Size
62.0 KB
Task
DAQ:CONTROL_VARIANT_CALLING:CONTROL_SOMATIC_VC:BAM_VARIANT_CALLING_SOMATIC_STRELKA:STRELKA_SOMATIC (positive_somatic_control_1;chr19_15162349-15162662.bed)
Attempt

Content

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[W::hts_idx_load2] The index file is older than the data file: /tmp/nxf.XXXXAZ6RNw/chr19_15162349-15162662.bed.gz.tbi
[W::hts_idx_load2] The index file is older than the data file: /tmp/nxf.XXXXAZ6RNw/chr19_15162349-15162662.bed.gz.tbi
[W::hts_idx_load2] The index file is older than the data file: /tmp/nxf.XXXXAZ6RNw/chr19_15162349-15162662.bed.gz.tbi
[2026-06-05T14:00:01.857513Z] [nf-25dbab87f7890562d49c9e1fd914b8fc-cbe53-zh7sv] [684_1] [WorkflowRunner] Initiating pyFlow run
[2026-06-05T14:00:01.858778Z] [nf-25dbab87f7890562d49c9e1fd914b8fc-cbe53-zh7sv] [684_1] [WorkflowRunner] pyFlowClientWorkflowClass: StrelkaSomaticWorkflow
[2026-06-05T14:00:01.858789Z] [nf-25dbab87f7890562d49c9e1fd914b8fc-cbe53-zh7sv] [684_1] [WorkflowRunner] pyFlowVersion: 1.1.20
[2026-06-05T14:00:01.858794Z] [nf-25dbab87f7890562d49c9e1fd914b8fc-cbe53-zh7sv] [684_1] [WorkflowRunner] pythonVersion: 2.7.15.final.0
[2026-06-05T14:00:01.858799Z] [nf-25dbab87f7890562d49c9e1fd914b8fc-cbe53-zh7sv] [684_1] [WorkflowRunner] WorkingDir: '/tmp/nxf.XXXXAZ6RNw'
[2026-06-05T14:00:01.858803Z] [nf-25dbab87f7890562d49c9e1fd914b8fc-cbe53-zh7sv] [684_1] [WorkflowRunner] ProcessCmdLine: '/var/tmp/strelka/runWorkflow.py -m local -j 8'
[2026-06-05T14:00:01.858808Z] [nf-25dbab87f7890562d49c9e1fd914b8fc-cbe53-zh7sv] [684_1] [WorkflowRunner] [RunParameters] mode: local
[2026-06-05T14:00:01.858812Z] [nf-25dbab87f7890562d49c9e1fd914b8fc-cbe53-zh7sv] [684_1] [WorkflowRunner] [RunParameters] nCores: 8
[2026-06-05T14:00:01.858815Z] [nf-25dbab87f7890562d49c9e1fd914b8fc-cbe53-zh7sv] [684_1] [WorkflowRunner] [RunParameters] memMb: 3047507
[2026-06-05T14:00:01.858819Z] [nf-25dbab87f7890562d49c9e1fd914b8fc-cbe53-zh7sv] [684_1] [WorkflowRunner] [RunParameters] dataDir: /var/tmp/strelka/workspace/pyflow.data
[2026-06-05T14:00:01.858822Z] [nf-25dbab87f7890562d49c9e1fd914b8fc-cbe53-zh7sv] [684_1] [WorkflowRunner] [RunParameters] isDryRun: False
[2026-06-05T14:00:01.858826Z] [nf-25dbab87f7890562d49c9e1fd914b8fc-cbe53-zh7sv] [684_1] [WorkflowRunner] [RunParameters] isContinue: False
[2026-06-05T14:00:01.858829Z] [nf-25dbab87f7890562d49c9e1fd914b8fc-cbe53-zh7sv] [684_1] [WorkflowRunner] [RunParameters] isForceContinue: True
[2026-06-05T14:00:01.858833Z] [nf-25dbab87f7890562d49c9e1fd914b8fc-cbe53-zh7sv] [684_1] [WorkflowRunner] [RunParameters] mailTo: ''
[2026-06-05T14:00:01.859313Z] [nf-25dbab87f7890562d49c9e1fd914b8fc-cbe53-zh7sv] [684_1] [TaskRunner:masterWorkflow] Starting task specification for master workflow
[2026-06-05T14:00:01.859461Z] [nf-25dbab87f7890562d49c9e1fd914b8fc-cbe53-zh7sv] [684_1] [StrelkaSomaticWorkflow] Initiating Strelka somatic workflow version: 2.9.10
[2026-06-05T14:00:01.865406Z] [nf-25dbab87f7890562d49c9e1fd914b8fc-cbe53-zh7sv] [684_1] [WorkflowRunner] Adding sub-workflow task 'CallGenome' to master workflow
[2026-06-05T14:00:01.866396Z] [nf-25dbab87f7890562d49c9e1fd914b8fc-cbe53-zh7sv] [684_1] [TaskManager] Launching sub-workflow task: 'CallGenome' from master workflow
[2026-06-05T14:00:01.866796Z] [nf-25dbab87f7890562d49c9e1fd914b8fc-cbe53-zh7sv] [684_1] [TaskRunner:masterWorkflow] Finished task specification for master workflow
[2026-06-05T14:00:01.867277Z] [nf-25dbab87f7890562d49c9e1fd914b8fc-cbe53-zh7sv] [684_1] [TaskRunner:CallGenome] Starting task specification for sub-workflow
[2026-06-05T14:00:01.867669Z] [nf-25dbab87f7890562d49c9e1fd914b8fc-cbe53-zh7sv] [684_1] [WorkflowRunner] Adding command task 'CallGenome+makeTmpDir' to sub-workflow 'CallGenome'
[2026-06-05T14:00:01.868111Z] [nf-25dbab87f7890562d49c9e1fd914b8fc-cbe53-zh7sv] [684_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0000' to sub-workflow 'CallGenome'
[2026-06-05T14:00:01.868209Z] [nf-25dbab87f7890562d49c9e1fd914b8fc-cbe53-zh7sv] [684_1] [WorkflowRunner] Adding command task 'CallGenome+fixVcfHeader_chromId_001_chr2_0000' to sub-workflow 'CallGenome'
[2026-06-05T14:00:01.868284Z] [nf-25dbab87f7890562d49c9e1fd914b8fc-cbe53-zh7sv] [684_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0000' to sub-workflow 'CallGenome'
[2026-06-05T14:00:01.868407Z] [nf-25dbab87f7890562d49c9e1fd914b8fc-cbe53-zh7sv] [684_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0001' to sub-workflow 'CallGenome'
[2026-06-05T14:00:01.868476Z] [nf-25dbab87f7890562d49c9e1fd914b8fc-cbe53-zh7sv] [684_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0001' to sub-workflow 'CallGenome'
[2026-06-05T14:00:01.868595Z] [nf-25dbab87f7890562d49c9e1fd914b8fc-cbe53-zh7sv] [684_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0002' to sub-workflow 'CallGenome'
[2026-06-05T14:00:01.868660Z] [nf-25dbab87f7890562d49c9e1fd914b8fc-cbe53-zh7sv] [684_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0002' to sub-workflow 'CallGenome'
[2026-06-05T14:00:01.868847Z] [nf-25dbab87f7890562d49c9e1fd914b8fc-cbe53-zh7sv] [684_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0003' to sub-workflow 'CallGenome'
[2026-06-05T14:00:01.869087Z] [nf-25dbab87f7890562d49c9e1fd914b8fc-cbe53-zh7sv] [684_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0003' to sub-workflow 'CallGenome'
[2026-06-05T14:00:01.869693Z] [nf-25dbab87f7890562d49c9e1fd914b8fc-cbe53-zh7sv] [684_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0004' to sub-workflow 'CallGenome'
[2026-06-05T14:00:01.870250Z] [nf-25dbab87f7890562d49c9e1fd914b8fc-cbe53-zh7sv] [684_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0004' to sub-workflow 'CallGenome'
[2026-06-05T14:00:01.870572Z] [nf-25dbab87f7890562d49c9e1fd914b8fc-cbe53-zh7sv] [684_1] [TaskManager] Launching command task: 'CallGenome+makeTmpDir' from sub-workflow 'CallGenome'
[2026-06-05T14:00:01.870943Z] [nf-25dbab87f7890562d49c9e1fd914b8fc-cbe53-zh7sv] [684_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0005' to sub-workflow 'CallGenome'
[2026-06-05T14:00:01.871047Z] [nf-25dbab87f7890562d49c9e1fd914b8fc-cbe53-zh7sv] [684_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0005' to sub-workflow 'CallGenome'
[2026-06-05T14:00:01.871967Z] [nf-25dbab87f7890562d49c9e1fd914b8fc-cbe53-zh7sv] [684_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0006' to sub-workflow 'CallGenome'
[2026-06-05T14:00:01.872867Z] [nf-25dbab87f7890562d49c9e1fd914b8fc-cbe53-zh7sv] [684_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0006' to sub-workflow 'CallGenome'
[2026-06-05T14:00:01.876701Z] [nf-25dbab87f7890562d49c9e1fd914b8fc-cbe53-zh7sv] [684_1] [TaskRunner:CallGenome+makeTmpDir] Task initiated on local node
[2026-06-05T14:00:01.877173Z] [nf-25dbab87f7890562d49c9e1fd914b8fc-cbe53-zh7sv] [684_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0007' to sub-workflow 'CallGenome'
[2026-06-05T14:00:01.877575Z] [nf-25dbab87f7890562d49c9e1fd914b8fc-cbe53-zh7sv] [684_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0007' to sub-workflow 'CallGenome'
[2026-06-05T14:00:01.877846Z] [nf-25dbab87f7890562d49c9e1fd914b8fc-cbe53-zh7sv] [684_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0008' to sub-workflow 'CallGenome'
[2026-06-05T14:00:01.877926Z] [nf-25dbab87f7890562d49c9e1fd914b8fc-cbe53-zh7sv] [684_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0008' to sub-workflow 'CallGenome'
[2026-06-05T14:00:01.878051Z] [nf-25dbab87f7890562d49c9e1fd914b8fc-cbe53-zh7sv] [684_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0009' to sub-workflow 'CallGenome'
[2026-06-05T14:00:01.878136Z] [nf-25dbab87f7890562d49c9e1fd914b8fc-cbe53-zh7sv] [684_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0009' to sub-workflow 'CallGenome'
[2026-06-05T14:00:01.878255Z] [nf-25dbab87f7890562d49c9e1fd914b8fc-cbe53-zh7sv] [684_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0010' to sub-workflow 'CallGenome'
[2026-06-05T14:00:01.878323Z] [nf-25dbab87f7890562d49c9e1fd914b8fc-cbe53-zh7sv] [684_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0010' to sub-workflow 'CallGenome'
[2026-06-05T14:00:01.878440Z] [nf-25dbab87f7890562d49c9e1fd914b8fc-cbe53-zh7sv] [684_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0011' to sub-workflow 'CallGenome'
[2026-06-05T14:00:01.878592Z] [nf-25dbab87f7890562d49c9e1fd914b8fc-cbe53-zh7sv] [684_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0011' to sub-workflow 'CallGenome'
[2026-06-05T14:00:01.878936Z] [nf-25dbab87f7890562d49c9e1fd914b8fc-cbe53-zh7sv] [684_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0012' to sub-workflow 'CallGenome'
[2026-06-05T14:00:01.879473Z] [nf-25dbab87f7890562d49c9e1fd914b8fc-cbe53-zh7sv] [684_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0012' to sub-workflow 'CallGenome'
[2026-06-05T14:00:01.879601Z] [nf-25dbab87f7890562d49c9e1fd914b8fc-cbe53-zh7sv] [684_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0013' to sub-workflow 'CallGenome'
[2026-06-05T14:00:01.879697Z] [nf-25dbab87f7890562d49c9e1fd914b8fc-cbe53-zh7sv] [684_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0013' to sub-workflow 'CallGenome'
[2026-06-05T14:00:01.879830Z] [nf-25dbab87f7890562d49c9e1fd914b8fc-cbe53-zh7sv] [684_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0014' to sub-workflow 'CallGenome'
[2026-06-05T14:00:01.879894Z] [nf-25dbab87f7890562d49c9e1fd914b8fc-cbe53-zh7sv] [684_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0014' to sub-workflow 'CallGenome'
[2026-06-05T14:00:01.880010Z] [nf-25dbab87f7890562d49c9e1fd914b8fc-cbe53-zh7sv] [684_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0015' to sub-workflow 'CallGenome'
[2026-06-05T14:00:01.880077Z] [nf-25dbab87f7890562d49c9e1fd914b8fc-cbe53-zh7sv] [684_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0015' to sub-workflow 'CallGenome'
[2026-06-05T14:00:01.880190Z] [nf-25dbab87f7890562d49c9e1fd914b8fc-cbe53-zh7sv] [684_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0016' to sub-workflow 'CallGenome'
[2026-06-05T14:00:01.880256Z] [nf-25dbab87f7890562d49c9e1fd914b8fc-cbe53-zh7sv] [684_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0016' to sub-workflow 'CallGenome'
[2026-06-05T14:00:01.880382Z] [nf-25dbab87f7890562d49c9e1fd914b8fc-cbe53-zh7sv] [684_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0017' to sub-workflow 'CallGenome'
[2026-06-05T14:00:01.880582Z] [nf-25dbab87f7890562d49c9e1fd914b8fc-cbe53-zh7sv] [684_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0017' to sub-workflow 'CallGenome'
[2026-06-05T14:00:01.881202Z] [nf-25dbab87f7890562d49c9e1fd914b8fc-cbe53-zh7sv] [684_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0018' to sub-workflow 'CallGenome'
[2026-06-05T14:00:01.881275Z] [nf-25dbab87f7890562d49c9e1fd914b8fc-cbe53-zh7sv] [684_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0018' to sub-workflow 'CallGenome'
[2026-06-05T14:00:01.881392Z] [nf-25dbab87f7890562d49c9e1fd914b8fc-cbe53-zh7sv] [684_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0019' to sub-workflow 'CallGenome'
[2026-06-05T14:00:01.881460Z] [nf-25dbab87f7890562d49c9e1fd914b8fc-cbe53-zh7sv] [684_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0019' to sub-workflow 'CallGenome'
[2026-06-05T14:00:01.882447Z] [nf-25dbab87f7890562d49c9e1fd914b8fc-cbe53-zh7sv] [684_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0020' to sub-workflow 'CallGenome'
[2026-06-05T14:00:01.882916Z] [nf-25dbab87f7890562d49c9e1fd914b8fc-cbe53-zh7sv] [684_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0020' to sub-workflow 'CallGenome'
[2026-06-05T14:00:01.883056Z] [nf-25dbab87f7890562d49c9e1fd914b8fc-cbe53-zh7sv] [684_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_018_chr19_0000' to sub-workflow 'CallGenome'
[2026-06-05T14:00:01.883124Z] [nf-25dbab87f7890562d49c9e1fd914b8fc-cbe53-zh7sv] [684_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_018_chr19_0000' to sub-workflow 'CallGenome'
[2026-06-05T14:00:01.883337Z] [nf-25dbab87f7890562d49c9e1fd914b8fc-cbe53-zh7sv] [684_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_018_chr19_0001' to sub-workflow 'CallGenome'
[2026-06-05T14:00:01.883408Z] [nf-25dbab87f7890562d49c9e1fd914b8fc-cbe53-zh7sv] [684_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_018_chr19_0001' to sub-workflow 'CallGenome'
[2026-06-05T14:00:01.883522Z] [nf-25dbab87f7890562d49c9e1fd914b8fc-cbe53-zh7sv] [684_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_018_chr19_0002' to sub-workflow 'CallGenome'
[2026-06-05T14:00:01.883586Z] [nf-25dbab87f7890562d49c9e1fd914b8fc-cbe53-zh7sv] [684_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_018_chr19_0002' to sub-workflow 'CallGenome'
[2026-06-05T14:00:01.883703Z] [nf-25dbab87f7890562d49c9e1fd914b8fc-cbe53-zh7sv] [684_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_018_chr19_0003' to sub-workflow 'CallGenome'
[2026-06-05T14:00:01.883782Z] [nf-25dbab87f7890562d49c9e1fd914b8fc-cbe53-zh7sv] [684_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_018_chr19_0003' to sub-workflow 'CallGenome'
[2026-06-05T14:00:01.884196Z] [nf-25dbab87f7890562d49c9e1fd914b8fc-cbe53-zh7sv] [684_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_018_chr19_0004' to sub-workflow 'CallGenome'
[2026-06-05T14:00:01.884765Z] [nf-25dbab87f7890562d49c9e1fd914b8fc-cbe53-zh7sv] [684_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_018_chr19_0004' to sub-workflow 'CallGenome'
[2026-06-05T14:00:01.884906Z] [nf-25dbab87f7890562d49c9e1fd914b8fc-cbe53-zh7sv] [684_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_019_chr20_0000' to sub-workflow 'CallGenome'
[2026-06-05T14:00:01.884978Z] [nf-25dbab87f7890562d49c9e1fd914b8fc-cbe53-zh7sv] [684_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_019_chr20_0000' to sub-workflow 'CallGenome'
[2026-06-05T14:00:01.885089Z] [nf-25dbab87f7890562d49c9e1fd914b8fc-cbe53-zh7sv] [684_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_019_chr20_0001' to sub-workflow 'CallGenome'
[2026-06-05T14:00:01.885155Z] [nf-25dbab87f7890562d49c9e1fd914b8fc-cbe53-zh7sv] [684_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_019_chr20_0001' to sub-workflow 'CallGenome'
[2026-06-05T14:00:01.885273Z] [nf-25dbab87f7890562d49c9e1fd914b8fc-cbe53-zh7sv] [684_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_019_chr20_0002' to sub-workflow 'CallGenome'
[2026-06-05T14:00:01.885335Z] [nf-25dbab87f7890562d49c9e1fd914b8fc-cbe53-zh7sv] [684_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_019_chr20_0002' to sub-workflow 'CallGenome'
[2026-06-05T14:00:01.885453Z] [nf-25dbab87f7890562d49c9e1fd914b8fc-cbe53-zh7sv] [684_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_019_chr20_0003' to sub-workflow 'CallGenome'
[2026-06-05T14:00:01.885518Z] [nf-25dbab87f7890562d49c9e1fd914b8fc-cbe53-zh7sv] [684_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_019_chr20_0003' to sub-workflow 'CallGenome'
[2026-06-05T14:00:01.885628Z] [nf-25dbab87f7890562d49c9e1fd914b8fc-cbe53-zh7sv] [684_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_019_chr20_0004' to sub-workflow 'CallGenome'
[2026-06-05T14:00:01.885698Z] [nf-25dbab87f7890562d49c9e1fd914b8fc-cbe53-zh7sv] [684_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_019_chr20_0004' to sub-workflow 'CallGenome'
[2026-06-05T14:00:01.898680Z] [nf-25dbab87f7890562d49c9e1fd914b8fc-cbe53-zh7sv] [684_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_019_chr20_0005' to sub-workflow 'CallGenome'
[2026-06-05T14:00:01.898825Z] [nf-25dbab87f7890562d49c9e1fd914b8fc-cbe53-zh7sv] [684_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_019_chr20_0005' to sub-workflow 'CallGenome'
[2026-06-05T14:00:01.898898Z] [nf-25dbab87f7890562d49c9e1fd914b8fc-cbe53-zh7sv] [684_1] [WorkflowRunner] Adding command task 'CallGenome+completedAllGenomeSegments' to sub-workflow 'CallGenome'
[2026-06-05T14:00:01.899092Z] [nf-25dbab87f7890562d49c9e1fd914b8fc-cbe53-zh7sv] [684_1] [WorkflowRunner] Adding command task 'CallGenome+SNV_concat_vcf' to sub-workflow 'CallGenome'
[2026-06-05T14:00:01.899170Z] [nf-25dbab87f7890562d49c9e1fd914b8fc-cbe53-zh7sv] [684_1] [WorkflowRunner] Adding command task 'CallGenome+SNV_index_vcf' to sub-workflow 'CallGenome'
[2026-06-05T14:00:01.899259Z] [nf-25dbab87f7890562d49c9e1fd914b8fc-cbe53-zh7sv] [684_1] [WorkflowRunner] Adding command task 'CallGenome+Indel_concat_vcf' to sub-workflow 'CallGenome'
[2026-06-05T14:00:01.899323Z] [nf-25dbab87f7890562d49c9e1fd914b8fc-cbe53-zh7sv] [684_1] [WorkflowRunner] Adding command task 'CallGenome+Indel_index_vcf' to sub-workflow 'CallGenome'
[2026-06-05T14:00:01.899432Z] [nf-25dbab87f7890562d49c9e1fd914b8fc-cbe53-zh7sv] [684_1] [WorkflowRunner] Adding command task 'CallGenome+mergeRunStats' to sub-workflow 'CallGenome'
[2026-06-05T14:00:01.899509Z] [nf-25dbab87f7890562d49c9e1fd914b8fc-cbe53-zh7sv] [684_1] [WorkflowRunner] Adding command task 'CallGenome+removeTmpDir' to sub-workflow 'CallGenome'
[2026-06-05T14:00:01.901185Z] [nf-25dbab87f7890562d49c9e1fd914b8fc-cbe53-zh7sv] [684_1] [TaskRunner:CallGenome] Finished task specification for sub-workflow
[2026-06-05T14:00:01.907359Z] [nf-25dbab87f7890562d49c9e1fd914b8fc-cbe53-zh7sv] [684_1] [TaskManager] Completed command task: 'CallGenome+makeTmpDir' launched from sub-workflow 'CallGenome'
[2026-06-05T14:00:01.908131Z] [nf-25dbab87f7890562d49c9e1fd914b8fc-cbe53-zh7sv] [684_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0014' from sub-workflow 'CallGenome'
[2026-06-05T14:00:01.908623Z] [nf-25dbab87f7890562d49c9e1fd914b8fc-cbe53-zh7sv] [684_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0003' from sub-workflow 'CallGenome'
[2026-06-05T14:00:01.909673Z] [nf-25dbab87f7890562d49c9e1fd914b8fc-cbe53-zh7sv] [684_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_018_chr19_0003' from sub-workflow 'CallGenome'
[2026-06-05T14:00:01.910349Z] [nf-25dbab87f7890562d49c9e1fd914b8fc-cbe53-zh7sv] [684_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_019_chr20_0005' from sub-workflow 'CallGenome'
[2026-06-05T14:00:01.911704Z] [nf-25dbab87f7890562d49c9e1fd914b8fc-cbe53-zh7sv] [684_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0017' from sub-workflow 'CallGenome'
[2026-06-05T14:00:01.912988Z] [nf-25dbab87f7890562d49c9e1fd914b8fc-cbe53-zh7sv] [684_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_018_chr19_0002' from sub-workflow 'CallGenome'
[2026-06-05T14:00:01.914133Z] [nf-25dbab87f7890562d49c9e1fd914b8fc-cbe53-zh7sv] [684_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_018_chr19_0000' from sub-workflow 'CallGenome'
[2026-06-05T14:00:01.915558Z] [nf-25dbab87f7890562d49c9e1fd914b8fc-cbe53-zh7sv] [684_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0011' from sub-workflow 'CallGenome'
[2026-06-05T14:00:01.920990Z] [nf-25dbab87f7890562d49c9e1fd914b8fc-cbe53-zh7sv] [684_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0014] Task initiated on local node
[2026-06-05T14:00:01.929818Z] [nf-25dbab87f7890562d49c9e1fd914b8fc-cbe53-zh7sv] [684_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0003] Task initiated on local node
[2026-06-05T14:00:01.930398Z] [nf-25dbab87f7890562d49c9e1fd914b8fc-cbe53-zh7sv] [684_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_018_chr19_0003] Task initiated on local node
[2026-06-05T14:00:01.939581Z] [nf-25dbab87f7890562d49c9e1fd914b8fc-cbe53-zh7sv] [684_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0017] Task initiated on local node
[2026-06-05T14:00:01.943247Z] [nf-25dbab87f7890562d49c9e1fd914b8fc-cbe53-zh7sv] [684_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_019_chr20_0005] Task initiated on local node
[2026-06-05T14:00:01.956234Z] [nf-25dbab87f7890562d49c9e1fd914b8fc-cbe53-zh7sv] [684_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0011] Task initiated on local node
[2026-06-05T14:00:01.956689Z] [nf-25dbab87f7890562d49c9e1fd914b8fc-cbe53-zh7sv] [684_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_018_chr19_0000] Task initiated on local node
[2026-06-05T14:00:01.957692Z] [nf-25dbab87f7890562d49c9e1fd914b8fc-cbe53-zh7sv] [684_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_018_chr19_0002] Task initiated on local node
[2026-06-05T14:00:02.090963Z] [nf-25dbab87f7890562d49c9e1fd914b8fc-cbe53-zh7sv] [684_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_019_chr20_0005' launched from sub-workflow 'CallGenome'
[2026-06-05T14:00:02.091468Z] [nf-25dbab87f7890562d49c9e1fd914b8fc-cbe53-zh7sv] [684_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_018_chr19_0000' launched from sub-workflow 'CallGenome'
[2026-06-05T14:00:02.092538Z] [nf-25dbab87f7890562d49c9e1fd914b8fc-cbe53-zh7sv] [684_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0019' from sub-workflow 'CallGenome'
[2026-06-05T14:00:02.093363Z] [nf-25dbab87f7890562d49c9e1fd914b8fc-cbe53-zh7sv] [684_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_019_chr20_0000' from sub-workflow 'CallGenome'
[2026-06-05T14:00:02.103065Z] [nf-25dbab87f7890562d49c9e1fd914b8fc-cbe53-zh7sv] [684_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0019] Task initiated on local node
[2026-06-05T14:00:02.104959Z] [nf-25dbab87f7890562d49c9e1fd914b8fc-cbe53-zh7sv] [684_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_019_chr20_0000] Task initiated on local node
[2026-06-05T14:00:03.266880Z] [nf-25dbab87f7890562d49c9e1fd914b8fc-cbe53-zh7sv] [684_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_018_chr19_0002' launched from sub-workflow 'CallGenome'
[2026-06-05T14:00:03.267805Z] [nf-25dbab87f7890562d49c9e1fd914b8fc-cbe53-zh7sv] [684_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0016' from sub-workflow 'CallGenome'
[2026-06-05T14:00:03.271942Z] [nf-25dbab87f7890562d49c9e1fd914b8fc-cbe53-zh7sv] [684_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0016] Task initiated on local node
[2026-06-05T14:00:03.734779Z] [nf-25dbab87f7890562d49c9e1fd914b8fc-cbe53-zh7sv] [684_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0019' launched from sub-workflow 'CallGenome'
[2026-06-05T14:00:03.735733Z] [nf-25dbab87f7890562d49c9e1fd914b8fc-cbe53-zh7sv] [684_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0002' from sub-workflow 'CallGenome'
[2026-06-05T14:00:03.739822Z] [nf-25dbab87f7890562d49c9e1fd914b8fc-cbe53-zh7sv] [684_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0002] Task initiated on local node
[2026-06-05T14:00:03.901352Z] [nf-25dbab87f7890562d49c9e1fd914b8fc-cbe53-zh7sv] [684_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0011' launched from sub-workflow 'CallGenome'
[2026-06-05T14:00:03.902387Z] [nf-25dbab87f7890562d49c9e1fd914b8fc-cbe53-zh7sv] [684_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_019_chr20_0004' from sub-workflow 'CallGenome'
[2026-06-05T14:00:03.906423Z] [nf-25dbab87f7890562d49c9e1fd914b8fc-cbe53-zh7sv] [684_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_019_chr20_0004] Task initiated on local node
[2026-06-05T14:00:03.967682Z] [nf-25dbab87f7890562d49c9e1fd914b8fc-cbe53-zh7sv] [684_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_019_chr20_0004' launched from sub-workflow 'CallGenome'
[2026-06-05T14:00:03.968792Z] [nf-25dbab87f7890562d49c9e1fd914b8fc-cbe53-zh7sv] [684_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_019_chr20_0002' from sub-workflow 'CallGenome'
[2026-06-05T14:00:03.972874Z] [nf-25dbab87f7890562d49c9e1fd914b8fc-cbe53-zh7sv] [684_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_019_chr20_0002] Task initiated on local node
[2026-06-05T14:00:04.033807Z] [nf-25dbab87f7890562d49c9e1fd914b8fc-cbe53-zh7sv] [684_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_019_chr20_0002' launched from sub-workflow 'CallGenome'
[2026-06-05T14:00:04.034753Z] [nf-25dbab87f7890562d49c9e1fd914b8fc-cbe53-zh7sv] [684_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0009' from sub-workflow 'CallGenome'
[2026-06-05T14:00:04.039015Z] [nf-25dbab87f7890562d49c9e1fd914b8fc-cbe53-zh7sv] [684_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0009] Task initiated on local node
[2026-06-05T14:00:04.100471Z] [nf-25dbab87f7890562d49c9e1fd914b8fc-cbe53-zh7sv] [684_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0003' launched from sub-workflow 'CallGenome'
[2026-06-05T14:00:04.101459Z] [nf-25dbab87f7890562d49c9e1fd914b8fc-cbe53-zh7sv] [684_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0020' from sub-workflow 'CallGenome'
[2026-06-05T14:00:04.105364Z] [nf-25dbab87f7890562d49c9e1fd914b8fc-cbe53-zh7sv] [684_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0020] Task initiated on local node
[2026-06-05T14:00:04.266862Z] [nf-25dbab87f7890562d49c9e1fd914b8fc-cbe53-zh7sv] [684_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_019_chr20_0000' launched from sub-workflow 'CallGenome'
[2026-06-05T14:00:04.267940Z] [nf-25dbab87f7890562d49c9e1fd914b8fc-cbe53-zh7sv] [684_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0012' from sub-workflow 'CallGenome'
[2026-06-05T14:00:04.271889Z] [nf-25dbab87f7890562d49c9e1fd914b8fc-cbe53-zh7sv] [684_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0012] Task initiated on local node
[2026-06-05T14:00:04.433607Z] [nf-25dbab87f7890562d49c9e1fd914b8fc-cbe53-zh7sv] [684_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0014' launched from sub-workflow 'CallGenome'
[2026-06-05T14:00:04.434700Z] [nf-25dbab87f7890562d49c9e1fd914b8fc-cbe53-zh7sv] [684_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0019' from sub-workflow 'CallGenome'
[2026-06-05T14:00:04.438841Z] [nf-25dbab87f7890562d49c9e1fd914b8fc-cbe53-zh7sv] [684_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0019] Task initiated on local node
[2026-06-05T14:00:04.500102Z] [nf-25dbab87f7890562d49c9e1fd914b8fc-cbe53-zh7sv] [684_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0019' launched from sub-workflow 'CallGenome'
[2026-06-05T14:00:04.501116Z] [nf-25dbab87f7890562d49c9e1fd914b8fc-cbe53-zh7sv] [684_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0014' from sub-workflow 'CallGenome'
[2026-06-05T14:00:04.504842Z] [nf-25dbab87f7890562d49c9e1fd914b8fc-cbe53-zh7sv] [684_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0014] Task initiated on local node
[2026-06-05T14:00:04.566004Z] [nf-25dbab87f7890562d49c9e1fd914b8fc-cbe53-zh7sv] [684_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0014' launched from sub-workflow 'CallGenome'
[2026-06-05T14:00:04.566154Z] [nf-25dbab87f7890562d49c9e1fd914b8fc-cbe53-zh7sv] [684_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0016' launched from sub-workflow 'CallGenome'
[2026-06-05T14:00:04.567036Z] [nf-25dbab87f7890562d49c9e1fd914b8fc-cbe53-zh7sv] [684_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0003' from sub-workflow 'CallGenome'
[2026-06-05T14:00:04.567622Z] [nf-25dbab87f7890562d49c9e1fd914b8fc-cbe53-zh7sv] [684_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_019_chr20_0005' from sub-workflow 'CallGenome'
[2026-06-05T14:00:04.571436Z] [nf-25dbab87f7890562d49c9e1fd914b8fc-cbe53-zh7sv] [684_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0003] Task initiated on local node
[2026-06-05T14:00:04.605850Z] [nf-25dbab87f7890562d49c9e1fd914b8fc-cbe53-zh7sv] [684_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_019_chr20_0005] Task initiated on local node
[2026-06-05T14:00:04.633030Z] [nf-25dbab87f7890562d49c9e1fd914b8fc-cbe53-zh7sv] [684_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_019_chr20_0005' launched from sub-workflow 'CallGenome'
[2026-06-05T14:00:04.633161Z] [nf-25dbab87f7890562d49c9e1fd914b8fc-cbe53-zh7sv] [684_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0003' launched from sub-workflow 'CallGenome'
[2026-06-05T14:00:04.634075Z] [nf-25dbab87f7890562d49c9e1fd914b8fc-cbe53-zh7sv] [684_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0008' from sub-workflow 'CallGenome'
[2026-06-05T14:00:04.634547Z] [nf-25dbab87f7890562d49c9e1fd914b8fc-cbe53-zh7sv] [684_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0013' from sub-workflow 'CallGenome'
[2026-06-05T14:00:04.639569Z] [nf-25dbab87f7890562d49c9e1fd914b8fc-cbe53-zh7sv] [684_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0008] Task initiated on local node
[2026-06-05T14:00:04.640777Z] [nf-25dbab87f7890562d49c9e1fd914b8fc-cbe53-zh7sv] [684_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0013] Task initiated on local node
[2026-06-05T14:00:04.652902Z] [nf-25dbab87f7890562d49c9e1fd914b8fc-cbe53-zh7sv] [684_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0017' launched from sub-workflow 'CallGenome'
[2026-06-05T14:00:04.653759Z] [nf-25dbab87f7890562d49c9e1fd914b8fc-cbe53-zh7sv] [684_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0007' from sub-workflow 'CallGenome'
[2026-06-05T14:00:04.657003Z] [nf-25dbab87f7890562d49c9e1fd914b8fc-cbe53-zh7sv] [684_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0007] Task initiated on local node
[2026-06-05T14:00:05.320329Z] [nf-25dbab87f7890562d49c9e1fd914b8fc-cbe53-zh7sv] [684_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0012' launched from sub-workflow 'CallGenome'
[2026-06-05T14:00:05.321817Z] [nf-25dbab87f7890562d49c9e1fd914b8fc-cbe53-zh7sv] [684_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0016' from sub-workflow 'CallGenome'
[2026-06-05T14:00:05.325718Z] [nf-25dbab87f7890562d49c9e1fd914b8fc-cbe53-zh7sv] [684_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0016] Task initiated on local node
[2026-06-05T14:00:05.386976Z] [nf-25dbab87f7890562d49c9e1fd914b8fc-cbe53-zh7sv] [684_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0016' launched from sub-workflow 'CallGenome'
[2026-06-05T14:00:05.388203Z] [nf-25dbab87f7890562d49c9e1fd914b8fc-cbe53-zh7sv] [684_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_019_chr20_0002' from sub-workflow 'CallGenome'
[2026-06-05T14:00:05.392571Z] [nf-25dbab87f7890562d49c9e1fd914b8fc-cbe53-zh7sv] [684_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_019_chr20_0002] Task initiated on local node
[2026-06-05T14:00:05.453137Z] [nf-25dbab87f7890562d49c9e1fd914b8fc-cbe53-zh7sv] [684_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_019_chr20_0002' launched from sub-workflow 'CallGenome'
[2026-06-05T14:00:05.454302Z] [nf-25dbab87f7890562d49c9e1fd914b8fc-cbe53-zh7sv] [684_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_018_chr19_0001' from sub-workflow 'CallGenome'
[2026-06-05T14:00:05.458186Z] [nf-25dbab87f7890562d49c9e1fd914b8fc-cbe53-zh7sv] [684_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_018_chr19_0001] Task initiated on local node
[2026-06-05T14:00:05.921172Z] [nf-25dbab87f7890562d49c9e1fd914b8fc-cbe53-zh7sv] [684_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0007' launched from sub-workflow 'CallGenome'
[2026-06-05T14:00:05.922169Z] [nf-25dbab87f7890562d49c9e1fd914b8fc-cbe53-zh7sv] [684_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_019_chr20_0001' from sub-workflow 'CallGenome'
[2026-06-05T14:00:05.926810Z] [nf-25dbab87f7890562d49c9e1fd914b8fc-cbe53-zh7sv] [684_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_019_chr20_0001] Task initiated on local node
[2026-06-05T14:00:06.187951Z] [nf-25dbab87f7890562d49c9e1fd914b8fc-cbe53-zh7sv] [684_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0013' launched from sub-workflow 'CallGenome'
[2026-06-05T14:00:06.189444Z] [nf-25dbab87f7890562d49c9e1fd914b8fc-cbe53-zh7sv] [684_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_018_chr19_0004' from sub-workflow 'CallGenome'
[2026-06-05T14:00:06.189968Z] [nf-25dbab87f7890562d49c9e1fd914b8fc-cbe53-zh7sv] [684_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_018_chr19_0003' launched from sub-workflow 'CallGenome'
[2026-06-05T14:00:06.191410Z] [nf-25dbab87f7890562d49c9e1fd914b8fc-cbe53-zh7sv] [684_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_018_chr19_0003' from sub-workflow 'CallGenome'
[2026-06-05T14:00:06.195205Z] [nf-25dbab87f7890562d49c9e1fd914b8fc-cbe53-zh7sv] [684_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_018_chr19_0004] Task initiated on local node
[2026-06-05T14:00:06.195991Z] [nf-25dbab87f7890562d49c9e1fd914b8fc-cbe53-zh7sv] [684_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_018_chr19_0003] Task initiated on local node
[2026-06-05T14:00:06.256279Z] [nf-25dbab87f7890562d49c9e1fd914b8fc-cbe53-zh7sv] [684_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_018_chr19_0003' launched from sub-workflow 'CallGenome'
[2026-06-05T14:00:06.257141Z] [nf-25dbab87f7890562d49c9e1fd914b8fc-cbe53-zh7sv] [684_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0018' from sub-workflow 'CallGenome'
[2026-06-05T14:00:06.261278Z] [nf-25dbab87f7890562d49c9e1fd914b8fc-cbe53-zh7sv] [684_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0018] Task initiated on local node
[2026-06-05T14:00:06.422878Z] [nf-25dbab87f7890562d49c9e1fd914b8fc-cbe53-zh7sv] [684_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_019_chr20_0001' launched from sub-workflow 'CallGenome'
[2026-06-05T14:00:06.423769Z] [nf-25dbab87f7890562d49c9e1fd914b8fc-cbe53-zh7sv] [684_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_019_chr20_0001' from sub-workflow 'CallGenome'
[2026-06-05T14:00:06.427164Z] [nf-25dbab87f7890562d49c9e1fd914b8fc-cbe53-zh7sv] [684_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_019_chr20_0001] Task initiated on local node
[2026-06-05T14:00:06.488496Z] [nf-25dbab87f7890562d49c9e1fd914b8fc-cbe53-zh7sv] [684_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_019_chr20_0001' launched from sub-workflow 'CallGenome'
[2026-06-05T14:00:06.489329Z] [nf-25dbab87f7890562d49c9e1fd914b8fc-cbe53-zh7sv] [684_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0007' from sub-workflow 'CallGenome'
[2026-06-05T14:00:06.492863Z] [nf-25dbab87f7890562d49c9e1fd914b8fc-cbe53-zh7sv] [684_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0007] Task initiated on local node
[2026-06-05T14:00:06.554053Z] [nf-25dbab87f7890562d49c9e1fd914b8fc-cbe53-zh7sv] [684_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0007' launched from sub-workflow 'CallGenome'
[2026-06-05T14:00:06.554939Z] [nf-25dbab87f7890562d49c9e1fd914b8fc-cbe53-zh7sv] [684_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_019_chr20_0000' from sub-workflow 'CallGenome'
[2026-06-05T14:00:06.558426Z] [nf-25dbab87f7890562d49c9e1fd914b8fc-cbe53-zh7sv] [684_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_019_chr20_0000] Task initiated on local node
[2026-06-05T14:00:06.620094Z] [nf-25dbab87f7890562d49c9e1fd914b8fc-cbe53-zh7sv] [684_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_019_chr20_0000' launched from sub-workflow 'CallGenome'
[2026-06-05T14:00:06.620878Z] [nf-25dbab87f7890562d49c9e1fd914b8fc-cbe53-zh7sv] [684_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0006' from sub-workflow 'CallGenome'
[2026-06-05T14:00:06.624614Z] [nf-25dbab87f7890562d49c9e1fd914b8fc-cbe53-zh7sv] [684_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0006] Task initiated on local node
[2026-06-05T14:00:06.736093Z] [nf-25dbab87f7890562d49c9e1fd914b8fc-cbe53-zh7sv] [684_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0008' launched from sub-workflow 'CallGenome'
[2026-06-05T14:00:06.736966Z] [nf-25dbab87f7890562d49c9e1fd914b8fc-cbe53-zh7sv] [684_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0000' from sub-workflow 'CallGenome'
[2026-06-05T14:00:06.740522Z] [nf-25dbab87f7890562d49c9e1fd914b8fc-cbe53-zh7sv] [684_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0000] Task initiated on local node
[2026-06-05T14:00:06.952181Z] [nf-25dbab87f7890562d49c9e1fd914b8fc-cbe53-zh7sv] [684_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0009' launched from sub-workflow 'CallGenome'
[2026-06-05T14:00:06.952303Z] [nf-25dbab87f7890562d49c9e1fd914b8fc-cbe53-zh7sv] [684_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0020' launched from sub-workflow 'CallGenome'
[2026-06-05T14:00:06.953326Z] [nf-25dbab87f7890562d49c9e1fd914b8fc-cbe53-zh7sv] [684_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0009' from sub-workflow 'CallGenome'
[2026-06-05T14:00:06.953722Z] [nf-25dbab87f7890562d49c9e1fd914b8fc-cbe53-zh7sv] [684_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_019_chr20_0004' from sub-workflow 'CallGenome'
[2026-06-05T14:00:06.957286Z] [nf-25dbab87f7890562d49c9e1fd914b8fc-cbe53-zh7sv] [684_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0009] Task initiated on local node
[2026-06-05T14:00:06.958463Z] [nf-25dbab87f7890562d49c9e1fd914b8fc-cbe53-zh7sv] [684_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_019_chr20_0004] Task initiated on local node
[2026-06-05T14:00:07.018840Z] [nf-25dbab87f7890562d49c9e1fd914b8fc-cbe53-zh7sv] [684_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_019_chr20_0004' launched from sub-workflow 'CallGenome'
[2026-06-05T14:00:07.018957Z] [nf-25dbab87f7890562d49c9e1fd914b8fc-cbe53-zh7sv] [684_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0002' launched from sub-workflow 'CallGenome'
[2026-06-05T14:00:07.018996Z] [nf-25dbab87f7890562d49c9e1fd914b8fc-cbe53-zh7sv] [684_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0009' launched from sub-workflow 'CallGenome'
[2026-06-05T14:00:07.019738Z] [nf-25dbab87f7890562d49c9e1fd914b8fc-cbe53-zh7sv] [684_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0013' from sub-workflow 'CallGenome'
[2026-06-05T14:00:07.020166Z] [nf-25dbab87f7890562d49c9e1fd914b8fc-cbe53-zh7sv] [684_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0005' from sub-workflow 'CallGenome'
[2026-06-05T14:00:07.020867Z] [nf-25dbab87f7890562d49c9e1fd914b8fc-cbe53-zh7sv] [684_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0015' from sub-workflow 'CallGenome'
[2026-06-05T14:00:07.025155Z] [nf-25dbab87f7890562d49c9e1fd914b8fc-cbe53-zh7sv] [684_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0013] Task initiated on local node
[2026-06-05T14:00:07.026846Z] [nf-25dbab87f7890562d49c9e1fd914b8fc-cbe53-zh7sv] [684_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0005] Task initiated on local node
[2026-06-05T14:00:07.028032Z] [nf-25dbab87f7890562d49c9e1fd914b8fc-cbe53-zh7sv] [684_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0015] Task initiated on local node
[2026-06-05T14:00:07.088059Z] [nf-25dbab87f7890562d49c9e1fd914b8fc-cbe53-zh7sv] [684_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0013' launched from sub-workflow 'CallGenome'
[2026-06-05T14:00:07.088864Z] [nf-25dbab87f7890562d49c9e1fd914b8fc-cbe53-zh7sv] [684_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0001' from sub-workflow 'CallGenome'
[2026-06-05T14:00:07.092453Z] [nf-25dbab87f7890562d49c9e1fd914b8fc-cbe53-zh7sv] [684_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0001] Task initiated on local node
[2026-06-05T14:00:08.007683Z] [nf-25dbab87f7890562d49c9e1fd914b8fc-cbe53-zh7sv] [684_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_018_chr19_0001' launched from sub-workflow 'CallGenome'
[2026-06-05T14:00:08.008491Z] [nf-25dbab87f7890562d49c9e1fd914b8fc-cbe53-zh7sv] [684_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_018_chr19_0001' from sub-workflow 'CallGenome'
[2026-06-05T14:00:08.012551Z] [nf-25dbab87f7890562d49c9e1fd914b8fc-cbe53-zh7sv] [684_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_018_chr19_0001] Task initiated on local node
[2026-06-05T14:00:08.073624Z] [nf-25dbab87f7890562d49c9e1fd914b8fc-cbe53-zh7sv] [684_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_018_chr19_0001' launched from sub-workflow 'CallGenome'
[2026-06-05T14:00:08.074436Z] [nf-25dbab87f7890562d49c9e1fd914b8fc-cbe53-zh7sv] [684_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0010' from sub-workflow 'CallGenome'
[2026-06-05T14:00:08.077919Z] [nf-25dbab87f7890562d49c9e1fd914b8fc-cbe53-zh7sv] [684_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0010] Task initiated on local node
[2026-06-05T14:00:08.107261Z] [nf-25dbab87f7890562d49c9e1fd914b8fc-cbe53-zh7sv] [684_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0018' launched from sub-workflow 'CallGenome'
[2026-06-05T14:00:08.107401Z] [nf-25dbab87f7890562d49c9e1fd914b8fc-cbe53-zh7sv] [684_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0001' launched from sub-workflow 'CallGenome'
[2026-06-05T14:00:08.108101Z] [nf-25dbab87f7890562d49c9e1fd914b8fc-cbe53-zh7sv] [684_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0001' from sub-workflow 'CallGenome'
[2026-06-05T14:00:08.108505Z] [nf-25dbab87f7890562d49c9e1fd914b8fc-cbe53-zh7sv] [684_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_019_chr20_0003' from sub-workflow 'CallGenome'
[2026-06-05T14:00:08.112390Z] [nf-25dbab87f7890562d49c9e1fd914b8fc-cbe53-zh7sv] [684_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0001] Task initiated on local node
[2026-06-05T14:00:08.113601Z] [nf-25dbab87f7890562d49c9e1fd914b8fc-cbe53-zh7sv] [684_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_019_chr20_0003] Task initiated on local node
[2026-06-05T14:00:08.173962Z] [nf-25dbab87f7890562d49c9e1fd914b8fc-cbe53-zh7sv] [684_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0001' launched from sub-workflow 'CallGenome'
[2026-06-05T14:00:08.174066Z] [nf-25dbab87f7890562d49c9e1fd914b8fc-cbe53-zh7sv] [684_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_019_chr20_0003' launched from sub-workflow 'CallGenome'
[2026-06-05T14:00:08.174746Z] [nf-25dbab87f7890562d49c9e1fd914b8fc-cbe53-zh7sv] [684_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_019_chr20_0003' from sub-workflow 'CallGenome'
[2026-06-05T14:00:08.175384Z] [nf-25dbab87f7890562d49c9e1fd914b8fc-cbe53-zh7sv] [684_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0012' from sub-workflow 'CallGenome'
[2026-06-05T14:00:08.178928Z] [nf-25dbab87f7890562d49c9e1fd914b8fc-cbe53-zh7sv] [684_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_019_chr20_0003] Task initiated on local node
[2026-06-05T14:00:08.180136Z] [nf-25dbab87f7890562d49c9e1fd914b8fc-cbe53-zh7sv] [684_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0012] Task initiated on local node
[2026-06-05T14:00:08.241373Z] [nf-25dbab87f7890562d49c9e1fd914b8fc-cbe53-zh7sv] [684_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0000' launched from sub-workflow 'CallGenome'
[2026-06-05T14:00:08.241494Z] [nf-25dbab87f7890562d49c9e1fd914b8fc-cbe53-zh7sv] [684_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0012' launched from sub-workflow 'CallGenome'
[2026-06-05T14:00:08.241526Z] [nf-25dbab87f7890562d49c9e1fd914b8fc-cbe53-zh7sv] [684_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_019_chr20_0003' launched from sub-workflow 'CallGenome'
[2026-06-05T14:00:08.242198Z] [nf-25dbab87f7890562d49c9e1fd914b8fc-cbe53-zh7sv] [684_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0018' from sub-workflow 'CallGenome'
[2026-06-05T14:00:08.242673Z] [nf-25dbab87f7890562d49c9e1fd914b8fc-cbe53-zh7sv] [684_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_018_chr19_0000' from sub-workflow 'CallGenome'
[2026-06-05T14:00:08.245328Z] [nf-25dbab87f7890562d49c9e1fd914b8fc-cbe53-zh7sv] [684_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0020' from sub-workflow 'CallGenome'
[2026-06-05T14:00:08.248977Z] [nf-25dbab87f7890562d49c9e1fd914b8fc-cbe53-zh7sv] [684_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0018] Task initiated on local node
[2026-06-05T14:00:08.249273Z] [nf-25dbab87f7890562d49c9e1fd914b8fc-cbe53-zh7sv] [684_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_018_chr19_0000] Task initiated on local node
[2026-06-05T14:00:08.278695Z] [nf-25dbab87f7890562d49c9e1fd914b8fc-cbe53-zh7sv] [684_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0018' launched from sub-workflow 'CallGenome'
[2026-06-05T14:00:08.279362Z] [nf-25dbab87f7890562d49c9e1fd914b8fc-cbe53-zh7sv] [684_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0008' from sub-workflow 'CallGenome'
[2026-06-05T14:00:08.282577Z] [nf-25dbab87f7890562d49c9e1fd914b8fc-cbe53-zh7sv] [684_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0008] Task initiated on local node
[2026-06-05T14:00:08.283290Z] [nf-25dbab87f7890562d49c9e1fd914b8fc-cbe53-zh7sv] [684_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0020] Task initiated on local node
[2026-06-05T14:00:08.287436Z] [nf-25dbab87f7890562d49c9e1fd914b8fc-cbe53-zh7sv] [684_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0020' launched from sub-workflow 'CallGenome'
[2026-06-05T14:00:08.287511Z] [nf-25dbab87f7890562d49c9e1fd914b8fc-cbe53-zh7sv] [684_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_018_chr19_0000' launched from sub-workflow 'CallGenome'
[2026-06-05T14:00:08.288043Z] [nf-25dbab87f7890562d49c9e1fd914b8fc-cbe53-zh7sv] [684_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0002' from sub-workflow 'CallGenome'
[2026-06-05T14:00:08.288543Z] [nf-25dbab87f7890562d49c9e1fd914b8fc-cbe53-zh7sv] [684_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0017' from sub-workflow 'CallGenome'
[2026-06-05T14:00:08.293150Z] [nf-25dbab87f7890562d49c9e1fd914b8fc-cbe53-zh7sv] [684_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0002] Task initiated on local node
[2026-06-05T14:00:08.294494Z] [nf-25dbab87f7890562d49c9e1fd914b8fc-cbe53-zh7sv] [684_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0017] Task initiated on local node
[2026-06-05T14:00:08.321704Z] [nf-25dbab87f7890562d49c9e1fd914b8fc-cbe53-zh7sv] [684_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0008' launched from sub-workflow 'CallGenome'
[2026-06-05T14:00:08.322356Z] [nf-25dbab87f7890562d49c9e1fd914b8fc-cbe53-zh7sv] [684_1] [TaskManager] Launching command task: 'CallGenome+fixVcfHeader_chromId_001_chr2_0000' from sub-workflow 'CallGenome'
[2026-06-05T14:00:08.325667Z] [nf-25dbab87f7890562d49c9e1fd914b8fc-cbe53-zh7sv] [684_1] [TaskRunner:CallGenome+fixVcfHeader_chromId_001_chr2_0000] Task initiated on local node
[2026-06-05T14:00:08.330413Z] [nf-25dbab87f7890562d49c9e1fd914b8fc-cbe53-zh7sv] [684_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0002' launched from sub-workflow 'CallGenome'
[2026-06-05T14:00:08.330471Z] [nf-25dbab87f7890562d49c9e1fd914b8fc-cbe53-zh7sv] [684_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0017' launched from sub-workflow 'CallGenome'
[2026-06-05T14:00:08.330902Z] [nf-25dbab87f7890562d49c9e1fd914b8fc-cbe53-zh7sv] [684_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_018_chr19_0002' from sub-workflow 'CallGenome'
[2026-06-05T14:00:08.331455Z] [nf-25dbab87f7890562d49c9e1fd914b8fc-cbe53-zh7sv] [684_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0004' from sub-workflow 'CallGenome'
[2026-06-05T14:00:08.335244Z] [nf-25dbab87f7890562d49c9e1fd914b8fc-cbe53-zh7sv] [684_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_018_chr19_0002] Task initiated on local node
[2026-06-05T14:00:08.336364Z] [nf-25dbab87f7890562d49c9e1fd914b8fc-cbe53-zh7sv] [684_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0004] Task initiated on local node
[2026-06-05T14:00:08.396637Z] [nf-25dbab87f7890562d49c9e1fd914b8fc-cbe53-zh7sv] [684_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_018_chr19_0002' launched from sub-workflow 'CallGenome'
[2026-06-05T14:00:08.396765Z] [nf-25dbab87f7890562d49c9e1fd914b8fc-cbe53-zh7sv] [684_1] [TaskManager] Completed command task: 'CallGenome+fixVcfHeader_chromId_001_chr2_0000' launched from sub-workflow 'CallGenome'
[2026-06-05T14:00:08.397395Z] [nf-25dbab87f7890562d49c9e1fd914b8fc-cbe53-zh7sv] [684_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0000' from sub-workflow 'CallGenome'
[2026-06-05T14:00:08.397932Z] [nf-25dbab87f7890562d49c9e1fd914b8fc-cbe53-zh7sv] [684_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0011' from sub-workflow 'CallGenome'
[2026-06-05T14:00:08.402358Z] [nf-25dbab87f7890562d49c9e1fd914b8fc-cbe53-zh7sv] [684_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0011] Task initiated on local node
[2026-06-05T14:00:08.403422Z] [nf-25dbab87f7890562d49c9e1fd914b8fc-cbe53-zh7sv] [684_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0000] Task initiated on local node
[2026-06-05T14:00:08.463312Z] [nf-25dbab87f7890562d49c9e1fd914b8fc-cbe53-zh7sv] [684_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0000' launched from sub-workflow 'CallGenome'
[2026-06-05T14:00:08.463459Z] [nf-25dbab87f7890562d49c9e1fd914b8fc-cbe53-zh7sv] [684_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0011' launched from sub-workflow 'CallGenome'
[2026-06-05T14:00:08.527960Z] [nf-25dbab87f7890562d49c9e1fd914b8fc-cbe53-zh7sv] [684_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0005' launched from sub-workflow 'CallGenome'
[2026-06-05T14:00:08.528601Z] [nf-25dbab87f7890562d49c9e1fd914b8fc-cbe53-zh7sv] [684_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0005' from sub-workflow 'CallGenome'
[2026-06-05T14:00:08.532561Z] [nf-25dbab87f7890562d49c9e1fd914b8fc-cbe53-zh7sv] [684_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0005] Task initiated on local node
[2026-06-05T14:00:08.533091Z] [nf-25dbab87f7890562d49c9e1fd914b8fc-cbe53-zh7sv] [684_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0006' launched from sub-workflow 'CallGenome'
[2026-06-05T14:00:08.533541Z] [nf-25dbab87f7890562d49c9e1fd914b8fc-cbe53-zh7sv] [684_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0006' from sub-workflow 'CallGenome'
[2026-06-05T14:00:08.536780Z] [nf-25dbab87f7890562d49c9e1fd914b8fc-cbe53-zh7sv] [684_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0006] Task initiated on local node
[2026-06-05T14:00:08.566295Z] [nf-25dbab87f7890562d49c9e1fd914b8fc-cbe53-zh7sv] [684_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0005' launched from sub-workflow 'CallGenome'
[2026-06-05T14:00:08.570137Z] [nf-25dbab87f7890562d49c9e1fd914b8fc-cbe53-zh7sv] [684_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0006' launched from sub-workflow 'CallGenome'
[2026-06-05T14:00:08.784644Z] [nf-25dbab87f7890562d49c9e1fd914b8fc-cbe53-zh7sv] [684_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0015' launched from sub-workflow 'CallGenome'
[2026-06-05T14:00:08.785251Z] [nf-25dbab87f7890562d49c9e1fd914b8fc-cbe53-zh7sv] [684_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0015' from sub-workflow 'CallGenome'
[2026-06-05T14:00:08.788767Z] [nf-25dbab87f7890562d49c9e1fd914b8fc-cbe53-zh7sv] [684_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0015] Task initiated on local node
[2026-06-05T14:00:08.850067Z] [nf-25dbab87f7890562d49c9e1fd914b8fc-cbe53-zh7sv] [684_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0015' launched from sub-workflow 'CallGenome'
[2026-06-05T14:00:09.114971Z] [nf-25dbab87f7890562d49c9e1fd914b8fc-cbe53-zh7sv] [684_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0010' launched from sub-workflow 'CallGenome'
[2026-06-05T14:00:09.115535Z] [nf-25dbab87f7890562d49c9e1fd914b8fc-cbe53-zh7sv] [684_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0010' from sub-workflow 'CallGenome'
[2026-06-05T14:00:09.119585Z] [nf-25dbab87f7890562d49c9e1fd914b8fc-cbe53-zh7sv] [684_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0010] Task initiated on local node
[2026-06-05T14:00:09.180438Z] [nf-25dbab87f7890562d49c9e1fd914b8fc-cbe53-zh7sv] [684_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0010' launched from sub-workflow 'CallGenome'
[2026-06-05T14:00:09.846712Z] [nf-25dbab87f7890562d49c9e1fd914b8fc-cbe53-zh7sv] [684_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0004' launched from sub-workflow 'CallGenome'
[2026-06-05T14:00:09.847287Z] [nf-25dbab87f7890562d49c9e1fd914b8fc-cbe53-zh7sv] [684_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0004' from sub-workflow 'CallGenome'
[2026-06-05T14:00:09.850789Z] [nf-25dbab87f7890562d49c9e1fd914b8fc-cbe53-zh7sv] [684_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0004] Task initiated on local node
[2026-06-05T14:00:09.911854Z] [nf-25dbab87f7890562d49c9e1fd914b8fc-cbe53-zh7sv] [684_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0004' launched from sub-workflow 'CallGenome'
[2026-06-05T14:00:10.126375Z] [nf-25dbab87f7890562d49c9e1fd914b8fc-cbe53-zh7sv] [684_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_018_chr19_0004' launched from sub-workflow 'CallGenome'
[2026-06-05T14:00:10.126893Z] [nf-25dbab87f7890562d49c9e1fd914b8fc-cbe53-zh7sv] [684_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_018_chr19_0004' from sub-workflow 'CallGenome'
[2026-06-05T14:00:10.130832Z] [nf-25dbab87f7890562d49c9e1fd914b8fc-cbe53-zh7sv] [684_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_018_chr19_0004] Task initiated on local node
[2026-06-05T14:00:10.191628Z] [nf-25dbab87f7890562d49c9e1fd914b8fc-cbe53-zh7sv] [684_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_018_chr19_0004' launched from sub-workflow 'CallGenome'
[2026-06-05T14:00:10.191974Z] [nf-25dbab87f7890562d49c9e1fd914b8fc-cbe53-zh7sv] [684_1] [TaskManager] Completed command task: 'CallGenome+completedAllGenomeSegments' launched from sub-workflow 'CallGenome'
[2026-06-05T14:00:10.192152Z] [nf-25dbab87f7890562d49c9e1fd914b8fc-cbe53-zh7sv] [684_1] [TaskManager] Launching command task: 'CallGenome+mergeRunStats' from sub-workflow 'CallGenome'
[2026-06-05T14:00:10.192667Z] [nf-25dbab87f7890562d49c9e1fd914b8fc-cbe53-zh7sv] [684_1] [TaskManager] Launching command task: 'CallGenome+SNV_concat_vcf' from sub-workflow 'CallGenome'
[2026-06-05T14:00:10.193556Z] [nf-25dbab87f7890562d49c9e1fd914b8fc-cbe53-zh7sv] [684_1] [TaskManager] Launching command task: 'CallGenome+Indel_concat_vcf' from sub-workflow 'CallGenome'
[2026-06-05T14:00:10.200900Z] [nf-25dbab87f7890562d49c9e1fd914b8fc-cbe53-zh7sv] [684_1] [TaskRunner:CallGenome+Indel_concat_vcf] Task initiated on local node
[2026-06-05T14:00:10.201211Z] [nf-25dbab87f7890562d49c9e1fd914b8fc-cbe53-zh7sv] [684_1] [TaskRunner:CallGenome+SNV_concat_vcf] Task initiated on local node
[2026-06-05T14:00:10.202102Z] [nf-25dbab87f7890562d49c9e1fd914b8fc-cbe53-zh7sv] [684_1] [TaskRunner:CallGenome+mergeRunStats] Task initiated on local node
[2026-06-05T14:00:10.226683Z] [nf-25dbab87f7890562d49c9e1fd914b8fc-cbe53-zh7sv] [684_1] [TaskManager] Completed command task: 'CallGenome+Indel_concat_vcf' launched from sub-workflow 'CallGenome'
[2026-06-05T14:00:10.226987Z] [nf-25dbab87f7890562d49c9e1fd914b8fc-cbe53-zh7sv] [684_1] [TaskManager] Launching command task: 'CallGenome+Indel_index_vcf' from sub-workflow 'CallGenome'
[2026-06-05T14:00:10.230321Z] [nf-25dbab87f7890562d49c9e1fd914b8fc-cbe53-zh7sv] [684_1] [TaskRunner:CallGenome+Indel_index_vcf] Task initiated on local node
[2026-06-05T14:00:10.235239Z] [nf-25dbab87f7890562d49c9e1fd914b8fc-cbe53-zh7sv] [684_1] [TaskManager] Completed command task: 'CallGenome+mergeRunStats' launched from sub-workflow 'CallGenome'
[2026-06-05T14:00:10.235307Z] [nf-25dbab87f7890562d49c9e1fd914b8fc-cbe53-zh7sv] [684_1] [TaskManager] Completed command task: 'CallGenome+SNV_concat_vcf' launched from sub-workflow 'CallGenome'
[2026-06-05T14:00:10.235522Z] [nf-25dbab87f7890562d49c9e1fd914b8fc-cbe53-zh7sv] [684_1] [TaskManager] Launching command task: 'CallGenome+SNV_index_vcf' from sub-workflow 'CallGenome'
[2026-06-05T14:00:10.238410Z] [nf-25dbab87f7890562d49c9e1fd914b8fc-cbe53-zh7sv] [684_1] [TaskRunner:CallGenome+SNV_index_vcf] Task initiated on local node
[2026-06-05T14:00:10.267624Z] [nf-25dbab87f7890562d49c9e1fd914b8fc-cbe53-zh7sv] [684_1] [TaskManager] Completed command task: 'CallGenome+Indel_index_vcf' launched from sub-workflow 'CallGenome'
[2026-06-05T14:00:10.267714Z] [nf-25dbab87f7890562d49c9e1fd914b8fc-cbe53-zh7sv] [684_1] [TaskManager] Completed command task: 'CallGenome+SNV_index_vcf' launched from sub-workflow 'CallGenome'
[2026-06-05T14:00:10.267979Z] [nf-25dbab87f7890562d49c9e1fd914b8fc-cbe53-zh7sv] [684_1] [TaskManager] Launching command task: 'CallGenome+removeTmpDir' from sub-workflow 'CallGenome'
[2026-06-05T14:00:10.270955Z] [nf-25dbab87f7890562d49c9e1fd914b8fc-cbe53-zh7sv] [684_1] [TaskRunner:CallGenome+removeTmpDir] Task initiated on local node
[2026-06-05T14:00:10.300164Z] [nf-25dbab87f7890562d49c9e1fd914b8fc-cbe53-zh7sv] [684_1] [TaskManager] Completed command task: 'CallGenome+removeTmpDir' launched from sub-workflow 'CallGenome'
[2026-06-05T14:00:12.469355Z] [nf-25dbab87f7890562d49c9e1fd914b8fc-cbe53-zh7sv] [684_1] [TaskManager] Completed sub-workflow task: 'CallGenome' launched from master workflow
[2026-06-05T14:00:20.747297Z] [nf-25dbab87f7890562d49c9e1fd914b8fc-cbe53-zh7sv] [684_1] [WorkflowRunner] Strelka somatic workflow successfully completed.
[2026-06-05T14:00:20.747297Z] [nf-25dbab87f7890562d49c9e1fd914b8fc-cbe53-zh7sv] [684_1] [WorkflowRunner] 
[2026-06-05T14:00:20.747297Z] [nf-25dbab87f7890562d49c9e1fd914b8fc-cbe53-zh7sv] [684_1] [WorkflowRunner] 	workflow version: 2.9.10
[2026-06-05T14:00:20.747375Z] [nf-25dbab87f7890562d49c9e1fd914b8fc-cbe53-zh7sv] [684_1] [WorkflowRunner] 
[2026-06-05T14:00:20.747385Z] [nf-25dbab87f7890562d49c9e1fd914b8fc-cbe53-zh7sv] [684_1] [WorkflowRunner] Workflow successfully completed all tasks
[2026-06-05T14:00:20.747392Z] [nf-25dbab87f7890562d49c9e1fd914b8fc-cbe53-zh7sv] [684_1] [WorkflowRunner] Elapsed time for full workflow: 18 sec