Downloading: s3://natera-platform-sandbox/pipeline-resources/ngi-igenomes/igenomes/Homo_sapiens/GATK/GRCh38/Sequence/WholeGenomeFasta/Homo_sapiens_assembly38.fasta
  Downloading: s3://natera-platform-sandbox/pipeline-resources/AIH/dna_daq/stored-normals/reference-NA12878-downsampled-500k.bam
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/c6/d3485ff01ff5fdf1e8780df5370696/.command.sh
  Downloading: s3://natera-platform-sandbox/pipeline-resources/ngi-igenomes/igenomes/Homo_sapiens/GATK/GRCh38/Sequence/WholeGenomeFasta/Homo_sapiens_assembly38.fasta.fai
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/f0/61734391e4f47c8b44be28e79e0683/HCC1395_BL.recalibrated.bam
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/f0/61734391e4f47c8b44be28e79e0683/HCC1395_BL.recalibrated.bam.bai
  Downloading: s3://natera-platform-sandbox/pipeline-resources/AIH/dna_daq/stored-normals/reference-NA12878-downsampled-500k.bam.bai
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/c6/d3485ff01ff5fdf1e8780df5370696/.command.run
  Downloading: s3://natera-platform-sandbox/pipeline-resources/ngi-igenomes/igenomes/Homo_sapiens/GATK/GRCh38/Annotation/intervals/altera_padded_intervals/scatter/chr1_68991-70108.bed.gz
  Downloading: s3://natera-platform-sandbox/pipeline-resources/ngi-igenomes/igenomes/Homo_sapiens/GATK/GRCh38/Annotation/intervals/altera_padded_intervals/scatter/chr1_68991-70108.bed.gz.tbi
==> STAGING COMPLETE (10 inputs)


Successfully created workflow run script.
To execute the workflow, run the following script and set appropriate options:

/var/tmp/strelka/runWorkflow.py
[2026-06-05T13:59:49.055597Z] [nf-c6d3485ff01ff5fdf1e8780df5370696-f50ce-hlk5n] [609_1] [WorkflowRunner] Initiating pyFlow run
[2026-06-05T13:59:49.056737Z] [nf-c6d3485ff01ff5fdf1e8780df5370696-f50ce-hlk5n] [609_1] [WorkflowRunner] pyFlowClientWorkflowClass: StrelkaSomaticWorkflow
[2026-06-05T13:59:49.056762Z] [nf-c6d3485ff01ff5fdf1e8780df5370696-f50ce-hlk5n] [609_1] [WorkflowRunner] pyFlowVersion: 1.1.20
[2026-06-05T13:59:49.056767Z] [nf-c6d3485ff01ff5fdf1e8780df5370696-f50ce-hlk5n] [609_1] [WorkflowRunner] pythonVersion: 2.7.15.final.0
[2026-06-05T13:59:49.056773Z] [nf-c6d3485ff01ff5fdf1e8780df5370696-f50ce-hlk5n] [609_1] [WorkflowRunner] WorkingDir: '/tmp/nxf.XXXX3rN5OB'
[2026-06-05T13:59:49.056777Z] [nf-c6d3485ff01ff5fdf1e8780df5370696-f50ce-hlk5n] [609_1] [WorkflowRunner] ProcessCmdLine: '/var/tmp/strelka/runWorkflow.py -m local -j 8'
[2026-06-05T13:59:49.056785Z] [nf-c6d3485ff01ff5fdf1e8780df5370696-f50ce-hlk5n] [609_1] [WorkflowRunner] [RunParameters] mode: local
[2026-06-05T13:59:49.056789Z] [nf-c6d3485ff01ff5fdf1e8780df5370696-f50ce-hlk5n] [609_1] [WorkflowRunner] [RunParameters] nCores: 8
[2026-06-05T13:59:49.056792Z] [nf-c6d3485ff01ff5fdf1e8780df5370696-f50ce-hlk5n] [609_1] [WorkflowRunner] [RunParameters] memMb: 3096076
[2026-06-05T13:59:49.056796Z] [nf-c6d3485ff01ff5fdf1e8780df5370696-f50ce-hlk5n] [609_1] [WorkflowRunner] [RunParameters] dataDir: /var/tmp/strelka/workspace/pyflow.data
[2026-06-05T13:59:49.056800Z] [nf-c6d3485ff01ff5fdf1e8780df5370696-f50ce-hlk5n] [609_1] [WorkflowRunner] [RunParameters] isDryRun: False
[2026-06-05T13:59:49.056803Z] [nf-c6d3485ff01ff5fdf1e8780df5370696-f50ce-hlk5n] [609_1] [WorkflowRunner] [RunParameters] isContinue: False
[2026-06-05T13:59:49.056807Z] [nf-c6d3485ff01ff5fdf1e8780df5370696-f50ce-hlk5n] [609_1] [WorkflowRunner] [RunParameters] isForceContinue: True
[2026-06-05T13:59:49.056812Z] [nf-c6d3485ff01ff5fdf1e8780df5370696-f50ce-hlk5n] [609_1] [WorkflowRunner] [RunParameters] mailTo: ''
[2026-06-05T13:59:49.057577Z] [nf-c6d3485ff01ff5fdf1e8780df5370696-f50ce-hlk5n] [609_1] [TaskRunner:masterWorkflow] Starting task specification for master workflow
[2026-06-05T13:59:49.057690Z] [nf-c6d3485ff01ff5fdf1e8780df5370696-f50ce-hlk5n] [609_1] [StrelkaSomaticWorkflow] Initiating Strelka somatic workflow version: 2.9.10
[2026-06-05T13:59:49.063656Z] [nf-c6d3485ff01ff5fdf1e8780df5370696-f50ce-hlk5n] [609_1] [WorkflowRunner] Adding sub-workflow task 'CallGenome' to master workflow
[2026-06-05T13:59:49.064363Z] [nf-c6d3485ff01ff5fdf1e8780df5370696-f50ce-hlk5n] [609_1] [TaskManager] Launching sub-workflow task: 'CallGenome' from master workflow
[2026-06-05T13:59:49.064730Z] [nf-c6d3485ff01ff5fdf1e8780df5370696-f50ce-hlk5n] [609_1] [TaskRunner:masterWorkflow] Finished task specification for master workflow
[2026-06-05T13:59:49.064876Z] [nf-c6d3485ff01ff5fdf1e8780df5370696-f50ce-hlk5n] [609_1] [TaskRunner:CallGenome] Starting task specification for sub-workflow
[2026-06-05T13:59:49.065060Z] [nf-c6d3485ff01ff5fdf1e8780df5370696-f50ce-hlk5n] [609_1] [WorkflowRunner] Adding command task 'CallGenome+makeTmpDir' to sub-workflow 'CallGenome'
[2026-06-05T13:59:49.065713Z] [nf-c6d3485ff01ff5fdf1e8780df5370696-f50ce-hlk5n] [609_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0000' to sub-workflow 'CallGenome'
[2026-06-05T13:59:49.065826Z] [nf-c6d3485ff01ff5fdf1e8780df5370696-f50ce-hlk5n] [609_1] [WorkflowRunner] Adding command task 'CallGenome+fixVcfHeader_chromId_000_chr1_0000' to sub-workflow 'CallGenome'
[2026-06-05T13:59:49.065895Z] [nf-c6d3485ff01ff5fdf1e8780df5370696-f50ce-hlk5n] [609_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0000' to sub-workflow 'CallGenome'
[2026-06-05T13:59:49.066018Z] [nf-c6d3485ff01ff5fdf1e8780df5370696-f50ce-hlk5n] [609_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0001' to sub-workflow 'CallGenome'
[2026-06-05T13:59:49.066084Z] [nf-c6d3485ff01ff5fdf1e8780df5370696-f50ce-hlk5n] [609_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0001' to sub-workflow 'CallGenome'
[2026-06-05T13:59:49.066199Z] [nf-c6d3485ff01ff5fdf1e8780df5370696-f50ce-hlk5n] [609_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0002' to sub-workflow 'CallGenome'
[2026-06-05T13:59:49.066265Z] [nf-c6d3485ff01ff5fdf1e8780df5370696-f50ce-hlk5n] [609_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0002' to sub-workflow 'CallGenome'
[2026-06-05T13:59:49.066378Z] [nf-c6d3485ff01ff5fdf1e8780df5370696-f50ce-hlk5n] [609_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0003' to sub-workflow 'CallGenome'
[2026-06-05T13:59:49.066447Z] [nf-c6d3485ff01ff5fdf1e8780df5370696-f50ce-hlk5n] [609_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0003' to sub-workflow 'CallGenome'
[2026-06-05T13:59:49.066527Z] [nf-c6d3485ff01ff5fdf1e8780df5370696-f50ce-hlk5n] [609_1] [TaskManager] Launching command task: 'CallGenome+makeTmpDir' from sub-workflow 'CallGenome'
[2026-06-05T13:59:49.066988Z] [nf-c6d3485ff01ff5fdf1e8780df5370696-f50ce-hlk5n] [609_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0004' to sub-workflow 'CallGenome'
[2026-06-05T13:59:49.067304Z] [nf-c6d3485ff01ff5fdf1e8780df5370696-f50ce-hlk5n] [609_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0004' to sub-workflow 'CallGenome'
[2026-06-05T13:59:49.067745Z] [nf-c6d3485ff01ff5fdf1e8780df5370696-f50ce-hlk5n] [609_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0005' to sub-workflow 'CallGenome'
[2026-06-05T13:59:49.067922Z] [nf-c6d3485ff01ff5fdf1e8780df5370696-f50ce-hlk5n] [609_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0005' to sub-workflow 'CallGenome'
[2026-06-05T13:59:49.068120Z] [nf-c6d3485ff01ff5fdf1e8780df5370696-f50ce-hlk5n] [609_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0006' to sub-workflow 'CallGenome'
[2026-06-05T13:59:49.072290Z] [nf-c6d3485ff01ff5fdf1e8780df5370696-f50ce-hlk5n] [609_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0006' to sub-workflow 'CallGenome'
[2026-06-05T13:59:49.072550Z] [nf-c6d3485ff01ff5fdf1e8780df5370696-f50ce-hlk5n] [609_1] [TaskRunner:CallGenome+makeTmpDir] Task initiated on local node
[2026-06-05T13:59:49.073465Z] [nf-c6d3485ff01ff5fdf1e8780df5370696-f50ce-hlk5n] [609_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0007' to sub-workflow 'CallGenome'
[2026-06-05T13:59:49.073576Z] [nf-c6d3485ff01ff5fdf1e8780df5370696-f50ce-hlk5n] [609_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0007' to sub-workflow 'CallGenome'
[2026-06-05T13:59:49.073839Z] [nf-c6d3485ff01ff5fdf1e8780df5370696-f50ce-hlk5n] [609_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0008' to sub-workflow 'CallGenome'
[2026-06-05T13:59:49.073914Z] [nf-c6d3485ff01ff5fdf1e8780df5370696-f50ce-hlk5n] [609_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0008' to sub-workflow 'CallGenome'
[2026-06-05T13:59:49.074037Z] [nf-c6d3485ff01ff5fdf1e8780df5370696-f50ce-hlk5n] [609_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0009' to sub-workflow 'CallGenome'
[2026-06-05T13:59:49.074143Z] [nf-c6d3485ff01ff5fdf1e8780df5370696-f50ce-hlk5n] [609_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0009' to sub-workflow 'CallGenome'
[2026-06-05T13:59:49.074259Z] [nf-c6d3485ff01ff5fdf1e8780df5370696-f50ce-hlk5n] [609_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0010' to sub-workflow 'CallGenome'
[2026-06-05T13:59:49.074322Z] [nf-c6d3485ff01ff5fdf1e8780df5370696-f50ce-hlk5n] [609_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0010' to sub-workflow 'CallGenome'
[2026-06-05T13:59:49.074731Z] [nf-c6d3485ff01ff5fdf1e8780df5370696-f50ce-hlk5n] [609_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0011' to sub-workflow 'CallGenome'
[2026-06-05T13:59:49.074980Z] [nf-c6d3485ff01ff5fdf1e8780df5370696-f50ce-hlk5n] [609_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0011' to sub-workflow 'CallGenome'
[2026-06-05T13:59:49.075107Z] [nf-c6d3485ff01ff5fdf1e8780df5370696-f50ce-hlk5n] [609_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0012' to sub-workflow 'CallGenome'
[2026-06-05T13:59:49.075174Z] [nf-c6d3485ff01ff5fdf1e8780df5370696-f50ce-hlk5n] [609_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0012' to sub-workflow 'CallGenome'
[2026-06-05T13:59:49.075283Z] [nf-c6d3485ff01ff5fdf1e8780df5370696-f50ce-hlk5n] [609_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0013' to sub-workflow 'CallGenome'
[2026-06-05T13:59:49.075371Z] [nf-c6d3485ff01ff5fdf1e8780df5370696-f50ce-hlk5n] [609_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0013' to sub-workflow 'CallGenome'
[2026-06-05T13:59:49.075487Z] [nf-c6d3485ff01ff5fdf1e8780df5370696-f50ce-hlk5n] [609_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0014' to sub-workflow 'CallGenome'
[2026-06-05T13:59:49.075547Z] [nf-c6d3485ff01ff5fdf1e8780df5370696-f50ce-hlk5n] [609_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0014' to sub-workflow 'CallGenome'
[2026-06-05T13:59:49.075657Z] [nf-c6d3485ff01ff5fdf1e8780df5370696-f50ce-hlk5n] [609_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0015' to sub-workflow 'CallGenome'
[2026-06-05T13:59:49.075719Z] [nf-c6d3485ff01ff5fdf1e8780df5370696-f50ce-hlk5n] [609_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0015' to sub-workflow 'CallGenome'
[2026-06-05T13:59:49.075828Z] [nf-c6d3485ff01ff5fdf1e8780df5370696-f50ce-hlk5n] [609_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0016' to sub-workflow 'CallGenome'
[2026-06-05T13:59:49.075891Z] [nf-c6d3485ff01ff5fdf1e8780df5370696-f50ce-hlk5n] [609_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0016' to sub-workflow 'CallGenome'
[2026-06-05T13:59:49.076046Z] [nf-c6d3485ff01ff5fdf1e8780df5370696-f50ce-hlk5n] [609_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0017' to sub-workflow 'CallGenome'
[2026-06-05T13:59:49.076168Z] [nf-c6d3485ff01ff5fdf1e8780df5370696-f50ce-hlk5n] [609_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0017' to sub-workflow 'CallGenome'
[2026-06-05T13:59:49.076644Z] [nf-c6d3485ff01ff5fdf1e8780df5370696-f50ce-hlk5n] [609_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0018' to sub-workflow 'CallGenome'
[2026-06-05T13:59:49.076709Z] [nf-c6d3485ff01ff5fdf1e8780df5370696-f50ce-hlk5n] [609_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0018' to sub-workflow 'CallGenome'
[2026-06-05T13:59:49.076821Z] [nf-c6d3485ff01ff5fdf1e8780df5370696-f50ce-hlk5n] [609_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0019' to sub-workflow 'CallGenome'
[2026-06-05T13:59:49.076882Z] [nf-c6d3485ff01ff5fdf1e8780df5370696-f50ce-hlk5n] [609_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0019' to sub-workflow 'CallGenome'
[2026-06-05T13:59:49.077333Z] [nf-c6d3485ff01ff5fdf1e8780df5370696-f50ce-hlk5n] [609_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0020' to sub-workflow 'CallGenome'
[2026-06-05T13:59:49.077396Z] [nf-c6d3485ff01ff5fdf1e8780df5370696-f50ce-hlk5n] [609_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0020' to sub-workflow 'CallGenome'
[2026-06-05T13:59:49.077540Z] [nf-c6d3485ff01ff5fdf1e8780df5370696-f50ce-hlk5n] [609_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0000' to sub-workflow 'CallGenome'
[2026-06-05T13:59:49.077661Z] [nf-c6d3485ff01ff5fdf1e8780df5370696-f50ce-hlk5n] [609_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0000' to sub-workflow 'CallGenome'
[2026-06-05T13:59:49.077959Z] [nf-c6d3485ff01ff5fdf1e8780df5370696-f50ce-hlk5n] [609_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0001' to sub-workflow 'CallGenome'
[2026-06-05T13:59:49.078619Z] [nf-c6d3485ff01ff5fdf1e8780df5370696-f50ce-hlk5n] [609_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0001' to sub-workflow 'CallGenome'
[2026-06-05T13:59:49.078826Z] [nf-c6d3485ff01ff5fdf1e8780df5370696-f50ce-hlk5n] [609_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0002' to sub-workflow 'CallGenome'
[2026-06-05T13:59:49.078907Z] [nf-c6d3485ff01ff5fdf1e8780df5370696-f50ce-hlk5n] [609_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0002' to sub-workflow 'CallGenome'
[2026-06-05T13:59:49.079036Z] [nf-c6d3485ff01ff5fdf1e8780df5370696-f50ce-hlk5n] [609_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0003' to sub-workflow 'CallGenome'
[2026-06-05T13:59:49.079102Z] [nf-c6d3485ff01ff5fdf1e8780df5370696-f50ce-hlk5n] [609_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0003' to sub-workflow 'CallGenome'
[2026-06-05T13:59:49.079220Z] [nf-c6d3485ff01ff5fdf1e8780df5370696-f50ce-hlk5n] [609_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0004' to sub-workflow 'CallGenome'
[2026-06-05T13:59:49.079281Z] [nf-c6d3485ff01ff5fdf1e8780df5370696-f50ce-hlk5n] [609_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0004' to sub-workflow 'CallGenome'
[2026-06-05T13:59:49.079545Z] [nf-c6d3485ff01ff5fdf1e8780df5370696-f50ce-hlk5n] [609_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0005' to sub-workflow 'CallGenome'
[2026-06-05T13:59:49.080263Z] [nf-c6d3485ff01ff5fdf1e8780df5370696-f50ce-hlk5n] [609_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0005' to sub-workflow 'CallGenome'
[2026-06-05T13:59:49.080442Z] [nf-c6d3485ff01ff5fdf1e8780df5370696-f50ce-hlk5n] [609_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0006' to sub-workflow 'CallGenome'
[2026-06-05T13:59:49.080560Z] [nf-c6d3485ff01ff5fdf1e8780df5370696-f50ce-hlk5n] [609_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0006' to sub-workflow 'CallGenome'
[2026-06-05T13:59:49.080687Z] [nf-c6d3485ff01ff5fdf1e8780df5370696-f50ce-hlk5n] [609_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0007' to sub-workflow 'CallGenome'
[2026-06-05T13:59:49.080751Z] [nf-c6d3485ff01ff5fdf1e8780df5370696-f50ce-hlk5n] [609_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0007' to sub-workflow 'CallGenome'
[2026-06-05T13:59:49.080865Z] [nf-c6d3485ff01ff5fdf1e8780df5370696-f50ce-hlk5n] [609_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0008' to sub-workflow 'CallGenome'
[2026-06-05T13:59:49.080929Z] [nf-c6d3485ff01ff5fdf1e8780df5370696-f50ce-hlk5n] [609_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0008' to sub-workflow 'CallGenome'
[2026-06-05T13:59:49.081162Z] [nf-c6d3485ff01ff5fdf1e8780df5370696-f50ce-hlk5n] [609_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0009' to sub-workflow 'CallGenome'
[2026-06-05T13:59:49.081308Z] [nf-c6d3485ff01ff5fdf1e8780df5370696-f50ce-hlk5n] [609_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0009' to sub-workflow 'CallGenome'
[2026-06-05T13:59:49.081443Z] [nf-c6d3485ff01ff5fdf1e8780df5370696-f50ce-hlk5n] [609_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0010' to sub-workflow 'CallGenome'
[2026-06-05T13:59:49.081681Z] [nf-c6d3485ff01ff5fdf1e8780df5370696-f50ce-hlk5n] [609_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0010' to sub-workflow 'CallGenome'
[2026-06-05T13:59:49.096356Z] [nf-c6d3485ff01ff5fdf1e8780df5370696-f50ce-hlk5n] [609_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0011' to sub-workflow 'CallGenome'
[2026-06-05T13:59:49.096466Z] [nf-c6d3485ff01ff5fdf1e8780df5370696-f50ce-hlk5n] [609_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0011' to sub-workflow 'CallGenome'
[2026-06-05T13:59:49.096540Z] [nf-c6d3485ff01ff5fdf1e8780df5370696-f50ce-hlk5n] [609_1] [WorkflowRunner] Adding command task 'CallGenome+completedAllGenomeSegments' to sub-workflow 'CallGenome'
[2026-06-05T13:59:49.096703Z] [nf-c6d3485ff01ff5fdf1e8780df5370696-f50ce-hlk5n] [609_1] [WorkflowRunner] Adding command task 'CallGenome+SNV_concat_vcf' to sub-workflow 'CallGenome'
[2026-06-05T13:59:49.096773Z] [nf-c6d3485ff01ff5fdf1e8780df5370696-f50ce-hlk5n] [609_1] [WorkflowRunner] Adding command task 'CallGenome+SNV_index_vcf' to sub-workflow 'CallGenome'
[2026-06-05T13:59:49.096860Z] [nf-c6d3485ff01ff5fdf1e8780df5370696-f50ce-hlk5n] [609_1] [WorkflowRunner] Adding command task 'CallGenome+Indel_concat_vcf' to sub-workflow 'CallGenome'
[2026-06-05T13:59:49.098562Z] [nf-c6d3485ff01ff5fdf1e8780df5370696-f50ce-hlk5n] [609_1] [WorkflowRunner] Adding command task 'CallGenome+Indel_index_vcf' to sub-workflow 'CallGenome'
[2026-06-05T13:59:49.098726Z] [nf-c6d3485ff01ff5fdf1e8780df5370696-f50ce-hlk5n] [609_1] [WorkflowRunner] Adding command task 'CallGenome+mergeRunStats' to sub-workflow 'CallGenome'
[2026-06-05T13:59:49.098810Z] [nf-c6d3485ff01ff5fdf1e8780df5370696-f50ce-hlk5n] [609_1] [WorkflowRunner] Adding command task 'CallGenome+removeTmpDir' to sub-workflow 'CallGenome'
[2026-06-05T13:59:49.099058Z] [nf-c6d3485ff01ff5fdf1e8780df5370696-f50ce-hlk5n] [609_1] [TaskRunner:CallGenome] Finished task specification for sub-workflow
[2026-06-05T13:59:49.107506Z] [nf-c6d3485ff01ff5fdf1e8780df5370696-f50ce-hlk5n] [609_1] [TaskManager] Completed command task: 'CallGenome+makeTmpDir' launched from sub-workflow 'CallGenome'
[2026-06-05T13:59:49.108174Z] [nf-c6d3485ff01ff5fdf1e8780df5370696-f50ce-hlk5n] [609_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0004' from sub-workflow 'CallGenome'
[2026-06-05T13:59:49.108477Z] [nf-c6d3485ff01ff5fdf1e8780df5370696-f50ce-hlk5n] [609_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0003' from sub-workflow 'CallGenome'
[2026-06-05T13:59:49.108748Z] [nf-c6d3485ff01ff5fdf1e8780df5370696-f50ce-hlk5n] [609_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0009' from sub-workflow 'CallGenome'
[2026-06-05T13:59:49.109360Z] [nf-c6d3485ff01ff5fdf1e8780df5370696-f50ce-hlk5n] [609_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0008' from sub-workflow 'CallGenome'
[2026-06-05T13:59:49.109689Z] [nf-c6d3485ff01ff5fdf1e8780df5370696-f50ce-hlk5n] [609_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0012' from sub-workflow 'CallGenome'
[2026-06-05T13:59:49.110409Z] [nf-c6d3485ff01ff5fdf1e8780df5370696-f50ce-hlk5n] [609_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0000' from sub-workflow 'CallGenome'
[2026-06-05T13:59:49.110955Z] [nf-c6d3485ff01ff5fdf1e8780df5370696-f50ce-hlk5n] [609_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0001' from sub-workflow 'CallGenome'
[2026-06-05T13:59:49.111620Z] [nf-c6d3485ff01ff5fdf1e8780df5370696-f50ce-hlk5n] [609_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0006' from sub-workflow 'CallGenome'
[2026-06-05T13:59:49.115839Z] [nf-c6d3485ff01ff5fdf1e8780df5370696-f50ce-hlk5n] [609_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0008] Task initiated on local node
[2026-06-05T13:59:49.120003Z] [nf-c6d3485ff01ff5fdf1e8780df5370696-f50ce-hlk5n] [609_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0003] Task initiated on local node
[2026-06-05T13:59:49.125769Z] [nf-c6d3485ff01ff5fdf1e8780df5370696-f50ce-hlk5n] [609_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0012] Task initiated on local node
[2026-06-05T13:59:49.130867Z] [nf-c6d3485ff01ff5fdf1e8780df5370696-f50ce-hlk5n] [609_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0009] Task initiated on local node
[2026-06-05T13:59:49.133041Z] [nf-c6d3485ff01ff5fdf1e8780df5370696-f50ce-hlk5n] [609_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0000] Task initiated on local node
[2026-06-05T13:59:49.133539Z] [nf-c6d3485ff01ff5fdf1e8780df5370696-f50ce-hlk5n] [609_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0001] Task initiated on local node
[2026-06-05T13:59:49.134846Z] [nf-c6d3485ff01ff5fdf1e8780df5370696-f50ce-hlk5n] [609_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0004] Task initiated on local node
[2026-06-05T13:59:49.136505Z] [nf-c6d3485ff01ff5fdf1e8780df5370696-f50ce-hlk5n] [609_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0006] Task initiated on local node
[2026-06-05T13:59:49.230233Z] [nf-c6d3485ff01ff5fdf1e8780df5370696-f50ce-hlk5n] [609_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0008' launched from sub-workflow 'CallGenome'
[2026-06-05T13:59:49.231207Z] [nf-c6d3485ff01ff5fdf1e8780df5370696-f50ce-hlk5n] [609_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0014' from sub-workflow 'CallGenome'
[2026-06-05T13:59:49.237696Z] [nf-c6d3485ff01ff5fdf1e8780df5370696-f50ce-hlk5n] [609_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0014] Task initiated on local node
[2026-06-05T13:59:49.948025Z] [nf-c6d3485ff01ff5fdf1e8780df5370696-f50ce-hlk5n] [609_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0003' launched from sub-workflow 'CallGenome'
[2026-06-05T13:59:49.949356Z] [nf-c6d3485ff01ff5fdf1e8780df5370696-f50ce-hlk5n] [609_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0019' from sub-workflow 'CallGenome'
[2026-06-05T13:59:49.952707Z] [nf-c6d3485ff01ff5fdf1e8780df5370696-f50ce-hlk5n] [609_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0019] Task initiated on local node
[2026-06-05T13:59:50.264305Z] [nf-c6d3485ff01ff5fdf1e8780df5370696-f50ce-hlk5n] [609_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0006' launched from sub-workflow 'CallGenome'
[2026-06-05T13:59:50.265199Z] [nf-c6d3485ff01ff5fdf1e8780df5370696-f50ce-hlk5n] [609_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0011' from sub-workflow 'CallGenome'
[2026-06-05T13:59:50.268655Z] [nf-c6d3485ff01ff5fdf1e8780df5370696-f50ce-hlk5n] [609_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0011] Task initiated on local node
[2026-06-05T13:59:50.329810Z] [nf-c6d3485ff01ff5fdf1e8780df5370696-f50ce-hlk5n] [609_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0011' launched from sub-workflow 'CallGenome'
[2026-06-05T13:59:50.330737Z] [nf-c6d3485ff01ff5fdf1e8780df5370696-f50ce-hlk5n] [609_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0006' from sub-workflow 'CallGenome'
[2026-06-05T13:59:50.334359Z] [nf-c6d3485ff01ff5fdf1e8780df5370696-f50ce-hlk5n] [609_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0006] Task initiated on local node
[2026-06-05T13:59:50.395494Z] [nf-c6d3485ff01ff5fdf1e8780df5370696-f50ce-hlk5n] [609_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0006' launched from sub-workflow 'CallGenome'
[2026-06-05T13:59:50.396405Z] [nf-c6d3485ff01ff5fdf1e8780df5370696-f50ce-hlk5n] [609_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0005' from sub-workflow 'CallGenome'
[2026-06-05T13:59:50.400397Z] [nf-c6d3485ff01ff5fdf1e8780df5370696-f50ce-hlk5n] [609_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0005] Task initiated on local node
[2026-06-05T13:59:51.313610Z] [nf-c6d3485ff01ff5fdf1e8780df5370696-f50ce-hlk5n] [609_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0004' launched from sub-workflow 'CallGenome'
[2026-06-05T13:59:51.314576Z] [nf-c6d3485ff01ff5fdf1e8780df5370696-f50ce-hlk5n] [609_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0000' from sub-workflow 'CallGenome'
[2026-06-05T13:59:51.319680Z] [nf-c6d3485ff01ff5fdf1e8780df5370696-f50ce-hlk5n] [609_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0000] Task initiated on local node
[2026-06-05T13:59:51.580740Z] [nf-c6d3485ff01ff5fdf1e8780df5370696-f50ce-hlk5n] [609_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0005' launched from sub-workflow 'CallGenome'
[2026-06-05T13:59:51.581756Z] [nf-c6d3485ff01ff5fdf1e8780df5370696-f50ce-hlk5n] [609_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0004' from sub-workflow 'CallGenome'
[2026-06-05T13:59:51.585715Z] [nf-c6d3485ff01ff5fdf1e8780df5370696-f50ce-hlk5n] [609_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0004] Task initiated on local node
[2026-06-05T13:59:51.646506Z] [nf-c6d3485ff01ff5fdf1e8780df5370696-f50ce-hlk5n] [609_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0014' launched from sub-workflow 'CallGenome'
[2026-06-05T13:59:51.646614Z] [nf-c6d3485ff01ff5fdf1e8780df5370696-f50ce-hlk5n] [609_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0004' launched from sub-workflow 'CallGenome'
[2026-06-05T13:59:51.647456Z] [nf-c6d3485ff01ff5fdf1e8780df5370696-f50ce-hlk5n] [609_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0003' from sub-workflow 'CallGenome'
[2026-06-05T13:59:51.648153Z] [nf-c6d3485ff01ff5fdf1e8780df5370696-f50ce-hlk5n] [609_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0010' from sub-workflow 'CallGenome'
[2026-06-05T13:59:51.651427Z] [nf-c6d3485ff01ff5fdf1e8780df5370696-f50ce-hlk5n] [609_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0003] Task initiated on local node
[2026-06-05T13:59:51.654024Z] [nf-c6d3485ff01ff5fdf1e8780df5370696-f50ce-hlk5n] [609_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0010] Task initiated on local node
[2026-06-05T13:59:51.667347Z] [nf-c6d3485ff01ff5fdf1e8780df5370696-f50ce-hlk5n] [609_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0009' launched from sub-workflow 'CallGenome'
[2026-06-05T13:59:51.668221Z] [nf-c6d3485ff01ff5fdf1e8780df5370696-f50ce-hlk5n] [609_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0014' from sub-workflow 'CallGenome'
[2026-06-05T13:59:51.671728Z] [nf-c6d3485ff01ff5fdf1e8780df5370696-f50ce-hlk5n] [609_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0014] Task initiated on local node
[2026-06-05T13:59:51.700994Z] [nf-c6d3485ff01ff5fdf1e8780df5370696-f50ce-hlk5n] [609_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0003' launched from sub-workflow 'CallGenome'
[2026-06-05T13:59:51.702067Z] [nf-c6d3485ff01ff5fdf1e8780df5370696-f50ce-hlk5n] [609_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0020' from sub-workflow 'CallGenome'
[2026-06-05T13:59:51.706396Z] [nf-c6d3485ff01ff5fdf1e8780df5370696-f50ce-hlk5n] [609_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0014' launched from sub-workflow 'CallGenome'
[2026-06-05T13:59:51.706719Z] [nf-c6d3485ff01ff5fdf1e8780df5370696-f50ce-hlk5n] [609_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0020] Task initiated on local node
[2026-06-05T13:59:51.707573Z] [nf-c6d3485ff01ff5fdf1e8780df5370696-f50ce-hlk5n] [609_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0016' from sub-workflow 'CallGenome'
[2026-06-05T13:59:51.710932Z] [nf-c6d3485ff01ff5fdf1e8780df5370696-f50ce-hlk5n] [609_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0016] Task initiated on local node
[2026-06-05T13:59:51.715781Z] [nf-c6d3485ff01ff5fdf1e8780df5370696-f50ce-hlk5n] [609_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0010' launched from sub-workflow 'CallGenome'
[2026-06-05T13:59:51.716586Z] [nf-c6d3485ff01ff5fdf1e8780df5370696-f50ce-hlk5n] [609_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0005' from sub-workflow 'CallGenome'
[2026-06-05T13:59:51.719511Z] [nf-c6d3485ff01ff5fdf1e8780df5370696-f50ce-hlk5n] [609_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0005] Task initiated on local node
[2026-06-05T13:59:51.782049Z] [nf-c6d3485ff01ff5fdf1e8780df5370696-f50ce-hlk5n] [609_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0005' launched from sub-workflow 'CallGenome'
[2026-06-05T13:59:51.782887Z] [nf-c6d3485ff01ff5fdf1e8780df5370696-f50ce-hlk5n] [609_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0011' from sub-workflow 'CallGenome'
[2026-06-05T13:59:51.786957Z] [nf-c6d3485ff01ff5fdf1e8780df5370696-f50ce-hlk5n] [609_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0011] Task initiated on local node
[2026-06-05T13:59:51.847771Z] [nf-c6d3485ff01ff5fdf1e8780df5370696-f50ce-hlk5n] [609_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0011' launched from sub-workflow 'CallGenome'
[2026-06-05T13:59:51.848559Z] [nf-c6d3485ff01ff5fdf1e8780df5370696-f50ce-hlk5n] [609_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0007' from sub-workflow 'CallGenome'
[2026-06-05T13:59:51.852622Z] [nf-c6d3485ff01ff5fdf1e8780df5370696-f50ce-hlk5n] [609_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0007] Task initiated on local node
[2026-06-05T13:59:51.913796Z] [nf-c6d3485ff01ff5fdf1e8780df5370696-f50ce-hlk5n] [609_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0007' launched from sub-workflow 'CallGenome'
[2026-06-05T13:59:51.914670Z] [nf-c6d3485ff01ff5fdf1e8780df5370696-f50ce-hlk5n] [609_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0007' from sub-workflow 'CallGenome'
[2026-06-05T13:59:51.918411Z] [nf-c6d3485ff01ff5fdf1e8780df5370696-f50ce-hlk5n] [609_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0007] Task initiated on local node
[2026-06-05T13:59:51.979737Z] [nf-c6d3485ff01ff5fdf1e8780df5370696-f50ce-hlk5n] [609_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0007' launched from sub-workflow 'CallGenome'
[2026-06-05T13:59:51.980520Z] [nf-c6d3485ff01ff5fdf1e8780df5370696-f50ce-hlk5n] [609_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0005' from sub-workflow 'CallGenome'
[2026-06-05T13:59:51.984305Z] [nf-c6d3485ff01ff5fdf1e8780df5370696-f50ce-hlk5n] [609_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0005] Task initiated on local node
[2026-06-05T13:59:52.196115Z] [nf-c6d3485ff01ff5fdf1e8780df5370696-f50ce-hlk5n] [609_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0001' launched from sub-workflow 'CallGenome'
[2026-06-05T13:59:52.197012Z] [nf-c6d3485ff01ff5fdf1e8780df5370696-f50ce-hlk5n] [609_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0008' from sub-workflow 'CallGenome'
[2026-06-05T13:59:52.200670Z] [nf-c6d3485ff01ff5fdf1e8780df5370696-f50ce-hlk5n] [609_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0008] Task initiated on local node
[2026-06-05T13:59:52.261988Z] [nf-c6d3485ff01ff5fdf1e8780df5370696-f50ce-hlk5n] [609_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0008' launched from sub-workflow 'CallGenome'
[2026-06-05T13:59:52.262976Z] [nf-c6d3485ff01ff5fdf1e8780df5370696-f50ce-hlk5n] [609_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0002' from sub-workflow 'CallGenome'
[2026-06-05T13:59:52.267294Z] [nf-c6d3485ff01ff5fdf1e8780df5370696-f50ce-hlk5n] [609_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0002] Task initiated on local node
[2026-06-05T13:59:52.378661Z] [nf-c6d3485ff01ff5fdf1e8780df5370696-f50ce-hlk5n] [609_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0012' launched from sub-workflow 'CallGenome'
[2026-06-05T13:59:52.379575Z] [nf-c6d3485ff01ff5fdf1e8780df5370696-f50ce-hlk5n] [609_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0011' from sub-workflow 'CallGenome'
[2026-06-05T13:59:52.383610Z] [nf-c6d3485ff01ff5fdf1e8780df5370696-f50ce-hlk5n] [609_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0011] Task initiated on local node
[2026-06-05T13:59:52.445333Z] [nf-c6d3485ff01ff5fdf1e8780df5370696-f50ce-hlk5n] [609_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0011' launched from sub-workflow 'CallGenome'
[2026-06-05T13:59:52.446303Z] [nf-c6d3485ff01ff5fdf1e8780df5370696-f50ce-hlk5n] [609_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0003' from sub-workflow 'CallGenome'
[2026-06-05T13:59:52.450232Z] [nf-c6d3485ff01ff5fdf1e8780df5370696-f50ce-hlk5n] [609_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0003] Task initiated on local node
[2026-06-05T13:59:52.479321Z] [nf-c6d3485ff01ff5fdf1e8780df5370696-f50ce-hlk5n] [609_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0000' launched from sub-workflow 'CallGenome'
[2026-06-05T13:59:52.480313Z] [nf-c6d3485ff01ff5fdf1e8780df5370696-f50ce-hlk5n] [609_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0013' from sub-workflow 'CallGenome'
[2026-06-05T13:59:52.483817Z] [nf-c6d3485ff01ff5fdf1e8780df5370696-f50ce-hlk5n] [609_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0013] Task initiated on local node
[2026-06-05T13:59:52.512959Z] [nf-c6d3485ff01ff5fdf1e8780df5370696-f50ce-hlk5n] [609_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0000' launched from sub-workflow 'CallGenome'
[2026-06-05T13:59:52.513908Z] [nf-c6d3485ff01ff5fdf1e8780df5370696-f50ce-hlk5n] [609_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0000' from sub-workflow 'CallGenome'
[2026-06-05T13:59:52.517184Z] [nf-c6d3485ff01ff5fdf1e8780df5370696-f50ce-hlk5n] [609_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0000] Task initiated on local node
[2026-06-05T13:59:52.579638Z] [nf-c6d3485ff01ff5fdf1e8780df5370696-f50ce-hlk5n] [609_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0000' launched from sub-workflow 'CallGenome'
[2026-06-05T13:59:52.580537Z] [nf-c6d3485ff01ff5fdf1e8780df5370696-f50ce-hlk5n] [609_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0007' from sub-workflow 'CallGenome'
[2026-06-05T13:59:52.583903Z] [nf-c6d3485ff01ff5fdf1e8780df5370696-f50ce-hlk5n] [609_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0007] Task initiated on local node
[2026-06-05T13:59:52.695527Z] [nf-c6d3485ff01ff5fdf1e8780df5370696-f50ce-hlk5n] [609_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0019' launched from sub-workflow 'CallGenome'
[2026-06-05T13:59:52.696487Z] [nf-c6d3485ff01ff5fdf1e8780df5370696-f50ce-hlk5n] [609_1] [TaskManager] Launching command task: 'CallGenome+fixVcfHeader_chromId_000_chr1_0000' from sub-workflow 'CallGenome'
[2026-06-05T13:59:52.700066Z] [nf-c6d3485ff01ff5fdf1e8780df5370696-f50ce-hlk5n] [609_1] [TaskRunner:CallGenome+fixVcfHeader_chromId_000_chr1_0000] Task initiated on local node
[2026-06-05T13:59:52.761062Z] [nf-c6d3485ff01ff5fdf1e8780df5370696-f50ce-hlk5n] [609_1] [TaskManager] Completed command task: 'CallGenome+fixVcfHeader_chromId_000_chr1_0000' launched from sub-workflow 'CallGenome'
[2026-06-05T13:59:52.762051Z] [nf-c6d3485ff01ff5fdf1e8780df5370696-f50ce-hlk5n] [609_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0000' from sub-workflow 'CallGenome'
[2026-06-05T13:59:52.766095Z] [nf-c6d3485ff01ff5fdf1e8780df5370696-f50ce-hlk5n] [609_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0000] Task initiated on local node
[2026-06-05T13:59:52.826990Z] [nf-c6d3485ff01ff5fdf1e8780df5370696-f50ce-hlk5n] [609_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0000' launched from sub-workflow 'CallGenome'
[2026-06-05T13:59:52.827899Z] [nf-c6d3485ff01ff5fdf1e8780df5370696-f50ce-hlk5n] [609_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0006' from sub-workflow 'CallGenome'
[2026-06-05T13:59:52.831463Z] [nf-c6d3485ff01ff5fdf1e8780df5370696-f50ce-hlk5n] [609_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0006] Task initiated on local node
[2026-06-05T13:59:53.093398Z] [nf-c6d3485ff01ff5fdf1e8780df5370696-f50ce-hlk5n] [609_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0016' launched from sub-workflow 'CallGenome'
[2026-06-05T13:59:53.094150Z] [nf-c6d3485ff01ff5fdf1e8780df5370696-f50ce-hlk5n] [609_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0009' from sub-workflow 'CallGenome'
[2026-06-05T13:59:53.097680Z] [nf-c6d3485ff01ff5fdf1e8780df5370696-f50ce-hlk5n] [609_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0009] Task initiated on local node
[2026-06-05T13:59:53.159060Z] [nf-c6d3485ff01ff5fdf1e8780df5370696-f50ce-hlk5n] [609_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0009' launched from sub-workflow 'CallGenome'
[2026-06-05T13:59:53.159929Z] [nf-c6d3485ff01ff5fdf1e8780df5370696-f50ce-hlk5n] [609_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0017' from sub-workflow 'CallGenome'
[2026-06-05T13:59:53.163795Z] [nf-c6d3485ff01ff5fdf1e8780df5370696-f50ce-hlk5n] [609_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0017] Task initiated on local node
[2026-06-05T13:59:54.428081Z] [nf-c6d3485ff01ff5fdf1e8780df5370696-f50ce-hlk5n] [609_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0005' launched from sub-workflow 'CallGenome'
[2026-06-05T13:59:54.428926Z] [nf-c6d3485ff01ff5fdf1e8780df5370696-f50ce-hlk5n] [609_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0009' from sub-workflow 'CallGenome'
[2026-06-05T13:59:54.432715Z] [nf-c6d3485ff01ff5fdf1e8780df5370696-f50ce-hlk5n] [609_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0009] Task initiated on local node
[2026-06-05T13:59:54.493754Z] [nf-c6d3485ff01ff5fdf1e8780df5370696-f50ce-hlk5n] [609_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0009' launched from sub-workflow 'CallGenome'
[2026-06-05T13:59:54.494621Z] [nf-c6d3485ff01ff5fdf1e8780df5370696-f50ce-hlk5n] [609_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0011' from sub-workflow 'CallGenome'
[2026-06-05T13:59:54.498573Z] [nf-c6d3485ff01ff5fdf1e8780df5370696-f50ce-hlk5n] [609_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0011] Task initiated on local node
[2026-06-05T13:59:54.559557Z] [nf-c6d3485ff01ff5fdf1e8780df5370696-f50ce-hlk5n] [609_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0011' launched from sub-workflow 'CallGenome'
[2026-06-05T13:59:54.560435Z] [nf-c6d3485ff01ff5fdf1e8780df5370696-f50ce-hlk5n] [609_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0001' from sub-workflow 'CallGenome'
[2026-06-05T13:59:54.564013Z] [nf-c6d3485ff01ff5fdf1e8780df5370696-f50ce-hlk5n] [609_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0001] Task initiated on local node
[2026-06-05T13:59:54.825576Z] [nf-c6d3485ff01ff5fdf1e8780df5370696-f50ce-hlk5n] [609_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0007' launched from sub-workflow 'CallGenome'
[2026-06-05T13:59:54.826395Z] [nf-c6d3485ff01ff5fdf1e8780df5370696-f50ce-hlk5n] [609_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0007' from sub-workflow 'CallGenome'
[2026-06-05T13:59:54.830578Z] [nf-c6d3485ff01ff5fdf1e8780df5370696-f50ce-hlk5n] [609_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0007] Task initiated on local node
[2026-06-05T13:59:54.891277Z] [nf-c6d3485ff01ff5fdf1e8780df5370696-f50ce-hlk5n] [609_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0007' launched from sub-workflow 'CallGenome'
[2026-06-05T13:59:54.891402Z] [nf-c6d3485ff01ff5fdf1e8780df5370696-f50ce-hlk5n] [609_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0020' launched from sub-workflow 'CallGenome'
[2026-06-05T13:59:54.892143Z] [nf-c6d3485ff01ff5fdf1e8780df5370696-f50ce-hlk5n] [609_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0016' from sub-workflow 'CallGenome'
[2026-06-05T13:59:54.892851Z] [nf-c6d3485ff01ff5fdf1e8780df5370696-f50ce-hlk5n] [609_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0004' from sub-workflow 'CallGenome'
[2026-06-05T13:59:54.896226Z] [nf-c6d3485ff01ff5fdf1e8780df5370696-f50ce-hlk5n] [609_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0016] Task initiated on local node
[2026-06-05T13:59:54.898674Z] [nf-c6d3485ff01ff5fdf1e8780df5370696-f50ce-hlk5n] [609_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0004] Task initiated on local node
[2026-06-05T13:59:54.927825Z] [nf-c6d3485ff01ff5fdf1e8780df5370696-f50ce-hlk5n] [609_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0006' launched from sub-workflow 'CallGenome'
[2026-06-05T13:59:54.928598Z] [nf-c6d3485ff01ff5fdf1e8780df5370696-f50ce-hlk5n] [609_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0018' from sub-workflow 'CallGenome'
[2026-06-05T13:59:54.931898Z] [nf-c6d3485ff01ff5fdf1e8780df5370696-f50ce-hlk5n] [609_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0018] Task initiated on local node
[2026-06-05T13:59:54.933202Z] [nf-c6d3485ff01ff5fdf1e8780df5370696-f50ce-hlk5n] [609_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0016' launched from sub-workflow 'CallGenome'
[2026-06-05T13:59:54.933784Z] [nf-c6d3485ff01ff5fdf1e8780df5370696-f50ce-hlk5n] [609_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0010' from sub-workflow 'CallGenome'
[2026-06-05T13:59:54.936843Z] [nf-c6d3485ff01ff5fdf1e8780df5370696-f50ce-hlk5n] [609_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0010] Task initiated on local node
[2026-06-05T13:59:54.998588Z] [nf-c6d3485ff01ff5fdf1e8780df5370696-f50ce-hlk5n] [609_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0010' launched from sub-workflow 'CallGenome'
[2026-06-05T13:59:54.999384Z] [nf-c6d3485ff01ff5fdf1e8780df5370696-f50ce-hlk5n] [609_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0009' from sub-workflow 'CallGenome'
[2026-06-05T13:59:55.002446Z] [nf-c6d3485ff01ff5fdf1e8780df5370696-f50ce-hlk5n] [609_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0009] Task initiated on local node
[2026-06-05T13:59:55.064015Z] [nf-c6d3485ff01ff5fdf1e8780df5370696-f50ce-hlk5n] [609_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0009' launched from sub-workflow 'CallGenome'
[2026-06-05T13:59:55.064785Z] [nf-c6d3485ff01ff5fdf1e8780df5370696-f50ce-hlk5n] [609_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0005' from sub-workflow 'CallGenome'
[2026-06-05T13:59:55.068090Z] [nf-c6d3485ff01ff5fdf1e8780df5370696-f50ce-hlk5n] [609_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0005] Task initiated on local node
[2026-06-05T13:59:55.129402Z] [nf-c6d3485ff01ff5fdf1e8780df5370696-f50ce-hlk5n] [609_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0005' launched from sub-workflow 'CallGenome'
[2026-06-05T13:59:55.130168Z] [nf-c6d3485ff01ff5fdf1e8780df5370696-f50ce-hlk5n] [609_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0002' from sub-workflow 'CallGenome'
[2026-06-05T13:59:55.133818Z] [nf-c6d3485ff01ff5fdf1e8780df5370696-f50ce-hlk5n] [609_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0002] Task initiated on local node
[2026-06-05T13:59:55.295258Z] [nf-c6d3485ff01ff5fdf1e8780df5370696-f50ce-hlk5n] [609_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0013' launched from sub-workflow 'CallGenome'
[2026-06-05T13:59:55.296005Z] [nf-c6d3485ff01ff5fdf1e8780df5370696-f50ce-hlk5n] [609_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0013' from sub-workflow 'CallGenome'
[2026-06-05T13:59:55.300305Z] [nf-c6d3485ff01ff5fdf1e8780df5370696-f50ce-hlk5n] [609_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0013] Task initiated on local node
[2026-06-05T13:59:55.361051Z] [nf-c6d3485ff01ff5fdf1e8780df5370696-f50ce-hlk5n] [609_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0013' launched from sub-workflow 'CallGenome'
[2026-06-05T13:59:55.361913Z] [nf-c6d3485ff01ff5fdf1e8780df5370696-f50ce-hlk5n] [609_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0019' from sub-workflow 'CallGenome'
[2026-06-05T13:59:55.365123Z] [nf-c6d3485ff01ff5fdf1e8780df5370696-f50ce-hlk5n] [609_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0019] Task initiated on local node
[2026-06-05T13:59:55.426466Z] [nf-c6d3485ff01ff5fdf1e8780df5370696-f50ce-hlk5n] [609_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0002' launched from sub-workflow 'CallGenome'
[2026-06-05T13:59:55.426588Z] [nf-c6d3485ff01ff5fdf1e8780df5370696-f50ce-hlk5n] [609_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0019' launched from sub-workflow 'CallGenome'
[2026-06-05T13:59:55.427229Z] [nf-c6d3485ff01ff5fdf1e8780df5370696-f50ce-hlk5n] [609_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0002' from sub-workflow 'CallGenome'
[2026-06-05T13:59:55.427844Z] [nf-c6d3485ff01ff5fdf1e8780df5370696-f50ce-hlk5n] [609_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0006' from sub-workflow 'CallGenome'
[2026-06-05T13:59:55.431956Z] [nf-c6d3485ff01ff5fdf1e8780df5370696-f50ce-hlk5n] [609_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0006] Task initiated on local node
[2026-06-05T13:59:55.432940Z] [nf-c6d3485ff01ff5fdf1e8780df5370696-f50ce-hlk5n] [609_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0002] Task initiated on local node
[2026-06-05T13:59:55.493177Z] [nf-c6d3485ff01ff5fdf1e8780df5370696-f50ce-hlk5n] [609_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0003' launched from sub-workflow 'CallGenome'
[2026-06-05T13:59:55.493282Z] [nf-c6d3485ff01ff5fdf1e8780df5370696-f50ce-hlk5n] [609_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0006' launched from sub-workflow 'CallGenome'
[2026-06-05T13:59:55.493311Z] [nf-c6d3485ff01ff5fdf1e8780df5370696-f50ce-hlk5n] [609_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0002' launched from sub-workflow 'CallGenome'
[2026-06-05T13:59:55.493945Z] [nf-c6d3485ff01ff5fdf1e8780df5370696-f50ce-hlk5n] [609_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0012' from sub-workflow 'CallGenome'
[2026-06-05T13:59:55.494514Z] [nf-c6d3485ff01ff5fdf1e8780df5370696-f50ce-hlk5n] [609_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0015' from sub-workflow 'CallGenome'
[2026-06-05T13:59:55.496496Z] [nf-c6d3485ff01ff5fdf1e8780df5370696-f50ce-hlk5n] [609_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0008' from sub-workflow 'CallGenome'
[2026-06-05T13:59:55.497485Z] [nf-c6d3485ff01ff5fdf1e8780df5370696-f50ce-hlk5n] [609_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0012] Task initiated on local node
[2026-06-05T13:59:55.500949Z] [nf-c6d3485ff01ff5fdf1e8780df5370696-f50ce-hlk5n] [609_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0015] Task initiated on local node
[2026-06-05T13:59:55.502578Z] [nf-c6d3485ff01ff5fdf1e8780df5370696-f50ce-hlk5n] [609_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0008] Task initiated on local node
[2026-06-05T13:59:55.561976Z] [nf-c6d3485ff01ff5fdf1e8780df5370696-f50ce-hlk5n] [609_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0012' launched from sub-workflow 'CallGenome'
[2026-06-05T13:59:55.562648Z] [nf-c6d3485ff01ff5fdf1e8780df5370696-f50ce-hlk5n] [609_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0020' from sub-workflow 'CallGenome'
[2026-06-05T13:59:55.566267Z] [nf-c6d3485ff01ff5fdf1e8780df5370696-f50ce-hlk5n] [609_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0020] Task initiated on local node
[2026-06-05T13:59:55.627310Z] [nf-c6d3485ff01ff5fdf1e8780df5370696-f50ce-hlk5n] [609_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0020' launched from sub-workflow 'CallGenome'
[2026-06-05T13:59:55.627971Z] [nf-c6d3485ff01ff5fdf1e8780df5370696-f50ce-hlk5n] [609_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0003' from sub-workflow 'CallGenome'
[2026-06-05T13:59:55.631894Z] [nf-c6d3485ff01ff5fdf1e8780df5370696-f50ce-hlk5n] [609_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0003] Task initiated on local node
[2026-06-05T13:59:55.692855Z] [nf-c6d3485ff01ff5fdf1e8780df5370696-f50ce-hlk5n] [609_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0003' launched from sub-workflow 'CallGenome'
[2026-06-05T13:59:55.693491Z] [nf-c6d3485ff01ff5fdf1e8780df5370696-f50ce-hlk5n] [609_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0010' from sub-workflow 'CallGenome'
[2026-06-05T13:59:55.697529Z] [nf-c6d3485ff01ff5fdf1e8780df5370696-f50ce-hlk5n] [609_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0010] Task initiated on local node
[2026-06-05T13:59:55.808123Z] [nf-c6d3485ff01ff5fdf1e8780df5370696-f50ce-hlk5n] [609_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0017' launched from sub-workflow 'CallGenome'
[2026-06-05T13:59:55.808759Z] [nf-c6d3485ff01ff5fdf1e8780df5370696-f50ce-hlk5n] [609_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0017' from sub-workflow 'CallGenome'
[2026-06-05T13:59:55.811728Z] [nf-c6d3485ff01ff5fdf1e8780df5370696-f50ce-hlk5n] [609_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0017] Task initiated on local node
[2026-06-05T13:59:55.874032Z] [nf-c6d3485ff01ff5fdf1e8780df5370696-f50ce-hlk5n] [609_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0017' launched from sub-workflow 'CallGenome'
[2026-06-05T13:59:55.874611Z] [nf-c6d3485ff01ff5fdf1e8780df5370696-f50ce-hlk5n] [609_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0001' from sub-workflow 'CallGenome'
[2026-06-05T13:59:55.877598Z] [nf-c6d3485ff01ff5fdf1e8780df5370696-f50ce-hlk5n] [609_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0001] Task initiated on local node
[2026-06-05T13:59:55.938948Z] [nf-c6d3485ff01ff5fdf1e8780df5370696-f50ce-hlk5n] [609_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0001' launched from sub-workflow 'CallGenome'
[2026-06-05T13:59:56.303831Z] [nf-c6d3485ff01ff5fdf1e8780df5370696-f50ce-hlk5n] [609_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0010' launched from sub-workflow 'CallGenome'
[2026-06-05T13:59:56.304420Z] [nf-c6d3485ff01ff5fdf1e8780df5370696-f50ce-hlk5n] [609_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0010' from sub-workflow 'CallGenome'
[2026-06-05T13:59:56.308143Z] [nf-c6d3485ff01ff5fdf1e8780df5370696-f50ce-hlk5n] [609_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0010] Task initiated on local node
[2026-06-05T13:59:56.369128Z] [nf-c6d3485ff01ff5fdf1e8780df5370696-f50ce-hlk5n] [609_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0010' launched from sub-workflow 'CallGenome'
[2026-06-05T13:59:56.370789Z] [nf-c6d3485ff01ff5fdf1e8780df5370696-f50ce-hlk5n] [609_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0008' launched from sub-workflow 'CallGenome'
[2026-06-05T13:59:56.371296Z] [nf-c6d3485ff01ff5fdf1e8780df5370696-f50ce-hlk5n] [609_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0008' from sub-workflow 'CallGenome'
[2026-06-05T13:59:56.374263Z] [nf-c6d3485ff01ff5fdf1e8780df5370696-f50ce-hlk5n] [609_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0008] Task initiated on local node
[2026-06-05T13:59:56.436761Z] [nf-c6d3485ff01ff5fdf1e8780df5370696-f50ce-hlk5n] [609_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0008' launched from sub-workflow 'CallGenome'
[2026-06-05T13:59:56.500964Z] [nf-c6d3485ff01ff5fdf1e8780df5370696-f50ce-hlk5n] [609_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0004' launched from sub-workflow 'CallGenome'
[2026-06-05T13:59:56.501573Z] [nf-c6d3485ff01ff5fdf1e8780df5370696-f50ce-hlk5n] [609_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0004' from sub-workflow 'CallGenome'
[2026-06-05T13:59:56.505163Z] [nf-c6d3485ff01ff5fdf1e8780df5370696-f50ce-hlk5n] [609_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0004] Task initiated on local node
[2026-06-05T13:59:56.566479Z] [nf-c6d3485ff01ff5fdf1e8780df5370696-f50ce-hlk5n] [609_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0004' launched from sub-workflow 'CallGenome'
[2026-06-05T13:59:56.630674Z] [nf-c6d3485ff01ff5fdf1e8780df5370696-f50ce-hlk5n] [609_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0018' launched from sub-workflow 'CallGenome'
[2026-06-05T13:59:56.631291Z] [nf-c6d3485ff01ff5fdf1e8780df5370696-f50ce-hlk5n] [609_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0018' from sub-workflow 'CallGenome'
[2026-06-05T13:59:56.634206Z] [nf-c6d3485ff01ff5fdf1e8780df5370696-f50ce-hlk5n] [609_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0018] Task initiated on local node
[2026-06-05T13:59:56.695577Z] [nf-c6d3485ff01ff5fdf1e8780df5370696-f50ce-hlk5n] [609_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0018' launched from sub-workflow 'CallGenome'
[2026-06-05T13:59:56.860495Z] [nf-c6d3485ff01ff5fdf1e8780df5370696-f50ce-hlk5n] [609_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0001' launched from sub-workflow 'CallGenome'
[2026-06-05T13:59:56.860980Z] [nf-c6d3485ff01ff5fdf1e8780df5370696-f50ce-hlk5n] [609_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0001' from sub-workflow 'CallGenome'
[2026-06-05T13:59:56.863912Z] [nf-c6d3485ff01ff5fdf1e8780df5370696-f50ce-hlk5n] [609_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0001] Task initiated on local node
[2026-06-05T13:59:56.925474Z] [nf-c6d3485ff01ff5fdf1e8780df5370696-f50ce-hlk5n] [609_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0001' launched from sub-workflow 'CallGenome'
[2026-06-05T13:59:56.925575Z] [nf-c6d3485ff01ff5fdf1e8780df5370696-f50ce-hlk5n] [609_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0002' launched from sub-workflow 'CallGenome'
[2026-06-05T13:59:56.926068Z] [nf-c6d3485ff01ff5fdf1e8780df5370696-f50ce-hlk5n] [609_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0002' from sub-workflow 'CallGenome'
[2026-06-05T13:59:56.929156Z] [nf-c6d3485ff01ff5fdf1e8780df5370696-f50ce-hlk5n] [609_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0002] Task initiated on local node
[2026-06-05T13:59:56.990792Z] [nf-c6d3485ff01ff5fdf1e8780df5370696-f50ce-hlk5n] [609_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0002' launched from sub-workflow 'CallGenome'
[2026-06-05T13:59:57.255590Z] [nf-c6d3485ff01ff5fdf1e8780df5370696-f50ce-hlk5n] [609_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0015' launched from sub-workflow 'CallGenome'
[2026-06-05T13:59:57.256139Z] [nf-c6d3485ff01ff5fdf1e8780df5370696-f50ce-hlk5n] [609_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0015' from sub-workflow 'CallGenome'
[2026-06-05T13:59:57.259475Z] [nf-c6d3485ff01ff5fdf1e8780df5370696-f50ce-hlk5n] [609_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0015] Task initiated on local node
[2026-06-05T13:59:57.320479Z] [nf-c6d3485ff01ff5fdf1e8780df5370696-f50ce-hlk5n] [609_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0015' launched from sub-workflow 'CallGenome'
[2026-06-05T13:59:57.320912Z] [nf-c6d3485ff01ff5fdf1e8780df5370696-f50ce-hlk5n] [609_1] [TaskManager] Completed command task: 'CallGenome+completedAllGenomeSegments' launched from sub-workflow 'CallGenome'
[2026-06-05T13:59:57.321148Z] [nf-c6d3485ff01ff5fdf1e8780df5370696-f50ce-hlk5n] [609_1] [TaskManager] Launching command task: 'CallGenome+mergeRunStats' from sub-workflow 'CallGenome'
[2026-06-05T13:59:57.322070Z] [nf-c6d3485ff01ff5fdf1e8780df5370696-f50ce-hlk5n] [609_1] [TaskManager] Launching command task: 'CallGenome+SNV_concat_vcf' from sub-workflow 'CallGenome'
[2026-06-05T13:59:57.322894Z] [nf-c6d3485ff01ff5fdf1e8780df5370696-f50ce-hlk5n] [609_1] [TaskManager] Launching command task: 'CallGenome+Indel_concat_vcf' from sub-workflow 'CallGenome'
[2026-06-05T13:59:57.326728Z] [nf-c6d3485ff01ff5fdf1e8780df5370696-f50ce-hlk5n] [609_1] [TaskRunner:CallGenome+SNV_concat_vcf] Task initiated on local node
[2026-06-05T13:59:57.328008Z] [nf-c6d3485ff01ff5fdf1e8780df5370696-f50ce-hlk5n] [609_1] [TaskRunner:CallGenome+Indel_concat_vcf] Task initiated on local node
[2026-06-05T13:59:57.329746Z] [nf-c6d3485ff01ff5fdf1e8780df5370696-f50ce-hlk5n] [609_1] [TaskRunner:CallGenome+mergeRunStats] Task initiated on local node
[2026-06-05T13:59:57.356867Z] [nf-c6d3485ff01ff5fdf1e8780df5370696-f50ce-hlk5n] [609_1] [TaskManager] Completed command task: 'CallGenome+SNV_concat_vcf' launched from sub-workflow 'CallGenome'
[2026-06-05T13:59:57.357187Z] [nf-c6d3485ff01ff5fdf1e8780df5370696-f50ce-hlk5n] [609_1] [TaskManager] Launching command task: 'CallGenome+SNV_index_vcf' from sub-workflow 'CallGenome'
[2026-06-05T13:59:57.359605Z] [nf-c6d3485ff01ff5fdf1e8780df5370696-f50ce-hlk5n] [609_1] [TaskManager] Completed command task: 'CallGenome+Indel_concat_vcf' launched from sub-workflow 'CallGenome'
[2026-06-05T13:59:57.359704Z] [nf-c6d3485ff01ff5fdf1e8780df5370696-f50ce-hlk5n] [609_1] [TaskManager] Completed command task: 'CallGenome+mergeRunStats' launched from sub-workflow 'CallGenome'
[2026-06-05T13:59:57.359991Z] [nf-c6d3485ff01ff5fdf1e8780df5370696-f50ce-hlk5n] [609_1] [TaskManager] Launching command task: 'CallGenome+Indel_index_vcf' from sub-workflow 'CallGenome'
[2026-06-05T13:59:57.360636Z] [nf-c6d3485ff01ff5fdf1e8780df5370696-f50ce-hlk5n] [609_1] [TaskRunner:CallGenome+SNV_index_vcf] Task initiated on local node
[2026-06-05T13:59:57.363042Z] [nf-c6d3485ff01ff5fdf1e8780df5370696-f50ce-hlk5n] [609_1] [TaskRunner:CallGenome+Indel_index_vcf] Task initiated on local node
[2026-06-05T13:59:57.392469Z] [nf-c6d3485ff01ff5fdf1e8780df5370696-f50ce-hlk5n] [609_1] [TaskManager] Completed command task: 'CallGenome+Indel_index_vcf' launched from sub-workflow 'CallGenome'
[2026-06-05T13:59:57.392558Z] [nf-c6d3485ff01ff5fdf1e8780df5370696-f50ce-hlk5n] [609_1] [TaskManager] Completed command task: 'CallGenome+SNV_index_vcf' launched from sub-workflow 'CallGenome'
[2026-06-05T13:59:57.392791Z] [nf-c6d3485ff01ff5fdf1e8780df5370696-f50ce-hlk5n] [609_1] [TaskManager] Launching command task: 'CallGenome+removeTmpDir' from sub-workflow 'CallGenome'
[2026-06-05T13:59:57.395478Z] [nf-c6d3485ff01ff5fdf1e8780df5370696-f50ce-hlk5n] [609_1] [TaskRunner:CallGenome+removeTmpDir] Task initiated on local node
[2026-06-05T13:59:57.424912Z] [nf-c6d3485ff01ff5fdf1e8780df5370696-f50ce-hlk5n] [609_1] [TaskManager] Completed command task: 'CallGenome+removeTmpDir' launched from sub-workflow 'CallGenome'
[2026-06-05T13:59:59.643639Z] [nf-c6d3485ff01ff5fdf1e8780df5370696-f50ce-hlk5n] [609_1] [TaskManager] Completed sub-workflow task: 'CallGenome' launched from master workflow
[2026-06-05T14:00:07.945440Z] [nf-c6d3485ff01ff5fdf1e8780df5370696-f50ce-hlk5n] [609_1] [WorkflowRunner] Strelka somatic workflow successfully completed.
[2026-06-05T14:00:07.945440Z] [nf-c6d3485ff01ff5fdf1e8780df5370696-f50ce-hlk5n] [609_1] [WorkflowRunner] 
[2026-06-05T14:00:07.945440Z] [nf-c6d3485ff01ff5fdf1e8780df5370696-f50ce-hlk5n] [609_1] [WorkflowRunner] 	workflow version: 2.9.10
[2026-06-05T14:00:07.945517Z] [nf-c6d3485ff01ff5fdf1e8780df5370696-f50ce-hlk5n] [609_1] [WorkflowRunner] 
[2026-06-05T14:00:07.945526Z] [nf-c6d3485ff01ff5fdf1e8780df5370696-f50ce-hlk5n] [609_1] [WorkflowRunner] Workflow successfully completed all tasks
[2026-06-05T14:00:07.945533Z] [nf-c6d3485ff01ff5fdf1e8780df5370696-f50ce-hlk5n] [609_1] [WorkflowRunner] Elapsed time for full workflow: 18 sec