cmdline: /opt/conda/share/sentieon-202308.03-3/libexec/driver -t 31 -r Homo_sapiens_assembly38.fasta -i HCC1395_tumor.md.bam --interval xgen-exome-hyb-panel-v2-targets-hg38_AND_altera_v3_targets_postQC_hg38_AND_foresight_clarity.bed --algo QualCal -k dbsnp_146.hg38.vcf.gz -k Mills_and_1000G_gold_standard.indels.hg38.vcf.gz -k Homo_sapiens_assembly38.known_indels.vcf.gz HCC1395_tumor.table
This software is licensed to bgold@natera.com by Sentieon Inc.
progress 5% @chr1:119911554, elapsed 0.1s, est remaining 1.2s, peak mem 160MB, user 0.0s, sys 0.0s, output queue size 256
progress 10% @chr2:19945786, elapsed 0.1s, est remaining 1.1s, peak mem 160MB, user 0.0s, sys 0.0s, output queue size 358
progress 15% @chr2:189057320, elapsed 0.2s, est remaining 1.1s, peak mem 160MB, user 0.0s, sys 0.0s, output queue size 84
progress 20% @chr3:97912167, elapsed 0.3s, est remaining 1.0s, peak mem 160MB, user 0.0s, sys 0.0s, output queue size 96
progress 25% @chr4:88463532, elapsed 0.3s, est remaining 1.0s, peak mem 163MB, user 0.0s, sys 0.0s, output queue size 433
progress 30% @chr5:146514854, elapsed 0.4s, est remaining 0.9s, peak mem 169MB, user 0.0s, sys 0.0s, output queue size 129
progress 35% @chr6:127314816, elapsed 0.5s, est remaining 0.8s, peak mem 169MB, user 0.0s, sys 0.0s, output queue size 1343
progress 40% @chr7:128805761, elapsed 0.5s, est remaining 0.8s, peak mem 169MB, user 0.0s, sys 0.0s, output queue size 3001
progress 45% @chr9:738285, elapsed 0.6s, est remaining 0.7s, peak mem 340MB, user 0.0s, sys 0.1s, output queue size 7261
progress 50% @chr10:32929822, elapsed 0.6s, est remaining 0.6s, peak mem 340MB, user 0.0s, sys 0.1s, output queue size 4208
progress 55% @chr11:48306223, elapsed 0.7s, est remaining 0.6s, peak mem 340MB, user 0.0s, sys 0.1s, output queue size 14628
progress 60% @chr12:21915668, elapsed 0.8s, est remaining 0.5s, peak mem 349MB, user 0.0s, sys 0.1s, output queue size 24182
progress 65% @chr13:49178568, elapsed 0.8s, est remaining 0.4s, peak mem 349MB, user 0.0s, sys 0.1s, output queue size 35231
progress 70% @chr15:42684116, elapsed 0.9s, est remaining 0.4s, peak mem 358MB, user 0.0s, sys 0.1s, output queue size 45282
progress 75% @chr16:30893212, elapsed 1.0s, est remaining 0.3s, peak mem 361MB, user 0.0s, sys 0.1s, output queue size 7015
progress 80% @chr17:42543028, elapsed 1.0s, est remaining 0.3s, peak mem 361MB, user 0.0s, sys 0.1s, output queue size 17709
progress 85% @chr19:5680055, elapsed 1.1s, est remaining 0.2s, peak mem 406MB, user 0.0s, sys 0.1s, output queue size 28117
progress 90% @chr19:55613619, elapsed 1.1s, est remaining 0.1s, peak mem 406MB, user 0.0s, sys 0.1s, output queue size 37620
progress 95% @chr22:37001837, elapsed 1.6s, est remaining 0.1s, peak mem 2395MB, user 6.0s, sys 5.2s, output queue size 3220
progress 100% @chrY:57190940, elapsed 1.7s, est remaining 0.0s, peak mem 2395MB, user 6.1s, sys 5.2s, output queue size 4198
sw version: sentieon-genomics-202308.03
os version: Linux 6.12.88
cpu vendor: GenuineIntel
 signature: 000a06d1
  features: 1f8bfbff fffab20b
  extended: f1bf27eb 1b407f7e
  amd bits: 2c100800 00000121
     brand: Intel(R) Xeon(R) 6975P-C
threads: 31 max 384
algo: QualCal
license: sentieon:QualCal=31
input file size: 50813900
reads: 1001320
contig: 201779 intervals 37922265 bases
advance: 208647 calls 1.671 user 0.129 sys 2.279 real
done: 1 calls 0.368 user 0.140 sys 0.516 real
execute: 1 calls 0.012 user 0.000 sys 1.676 real
fetch_reads: 208647 calls 0.107 user 0.000 sys 0.177 real
fetch_ref: 2048 calls 0.004 user 0.016 sys 0.034 real
fetch_vcf: 2048 calls 0.875 user 0.053 sys 0.912 real
idle: 92 calls 0.003 user 0.001 sys 31.872 real
init: 1 calls 0.000 user 0.000 sys 0.000 real
update: 2195 calls 4.014 user 4.976 sys 9.676 real
overall: 2511523840 mem 10.115 user 15.592 sys 3.062 real
ls: cannot access '*.table.post': No such file or directory
ls: cannot access '*.recalibrated.bam': No such file or directory
ls: cannot access '*.recalibrated.bam.bai': No such file or directory
ls: cannot access '*.csv': No such file or directory
ls: cannot access '*.pdf': No such file or directory