cmdline: /opt/conda/share/sentieon-202308.03-3/libexec/driver -r Homo_sapiens_assembly38.fasta -t 12 --interval chr14_64122012-64122133.bed.gz -i Sig_18_Blood.recalibrated.bam --algo Haplotyper -d dbsnp_146.hg38.vcf.gz --emit_mode variant germline_control_2.haplotyper.chr14_64122012-64122133.bed.unfiltered.vcf.gz
This software is licensed to bgold@natera.com by Sentieon Inc.
progress 5% @chr14:100880712, elapsed 0.0s, est remaining 0.8s, peak mem 75MB, user 0.0s, sys 0.1s, output queue size 770
progress 10% @chr15:40895938, elapsed 0.1s, est remaining 0.7s, peak mem 78MB, user 0.1s, sys 0.2s, output queue size 3015
progress 15% @chr15:63774694, elapsed 0.1s, est remaining 0.8s, peak mem 90MB, user 0.1s, sys 0.4s, output queue size 5633
progress 20% @chr15:87989891, elapsed 0.2s, est remaining 0.8s, peak mem 99MB, user 0.2s, sys 0.7s, output queue size 7917
progress 25% @chr16:1941257, elapsed 0.2s, est remaining 0.7s, peak mem 108MB, user 0.2s, sys 0.9s, output queue size 9604
progress 30% @chr16:23482923, elapsed 0.3s, est remaining 0.7s, peak mem 117MB, user 0.2s, sys 1.1s, output queue size 12083
progress 35% @chr16:66608309, elapsed 0.3s, est remaining 0.6s, peak mem 126MB, user 0.3s, sys 1.4s, output queue size 14697
progress 40% @chr16:89270813, elapsed 0.4s, est remaining 0.6s, peak mem 132MB, user 0.3s, sys 1.6s, output queue size 17165
progress 45% @chr17:10309234, elapsed 0.5s, est remaining 0.6s, peak mem 150MB, user 0.4s, sys 1.9s, output queue size 19777
progress 50% @chr17:36333876, elapsed 0.5s, est remaining 0.5s, peak mem 150MB, user 0.4s, sys 2.2s, output queue size 22381
progress 55% @chr17:45115094, elapsed 0.6s, est remaining 0.5s, peak mem 162MB, user 0.4s, sys 2.4s, output queue size 24614
progress 60% @chr17:68429996, elapsed 0.7s, est remaining 0.4s, peak mem 174MB, user 0.5s, sys 2.7s, output queue size 27152
progress 65% @chr18:5890198, elapsed 0.7s, est remaining 0.4s, peak mem 177MB, user 0.5s, sys 2.9s, output queue size 29866
progress 70% @chr18:62570103, elapsed 0.8s, est remaining 0.3s, peak mem 192MB, user 0.6s, sys 3.0s, output queue size 32246
progress 75% @chr19:6926366, elapsed 0.8s, est remaining 0.3s, peak mem 201MB, user 0.7s, sys 3.2s, output queue size 34634
progress 80% @chr19:15264404, elapsed 0.9s, est remaining 0.2s, peak mem 213MB, user 0.7s, sys 3.4s, output queue size 1277
progress 85% @chr19:36996317, elapsed 1.0s, est remaining 0.2s, peak mem 219MB, user 0.8s, sys 3.6s, output queue size 3594
progress 90% @chr19:46493558, elapsed 1.0s, est remaining 0.1s, peak mem 228MB, user 0.8s, sys 3.6s, output queue size 5762
progress 95% @chr20:36934998, elapsed 1.1s, est remaining 0.1s, peak mem 246MB, user 0.9s, sys 3.9s, output queue size 8401
progress 100% @chr20:62324080, elapsed 1.1s, est remaining 0.0s, peak mem 246MB, user 0.9s, sys 4.0s, output queue size 10839
sw version: sentieon-genomics-202308.03
os version: Linux 6.12.88
cpu vendor: GenuineIntel
 signature: 000a06d1
  features: 1f8bfbff fffab20b
  extended: f1bf27eb 1b407f7e
  amd bits: 2c100800 00000121
     brand: Intel(R) Xeon(R) 6975P-C
threads: 12 max 384
algo: Haplotyper
license: sentieon:Haplotyper=12
input file size: 74586803
output file size: 22310
reads: 1001133
contig: 48152 intervals 9000028 bases
active: 97912 calls 0.006 user 0.002 sys 0.018 real
advance: 49760 calls 0.021 user 0.011 sys 0.024 real
calc: 97912 calls 0.000 user 0.000 sys 0.018 real
done: 1 calls 0.000 user 0.000 sys 0.002 real
execute: 1 calls 0.004 user 0.002 sys 1.968 real
fetch: 97912 calls 0.000 user 0.004 sys 0.018 real
fetch_ref: 97912 calls 0.090 user 0.058 sys 0.363 real
idle: 39 calls 0.004 user 0.027 sys 22.797 real
init: 1 calls 0.030 user 0.020 sys 0.043 real
region: 97912 calls 0.000 user 0.006 sys 0.022 real
tracker: 97912 calls 0.017 user 0.006 sys 0.088 real
overall: 258084864 mem 1.601 user 6.427 sys 3.081 real
ls: cannot access '*.g.vcf.gz': No such file or directory
ls: cannot access '*.g.vcf.gz.tbi': No such file or directory