mkdir -p failed for path /.config/matplotlib: [Errno 13] Permission denied: '/.config'
Matplotlib created a temporary cache directory at /tmp/matplotlib-64uae21z because there was an issue with the default path (/.config/matplotlib); it is highly recommended to set the MPLCONFIGDIR environment variable to a writable directory, in particular to speed up the import of Matplotlib and to better support multiprocessing.
2026-06-05 14:03:09,476 - cnv_pipe.batch.jax_config - INFO - Setting JAX backend to 'cpu'
2026-06-05 14:03:10,383 - cnv_pipe.batch.run_model - INFO - JAX devices = [CpuDevice(id=0)]
2026-06-05 14:03:10,551 - cnv_pipe.batch.run_model - INFO - Loading counts from counts_1.parquet
2026-06-05 14:03:11,511 - cnv_pipe.batch.run_model - INFO - Loaded data with 4 samples
2026-06-05 14:03:11,684 - cnv_pipe.batch.run_model - INFO - Processing cluster 553 with 177 probes
2026-06-05 14:03:12,080 - cnv_pipe.batch.run_model.cluster553 - INFO - Child process started for cluster 553 with 177 probes
2026-06-05 14:04:07,382 - cnv_pipe.batch.run_model.cluster553 - INFO - Child process finished cluster 553. Wrote cluster_553_samples.csv and cluster_553_params.csv
2026-06-05 14:04:07,383 - cnv_pipe.batch.run_model - INFO - Cluster 553 finished in 55.70 seconds. Status: SUCCESS