File Info

Filename
.command.err
Full Path
s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/c0/0279134524a56b7509714b39d519f1/.command.err
Size
53.7 KB
Task
DAQ:CONTROL_VARIANT_CALLING:CONTROL_SOMATIC_VC:BAM_VARIANT_CALLING_SOMATIC_STRELKA:STRELKA_SOMATIC (negative_somatic_control_2;chr16_25246607-25247490.bed)
Attempt

Content

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[2026-06-05T14:00:03.839755Z] [nf-c00279134524a56b7509714b39d519f1-0a272-rqb54] [605_1] [WorkflowRunner] Initiating pyFlow run
[2026-06-05T14:00:03.840417Z] [nf-c00279134524a56b7509714b39d519f1-0a272-rqb54] [605_1] [WorkflowRunner] pyFlowClientWorkflowClass: StrelkaSomaticWorkflow
[2026-06-05T14:00:03.840428Z] [nf-c00279134524a56b7509714b39d519f1-0a272-rqb54] [605_1] [WorkflowRunner] pyFlowVersion: 1.1.20
[2026-06-05T14:00:03.840433Z] [nf-c00279134524a56b7509714b39d519f1-0a272-rqb54] [605_1] [WorkflowRunner] pythonVersion: 2.7.15.final.0
[2026-06-05T14:00:03.840437Z] [nf-c00279134524a56b7509714b39d519f1-0a272-rqb54] [605_1] [WorkflowRunner] WorkingDir: '/tmp/nxf.XXXXaxn2FB'
[2026-06-05T14:00:03.840441Z] [nf-c00279134524a56b7509714b39d519f1-0a272-rqb54] [605_1] [WorkflowRunner] ProcessCmdLine: '/var/tmp/strelka/runWorkflow.py -m local -j 8'
[2026-06-05T14:00:03.840446Z] [nf-c00279134524a56b7509714b39d519f1-0a272-rqb54] [605_1] [WorkflowRunner] [RunParameters] mode: local
[2026-06-05T14:00:03.840450Z] [nf-c00279134524a56b7509714b39d519f1-0a272-rqb54] [605_1] [WorkflowRunner] [RunParameters] nCores: 8
[2026-06-05T14:00:03.840453Z] [nf-c00279134524a56b7509714b39d519f1-0a272-rqb54] [605_1] [WorkflowRunner] [RunParameters] memMb: 3047507
[2026-06-05T14:00:03.840457Z] [nf-c00279134524a56b7509714b39d519f1-0a272-rqb54] [605_1] [WorkflowRunner] [RunParameters] dataDir: /var/tmp/strelka/workspace/pyflow.data
[2026-06-05T14:00:03.840461Z] [nf-c00279134524a56b7509714b39d519f1-0a272-rqb54] [605_1] [WorkflowRunner] [RunParameters] isDryRun: False
[2026-06-05T14:00:03.840473Z] [nf-c00279134524a56b7509714b39d519f1-0a272-rqb54] [605_1] [WorkflowRunner] [RunParameters] isContinue: False
[2026-06-05T14:00:03.840483Z] [nf-c00279134524a56b7509714b39d519f1-0a272-rqb54] [605_1] [WorkflowRunner] [RunParameters] isForceContinue: True
[2026-06-05T14:00:03.840493Z] [nf-c00279134524a56b7509714b39d519f1-0a272-rqb54] [605_1] [WorkflowRunner] [RunParameters] mailTo: ''
[2026-06-05T14:00:03.840984Z] [nf-c00279134524a56b7509714b39d519f1-0a272-rqb54] [605_1] [TaskRunner:masterWorkflow] Starting task specification for master workflow
[2026-06-05T14:00:03.841080Z] [nf-c00279134524a56b7509714b39d519f1-0a272-rqb54] [605_1] [StrelkaSomaticWorkflow] Initiating Strelka somatic workflow version: 2.9.10
[2026-06-05T14:00:03.847379Z] [nf-c00279134524a56b7509714b39d519f1-0a272-rqb54] [605_1] [WorkflowRunner] Adding sub-workflow task 'CallGenome' to master workflow
[2026-06-05T14:00:03.848733Z] [nf-c00279134524a56b7509714b39d519f1-0a272-rqb54] [605_1] [TaskRunner:masterWorkflow] Finished task specification for master workflow
[2026-06-05T14:00:03.849009Z] [nf-c00279134524a56b7509714b39d519f1-0a272-rqb54] [605_1] [TaskManager] Launching sub-workflow task: 'CallGenome' from master workflow
[2026-06-05T14:00:03.849412Z] [nf-c00279134524a56b7509714b39d519f1-0a272-rqb54] [605_1] [TaskRunner:CallGenome] Starting task specification for sub-workflow
[2026-06-05T14:00:03.849988Z] [nf-c00279134524a56b7509714b39d519f1-0a272-rqb54] [605_1] [WorkflowRunner] Adding command task 'CallGenome+makeTmpDir' to sub-workflow 'CallGenome'
[2026-06-05T14:00:03.851138Z] [nf-c00279134524a56b7509714b39d519f1-0a272-rqb54] [605_1] [TaskManager] Launching command task: 'CallGenome+makeTmpDir' from sub-workflow 'CallGenome'
[2026-06-05T14:00:03.851509Z] [nf-c00279134524a56b7509714b39d519f1-0a272-rqb54] [605_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_015_chr16_0000' to sub-workflow 'CallGenome'
[2026-06-05T14:00:03.851753Z] [nf-c00279134524a56b7509714b39d519f1-0a272-rqb54] [605_1] [WorkflowRunner] Adding command task 'CallGenome+fixVcfHeader_chromId_015_chr16_0000' to sub-workflow 'CallGenome'
[2026-06-05T14:00:03.851888Z] [nf-c00279134524a56b7509714b39d519f1-0a272-rqb54] [605_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_015_chr16_0000' to sub-workflow 'CallGenome'
[2026-06-05T14:00:03.852218Z] [nf-c00279134524a56b7509714b39d519f1-0a272-rqb54] [605_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_015_chr16_0001' to sub-workflow 'CallGenome'
[2026-06-05T14:00:03.852374Z] [nf-c00279134524a56b7509714b39d519f1-0a272-rqb54] [605_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_015_chr16_0001' to sub-workflow 'CallGenome'
[2026-06-05T14:00:03.853927Z] [nf-c00279134524a56b7509714b39d519f1-0a272-rqb54] [605_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_015_chr16_0002' to sub-workflow 'CallGenome'
[2026-06-05T14:00:03.854340Z] [nf-c00279134524a56b7509714b39d519f1-0a272-rqb54] [605_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_015_chr16_0002' to sub-workflow 'CallGenome'
[2026-06-05T14:00:03.854687Z] [nf-c00279134524a56b7509714b39d519f1-0a272-rqb54] [605_1] [TaskRunner:CallGenome+makeTmpDir] Task initiated on local node
[2026-06-05T14:00:03.855003Z] [nf-c00279134524a56b7509714b39d519f1-0a272-rqb54] [605_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_015_chr16_0003' to sub-workflow 'CallGenome'
[2026-06-05T14:00:03.855087Z] [nf-c00279134524a56b7509714b39d519f1-0a272-rqb54] [605_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_015_chr16_0003' to sub-workflow 'CallGenome'
[2026-06-05T14:00:03.855207Z] [nf-c00279134524a56b7509714b39d519f1-0a272-rqb54] [605_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_015_chr16_0004' to sub-workflow 'CallGenome'
[2026-06-05T14:00:03.855273Z] [nf-c00279134524a56b7509714b39d519f1-0a272-rqb54] [605_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_015_chr16_0004' to sub-workflow 'CallGenome'
[2026-06-05T14:00:03.855386Z] [nf-c00279134524a56b7509714b39d519f1-0a272-rqb54] [605_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_015_chr16_0005' to sub-workflow 'CallGenome'
[2026-06-05T14:00:03.855451Z] [nf-c00279134524a56b7509714b39d519f1-0a272-rqb54] [605_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_015_chr16_0005' to sub-workflow 'CallGenome'
[2026-06-05T14:00:03.855561Z] [nf-c00279134524a56b7509714b39d519f1-0a272-rqb54] [605_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_015_chr16_0006' to sub-workflow 'CallGenome'
[2026-06-05T14:00:03.855763Z] [nf-c00279134524a56b7509714b39d519f1-0a272-rqb54] [605_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_015_chr16_0006' to sub-workflow 'CallGenome'
[2026-06-05T14:00:03.856126Z] [nf-c00279134524a56b7509714b39d519f1-0a272-rqb54] [605_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_015_chr16_0007' to sub-workflow 'CallGenome'
[2026-06-05T14:00:03.856193Z] [nf-c00279134524a56b7509714b39d519f1-0a272-rqb54] [605_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_015_chr16_0007' to sub-workflow 'CallGenome'
[2026-06-05T14:00:03.856365Z] [nf-c00279134524a56b7509714b39d519f1-0a272-rqb54] [605_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_016_chr17_0000' to sub-workflow 'CallGenome'
[2026-06-05T14:00:03.856434Z] [nf-c00279134524a56b7509714b39d519f1-0a272-rqb54] [605_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_016_chr17_0000' to sub-workflow 'CallGenome'
[2026-06-05T14:00:03.856548Z] [nf-c00279134524a56b7509714b39d519f1-0a272-rqb54] [605_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_016_chr17_0001' to sub-workflow 'CallGenome'
[2026-06-05T14:00:03.856618Z] [nf-c00279134524a56b7509714b39d519f1-0a272-rqb54] [605_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_016_chr17_0001' to sub-workflow 'CallGenome'
[2026-06-05T14:00:03.856730Z] [nf-c00279134524a56b7509714b39d519f1-0a272-rqb54] [605_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_016_chr17_0002' to sub-workflow 'CallGenome'
[2026-06-05T14:00:03.856841Z] [nf-c00279134524a56b7509714b39d519f1-0a272-rqb54] [605_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_016_chr17_0002' to sub-workflow 'CallGenome'
[2026-06-05T14:00:03.856999Z] [nf-c00279134524a56b7509714b39d519f1-0a272-rqb54] [605_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_016_chr17_0003' to sub-workflow 'CallGenome'
[2026-06-05T14:00:03.857093Z] [nf-c00279134524a56b7509714b39d519f1-0a272-rqb54] [605_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_016_chr17_0003' to sub-workflow 'CallGenome'
[2026-06-05T14:00:03.857360Z] [nf-c00279134524a56b7509714b39d519f1-0a272-rqb54] [605_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_016_chr17_0004' to sub-workflow 'CallGenome'
[2026-06-05T14:00:03.857687Z] [nf-c00279134524a56b7509714b39d519f1-0a272-rqb54] [605_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_016_chr17_0004' to sub-workflow 'CallGenome'
[2026-06-05T14:00:03.857801Z] [nf-c00279134524a56b7509714b39d519f1-0a272-rqb54] [605_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_016_chr17_0005' to sub-workflow 'CallGenome'
[2026-06-05T14:00:03.857877Z] [nf-c00279134524a56b7509714b39d519f1-0a272-rqb54] [605_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_016_chr17_0005' to sub-workflow 'CallGenome'
[2026-06-05T14:00:03.857996Z] [nf-c00279134524a56b7509714b39d519f1-0a272-rqb54] [605_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_016_chr17_0006' to sub-workflow 'CallGenome'
[2026-06-05T14:00:03.858061Z] [nf-c00279134524a56b7509714b39d519f1-0a272-rqb54] [605_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_016_chr17_0006' to sub-workflow 'CallGenome'
[2026-06-05T14:00:03.858170Z] [nf-c00279134524a56b7509714b39d519f1-0a272-rqb54] [605_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_017_chr18_0000' to sub-workflow 'CallGenome'
[2026-06-05T14:00:03.858242Z] [nf-c00279134524a56b7509714b39d519f1-0a272-rqb54] [605_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_017_chr18_0000' to sub-workflow 'CallGenome'
[2026-06-05T14:00:03.858355Z] [nf-c00279134524a56b7509714b39d519f1-0a272-rqb54] [605_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_017_chr18_0001' to sub-workflow 'CallGenome'
[2026-06-05T14:00:03.858417Z] [nf-c00279134524a56b7509714b39d519f1-0a272-rqb54] [605_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_017_chr18_0001' to sub-workflow 'CallGenome'
[2026-06-05T14:00:03.858524Z] [nf-c00279134524a56b7509714b39d519f1-0a272-rqb54] [605_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_017_chr18_0002' to sub-workflow 'CallGenome'
[2026-06-05T14:00:03.858645Z] [nf-c00279134524a56b7509714b39d519f1-0a272-rqb54] [605_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_017_chr18_0002' to sub-workflow 'CallGenome'
[2026-06-05T14:00:03.859019Z] [nf-c00279134524a56b7509714b39d519f1-0a272-rqb54] [605_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_017_chr18_0003' to sub-workflow 'CallGenome'
[2026-06-05T14:00:03.859404Z] [nf-c00279134524a56b7509714b39d519f1-0a272-rqb54] [605_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_017_chr18_0003' to sub-workflow 'CallGenome'
[2026-06-05T14:00:03.859521Z] [nf-c00279134524a56b7509714b39d519f1-0a272-rqb54] [605_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_017_chr18_0004' to sub-workflow 'CallGenome'
[2026-06-05T14:00:03.859590Z] [nf-c00279134524a56b7509714b39d519f1-0a272-rqb54] [605_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_017_chr18_0004' to sub-workflow 'CallGenome'
[2026-06-05T14:00:03.859698Z] [nf-c00279134524a56b7509714b39d519f1-0a272-rqb54] [605_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_017_chr18_0005' to sub-workflow 'CallGenome'
[2026-06-05T14:00:03.859760Z] [nf-c00279134524a56b7509714b39d519f1-0a272-rqb54] [605_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_017_chr18_0005' to sub-workflow 'CallGenome'
[2026-06-05T14:00:03.859876Z] [nf-c00279134524a56b7509714b39d519f1-0a272-rqb54] [605_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_017_chr18_0006' to sub-workflow 'CallGenome'
[2026-06-05T14:00:03.859941Z] [nf-c00279134524a56b7509714b39d519f1-0a272-rqb54] [605_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_017_chr18_0006' to sub-workflow 'CallGenome'
[2026-06-05T14:00:03.860109Z] [nf-c00279134524a56b7509714b39d519f1-0a272-rqb54] [605_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_018_chr19_0000' to sub-workflow 'CallGenome'
[2026-06-05T14:00:03.860175Z] [nf-c00279134524a56b7509714b39d519f1-0a272-rqb54] [605_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_018_chr19_0000' to sub-workflow 'CallGenome'
[2026-06-05T14:00:03.860285Z] [nf-c00279134524a56b7509714b39d519f1-0a272-rqb54] [605_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_018_chr19_0001' to sub-workflow 'CallGenome'
[2026-06-05T14:00:03.860354Z] [nf-c00279134524a56b7509714b39d519f1-0a272-rqb54] [605_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_018_chr19_0001' to sub-workflow 'CallGenome'
[2026-06-05T14:00:03.860506Z] [nf-c00279134524a56b7509714b39d519f1-0a272-rqb54] [605_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_018_chr19_0002' to sub-workflow 'CallGenome'
[2026-06-05T14:00:03.860670Z] [nf-c00279134524a56b7509714b39d519f1-0a272-rqb54] [605_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_018_chr19_0002' to sub-workflow 'CallGenome'
[2026-06-05T14:00:03.861192Z] [nf-c00279134524a56b7509714b39d519f1-0a272-rqb54] [605_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_018_chr19_0003' to sub-workflow 'CallGenome'
[2026-06-05T14:00:03.861257Z] [nf-c00279134524a56b7509714b39d519f1-0a272-rqb54] [605_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_018_chr19_0003' to sub-workflow 'CallGenome'
[2026-06-05T14:00:03.876656Z] [nf-c00279134524a56b7509714b39d519f1-0a272-rqb54] [605_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_018_chr19_0004' to sub-workflow 'CallGenome'
[2026-06-05T14:00:03.876797Z] [nf-c00279134524a56b7509714b39d519f1-0a272-rqb54] [605_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_018_chr19_0004' to sub-workflow 'CallGenome'
[2026-06-05T14:00:03.876887Z] [nf-c00279134524a56b7509714b39d519f1-0a272-rqb54] [605_1] [WorkflowRunner] Adding command task 'CallGenome+completedAllGenomeSegments' to sub-workflow 'CallGenome'
[2026-06-05T14:00:03.877052Z] [nf-c00279134524a56b7509714b39d519f1-0a272-rqb54] [605_1] [WorkflowRunner] Adding command task 'CallGenome+SNV_concat_vcf' to sub-workflow 'CallGenome'
[2026-06-05T14:00:03.877142Z] [nf-c00279134524a56b7509714b39d519f1-0a272-rqb54] [605_1] [WorkflowRunner] Adding command task 'CallGenome+SNV_index_vcf' to sub-workflow 'CallGenome'
[2026-06-05T14:00:03.877239Z] [nf-c00279134524a56b7509714b39d519f1-0a272-rqb54] [605_1] [WorkflowRunner] Adding command task 'CallGenome+Indel_concat_vcf' to sub-workflow 'CallGenome'
[2026-06-05T14:00:03.877341Z] [nf-c00279134524a56b7509714b39d519f1-0a272-rqb54] [605_1] [WorkflowRunner] Adding command task 'CallGenome+Indel_index_vcf' to sub-workflow 'CallGenome'
[2026-06-05T14:00:03.877467Z] [nf-c00279134524a56b7509714b39d519f1-0a272-rqb54] [605_1] [WorkflowRunner] Adding command task 'CallGenome+mergeRunStats' to sub-workflow 'CallGenome'
[2026-06-05T14:00:03.877549Z] [nf-c00279134524a56b7509714b39d519f1-0a272-rqb54] [605_1] [WorkflowRunner] Adding command task 'CallGenome+removeTmpDir' to sub-workflow 'CallGenome'
[2026-06-05T14:00:03.877606Z] [nf-c00279134524a56b7509714b39d519f1-0a272-rqb54] [605_1] [TaskRunner:CallGenome] Finished task specification for sub-workflow
[2026-06-05T14:00:03.880156Z] [nf-c00279134524a56b7509714b39d519f1-0a272-rqb54] [605_1] [TaskManager] Completed command task: 'CallGenome+makeTmpDir' launched from sub-workflow 'CallGenome'
[2026-06-05T14:00:03.880668Z] [nf-c00279134524a56b7509714b39d519f1-0a272-rqb54] [605_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_017_chr18_0003' from sub-workflow 'CallGenome'
[2026-06-05T14:00:03.880958Z] [nf-c00279134524a56b7509714b39d519f1-0a272-rqb54] [605_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_016_chr17_0006' from sub-workflow 'CallGenome'
[2026-06-05T14:00:03.882083Z] [nf-c00279134524a56b7509714b39d519f1-0a272-rqb54] [605_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_015_chr16_0001' from sub-workflow 'CallGenome'
[2026-06-05T14:00:03.882945Z] [nf-c00279134524a56b7509714b39d519f1-0a272-rqb54] [605_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_018_chr19_0001' from sub-workflow 'CallGenome'
[2026-06-05T14:00:03.883702Z] [nf-c00279134524a56b7509714b39d519f1-0a272-rqb54] [605_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_017_chr18_0006' from sub-workflow 'CallGenome'
[2026-06-05T14:00:03.884860Z] [nf-c00279134524a56b7509714b39d519f1-0a272-rqb54] [605_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_017_chr18_0001' from sub-workflow 'CallGenome'
[2026-06-05T14:00:03.887102Z] [nf-c00279134524a56b7509714b39d519f1-0a272-rqb54] [605_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_015_chr16_0006' from sub-workflow 'CallGenome'
[2026-06-05T14:00:03.889046Z] [nf-c00279134524a56b7509714b39d519f1-0a272-rqb54] [605_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_018_chr19_0003' from sub-workflow 'CallGenome'
[2026-06-05T14:00:03.892341Z] [nf-c00279134524a56b7509714b39d519f1-0a272-rqb54] [605_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_017_chr18_0003] Task initiated on local node
[2026-06-05T14:00:03.895655Z] [nf-c00279134524a56b7509714b39d519f1-0a272-rqb54] [605_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_016_chr17_0006] Task initiated on local node
[2026-06-05T14:00:03.899267Z] [nf-c00279134524a56b7509714b39d519f1-0a272-rqb54] [605_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_015_chr16_0001] Task initiated on local node
[2026-06-05T14:00:03.901793Z] [nf-c00279134524a56b7509714b39d519f1-0a272-rqb54] [605_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_018_chr19_0001] Task initiated on local node
[2026-06-05T14:00:03.907482Z] [nf-c00279134524a56b7509714b39d519f1-0a272-rqb54] [605_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_015_chr16_0006] Task initiated on local node
[2026-06-05T14:00:03.909075Z] [nf-c00279134524a56b7509714b39d519f1-0a272-rqb54] [605_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_017_chr18_0006] Task initiated on local node
[2026-06-05T14:00:03.913943Z] [nf-c00279134524a56b7509714b39d519f1-0a272-rqb54] [605_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_018_chr19_0003] Task initiated on local node
[2026-06-05T14:00:03.914586Z] [nf-c00279134524a56b7509714b39d519f1-0a272-rqb54] [605_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_017_chr18_0001] Task initiated on local node
[2026-06-05T14:00:04.012339Z] [nf-c00279134524a56b7509714b39d519f1-0a272-rqb54] [605_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_015_chr16_0001' launched from sub-workflow 'CallGenome'
[2026-06-05T14:00:04.012422Z] [nf-c00279134524a56b7509714b39d519f1-0a272-rqb54] [605_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_018_chr19_0003' launched from sub-workflow 'CallGenome'
[2026-06-05T14:00:04.013058Z] [nf-c00279134524a56b7509714b39d519f1-0a272-rqb54] [605_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_015_chr16_0007' from sub-workflow 'CallGenome'
[2026-06-05T14:00:04.013855Z] [nf-c00279134524a56b7509714b39d519f1-0a272-rqb54] [605_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_018_chr19_0003' from sub-workflow 'CallGenome'
[2026-06-05T14:00:04.021325Z] [nf-c00279134524a56b7509714b39d519f1-0a272-rqb54] [605_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_018_chr19_0003] Task initiated on local node
[2026-06-05T14:00:04.024207Z] [nf-c00279134524a56b7509714b39d519f1-0a272-rqb54] [605_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_015_chr16_0007] Task initiated on local node
[2026-06-05T14:00:04.079864Z] [nf-c00279134524a56b7509714b39d519f1-0a272-rqb54] [605_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_018_chr19_0003' launched from sub-workflow 'CallGenome'
[2026-06-05T14:00:04.080678Z] [nf-c00279134524a56b7509714b39d519f1-0a272-rqb54] [605_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_015_chr16_0002' from sub-workflow 'CallGenome'
[2026-06-05T14:00:04.084664Z] [nf-c00279134524a56b7509714b39d519f1-0a272-rqb54] [605_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_015_chr16_0002] Task initiated on local node
[2026-06-05T14:00:04.998359Z] [nf-c00279134524a56b7509714b39d519f1-0a272-rqb54] [605_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_017_chr18_0001' launched from sub-workflow 'CallGenome'
[2026-06-05T14:00:04.998469Z] [nf-c00279134524a56b7509714b39d519f1-0a272-rqb54] [605_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_017_chr18_0003' launched from sub-workflow 'CallGenome'
[2026-06-05T14:00:04.999232Z] [nf-c00279134524a56b7509714b39d519f1-0a272-rqb54] [605_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_017_chr18_0002' from sub-workflow 'CallGenome'
[2026-06-05T14:00:04.999992Z] [nf-c00279134524a56b7509714b39d519f1-0a272-rqb54] [605_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_017_chr18_0000' from sub-workflow 'CallGenome'
[2026-06-05T14:00:05.003835Z] [nf-c00279134524a56b7509714b39d519f1-0a272-rqb54] [605_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_017_chr18_0002] Task initiated on local node
[2026-06-05T14:00:05.005346Z] [nf-c00279134524a56b7509714b39d519f1-0a272-rqb54] [605_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_017_chr18_0000] Task initiated on local node
[2026-06-05T14:00:05.115474Z] [nf-c00279134524a56b7509714b39d519f1-0a272-rqb54] [605_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_018_chr19_0001' launched from sub-workflow 'CallGenome'
[2026-06-05T14:00:05.116238Z] [nf-c00279134524a56b7509714b39d519f1-0a272-rqb54] [605_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_015_chr16_0003' from sub-workflow 'CallGenome'
[2026-06-05T14:00:05.120094Z] [nf-c00279134524a56b7509714b39d519f1-0a272-rqb54] [605_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_015_chr16_0003] Task initiated on local node
[2026-06-05T14:00:05.124722Z] [nf-c00279134524a56b7509714b39d519f1-0a272-rqb54] [605_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_017_chr18_0006' launched from sub-workflow 'CallGenome'
[2026-06-05T14:00:05.125417Z] [nf-c00279134524a56b7509714b39d519f1-0a272-rqb54] [605_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_016_chr17_0002' from sub-workflow 'CallGenome'
[2026-06-05T14:00:05.128699Z] [nf-c00279134524a56b7509714b39d519f1-0a272-rqb54] [605_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_016_chr17_0002] Task initiated on local node
[2026-06-05T14:00:05.190130Z] [nf-c00279134524a56b7509714b39d519f1-0a272-rqb54] [605_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_015_chr16_0003' launched from sub-workflow 'CallGenome'
[2026-06-05T14:00:05.190868Z] [nf-c00279134524a56b7509714b39d519f1-0a272-rqb54] [605_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_016_chr17_0005' from sub-workflow 'CallGenome'
[2026-06-05T14:00:05.194415Z] [nf-c00279134524a56b7509714b39d519f1-0a272-rqb54] [605_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_016_chr17_0005] Task initiated on local node
[2026-06-05T14:00:05.456307Z] [nf-c00279134524a56b7509714b39d519f1-0a272-rqb54] [605_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_015_chr16_0002' launched from sub-workflow 'CallGenome'
[2026-06-05T14:00:05.457118Z] [nf-c00279134524a56b7509714b39d519f1-0a272-rqb54] [605_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_017_chr18_0003' from sub-workflow 'CallGenome'
[2026-06-05T14:00:05.460265Z] [nf-c00279134524a56b7509714b39d519f1-0a272-rqb54] [605_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_017_chr18_0003] Task initiated on local node
[2026-06-05T14:00:05.489776Z] [nf-c00279134524a56b7509714b39d519f1-0a272-rqb54] [605_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_017_chr18_0003' launched from sub-workflow 'CallGenome'
[2026-06-05T14:00:05.490413Z] [nf-c00279134524a56b7509714b39d519f1-0a272-rqb54] [605_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_018_chr19_0001' from sub-workflow 'CallGenome'
[2026-06-05T14:00:05.493394Z] [nf-c00279134524a56b7509714b39d519f1-0a272-rqb54] [605_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_018_chr19_0001] Task initiated on local node
[2026-06-05T14:00:05.554968Z] [nf-c00279134524a56b7509714b39d519f1-0a272-rqb54] [605_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_018_chr19_0001' launched from sub-workflow 'CallGenome'
[2026-06-05T14:00:05.555652Z] [nf-c00279134524a56b7509714b39d519f1-0a272-rqb54] [605_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_015_chr16_0002' from sub-workflow 'CallGenome'
[2026-06-05T14:00:05.559280Z] [nf-c00279134524a56b7509714b39d519f1-0a272-rqb54] [605_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_015_chr16_0002] Task initiated on local node
[2026-06-05T14:00:05.620376Z] [nf-c00279134524a56b7509714b39d519f1-0a272-rqb54] [605_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_015_chr16_0002' launched from sub-workflow 'CallGenome'
[2026-06-05T14:00:05.621603Z] [nf-c00279134524a56b7509714b39d519f1-0a272-rqb54] [605_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_015_chr16_0005' from sub-workflow 'CallGenome'
[2026-06-05T14:00:05.624852Z] [nf-c00279134524a56b7509714b39d519f1-0a272-rqb54] [605_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_015_chr16_0005] Task initiated on local node
[2026-06-05T14:00:06.087040Z] [nf-c00279134524a56b7509714b39d519f1-0a272-rqb54] [605_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_015_chr16_0007' launched from sub-workflow 'CallGenome'
[2026-06-05T14:00:06.087748Z] [nf-c00279134524a56b7509714b39d519f1-0a272-rqb54] [605_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_015_chr16_0007' from sub-workflow 'CallGenome'
[2026-06-05T14:00:06.091571Z] [nf-c00279134524a56b7509714b39d519f1-0a272-rqb54] [605_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_015_chr16_0007] Task initiated on local node
[2026-06-05T14:00:06.152475Z] [nf-c00279134524a56b7509714b39d519f1-0a272-rqb54] [605_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_015_chr16_0007' launched from sub-workflow 'CallGenome'
[2026-06-05T14:00:06.153213Z] [nf-c00279134524a56b7509714b39d519f1-0a272-rqb54] [605_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_016_chr17_0003' from sub-workflow 'CallGenome'
[2026-06-05T14:00:06.156453Z] [nf-c00279134524a56b7509714b39d519f1-0a272-rqb54] [605_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_016_chr17_0003] Task initiated on local node
[2026-06-05T14:00:06.267827Z] [nf-c00279134524a56b7509714b39d519f1-0a272-rqb54] [605_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_015_chr16_0006' launched from sub-workflow 'CallGenome'
[2026-06-05T14:00:06.268531Z] [nf-c00279134524a56b7509714b39d519f1-0a272-rqb54] [605_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_017_chr18_0005' from sub-workflow 'CallGenome'
[2026-06-05T14:00:06.271868Z] [nf-c00279134524a56b7509714b39d519f1-0a272-rqb54] [605_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_017_chr18_0005] Task initiated on local node
[2026-06-05T14:00:06.433737Z] [nf-c00279134524a56b7509714b39d519f1-0a272-rqb54] [605_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_017_chr18_0000' launched from sub-workflow 'CallGenome'
[2026-06-05T14:00:06.434447Z] [nf-c00279134524a56b7509714b39d519f1-0a272-rqb54] [605_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_016_chr17_0004' from sub-workflow 'CallGenome'
[2026-06-05T14:00:06.437520Z] [nf-c00279134524a56b7509714b39d519f1-0a272-rqb54] [605_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_016_chr17_0004] Task initiated on local node
[2026-06-05T14:00:06.450632Z] [nf-c00279134524a56b7509714b39d519f1-0a272-rqb54] [605_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_017_chr18_0002' launched from sub-workflow 'CallGenome'
[2026-06-05T14:00:06.451241Z] [nf-c00279134524a56b7509714b39d519f1-0a272-rqb54] [605_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_017_chr18_0002' from sub-workflow 'CallGenome'
[2026-06-05T14:00:06.454362Z] [nf-c00279134524a56b7509714b39d519f1-0a272-rqb54] [605_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_017_chr18_0002] Task initiated on local node
[2026-06-05T14:00:06.515931Z] [nf-c00279134524a56b7509714b39d519f1-0a272-rqb54] [605_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_017_chr18_0002' launched from sub-workflow 'CallGenome'
[2026-06-05T14:00:06.516609Z] [nf-c00279134524a56b7509714b39d519f1-0a272-rqb54] [605_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_017_chr18_0000' from sub-workflow 'CallGenome'
[2026-06-05T14:00:06.520152Z] [nf-c00279134524a56b7509714b39d519f1-0a272-rqb54] [605_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_017_chr18_0000] Task initiated on local node
[2026-06-05T14:00:06.580857Z] [nf-c00279134524a56b7509714b39d519f1-0a272-rqb54] [605_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_017_chr18_0000' launched from sub-workflow 'CallGenome'
[2026-06-05T14:00:06.581612Z] [nf-c00279134524a56b7509714b39d519f1-0a272-rqb54] [605_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_017_chr18_0001' from sub-workflow 'CallGenome'
[2026-06-05T14:00:06.585502Z] [nf-c00279134524a56b7509714b39d519f1-0a272-rqb54] [605_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_017_chr18_0001] Task initiated on local node
[2026-06-05T14:00:06.614304Z] [nf-c00279134524a56b7509714b39d519f1-0a272-rqb54] [605_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_016_chr17_0006' launched from sub-workflow 'CallGenome'
[2026-06-05T14:00:06.614970Z] [nf-c00279134524a56b7509714b39d519f1-0a272-rqb54] [605_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_015_chr16_0001' from sub-workflow 'CallGenome'
[2026-06-05T14:00:06.618680Z] [nf-c00279134524a56b7509714b39d519f1-0a272-rqb54] [605_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_015_chr16_0001] Task initiated on local node
[2026-06-05T14:00:06.623264Z] [nf-c00279134524a56b7509714b39d519f1-0a272-rqb54] [605_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_017_chr18_0001' launched from sub-workflow 'CallGenome'
[2026-06-05T14:00:06.623941Z] [nf-c00279134524a56b7509714b39d519f1-0a272-rqb54] [605_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_015_chr16_0000' from sub-workflow 'CallGenome'
[2026-06-05T14:00:06.627514Z] [nf-c00279134524a56b7509714b39d519f1-0a272-rqb54] [605_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_015_chr16_0000] Task initiated on local node
[2026-06-05T14:00:06.656595Z] [nf-c00279134524a56b7509714b39d519f1-0a272-rqb54] [605_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_015_chr16_0001' launched from sub-workflow 'CallGenome'
[2026-06-05T14:00:06.657354Z] [nf-c00279134524a56b7509714b39d519f1-0a272-rqb54] [605_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_018_chr19_0004' from sub-workflow 'CallGenome'
[2026-06-05T14:00:06.660803Z] [nf-c00279134524a56b7509714b39d519f1-0a272-rqb54] [605_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_018_chr19_0004] Task initiated on local node
[2026-06-05T14:00:06.690299Z] [nf-c00279134524a56b7509714b39d519f1-0a272-rqb54] [605_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_015_chr16_0000' launched from sub-workflow 'CallGenome'
[2026-06-05T14:00:06.690987Z] [nf-c00279134524a56b7509714b39d519f1-0a272-rqb54] [605_1] [TaskManager] Launching command task: 'CallGenome+fixVcfHeader_chromId_015_chr16_0000' from sub-workflow 'CallGenome'
[2026-06-05T14:00:06.694268Z] [nf-c00279134524a56b7509714b39d519f1-0a272-rqb54] [605_1] [TaskRunner:CallGenome+fixVcfHeader_chromId_015_chr16_0000] Task initiated on local node
[2026-06-05T14:00:06.724597Z] [nf-c00279134524a56b7509714b39d519f1-0a272-rqb54] [605_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_018_chr19_0004' launched from sub-workflow 'CallGenome'
[2026-06-05T14:00:06.725257Z] [nf-c00279134524a56b7509714b39d519f1-0a272-rqb54] [605_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_018_chr19_0004' from sub-workflow 'CallGenome'
[2026-06-05T14:00:06.728705Z] [nf-c00279134524a56b7509714b39d519f1-0a272-rqb54] [605_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_018_chr19_0004] Task initiated on local node
[2026-06-05T14:00:06.757894Z] [nf-c00279134524a56b7509714b39d519f1-0a272-rqb54] [605_1] [TaskManager] Completed command task: 'CallGenome+fixVcfHeader_chromId_015_chr16_0000' launched from sub-workflow 'CallGenome'
[2026-06-05T14:00:06.758511Z] [nf-c00279134524a56b7509714b39d519f1-0a272-rqb54] [605_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_015_chr16_0000' from sub-workflow 'CallGenome'
[2026-06-05T14:00:06.762063Z] [nf-c00279134524a56b7509714b39d519f1-0a272-rqb54] [605_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_015_chr16_0000] Task initiated on local node
[2026-06-05T14:00:06.767005Z] [nf-c00279134524a56b7509714b39d519f1-0a272-rqb54] [605_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_018_chr19_0004' launched from sub-workflow 'CallGenome'
[2026-06-05T14:00:06.767603Z] [nf-c00279134524a56b7509714b39d519f1-0a272-rqb54] [605_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_016_chr17_0000' from sub-workflow 'CallGenome'
[2026-06-05T14:00:06.770964Z] [nf-c00279134524a56b7509714b39d519f1-0a272-rqb54] [605_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_016_chr17_0000] Task initiated on local node
[2026-06-05T14:00:06.832505Z] [nf-c00279134524a56b7509714b39d519f1-0a272-rqb54] [605_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_015_chr16_0000' launched from sub-workflow 'CallGenome'
[2026-06-05T14:00:06.832604Z] [nf-c00279134524a56b7509714b39d519f1-0a272-rqb54] [605_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_016_chr17_0002' launched from sub-workflow 'CallGenome'
[2026-06-05T14:00:06.833204Z] [nf-c00279134524a56b7509714b39d519f1-0a272-rqb54] [605_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_016_chr17_0002' from sub-workflow 'CallGenome'
[2026-06-05T14:00:06.833684Z] [nf-c00279134524a56b7509714b39d519f1-0a272-rqb54] [605_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_015_chr16_0003' from sub-workflow 'CallGenome'
[2026-06-05T14:00:06.837175Z] [nf-c00279134524a56b7509714b39d519f1-0a272-rqb54] [605_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_015_chr16_0003] Task initiated on local node
[2026-06-05T14:00:06.838396Z] [nf-c00279134524a56b7509714b39d519f1-0a272-rqb54] [605_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_016_chr17_0002] Task initiated on local node
[2026-06-05T14:00:06.897961Z] [nf-c00279134524a56b7509714b39d519f1-0a272-rqb54] [605_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_016_chr17_0002' launched from sub-workflow 'CallGenome'
[2026-06-05T14:00:06.898063Z] [nf-c00279134524a56b7509714b39d519f1-0a272-rqb54] [605_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_015_chr16_0003' launched from sub-workflow 'CallGenome'
[2026-06-05T14:00:06.898717Z] [nf-c00279134524a56b7509714b39d519f1-0a272-rqb54] [605_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_016_chr17_0006' from sub-workflow 'CallGenome'
[2026-06-05T14:00:06.899064Z] [nf-c00279134524a56b7509714b39d519f1-0a272-rqb54] [605_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_017_chr18_0004' from sub-workflow 'CallGenome'
[2026-06-05T14:00:06.902409Z] [nf-c00279134524a56b7509714b39d519f1-0a272-rqb54] [605_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_016_chr17_0006] Task initiated on local node
[2026-06-05T14:00:06.903593Z] [nf-c00279134524a56b7509714b39d519f1-0a272-rqb54] [605_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_017_chr18_0004] Task initiated on local node
[2026-06-05T14:00:06.963916Z] [nf-c00279134524a56b7509714b39d519f1-0a272-rqb54] [605_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_015_chr16_0005' launched from sub-workflow 'CallGenome'
[2026-06-05T14:00:06.964028Z] [nf-c00279134524a56b7509714b39d519f1-0a272-rqb54] [605_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_016_chr17_0006' launched from sub-workflow 'CallGenome'
[2026-06-05T14:00:06.964549Z] [nf-c00279134524a56b7509714b39d519f1-0a272-rqb54] [605_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_015_chr16_0005' from sub-workflow 'CallGenome'
[2026-06-05T14:00:06.964913Z] [nf-c00279134524a56b7509714b39d519f1-0a272-rqb54] [605_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_015_chr16_0004' from sub-workflow 'CallGenome'
[2026-06-05T14:00:06.968939Z] [nf-c00279134524a56b7509714b39d519f1-0a272-rqb54] [605_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_015_chr16_0005] Task initiated on local node
[2026-06-05T14:00:06.969302Z] [nf-c00279134524a56b7509714b39d519f1-0a272-rqb54] [605_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_015_chr16_0004] Task initiated on local node
[2026-06-05T14:00:07.030124Z] [nf-c00279134524a56b7509714b39d519f1-0a272-rqb54] [605_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_015_chr16_0005' launched from sub-workflow 'CallGenome'
[2026-06-05T14:00:07.030758Z] [nf-c00279134524a56b7509714b39d519f1-0a272-rqb54] [605_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_017_chr18_0006' from sub-workflow 'CallGenome'
[2026-06-05T14:00:07.034062Z] [nf-c00279134524a56b7509714b39d519f1-0a272-rqb54] [605_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_017_chr18_0006] Task initiated on local node
[2026-06-05T14:00:07.095339Z] [nf-c00279134524a56b7509714b39d519f1-0a272-rqb54] [605_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_017_chr18_0006' launched from sub-workflow 'CallGenome'
[2026-06-05T14:00:07.095899Z] [nf-c00279134524a56b7509714b39d519f1-0a272-rqb54] [605_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_018_chr19_0002' from sub-workflow 'CallGenome'
[2026-06-05T14:00:07.099899Z] [nf-c00279134524a56b7509714b39d519f1-0a272-rqb54] [605_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_018_chr19_0002] Task initiated on local node
[2026-06-05T14:00:07.210701Z] [nf-c00279134524a56b7509714b39d519f1-0a272-rqb54] [605_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_018_chr19_0002' launched from sub-workflow 'CallGenome'
[2026-06-05T14:00:07.211871Z] [nf-c00279134524a56b7509714b39d519f1-0a272-rqb54] [605_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_016_chr17_0001' from sub-workflow 'CallGenome'
[2026-06-05T14:00:07.215082Z] [nf-c00279134524a56b7509714b39d519f1-0a272-rqb54] [605_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_016_chr17_0001] Task initiated on local node
[2026-06-05T14:00:07.627403Z] [nf-c00279134524a56b7509714b39d519f1-0a272-rqb54] [605_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_017_chr18_0005' launched from sub-workflow 'CallGenome'
[2026-06-05T14:00:07.627932Z] [nf-c00279134524a56b7509714b39d519f1-0a272-rqb54] [605_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_015_chr16_0006' from sub-workflow 'CallGenome'
[2026-06-05T14:00:07.631313Z] [nf-c00279134524a56b7509714b39d519f1-0a272-rqb54] [605_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_015_chr16_0006] Task initiated on local node
[2026-06-05T14:00:07.692379Z] [nf-c00279134524a56b7509714b39d519f1-0a272-rqb54] [605_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_015_chr16_0006' launched from sub-workflow 'CallGenome'
[2026-06-05T14:00:07.693050Z] [nf-c00279134524a56b7509714b39d519f1-0a272-rqb54] [605_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_018_chr19_0000' from sub-workflow 'CallGenome'
[2026-06-05T14:00:07.697380Z] [nf-c00279134524a56b7509714b39d519f1-0a272-rqb54] [605_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_018_chr19_0000] Task initiated on local node
[2026-06-05T14:00:07.858319Z] [nf-c00279134524a56b7509714b39d519f1-0a272-rqb54] [605_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_016_chr17_0005' launched from sub-workflow 'CallGenome'
[2026-06-05T14:00:07.858981Z] [nf-c00279134524a56b7509714b39d519f1-0a272-rqb54] [605_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_017_chr18_0005' from sub-workflow 'CallGenome'
[2026-06-05T14:00:07.862903Z] [nf-c00279134524a56b7509714b39d519f1-0a272-rqb54] [605_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_017_chr18_0005] Task initiated on local node
[2026-06-05T14:00:07.923946Z] [nf-c00279134524a56b7509714b39d519f1-0a272-rqb54] [605_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_017_chr18_0005' launched from sub-workflow 'CallGenome'
[2026-06-05T14:00:07.924530Z] [nf-c00279134524a56b7509714b39d519f1-0a272-rqb54] [605_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_018_chr19_0002' from sub-workflow 'CallGenome'
[2026-06-05T14:00:07.928085Z] [nf-c00279134524a56b7509714b39d519f1-0a272-rqb54] [605_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_018_chr19_0002] Task initiated on local node
[2026-06-05T14:00:07.988956Z] [nf-c00279134524a56b7509714b39d519f1-0a272-rqb54] [605_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_018_chr19_0002' launched from sub-workflow 'CallGenome'
[2026-06-05T14:00:07.989504Z] [nf-c00279134524a56b7509714b39d519f1-0a272-rqb54] [605_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_016_chr17_0005' from sub-workflow 'CallGenome'
[2026-06-05T14:00:07.994285Z] [nf-c00279134524a56b7509714b39d519f1-0a272-rqb54] [605_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_016_chr17_0005] Task initiated on local node
[2026-06-05T14:00:08.054506Z] [nf-c00279134524a56b7509714b39d519f1-0a272-rqb54] [605_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_016_chr17_0005' launched from sub-workflow 'CallGenome'
[2026-06-05T14:00:08.269450Z] [nf-c00279134524a56b7509714b39d519f1-0a272-rqb54] [605_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_015_chr16_0004' launched from sub-workflow 'CallGenome'
[2026-06-05T14:00:08.269950Z] [nf-c00279134524a56b7509714b39d519f1-0a272-rqb54] [605_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_015_chr16_0004' from sub-workflow 'CallGenome'
[2026-06-05T14:00:08.274104Z] [nf-c00279134524a56b7509714b39d519f1-0a272-rqb54] [605_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_015_chr16_0004] Task initiated on local node
[2026-06-05T14:00:08.335009Z] [nf-c00279134524a56b7509714b39d519f1-0a272-rqb54] [605_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_015_chr16_0004' launched from sub-workflow 'CallGenome'
[2026-06-05T14:00:08.499383Z] [nf-c00279134524a56b7509714b39d519f1-0a272-rqb54] [605_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_016_chr17_0004' launched from sub-workflow 'CallGenome'
[2026-06-05T14:00:08.499815Z] [nf-c00279134524a56b7509714b39d519f1-0a272-rqb54] [605_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_016_chr17_0004' from sub-workflow 'CallGenome'
[2026-06-05T14:00:08.503220Z] [nf-c00279134524a56b7509714b39d519f1-0a272-rqb54] [605_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_016_chr17_0004] Task initiated on local node
[2026-06-05T14:00:08.564410Z] [nf-c00279134524a56b7509714b39d519f1-0a272-rqb54] [605_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_016_chr17_0004' launched from sub-workflow 'CallGenome'
[2026-06-05T14:00:08.779034Z] [nf-c00279134524a56b7509714b39d519f1-0a272-rqb54] [605_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_017_chr18_0004' launched from sub-workflow 'CallGenome'
[2026-06-05T14:00:08.779576Z] [nf-c00279134524a56b7509714b39d519f1-0a272-rqb54] [605_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_017_chr18_0004' from sub-workflow 'CallGenome'
[2026-06-05T14:00:08.783539Z] [nf-c00279134524a56b7509714b39d519f1-0a272-rqb54] [605_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_017_chr18_0004] Task initiated on local node
[2026-06-05T14:00:08.844463Z] [nf-c00279134524a56b7509714b39d519f1-0a272-rqb54] [605_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_017_chr18_0004' launched from sub-workflow 'CallGenome'
[2026-06-05T14:00:09.610921Z] [nf-c00279134524a56b7509714b39d519f1-0a272-rqb54] [605_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_016_chr17_0001' launched from sub-workflow 'CallGenome'
[2026-06-05T14:00:09.611368Z] [nf-c00279134524a56b7509714b39d519f1-0a272-rqb54] [605_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_016_chr17_0001' from sub-workflow 'CallGenome'
[2026-06-05T14:00:09.614684Z] [nf-c00279134524a56b7509714b39d519f1-0a272-rqb54] [605_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_016_chr17_0001] Task initiated on local node
[2026-06-05T14:00:09.676222Z] [nf-c00279134524a56b7509714b39d519f1-0a272-rqb54] [605_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_016_chr17_0001' launched from sub-workflow 'CallGenome'
[2026-06-05T14:00:10.291919Z] [nf-c00279134524a56b7509714b39d519f1-0a272-rqb54] [605_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_016_chr17_0003' launched from sub-workflow 'CallGenome'
[2026-06-05T14:00:10.292410Z] [nf-c00279134524a56b7509714b39d519f1-0a272-rqb54] [605_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_016_chr17_0003' from sub-workflow 'CallGenome'
[2026-06-05T14:00:10.295704Z] [nf-c00279134524a56b7509714b39d519f1-0a272-rqb54] [605_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_016_chr17_0003] Task initiated on local node
[2026-06-05T14:00:10.356723Z] [nf-c00279134524a56b7509714b39d519f1-0a272-rqb54] [605_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_016_chr17_0003' launched from sub-workflow 'CallGenome'
[2026-06-05T14:00:10.671529Z] [nf-c00279134524a56b7509714b39d519f1-0a272-rqb54] [605_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_016_chr17_0000' launched from sub-workflow 'CallGenome'
[2026-06-05T14:00:10.671995Z] [nf-c00279134524a56b7509714b39d519f1-0a272-rqb54] [605_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_016_chr17_0000' from sub-workflow 'CallGenome'
[2026-06-05T14:00:10.674924Z] [nf-c00279134524a56b7509714b39d519f1-0a272-rqb54] [605_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_016_chr17_0000] Task initiated on local node
[2026-06-05T14:00:10.736702Z] [nf-c00279134524a56b7509714b39d519f1-0a272-rqb54] [605_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_016_chr17_0000' launched from sub-workflow 'CallGenome'
[2026-06-05T14:00:12.405180Z] [nf-c00279134524a56b7509714b39d519f1-0a272-rqb54] [605_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_018_chr19_0000' launched from sub-workflow 'CallGenome'
[2026-06-05T14:00:12.405721Z] [nf-c00279134524a56b7509714b39d519f1-0a272-rqb54] [605_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_018_chr19_0000' from sub-workflow 'CallGenome'
[2026-06-05T14:00:12.408758Z] [nf-c00279134524a56b7509714b39d519f1-0a272-rqb54] [605_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_018_chr19_0000] Task initiated on local node
[2026-06-05T14:00:12.470089Z] [nf-c00279134524a56b7509714b39d519f1-0a272-rqb54] [605_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_018_chr19_0000' launched from sub-workflow 'CallGenome'
[2026-06-05T14:00:12.470390Z] [nf-c00279134524a56b7509714b39d519f1-0a272-rqb54] [605_1] [TaskManager] Completed command task: 'CallGenome+completedAllGenomeSegments' launched from sub-workflow 'CallGenome'
[2026-06-05T14:00:12.470566Z] [nf-c00279134524a56b7509714b39d519f1-0a272-rqb54] [605_1] [TaskManager] Launching command task: 'CallGenome+SNV_concat_vcf' from sub-workflow 'CallGenome'
[2026-06-05T14:00:12.470901Z] [nf-c00279134524a56b7509714b39d519f1-0a272-rqb54] [605_1] [TaskManager] Launching command task: 'CallGenome+mergeRunStats' from sub-workflow 'CallGenome'
[2026-06-05T14:00:12.471810Z] [nf-c00279134524a56b7509714b39d519f1-0a272-rqb54] [605_1] [TaskManager] Launching command task: 'CallGenome+Indel_concat_vcf' from sub-workflow 'CallGenome'
[2026-06-05T14:00:12.476989Z] [nf-c00279134524a56b7509714b39d519f1-0a272-rqb54] [605_1] [TaskRunner:CallGenome+SNV_concat_vcf] Task initiated on local node
[2026-06-05T14:00:12.479040Z] [nf-c00279134524a56b7509714b39d519f1-0a272-rqb54] [605_1] [TaskRunner:CallGenome+mergeRunStats] Task initiated on local node
[2026-06-05T14:00:12.512651Z] [nf-c00279134524a56b7509714b39d519f1-0a272-rqb54] [605_1] [TaskRunner:CallGenome+Indel_concat_vcf] Task initiated on local node
[2026-06-05T14:00:12.537769Z] [nf-c00279134524a56b7509714b39d519f1-0a272-rqb54] [605_1] [TaskManager] Completed command task: 'CallGenome+Indel_concat_vcf' launched from sub-workflow 'CallGenome'
[2026-06-05T14:00:12.537915Z] [nf-c00279134524a56b7509714b39d519f1-0a272-rqb54] [605_1] [TaskManager] Completed command task: 'CallGenome+mergeRunStats' launched from sub-workflow 'CallGenome'
[2026-06-05T14:00:12.537975Z] [nf-c00279134524a56b7509714b39d519f1-0a272-rqb54] [605_1] [TaskManager] Completed command task: 'CallGenome+SNV_concat_vcf' launched from sub-workflow 'CallGenome'
[2026-06-05T14:00:12.538435Z] [nf-c00279134524a56b7509714b39d519f1-0a272-rqb54] [605_1] [TaskManager] Launching command task: 'CallGenome+SNV_index_vcf' from sub-workflow 'CallGenome'
[2026-06-05T14:00:12.538947Z] [nf-c00279134524a56b7509714b39d519f1-0a272-rqb54] [605_1] [TaskManager] Launching command task: 'CallGenome+Indel_index_vcf' from sub-workflow 'CallGenome'
[2026-06-05T14:00:12.542589Z] [nf-c00279134524a56b7509714b39d519f1-0a272-rqb54] [605_1] [TaskRunner:CallGenome+SNV_index_vcf] Task initiated on local node
[2026-06-05T14:00:12.544211Z] [nf-c00279134524a56b7509714b39d519f1-0a272-rqb54] [605_1] [TaskRunner:CallGenome+Indel_index_vcf] Task initiated on local node
[2026-06-05T14:00:12.603986Z] [nf-c00279134524a56b7509714b39d519f1-0a272-rqb54] [605_1] [TaskManager] Completed command task: 'CallGenome+SNV_index_vcf' launched from sub-workflow 'CallGenome'
[2026-06-05T14:00:12.604218Z] [nf-c00279134524a56b7509714b39d519f1-0a272-rqb54] [605_1] [TaskManager] Completed command task: 'CallGenome+Indel_index_vcf' launched from sub-workflow 'CallGenome'
[2026-06-05T14:00:12.604532Z] [nf-c00279134524a56b7509714b39d519f1-0a272-rqb54] [605_1] [TaskManager] Launching command task: 'CallGenome+removeTmpDir' from sub-workflow 'CallGenome'
[2026-06-05T14:00:12.607184Z] [nf-c00279134524a56b7509714b39d519f1-0a272-rqb54] [605_1] [TaskRunner:CallGenome+removeTmpDir] Task initiated on local node
[2026-06-05T14:00:12.636653Z] [nf-c00279134524a56b7509714b39d519f1-0a272-rqb54] [605_1] [TaskManager] Completed command task: 'CallGenome+removeTmpDir' launched from sub-workflow 'CallGenome'
[2026-06-05T14:00:14.405888Z] [nf-c00279134524a56b7509714b39d519f1-0a272-rqb54] [605_1] [TaskManager] Completed sub-workflow task: 'CallGenome' launched from master workflow
[2026-06-05T14:00:22.728897Z] [nf-c00279134524a56b7509714b39d519f1-0a272-rqb54] [605_1] [WorkflowRunner] Strelka somatic workflow successfully completed.
[2026-06-05T14:00:22.728897Z] [nf-c00279134524a56b7509714b39d519f1-0a272-rqb54] [605_1] [WorkflowRunner] 
[2026-06-05T14:00:22.728897Z] [nf-c00279134524a56b7509714b39d519f1-0a272-rqb54] [605_1] [WorkflowRunner] 	workflow version: 2.9.10
[2026-06-05T14:00:22.728965Z] [nf-c00279134524a56b7509714b39d519f1-0a272-rqb54] [605_1] [WorkflowRunner] 
[2026-06-05T14:00:22.728972Z] [nf-c00279134524a56b7509714b39d519f1-0a272-rqb54] [605_1] [WorkflowRunner] Workflow successfully completed all tasks
[2026-06-05T14:00:22.728978Z] [nf-c00279134524a56b7509714b39d519f1-0a272-rqb54] [605_1] [WorkflowRunner] Elapsed time for full workflow: 18 sec