File Info

Filename
.command.err
Full Path
s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/38/4942d0fdb5b70fe96a466d754d3a48/.command.err
Size
62.0 KB
Task
DAQ:CONTROL_VARIANT_CALLING:CONTROL_SOMATIC_VC:BAM_VARIANT_CALLING_SOMATIC_STRELKA:STRELKA_SOMATIC (negative_somatic_control_2;chr19_15162349-15162662.bed)
Attempt

Content

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[W::hts_idx_load2] The index file is older than the data file: /tmp/nxf.XXXX5GEcXv/chr19_15162349-15162662.bed.gz.tbi
[W::hts_idx_load2] The index file is older than the data file: /tmp/nxf.XXXX5GEcXv/chr19_15162349-15162662.bed.gz.tbi
[W::hts_idx_load2] The index file is older than the data file: /tmp/nxf.XXXX5GEcXv/chr19_15162349-15162662.bed.gz.tbi
[2026-06-05T14:00:00.551608Z] [nf-384942d0fdb5b70fe96a466d754d3a48-096d6-5ndvs] [619_1] [WorkflowRunner] Initiating pyFlow run
[2026-06-05T14:00:00.552532Z] [nf-384942d0fdb5b70fe96a466d754d3a48-096d6-5ndvs] [619_1] [WorkflowRunner] pyFlowClientWorkflowClass: StrelkaSomaticWorkflow
[2026-06-05T14:00:00.552545Z] [nf-384942d0fdb5b70fe96a466d754d3a48-096d6-5ndvs] [619_1] [WorkflowRunner] pyFlowVersion: 1.1.20
[2026-06-05T14:00:00.552550Z] [nf-384942d0fdb5b70fe96a466d754d3a48-096d6-5ndvs] [619_1] [WorkflowRunner] pythonVersion: 2.7.15.final.0
[2026-06-05T14:00:00.552555Z] [nf-384942d0fdb5b70fe96a466d754d3a48-096d6-5ndvs] [619_1] [WorkflowRunner] WorkingDir: '/tmp/nxf.XXXX5GEcXv'
[2026-06-05T14:00:00.552559Z] [nf-384942d0fdb5b70fe96a466d754d3a48-096d6-5ndvs] [619_1] [WorkflowRunner] ProcessCmdLine: '/var/tmp/strelka/runWorkflow.py -m local -j 8'
[2026-06-05T14:00:00.552564Z] [nf-384942d0fdb5b70fe96a466d754d3a48-096d6-5ndvs] [619_1] [WorkflowRunner] [RunParameters] mode: local
[2026-06-05T14:00:00.552575Z] [nf-384942d0fdb5b70fe96a466d754d3a48-096d6-5ndvs] [619_1] [WorkflowRunner] [RunParameters] nCores: 8
[2026-06-05T14:00:00.552581Z] [nf-384942d0fdb5b70fe96a466d754d3a48-096d6-5ndvs] [619_1] [WorkflowRunner] [RunParameters] memMb: 3047507
[2026-06-05T14:00:00.552585Z] [nf-384942d0fdb5b70fe96a466d754d3a48-096d6-5ndvs] [619_1] [WorkflowRunner] [RunParameters] dataDir: /var/tmp/strelka/workspace/pyflow.data
[2026-06-05T14:00:00.552591Z] [nf-384942d0fdb5b70fe96a466d754d3a48-096d6-5ndvs] [619_1] [WorkflowRunner] [RunParameters] isDryRun: False
[2026-06-05T14:00:00.552595Z] [nf-384942d0fdb5b70fe96a466d754d3a48-096d6-5ndvs] [619_1] [WorkflowRunner] [RunParameters] isContinue: False
[2026-06-05T14:00:00.552623Z] [nf-384942d0fdb5b70fe96a466d754d3a48-096d6-5ndvs] [619_1] [WorkflowRunner] [RunParameters] isForceContinue: True
[2026-06-05T14:00:00.552631Z] [nf-384942d0fdb5b70fe96a466d754d3a48-096d6-5ndvs] [619_1] [WorkflowRunner] [RunParameters] mailTo: ''
[2026-06-05T14:00:00.553297Z] [nf-384942d0fdb5b70fe96a466d754d3a48-096d6-5ndvs] [619_1] [TaskRunner:masterWorkflow] Starting task specification for master workflow
[2026-06-05T14:00:00.553440Z] [nf-384942d0fdb5b70fe96a466d754d3a48-096d6-5ndvs] [619_1] [StrelkaSomaticWorkflow] Initiating Strelka somatic workflow version: 2.9.10
[2026-06-05T14:00:00.559184Z] [nf-384942d0fdb5b70fe96a466d754d3a48-096d6-5ndvs] [619_1] [WorkflowRunner] Adding sub-workflow task 'CallGenome' to master workflow
[2026-06-05T14:00:00.560113Z] [nf-384942d0fdb5b70fe96a466d754d3a48-096d6-5ndvs] [619_1] [TaskManager] Launching sub-workflow task: 'CallGenome' from master workflow
[2026-06-05T14:00:00.560329Z] [nf-384942d0fdb5b70fe96a466d754d3a48-096d6-5ndvs] [619_1] [TaskRunner:masterWorkflow] Finished task specification for master workflow
[2026-06-05T14:00:00.560674Z] [nf-384942d0fdb5b70fe96a466d754d3a48-096d6-5ndvs] [619_1] [TaskRunner:CallGenome] Starting task specification for sub-workflow
[2026-06-05T14:00:00.560978Z] [nf-384942d0fdb5b70fe96a466d754d3a48-096d6-5ndvs] [619_1] [WorkflowRunner] Adding command task 'CallGenome+makeTmpDir' to sub-workflow 'CallGenome'
[2026-06-05T14:00:00.561321Z] [nf-384942d0fdb5b70fe96a466d754d3a48-096d6-5ndvs] [619_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0000' to sub-workflow 'CallGenome'
[2026-06-05T14:00:00.561409Z] [nf-384942d0fdb5b70fe96a466d754d3a48-096d6-5ndvs] [619_1] [WorkflowRunner] Adding command task 'CallGenome+fixVcfHeader_chromId_001_chr2_0000' to sub-workflow 'CallGenome'
[2026-06-05T14:00:00.561480Z] [nf-384942d0fdb5b70fe96a466d754d3a48-096d6-5ndvs] [619_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0000' to sub-workflow 'CallGenome'
[2026-06-05T14:00:00.561596Z] [nf-384942d0fdb5b70fe96a466d754d3a48-096d6-5ndvs] [619_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0001' to sub-workflow 'CallGenome'
[2026-06-05T14:00:00.561663Z] [nf-384942d0fdb5b70fe96a466d754d3a48-096d6-5ndvs] [619_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0001' to sub-workflow 'CallGenome'
[2026-06-05T14:00:00.561782Z] [nf-384942d0fdb5b70fe96a466d754d3a48-096d6-5ndvs] [619_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0002' to sub-workflow 'CallGenome'
[2026-06-05T14:00:00.561844Z] [nf-384942d0fdb5b70fe96a466d754d3a48-096d6-5ndvs] [619_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0002' to sub-workflow 'CallGenome'
[2026-06-05T14:00:00.562342Z] [nf-384942d0fdb5b70fe96a466d754d3a48-096d6-5ndvs] [619_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0003' to sub-workflow 'CallGenome'
[2026-06-05T14:00:00.562765Z] [nf-384942d0fdb5b70fe96a466d754d3a48-096d6-5ndvs] [619_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0003' to sub-workflow 'CallGenome'
[2026-06-05T14:00:00.562999Z] [nf-384942d0fdb5b70fe96a466d754d3a48-096d6-5ndvs] [619_1] [TaskManager] Launching command task: 'CallGenome+makeTmpDir' from sub-workflow 'CallGenome'
[2026-06-05T14:00:00.563151Z] [nf-384942d0fdb5b70fe96a466d754d3a48-096d6-5ndvs] [619_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0004' to sub-workflow 'CallGenome'
[2026-06-05T14:00:00.563290Z] [nf-384942d0fdb5b70fe96a466d754d3a48-096d6-5ndvs] [619_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0004' to sub-workflow 'CallGenome'
[2026-06-05T14:00:00.563922Z] [nf-384942d0fdb5b70fe96a466d754d3a48-096d6-5ndvs] [619_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0005' to sub-workflow 'CallGenome'
[2026-06-05T14:00:00.565920Z] [nf-384942d0fdb5b70fe96a466d754d3a48-096d6-5ndvs] [619_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0005' to sub-workflow 'CallGenome'
[2026-06-05T14:00:00.566260Z] [nf-384942d0fdb5b70fe96a466d754d3a48-096d6-5ndvs] [619_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0006' to sub-workflow 'CallGenome'
[2026-06-05T14:00:00.566333Z] [nf-384942d0fdb5b70fe96a466d754d3a48-096d6-5ndvs] [619_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0006' to sub-workflow 'CallGenome'
[2026-06-05T14:00:00.566449Z] [nf-384942d0fdb5b70fe96a466d754d3a48-096d6-5ndvs] [619_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0007' to sub-workflow 'CallGenome'
[2026-06-05T14:00:00.566773Z] [nf-384942d0fdb5b70fe96a466d754d3a48-096d6-5ndvs] [619_1] [TaskRunner:CallGenome+makeTmpDir] Task initiated on local node
[2026-06-05T14:00:00.567118Z] [nf-384942d0fdb5b70fe96a466d754d3a48-096d6-5ndvs] [619_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0007' to sub-workflow 'CallGenome'
[2026-06-05T14:00:00.567901Z] [nf-384942d0fdb5b70fe96a466d754d3a48-096d6-5ndvs] [619_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0008' to sub-workflow 'CallGenome'
[2026-06-05T14:00:00.568095Z] [nf-384942d0fdb5b70fe96a466d754d3a48-096d6-5ndvs] [619_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0008' to sub-workflow 'CallGenome'
[2026-06-05T14:00:00.568214Z] [nf-384942d0fdb5b70fe96a466d754d3a48-096d6-5ndvs] [619_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0009' to sub-workflow 'CallGenome'
[2026-06-05T14:00:00.568286Z] [nf-384942d0fdb5b70fe96a466d754d3a48-096d6-5ndvs] [619_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0009' to sub-workflow 'CallGenome'
[2026-06-05T14:00:00.568396Z] [nf-384942d0fdb5b70fe96a466d754d3a48-096d6-5ndvs] [619_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0010' to sub-workflow 'CallGenome'
[2026-06-05T14:00:00.568459Z] [nf-384942d0fdb5b70fe96a466d754d3a48-096d6-5ndvs] [619_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0010' to sub-workflow 'CallGenome'
[2026-06-05T14:00:00.568573Z] [nf-384942d0fdb5b70fe96a466d754d3a48-096d6-5ndvs] [619_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0011' to sub-workflow 'CallGenome'
[2026-06-05T14:00:00.568637Z] [nf-384942d0fdb5b70fe96a466d754d3a48-096d6-5ndvs] [619_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0011' to sub-workflow 'CallGenome'
[2026-06-05T14:00:00.568751Z] [nf-384942d0fdb5b70fe96a466d754d3a48-096d6-5ndvs] [619_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0012' to sub-workflow 'CallGenome'
[2026-06-05T14:00:00.568818Z] [nf-384942d0fdb5b70fe96a466d754d3a48-096d6-5ndvs] [619_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0012' to sub-workflow 'CallGenome'
[2026-06-05T14:00:00.568925Z] [nf-384942d0fdb5b70fe96a466d754d3a48-096d6-5ndvs] [619_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0013' to sub-workflow 'CallGenome'
[2026-06-05T14:00:00.568992Z] [nf-384942d0fdb5b70fe96a466d754d3a48-096d6-5ndvs] [619_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0013' to sub-workflow 'CallGenome'
[2026-06-05T14:00:00.569421Z] [nf-384942d0fdb5b70fe96a466d754d3a48-096d6-5ndvs] [619_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0014' to sub-workflow 'CallGenome'
[2026-06-05T14:00:00.569755Z] [nf-384942d0fdb5b70fe96a466d754d3a48-096d6-5ndvs] [619_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0014' to sub-workflow 'CallGenome'
[2026-06-05T14:00:00.569881Z] [nf-384942d0fdb5b70fe96a466d754d3a48-096d6-5ndvs] [619_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0015' to sub-workflow 'CallGenome'
[2026-06-05T14:00:00.569946Z] [nf-384942d0fdb5b70fe96a466d754d3a48-096d6-5ndvs] [619_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0015' to sub-workflow 'CallGenome'
[2026-06-05T14:00:00.570056Z] [nf-384942d0fdb5b70fe96a466d754d3a48-096d6-5ndvs] [619_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0016' to sub-workflow 'CallGenome'
[2026-06-05T14:00:00.570121Z] [nf-384942d0fdb5b70fe96a466d754d3a48-096d6-5ndvs] [619_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0016' to sub-workflow 'CallGenome'
[2026-06-05T14:00:00.570234Z] [nf-384942d0fdb5b70fe96a466d754d3a48-096d6-5ndvs] [619_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0017' to sub-workflow 'CallGenome'
[2026-06-05T14:00:00.570298Z] [nf-384942d0fdb5b70fe96a466d754d3a48-096d6-5ndvs] [619_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0017' to sub-workflow 'CallGenome'
[2026-06-05T14:00:00.570407Z] [nf-384942d0fdb5b70fe96a466d754d3a48-096d6-5ndvs] [619_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0018' to sub-workflow 'CallGenome'
[2026-06-05T14:00:00.570471Z] [nf-384942d0fdb5b70fe96a466d754d3a48-096d6-5ndvs] [619_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0018' to sub-workflow 'CallGenome'
[2026-06-05T14:00:00.570579Z] [nf-384942d0fdb5b70fe96a466d754d3a48-096d6-5ndvs] [619_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0019' to sub-workflow 'CallGenome'
[2026-06-05T14:00:00.570647Z] [nf-384942d0fdb5b70fe96a466d754d3a48-096d6-5ndvs] [619_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0019' to sub-workflow 'CallGenome'
[2026-06-05T14:00:00.571768Z] [nf-384942d0fdb5b70fe96a466d754d3a48-096d6-5ndvs] [619_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0020' to sub-workflow 'CallGenome'
[2026-06-05T14:00:00.572132Z] [nf-384942d0fdb5b70fe96a466d754d3a48-096d6-5ndvs] [619_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0020' to sub-workflow 'CallGenome'
[2026-06-05T14:00:00.572254Z] [nf-384942d0fdb5b70fe96a466d754d3a48-096d6-5ndvs] [619_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_018_chr19_0000' to sub-workflow 'CallGenome'
[2026-06-05T14:00:00.572375Z] [nf-384942d0fdb5b70fe96a466d754d3a48-096d6-5ndvs] [619_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_018_chr19_0000' to sub-workflow 'CallGenome'
[2026-06-05T14:00:00.572492Z] [nf-384942d0fdb5b70fe96a466d754d3a48-096d6-5ndvs] [619_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_018_chr19_0001' to sub-workflow 'CallGenome'
[2026-06-05T14:00:00.572557Z] [nf-384942d0fdb5b70fe96a466d754d3a48-096d6-5ndvs] [619_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_018_chr19_0001' to sub-workflow 'CallGenome'
[2026-06-05T14:00:00.572707Z] [nf-384942d0fdb5b70fe96a466d754d3a48-096d6-5ndvs] [619_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_018_chr19_0002' to sub-workflow 'CallGenome'
[2026-06-05T14:00:00.572782Z] [nf-384942d0fdb5b70fe96a466d754d3a48-096d6-5ndvs] [619_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_018_chr19_0002' to sub-workflow 'CallGenome'
[2026-06-05T14:00:00.572906Z] [nf-384942d0fdb5b70fe96a466d754d3a48-096d6-5ndvs] [619_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_018_chr19_0003' to sub-workflow 'CallGenome'
[2026-06-05T14:00:00.572970Z] [nf-384942d0fdb5b70fe96a466d754d3a48-096d6-5ndvs] [619_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_018_chr19_0003' to sub-workflow 'CallGenome'
[2026-06-05T14:00:00.573088Z] [nf-384942d0fdb5b70fe96a466d754d3a48-096d6-5ndvs] [619_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_018_chr19_0004' to sub-workflow 'CallGenome'
[2026-06-05T14:00:00.573219Z] [nf-384942d0fdb5b70fe96a466d754d3a48-096d6-5ndvs] [619_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_018_chr19_0004' to sub-workflow 'CallGenome'
[2026-06-05T14:00:00.573579Z] [nf-384942d0fdb5b70fe96a466d754d3a48-096d6-5ndvs] [619_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_019_chr20_0000' to sub-workflow 'CallGenome'
[2026-06-05T14:00:00.574016Z] [nf-384942d0fdb5b70fe96a466d754d3a48-096d6-5ndvs] [619_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_019_chr20_0000' to sub-workflow 'CallGenome'
[2026-06-05T14:00:00.574131Z] [nf-384942d0fdb5b70fe96a466d754d3a48-096d6-5ndvs] [619_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_019_chr20_0001' to sub-workflow 'CallGenome'
[2026-06-05T14:00:00.574198Z] [nf-384942d0fdb5b70fe96a466d754d3a48-096d6-5ndvs] [619_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_019_chr20_0001' to sub-workflow 'CallGenome'
[2026-06-05T14:00:00.574309Z] [nf-384942d0fdb5b70fe96a466d754d3a48-096d6-5ndvs] [619_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_019_chr20_0002' to sub-workflow 'CallGenome'
[2026-06-05T14:00:00.574371Z] [nf-384942d0fdb5b70fe96a466d754d3a48-096d6-5ndvs] [619_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_019_chr20_0002' to sub-workflow 'CallGenome'
[2026-06-05T14:00:00.574483Z] [nf-384942d0fdb5b70fe96a466d754d3a48-096d6-5ndvs] [619_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_019_chr20_0003' to sub-workflow 'CallGenome'
[2026-06-05T14:00:00.574547Z] [nf-384942d0fdb5b70fe96a466d754d3a48-096d6-5ndvs] [619_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_019_chr20_0003' to sub-workflow 'CallGenome'
[2026-06-05T14:00:00.574655Z] [nf-384942d0fdb5b70fe96a466d754d3a48-096d6-5ndvs] [619_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_019_chr20_0004' to sub-workflow 'CallGenome'
[2026-06-05T14:00:00.574723Z] [nf-384942d0fdb5b70fe96a466d754d3a48-096d6-5ndvs] [619_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_019_chr20_0004' to sub-workflow 'CallGenome'
[2026-06-05T14:00:00.591555Z] [nf-384942d0fdb5b70fe96a466d754d3a48-096d6-5ndvs] [619_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_019_chr20_0005' to sub-workflow 'CallGenome'
[2026-06-05T14:00:00.591899Z] [nf-384942d0fdb5b70fe96a466d754d3a48-096d6-5ndvs] [619_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_019_chr20_0005' to sub-workflow 'CallGenome'
[2026-06-05T14:00:00.591980Z] [nf-384942d0fdb5b70fe96a466d754d3a48-096d6-5ndvs] [619_1] [WorkflowRunner] Adding command task 'CallGenome+completedAllGenomeSegments' to sub-workflow 'CallGenome'
[2026-06-05T14:00:00.592155Z] [nf-384942d0fdb5b70fe96a466d754d3a48-096d6-5ndvs] [619_1] [WorkflowRunner] Adding command task 'CallGenome+SNV_concat_vcf' to sub-workflow 'CallGenome'
[2026-06-05T14:00:00.592231Z] [nf-384942d0fdb5b70fe96a466d754d3a48-096d6-5ndvs] [619_1] [WorkflowRunner] Adding command task 'CallGenome+SNV_index_vcf' to sub-workflow 'CallGenome'
[2026-06-05T14:00:00.592318Z] [nf-384942d0fdb5b70fe96a466d754d3a48-096d6-5ndvs] [619_1] [WorkflowRunner] Adding command task 'CallGenome+Indel_concat_vcf' to sub-workflow 'CallGenome'
[2026-06-05T14:00:00.592387Z] [nf-384942d0fdb5b70fe96a466d754d3a48-096d6-5ndvs] [619_1] [WorkflowRunner] Adding command task 'CallGenome+Indel_index_vcf' to sub-workflow 'CallGenome'
[2026-06-05T14:00:00.592506Z] [nf-384942d0fdb5b70fe96a466d754d3a48-096d6-5ndvs] [619_1] [WorkflowRunner] Adding command task 'CallGenome+mergeRunStats' to sub-workflow 'CallGenome'
[2026-06-05T14:00:00.593591Z] [nf-384942d0fdb5b70fe96a466d754d3a48-096d6-5ndvs] [619_1] [WorkflowRunner] Adding command task 'CallGenome+removeTmpDir' to sub-workflow 'CallGenome'
[2026-06-05T14:00:00.593926Z] [nf-384942d0fdb5b70fe96a466d754d3a48-096d6-5ndvs] [619_1] [TaskRunner:CallGenome] Finished task specification for sub-workflow
[2026-06-05T14:00:00.597857Z] [nf-384942d0fdb5b70fe96a466d754d3a48-096d6-5ndvs] [619_1] [TaskManager] Completed command task: 'CallGenome+makeTmpDir' launched from sub-workflow 'CallGenome'
[2026-06-05T14:00:00.598446Z] [nf-384942d0fdb5b70fe96a466d754d3a48-096d6-5ndvs] [619_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_018_chr19_0003' from sub-workflow 'CallGenome'
[2026-06-05T14:00:00.598792Z] [nf-384942d0fdb5b70fe96a466d754d3a48-096d6-5ndvs] [619_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0019' from sub-workflow 'CallGenome'
[2026-06-05T14:00:00.599150Z] [nf-384942d0fdb5b70fe96a466d754d3a48-096d6-5ndvs] [619_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0005' from sub-workflow 'CallGenome'
[2026-06-05T14:00:00.599891Z] [nf-384942d0fdb5b70fe96a466d754d3a48-096d6-5ndvs] [619_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_019_chr20_0005' from sub-workflow 'CallGenome'
[2026-06-05T14:00:00.601127Z] [nf-384942d0fdb5b70fe96a466d754d3a48-096d6-5ndvs] [619_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0003' from sub-workflow 'CallGenome'
[2026-06-05T14:00:00.602152Z] [nf-384942d0fdb5b70fe96a466d754d3a48-096d6-5ndvs] [619_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0006' from sub-workflow 'CallGenome'
[2026-06-05T14:00:00.603133Z] [nf-384942d0fdb5b70fe96a466d754d3a48-096d6-5ndvs] [619_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0011' from sub-workflow 'CallGenome'
[2026-06-05T14:00:00.604275Z] [nf-384942d0fdb5b70fe96a466d754d3a48-096d6-5ndvs] [619_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0001' from sub-workflow 'CallGenome'
[2026-06-05T14:00:00.609460Z] [nf-384942d0fdb5b70fe96a466d754d3a48-096d6-5ndvs] [619_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0019] Task initiated on local node
[2026-06-05T14:00:00.612154Z] [nf-384942d0fdb5b70fe96a466d754d3a48-096d6-5ndvs] [619_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_018_chr19_0003] Task initiated on local node
[2026-06-05T14:00:00.616032Z] [nf-384942d0fdb5b70fe96a466d754d3a48-096d6-5ndvs] [619_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_019_chr20_0005] Task initiated on local node
[2026-06-05T14:00:00.618624Z] [nf-384942d0fdb5b70fe96a466d754d3a48-096d6-5ndvs] [619_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0005] Task initiated on local node
[2026-06-05T14:00:00.620050Z] [nf-384942d0fdb5b70fe96a466d754d3a48-096d6-5ndvs] [619_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0003] Task initiated on local node
[2026-06-05T14:00:00.623938Z] [nf-384942d0fdb5b70fe96a466d754d3a48-096d6-5ndvs] [619_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0006] Task initiated on local node
[2026-06-05T14:00:00.625651Z] [nf-384942d0fdb5b70fe96a466d754d3a48-096d6-5ndvs] [619_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0011] Task initiated on local node
[2026-06-05T14:00:00.626873Z] [nf-384942d0fdb5b70fe96a466d754d3a48-096d6-5ndvs] [619_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0001] Task initiated on local node
[2026-06-05T14:00:00.722783Z] [nf-384942d0fdb5b70fe96a466d754d3a48-096d6-5ndvs] [619_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_019_chr20_0005' launched from sub-workflow 'CallGenome'
[2026-06-05T14:00:00.723505Z] [nf-384942d0fdb5b70fe96a466d754d3a48-096d6-5ndvs] [619_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0008' from sub-workflow 'CallGenome'
[2026-06-05T14:00:00.728376Z] [nf-384942d0fdb5b70fe96a466d754d3a48-096d6-5ndvs] [619_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0008] Task initiated on local node
[2026-06-05T14:00:01.440541Z] [nf-384942d0fdb5b70fe96a466d754d3a48-096d6-5ndvs] [619_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0001' launched from sub-workflow 'CallGenome'
[2026-06-05T14:00:01.441408Z] [nf-384942d0fdb5b70fe96a466d754d3a48-096d6-5ndvs] [619_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0001' from sub-workflow 'CallGenome'
[2026-06-05T14:00:01.445378Z] [nf-384942d0fdb5b70fe96a466d754d3a48-096d6-5ndvs] [619_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0001] Task initiated on local node
[2026-06-05T14:00:01.506307Z] [nf-384942d0fdb5b70fe96a466d754d3a48-096d6-5ndvs] [619_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0001' launched from sub-workflow 'CallGenome'
[2026-06-05T14:00:01.507147Z] [nf-384942d0fdb5b70fe96a466d754d3a48-096d6-5ndvs] [619_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_018_chr19_0000' from sub-workflow 'CallGenome'
[2026-06-05T14:00:01.510483Z] [nf-384942d0fdb5b70fe96a466d754d3a48-096d6-5ndvs] [619_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_018_chr19_0000] Task initiated on local node
[2026-06-05T14:00:01.571732Z] [nf-384942d0fdb5b70fe96a466d754d3a48-096d6-5ndvs] [619_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_018_chr19_0000' launched from sub-workflow 'CallGenome'
[2026-06-05T14:00:01.572591Z] [nf-384942d0fdb5b70fe96a466d754d3a48-096d6-5ndvs] [619_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0016' from sub-workflow 'CallGenome'
[2026-06-05T14:00:01.576515Z] [nf-384942d0fdb5b70fe96a466d754d3a48-096d6-5ndvs] [619_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0016] Task initiated on local node
[2026-06-05T14:00:01.988212Z] [nf-384942d0fdb5b70fe96a466d754d3a48-096d6-5ndvs] [619_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0019' launched from sub-workflow 'CallGenome'
[2026-06-05T14:00:01.989031Z] [nf-384942d0fdb5b70fe96a466d754d3a48-096d6-5ndvs] [619_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0019' from sub-workflow 'CallGenome'
[2026-06-05T14:00:01.992092Z] [nf-384942d0fdb5b70fe96a466d754d3a48-096d6-5ndvs] [619_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0019] Task initiated on local node
[2026-06-05T14:00:02.053175Z] [nf-384942d0fdb5b70fe96a466d754d3a48-096d6-5ndvs] [619_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0005' launched from sub-workflow 'CallGenome'
[2026-06-05T14:00:02.053275Z] [nf-384942d0fdb5b70fe96a466d754d3a48-096d6-5ndvs] [619_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0019' launched from sub-workflow 'CallGenome'
[2026-06-05T14:00:02.054056Z] [nf-384942d0fdb5b70fe96a466d754d3a48-096d6-5ndvs] [619_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_019_chr20_0003' from sub-workflow 'CallGenome'
[2026-06-05T14:00:02.054414Z] [nf-384942d0fdb5b70fe96a466d754d3a48-096d6-5ndvs] [619_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_019_chr20_0005' from sub-workflow 'CallGenome'
[2026-06-05T14:00:02.058571Z] [nf-384942d0fdb5b70fe96a466d754d3a48-096d6-5ndvs] [619_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_019_chr20_0005] Task initiated on local node
[2026-06-05T14:00:02.059480Z] [nf-384942d0fdb5b70fe96a466d754d3a48-096d6-5ndvs] [619_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_019_chr20_0003] Task initiated on local node
[2026-06-05T14:00:02.119127Z] [nf-384942d0fdb5b70fe96a466d754d3a48-096d6-5ndvs] [619_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_019_chr20_0003' launched from sub-workflow 'CallGenome'
[2026-06-05T14:00:02.119232Z] [nf-384942d0fdb5b70fe96a466d754d3a48-096d6-5ndvs] [619_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_019_chr20_0005' launched from sub-workflow 'CallGenome'
[2026-06-05T14:00:02.120023Z] [nf-384942d0fdb5b70fe96a466d754d3a48-096d6-5ndvs] [619_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_019_chr20_0003' from sub-workflow 'CallGenome'
[2026-06-05T14:00:02.120543Z] [nf-384942d0fdb5b70fe96a466d754d3a48-096d6-5ndvs] [619_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_019_chr20_0002' from sub-workflow 'CallGenome'
[2026-06-05T14:00:02.124309Z] [nf-384942d0fdb5b70fe96a466d754d3a48-096d6-5ndvs] [619_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_019_chr20_0003] Task initiated on local node
[2026-06-05T14:00:02.125624Z] [nf-384942d0fdb5b70fe96a466d754d3a48-096d6-5ndvs] [619_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_019_chr20_0002] Task initiated on local node
[2026-06-05T14:00:02.185277Z] [nf-384942d0fdb5b70fe96a466d754d3a48-096d6-5ndvs] [619_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_019_chr20_0002' launched from sub-workflow 'CallGenome'
[2026-06-05T14:00:02.185378Z] [nf-384942d0fdb5b70fe96a466d754d3a48-096d6-5ndvs] [619_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_019_chr20_0003' launched from sub-workflow 'CallGenome'
[2026-06-05T14:00:02.186128Z] [nf-384942d0fdb5b70fe96a466d754d3a48-096d6-5ndvs] [619_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_018_chr19_0002' from sub-workflow 'CallGenome'
[2026-06-05T14:00:02.186540Z] [nf-384942d0fdb5b70fe96a466d754d3a48-096d6-5ndvs] [619_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0018' from sub-workflow 'CallGenome'
[2026-06-05T14:00:02.190908Z] [nf-384942d0fdb5b70fe96a466d754d3a48-096d6-5ndvs] [619_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_018_chr19_0002] Task initiated on local node
[2026-06-05T14:00:02.192000Z] [nf-384942d0fdb5b70fe96a466d754d3a48-096d6-5ndvs] [619_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0018] Task initiated on local node
[2026-06-05T14:00:02.251798Z] [nf-384942d0fdb5b70fe96a466d754d3a48-096d6-5ndvs] [619_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0011' launched from sub-workflow 'CallGenome'
[2026-06-05T14:00:02.252586Z] [nf-384942d0fdb5b70fe96a466d754d3a48-096d6-5ndvs] [619_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0020' from sub-workflow 'CallGenome'
[2026-06-05T14:00:02.256435Z] [nf-384942d0fdb5b70fe96a466d754d3a48-096d6-5ndvs] [619_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0020] Task initiated on local node
[2026-06-05T14:00:02.417726Z] [nf-384942d0fdb5b70fe96a466d754d3a48-096d6-5ndvs] [619_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0003' launched from sub-workflow 'CallGenome'
[2026-06-05T14:00:02.418518Z] [nf-384942d0fdb5b70fe96a466d754d3a48-096d6-5ndvs] [619_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_018_chr19_0001' from sub-workflow 'CallGenome'
[2026-06-05T14:00:02.422351Z] [nf-384942d0fdb5b70fe96a466d754d3a48-096d6-5ndvs] [619_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_018_chr19_0001] Task initiated on local node
[2026-06-05T14:00:02.583636Z] [nf-384942d0fdb5b70fe96a466d754d3a48-096d6-5ndvs] [619_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0006' launched from sub-workflow 'CallGenome'
[2026-06-05T14:00:02.584507Z] [nf-384942d0fdb5b70fe96a466d754d3a48-096d6-5ndvs] [619_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0006' from sub-workflow 'CallGenome'
[2026-06-05T14:00:02.588019Z] [nf-384942d0fdb5b70fe96a466d754d3a48-096d6-5ndvs] [619_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0006] Task initiated on local node
[2026-06-05T14:00:02.600825Z] [nf-384942d0fdb5b70fe96a466d754d3a48-096d6-5ndvs] [619_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0008' launched from sub-workflow 'CallGenome'
[2026-06-05T14:00:02.601597Z] [nf-384942d0fdb5b70fe96a466d754d3a48-096d6-5ndvs] [619_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0005' from sub-workflow 'CallGenome'
[2026-06-05T14:00:02.604896Z] [nf-384942d0fdb5b70fe96a466d754d3a48-096d6-5ndvs] [619_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0005] Task initiated on local node
[2026-06-05T14:00:02.634039Z] [nf-384942d0fdb5b70fe96a466d754d3a48-096d6-5ndvs] [619_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0006' launched from sub-workflow 'CallGenome'
[2026-06-05T14:00:02.634770Z] [nf-384942d0fdb5b70fe96a466d754d3a48-096d6-5ndvs] [619_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0007' from sub-workflow 'CallGenome'
[2026-06-05T14:00:02.638265Z] [nf-384942d0fdb5b70fe96a466d754d3a48-096d6-5ndvs] [619_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0007] Task initiated on local node
[2026-06-05T14:00:02.638934Z] [nf-384942d0fdb5b70fe96a466d754d3a48-096d6-5ndvs] [619_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0005' launched from sub-workflow 'CallGenome'
[2026-06-05T14:00:02.639605Z] [nf-384942d0fdb5b70fe96a466d754d3a48-096d6-5ndvs] [619_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_019_chr20_0001' from sub-workflow 'CallGenome'
[2026-06-05T14:00:02.642567Z] [nf-384942d0fdb5b70fe96a466d754d3a48-096d6-5ndvs] [619_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_019_chr20_0001] Task initiated on local node
[2026-06-05T14:00:02.804294Z] [nf-384942d0fdb5b70fe96a466d754d3a48-096d6-5ndvs] [619_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0016' launched from sub-workflow 'CallGenome'
[2026-06-05T14:00:02.805011Z] [nf-384942d0fdb5b70fe96a466d754d3a48-096d6-5ndvs] [619_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0016' from sub-workflow 'CallGenome'
[2026-06-05T14:00:02.808526Z] [nf-384942d0fdb5b70fe96a466d754d3a48-096d6-5ndvs] [619_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0016] Task initiated on local node
[2026-06-05T14:00:02.869506Z] [nf-384942d0fdb5b70fe96a466d754d3a48-096d6-5ndvs] [619_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0016' launched from sub-workflow 'CallGenome'
[2026-06-05T14:00:02.870274Z] [nf-384942d0fdb5b70fe96a466d754d3a48-096d6-5ndvs] [619_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0012' from sub-workflow 'CallGenome'
[2026-06-05T14:00:02.874297Z] [nf-384942d0fdb5b70fe96a466d754d3a48-096d6-5ndvs] [619_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0012] Task initiated on local node
[2026-06-05T14:00:03.085992Z] [nf-384942d0fdb5b70fe96a466d754d3a48-096d6-5ndvs] [619_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_019_chr20_0001' launched from sub-workflow 'CallGenome'
[2026-06-05T14:00:03.086985Z] [nf-384942d0fdb5b70fe96a466d754d3a48-096d6-5ndvs] [619_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_018_chr19_0000' from sub-workflow 'CallGenome'
[2026-06-05T14:00:03.090541Z] [nf-384942d0fdb5b70fe96a466d754d3a48-096d6-5ndvs] [619_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_018_chr19_0000] Task initiated on local node
[2026-06-05T14:00:03.152244Z] [nf-384942d0fdb5b70fe96a466d754d3a48-096d6-5ndvs] [619_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_018_chr19_0000' launched from sub-workflow 'CallGenome'
[2026-06-05T14:00:03.153337Z] [nf-384942d0fdb5b70fe96a466d754d3a48-096d6-5ndvs] [619_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0003' from sub-workflow 'CallGenome'
[2026-06-05T14:00:03.157015Z] [nf-384942d0fdb5b70fe96a466d754d3a48-096d6-5ndvs] [619_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0003] Task initiated on local node
[2026-06-05T14:00:03.218502Z] [nf-384942d0fdb5b70fe96a466d754d3a48-096d6-5ndvs] [619_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0003' launched from sub-workflow 'CallGenome'
[2026-06-05T14:00:03.219495Z] [nf-384942d0fdb5b70fe96a466d754d3a48-096d6-5ndvs] [619_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0000' from sub-workflow 'CallGenome'
[2026-06-05T14:00:03.223250Z] [nf-384942d0fdb5b70fe96a466d754d3a48-096d6-5ndvs] [619_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0000] Task initiated on local node
[2026-06-05T14:00:03.434926Z] [nf-384942d0fdb5b70fe96a466d754d3a48-096d6-5ndvs] [619_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_018_chr19_0002' launched from sub-workflow 'CallGenome'
[2026-06-05T14:00:03.435904Z] [nf-384942d0fdb5b70fe96a466d754d3a48-096d6-5ndvs] [619_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_019_chr20_0001' from sub-workflow 'CallGenome'
[2026-06-05T14:00:03.439782Z] [nf-384942d0fdb5b70fe96a466d754d3a48-096d6-5ndvs] [619_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_019_chr20_0001] Task initiated on local node
[2026-06-05T14:00:03.500873Z] [nf-384942d0fdb5b70fe96a466d754d3a48-096d6-5ndvs] [619_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_019_chr20_0001' launched from sub-workflow 'CallGenome'
[2026-06-05T14:00:03.501744Z] [nf-384942d0fdb5b70fe96a466d754d3a48-096d6-5ndvs] [619_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_018_chr19_0004' from sub-workflow 'CallGenome'
[2026-06-05T14:00:03.505803Z] [nf-384942d0fdb5b70fe96a466d754d3a48-096d6-5ndvs] [619_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_018_chr19_0004] Task initiated on local node
[2026-06-05T14:00:03.918561Z] [nf-384942d0fdb5b70fe96a466d754d3a48-096d6-5ndvs] [619_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0007' launched from sub-workflow 'CallGenome'
[2026-06-05T14:00:03.919422Z] [nf-384942d0fdb5b70fe96a466d754d3a48-096d6-5ndvs] [619_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0007' from sub-workflow 'CallGenome'
[2026-06-05T14:00:03.923568Z] [nf-384942d0fdb5b70fe96a466d754d3a48-096d6-5ndvs] [619_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0007] Task initiated on local node
[2026-06-05T14:00:03.923935Z] [nf-384942d0fdb5b70fe96a466d754d3a48-096d6-5ndvs] [619_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0012' launched from sub-workflow 'CallGenome'
[2026-06-05T14:00:03.924570Z] [nf-384942d0fdb5b70fe96a466d754d3a48-096d6-5ndvs] [619_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0017' from sub-workflow 'CallGenome'
[2026-06-05T14:00:03.928030Z] [nf-384942d0fdb5b70fe96a466d754d3a48-096d6-5ndvs] [619_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0017] Task initiated on local node
[2026-06-05T14:00:03.957407Z] [nf-384942d0fdb5b70fe96a466d754d3a48-096d6-5ndvs] [619_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0007' launched from sub-workflow 'CallGenome'
[2026-06-05T14:00:03.958227Z] [nf-384942d0fdb5b70fe96a466d754d3a48-096d6-5ndvs] [619_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0014' from sub-workflow 'CallGenome'
[2026-06-05T14:00:03.961734Z] [nf-384942d0fdb5b70fe96a466d754d3a48-096d6-5ndvs] [619_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0014] Task initiated on local node
[2026-06-05T14:00:04.674956Z] [nf-384942d0fdb5b70fe96a466d754d3a48-096d6-5ndvs] [619_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_018_chr19_0003' launched from sub-workflow 'CallGenome'
[2026-06-05T14:00:04.675937Z] [nf-384942d0fdb5b70fe96a466d754d3a48-096d6-5ndvs] [619_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_018_chr19_0003' from sub-workflow 'CallGenome'
[2026-06-05T14:00:04.679659Z] [nf-384942d0fdb5b70fe96a466d754d3a48-096d6-5ndvs] [619_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_018_chr19_0003] Task initiated on local node
[2026-06-05T14:00:04.740971Z] [nf-384942d0fdb5b70fe96a466d754d3a48-096d6-5ndvs] [619_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_018_chr19_0003' launched from sub-workflow 'CallGenome'
[2026-06-05T14:00:04.741929Z] [nf-384942d0fdb5b70fe96a466d754d3a48-096d6-5ndvs] [619_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0008' from sub-workflow 'CallGenome'
[2026-06-05T14:00:04.745562Z] [nf-384942d0fdb5b70fe96a466d754d3a48-096d6-5ndvs] [619_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0008] Task initiated on local node
[2026-06-05T14:00:04.806674Z] [nf-384942d0fdb5b70fe96a466d754d3a48-096d6-5ndvs] [619_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0000' launched from sub-workflow 'CallGenome'
[2026-06-05T14:00:04.806811Z] [nf-384942d0fdb5b70fe96a466d754d3a48-096d6-5ndvs] [619_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0008' launched from sub-workflow 'CallGenome'
[2026-06-05T14:00:04.807638Z] [nf-384942d0fdb5b70fe96a466d754d3a48-096d6-5ndvs] [619_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0012' from sub-workflow 'CallGenome'
[2026-06-05T14:00:04.808227Z] [nf-384942d0fdb5b70fe96a466d754d3a48-096d6-5ndvs] [619_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0015' from sub-workflow 'CallGenome'
[2026-06-05T14:00:04.812747Z] [nf-384942d0fdb5b70fe96a466d754d3a48-096d6-5ndvs] [619_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0012] Task initiated on local node
[2026-06-05T14:00:04.813845Z] [nf-384942d0fdb5b70fe96a466d754d3a48-096d6-5ndvs] [619_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0015] Task initiated on local node
[2026-06-05T14:00:04.873757Z] [nf-384942d0fdb5b70fe96a466d754d3a48-096d6-5ndvs] [619_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0012' launched from sub-workflow 'CallGenome'
[2026-06-05T14:00:04.874645Z] [nf-384942d0fdb5b70fe96a466d754d3a48-096d6-5ndvs] [619_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_019_chr20_0004' from sub-workflow 'CallGenome'
[2026-06-05T14:00:04.878344Z] [nf-384942d0fdb5b70fe96a466d754d3a48-096d6-5ndvs] [619_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_019_chr20_0004] Task initiated on local node
[2026-06-05T14:00:04.939633Z] [nf-384942d0fdb5b70fe96a466d754d3a48-096d6-5ndvs] [619_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_019_chr20_0004' launched from sub-workflow 'CallGenome'
[2026-06-05T14:00:04.940489Z] [nf-384942d0fdb5b70fe96a466d754d3a48-096d6-5ndvs] [619_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_019_chr20_0000' from sub-workflow 'CallGenome'
[2026-06-05T14:00:04.944055Z] [nf-384942d0fdb5b70fe96a466d754d3a48-096d6-5ndvs] [619_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_019_chr20_0000] Task initiated on local node
[2026-06-05T14:00:05.055426Z] [nf-384942d0fdb5b70fe96a466d754d3a48-096d6-5ndvs] [619_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0020' launched from sub-workflow 'CallGenome'
[2026-06-05T14:00:05.056173Z] [nf-384942d0fdb5b70fe96a466d754d3a48-096d6-5ndvs] [619_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0004' from sub-workflow 'CallGenome'
[2026-06-05T14:00:05.060789Z] [nf-384942d0fdb5b70fe96a466d754d3a48-096d6-5ndvs] [619_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0004] Task initiated on local node
[2026-06-05T14:00:05.064523Z] [nf-384942d0fdb5b70fe96a466d754d3a48-096d6-5ndvs] [619_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_018_chr19_0001' launched from sub-workflow 'CallGenome'
[2026-06-05T14:00:05.065097Z] [nf-384942d0fdb5b70fe96a466d754d3a48-096d6-5ndvs] [619_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0020' from sub-workflow 'CallGenome'
[2026-06-05T14:00:05.068645Z] [nf-384942d0fdb5b70fe96a466d754d3a48-096d6-5ndvs] [619_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0020] Task initiated on local node
[2026-06-05T14:00:05.129987Z] [nf-384942d0fdb5b70fe96a466d754d3a48-096d6-5ndvs] [619_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0020' launched from sub-workflow 'CallGenome'
[2026-06-05T14:00:05.130753Z] [nf-384942d0fdb5b70fe96a466d754d3a48-096d6-5ndvs] [619_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_018_chr19_0001' from sub-workflow 'CallGenome'
[2026-06-05T14:00:05.134368Z] [nf-384942d0fdb5b70fe96a466d754d3a48-096d6-5ndvs] [619_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_018_chr19_0001] Task initiated on local node
[2026-06-05T14:00:05.196049Z] [nf-384942d0fdb5b70fe96a466d754d3a48-096d6-5ndvs] [619_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_018_chr19_0001' launched from sub-workflow 'CallGenome'
[2026-06-05T14:00:05.196895Z] [nf-384942d0fdb5b70fe96a466d754d3a48-096d6-5ndvs] [619_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0010' from sub-workflow 'CallGenome'
[2026-06-05T14:00:05.200651Z] [nf-384942d0fdb5b70fe96a466d754d3a48-096d6-5ndvs] [619_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0010] Task initiated on local node
[2026-06-05T14:00:05.612850Z] [nf-384942d0fdb5b70fe96a466d754d3a48-096d6-5ndvs] [619_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0018' launched from sub-workflow 'CallGenome'
[2026-06-05T14:00:05.613456Z] [nf-384942d0fdb5b70fe96a466d754d3a48-096d6-5ndvs] [619_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0009' from sub-workflow 'CallGenome'
[2026-06-05T14:00:05.617478Z] [nf-384942d0fdb5b70fe96a466d754d3a48-096d6-5ndvs] [619_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0009] Task initiated on local node
[2026-06-05T14:00:06.331008Z] [nf-384942d0fdb5b70fe96a466d754d3a48-096d6-5ndvs] [619_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0010' launched from sub-workflow 'CallGenome'
[2026-06-05T14:00:06.331141Z] [nf-384942d0fdb5b70fe96a466d754d3a48-096d6-5ndvs] [619_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0014' launched from sub-workflow 'CallGenome'
[2026-06-05T14:00:06.331828Z] [nf-384942d0fdb5b70fe96a466d754d3a48-096d6-5ndvs] [619_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0014' from sub-workflow 'CallGenome'
[2026-06-05T14:00:06.332252Z] [nf-384942d0fdb5b70fe96a466d754d3a48-096d6-5ndvs] [619_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0010' from sub-workflow 'CallGenome'
[2026-06-05T14:00:06.336075Z] [nf-384942d0fdb5b70fe96a466d754d3a48-096d6-5ndvs] [619_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0010] Task initiated on local node
[2026-06-05T14:00:06.337180Z] [nf-384942d0fdb5b70fe96a466d754d3a48-096d6-5ndvs] [619_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0014] Task initiated on local node
[2026-06-05T14:00:06.397517Z] [nf-384942d0fdb5b70fe96a466d754d3a48-096d6-5ndvs] [619_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0010' launched from sub-workflow 'CallGenome'
[2026-06-05T14:00:06.397669Z] [nf-384942d0fdb5b70fe96a466d754d3a48-096d6-5ndvs] [619_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0014' launched from sub-workflow 'CallGenome'
[2026-06-05T14:00:06.398326Z] [nf-384942d0fdb5b70fe96a466d754d3a48-096d6-5ndvs] [619_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_019_chr20_0004' from sub-workflow 'CallGenome'
[2026-06-05T14:00:06.399061Z] [nf-384942d0fdb5b70fe96a466d754d3a48-096d6-5ndvs] [619_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0018' from sub-workflow 'CallGenome'
[2026-06-05T14:00:06.402526Z] [nf-384942d0fdb5b70fe96a466d754d3a48-096d6-5ndvs] [619_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_019_chr20_0004] Task initiated on local node
[2026-06-05T14:00:06.403803Z] [nf-384942d0fdb5b70fe96a466d754d3a48-096d6-5ndvs] [619_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0018] Task initiated on local node
[2026-06-05T14:00:06.463726Z] [nf-384942d0fdb5b70fe96a466d754d3a48-096d6-5ndvs] [619_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_019_chr20_0004' launched from sub-workflow 'CallGenome'
[2026-06-05T14:00:06.463865Z] [nf-384942d0fdb5b70fe96a466d754d3a48-096d6-5ndvs] [619_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0018' launched from sub-workflow 'CallGenome'
[2026-06-05T14:00:06.464529Z] [nf-384942d0fdb5b70fe96a466d754d3a48-096d6-5ndvs] [619_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0013' from sub-workflow 'CallGenome'
[2026-06-05T14:00:06.464874Z] [nf-384942d0fdb5b70fe96a466d754d3a48-096d6-5ndvs] [619_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_018_chr19_0002' from sub-workflow 'CallGenome'
[2026-06-05T14:00:06.468717Z] [nf-384942d0fdb5b70fe96a466d754d3a48-096d6-5ndvs] [619_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_018_chr19_0002] Task initiated on local node
[2026-06-05T14:00:06.470443Z] [nf-384942d0fdb5b70fe96a466d754d3a48-096d6-5ndvs] [619_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0013] Task initiated on local node
[2026-06-05T14:00:06.529940Z] [nf-384942d0fdb5b70fe96a466d754d3a48-096d6-5ndvs] [619_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0017' launched from sub-workflow 'CallGenome'
[2026-06-05T14:00:06.530067Z] [nf-384942d0fdb5b70fe96a466d754d3a48-096d6-5ndvs] [619_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_018_chr19_0002' launched from sub-workflow 'CallGenome'
[2026-06-05T14:00:06.530687Z] [nf-384942d0fdb5b70fe96a466d754d3a48-096d6-5ndvs] [619_1] [TaskManager] Launching command task: 'CallGenome+fixVcfHeader_chromId_001_chr2_0000' from sub-workflow 'CallGenome'
[2026-06-05T14:00:06.531054Z] [nf-384942d0fdb5b70fe96a466d754d3a48-096d6-5ndvs] [619_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0011' from sub-workflow 'CallGenome'
[2026-06-05T14:00:06.535085Z] [nf-384942d0fdb5b70fe96a466d754d3a48-096d6-5ndvs] [619_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0011] Task initiated on local node
[2026-06-05T14:00:06.536209Z] [nf-384942d0fdb5b70fe96a466d754d3a48-096d6-5ndvs] [619_1] [TaskRunner:CallGenome+fixVcfHeader_chromId_001_chr2_0000] Task initiated on local node
[2026-06-05T14:00:06.596326Z] [nf-384942d0fdb5b70fe96a466d754d3a48-096d6-5ndvs] [619_1] [TaskManager] Completed command task: 'CallGenome+fixVcfHeader_chromId_001_chr2_0000' launched from sub-workflow 'CallGenome'
[2026-06-05T14:00:06.596434Z] [nf-384942d0fdb5b70fe96a466d754d3a48-096d6-5ndvs] [619_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0011' launched from sub-workflow 'CallGenome'
[2026-06-05T14:00:06.597051Z] [nf-384942d0fdb5b70fe96a466d754d3a48-096d6-5ndvs] [619_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0000' from sub-workflow 'CallGenome'
[2026-06-05T14:00:06.597650Z] [nf-384942d0fdb5b70fe96a466d754d3a48-096d6-5ndvs] [619_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_019_chr20_0002' from sub-workflow 'CallGenome'
[2026-06-05T14:00:06.602058Z] [nf-384942d0fdb5b70fe96a466d754d3a48-096d6-5ndvs] [619_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0000] Task initiated on local node
[2026-06-05T14:00:06.604198Z] [nf-384942d0fdb5b70fe96a466d754d3a48-096d6-5ndvs] [619_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_019_chr20_0002] Task initiated on local node
[2026-06-05T14:00:06.663380Z] [nf-384942d0fdb5b70fe96a466d754d3a48-096d6-5ndvs] [619_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0000' launched from sub-workflow 'CallGenome'
[2026-06-05T14:00:06.663504Z] [nf-384942d0fdb5b70fe96a466d754d3a48-096d6-5ndvs] [619_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0015' launched from sub-workflow 'CallGenome'
[2026-06-05T14:00:06.663533Z] [nf-384942d0fdb5b70fe96a466d754d3a48-096d6-5ndvs] [619_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_019_chr20_0002' launched from sub-workflow 'CallGenome'
[2026-06-05T14:00:06.664179Z] [nf-384942d0fdb5b70fe96a466d754d3a48-096d6-5ndvs] [619_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0015' from sub-workflow 'CallGenome'
[2026-06-05T14:00:06.664566Z] [nf-384942d0fdb5b70fe96a466d754d3a48-096d6-5ndvs] [619_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0017' from sub-workflow 'CallGenome'
[2026-06-05T14:00:06.665038Z] [nf-384942d0fdb5b70fe96a466d754d3a48-096d6-5ndvs] [619_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0002' from sub-workflow 'CallGenome'
[2026-06-05T14:00:06.669468Z] [nf-384942d0fdb5b70fe96a466d754d3a48-096d6-5ndvs] [619_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0015] Task initiated on local node
[2026-06-05T14:00:06.671421Z] [nf-384942d0fdb5b70fe96a466d754d3a48-096d6-5ndvs] [619_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0017] Task initiated on local node
[2026-06-05T14:00:06.672495Z] [nf-384942d0fdb5b70fe96a466d754d3a48-096d6-5ndvs] [619_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0002] Task initiated on local node
[2026-06-05T14:00:06.732438Z] [nf-384942d0fdb5b70fe96a466d754d3a48-096d6-5ndvs] [619_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0017' launched from sub-workflow 'CallGenome'
[2026-06-05T14:00:06.732576Z] [nf-384942d0fdb5b70fe96a466d754d3a48-096d6-5ndvs] [619_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0015' launched from sub-workflow 'CallGenome'
[2026-06-05T14:00:06.732890Z] [nf-384942d0fdb5b70fe96a466d754d3a48-096d6-5ndvs] [619_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0004' launched from sub-workflow 'CallGenome'
[2026-06-05T14:00:06.733453Z] [nf-384942d0fdb5b70fe96a466d754d3a48-096d6-5ndvs] [619_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0004' from sub-workflow 'CallGenome'
[2026-06-05T14:00:06.737029Z] [nf-384942d0fdb5b70fe96a466d754d3a48-096d6-5ndvs] [619_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0004] Task initiated on local node
[2026-06-05T14:00:06.800031Z] [nf-384942d0fdb5b70fe96a466d754d3a48-096d6-5ndvs] [619_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0004' launched from sub-workflow 'CallGenome'
[2026-06-05T14:00:07.115303Z] [nf-384942d0fdb5b70fe96a466d754d3a48-096d6-5ndvs] [619_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_019_chr20_0000' launched from sub-workflow 'CallGenome'
[2026-06-05T14:00:07.116124Z] [nf-384942d0fdb5b70fe96a466d754d3a48-096d6-5ndvs] [619_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_019_chr20_0000' from sub-workflow 'CallGenome'
[2026-06-05T14:00:07.120064Z] [nf-384942d0fdb5b70fe96a466d754d3a48-096d6-5ndvs] [619_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_019_chr20_0000] Task initiated on local node
[2026-06-05T14:00:07.181133Z] [nf-384942d0fdb5b70fe96a466d754d3a48-096d6-5ndvs] [619_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_019_chr20_0000' launched from sub-workflow 'CallGenome'
[2026-06-05T14:00:07.546482Z] [nf-384942d0fdb5b70fe96a466d754d3a48-096d6-5ndvs] [619_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0009' launched from sub-workflow 'CallGenome'
[2026-06-05T14:00:07.547020Z] [nf-384942d0fdb5b70fe96a466d754d3a48-096d6-5ndvs] [619_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0009' from sub-workflow 'CallGenome'
[2026-06-05T14:00:07.550763Z] [nf-384942d0fdb5b70fe96a466d754d3a48-096d6-5ndvs] [619_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0009] Task initiated on local node
[2026-06-05T14:00:07.612125Z] [nf-384942d0fdb5b70fe96a466d754d3a48-096d6-5ndvs] [619_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0009' launched from sub-workflow 'CallGenome'
[2026-06-05T14:00:08.078057Z] [nf-384942d0fdb5b70fe96a466d754d3a48-096d6-5ndvs] [619_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_018_chr19_0004' launched from sub-workflow 'CallGenome'
[2026-06-05T14:00:08.078173Z] [nf-384942d0fdb5b70fe96a466d754d3a48-096d6-5ndvs] [619_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0013' launched from sub-workflow 'CallGenome'
[2026-06-05T14:00:08.078635Z] [nf-384942d0fdb5b70fe96a466d754d3a48-096d6-5ndvs] [619_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0013' from sub-workflow 'CallGenome'
[2026-06-05T14:00:08.079102Z] [nf-384942d0fdb5b70fe96a466d754d3a48-096d6-5ndvs] [619_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_018_chr19_0004' from sub-workflow 'CallGenome'
[2026-06-05T14:00:08.083231Z] [nf-384942d0fdb5b70fe96a466d754d3a48-096d6-5ndvs] [619_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0013] Task initiated on local node
[2026-06-05T14:00:08.084534Z] [nf-384942d0fdb5b70fe96a466d754d3a48-096d6-5ndvs] [619_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_018_chr19_0004] Task initiated on local node
[2026-06-05T14:00:08.144458Z] [nf-384942d0fdb5b70fe96a466d754d3a48-096d6-5ndvs] [619_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0013' launched from sub-workflow 'CallGenome'
[2026-06-05T14:00:08.144567Z] [nf-384942d0fdb5b70fe96a466d754d3a48-096d6-5ndvs] [619_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_018_chr19_0004' launched from sub-workflow 'CallGenome'
[2026-06-05T14:00:09.713867Z] [nf-384942d0fdb5b70fe96a466d754d3a48-096d6-5ndvs] [619_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0002' launched from sub-workflow 'CallGenome'
[2026-06-05T14:00:09.714428Z] [nf-384942d0fdb5b70fe96a466d754d3a48-096d6-5ndvs] [619_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0002' from sub-workflow 'CallGenome'
[2026-06-05T14:00:09.717695Z] [nf-384942d0fdb5b70fe96a466d754d3a48-096d6-5ndvs] [619_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0002] Task initiated on local node
[2026-06-05T14:00:09.779090Z] [nf-384942d0fdb5b70fe96a466d754d3a48-096d6-5ndvs] [619_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0002' launched from sub-workflow 'CallGenome'
[2026-06-05T14:00:09.779501Z] [nf-384942d0fdb5b70fe96a466d754d3a48-096d6-5ndvs] [619_1] [TaskManager] Completed command task: 'CallGenome+completedAllGenomeSegments' launched from sub-workflow 'CallGenome'
[2026-06-05T14:00:09.779698Z] [nf-384942d0fdb5b70fe96a466d754d3a48-096d6-5ndvs] [619_1] [TaskManager] Launching command task: 'CallGenome+mergeRunStats' from sub-workflow 'CallGenome'
[2026-06-05T14:00:09.780314Z] [nf-384942d0fdb5b70fe96a466d754d3a48-096d6-5ndvs] [619_1] [TaskManager] Launching command task: 'CallGenome+SNV_concat_vcf' from sub-workflow 'CallGenome'
[2026-06-05T14:00:09.780870Z] [nf-384942d0fdb5b70fe96a466d754d3a48-096d6-5ndvs] [619_1] [TaskManager] Launching command task: 'CallGenome+Indel_concat_vcf' from sub-workflow 'CallGenome'
[2026-06-05T14:00:09.788116Z] [nf-384942d0fdb5b70fe96a466d754d3a48-096d6-5ndvs] [619_1] [TaskRunner:CallGenome+SNV_concat_vcf] Task initiated on local node
[2026-06-05T14:00:09.788564Z] [nf-384942d0fdb5b70fe96a466d754d3a48-096d6-5ndvs] [619_1] [TaskRunner:CallGenome+Indel_concat_vcf] Task initiated on local node
[2026-06-05T14:00:09.813585Z] [nf-384942d0fdb5b70fe96a466d754d3a48-096d6-5ndvs] [619_1] [TaskManager] Completed command task: 'CallGenome+SNV_concat_vcf' launched from sub-workflow 'CallGenome'
[2026-06-05T14:00:09.814491Z] [nf-384942d0fdb5b70fe96a466d754d3a48-096d6-5ndvs] [619_1] [TaskRunner:CallGenome+mergeRunStats] Task initiated on local node
[2026-06-05T14:00:09.814789Z] [nf-384942d0fdb5b70fe96a466d754d3a48-096d6-5ndvs] [619_1] [TaskManager] Launching command task: 'CallGenome+SNV_index_vcf' from sub-workflow 'CallGenome'
[2026-06-05T14:00:09.815263Z] [nf-384942d0fdb5b70fe96a466d754d3a48-096d6-5ndvs] [619_1] [TaskManager] Completed command task: 'CallGenome+Indel_concat_vcf' launched from sub-workflow 'CallGenome'
[2026-06-05T14:00:09.815684Z] [nf-384942d0fdb5b70fe96a466d754d3a48-096d6-5ndvs] [619_1] [TaskManager] Launching command task: 'CallGenome+Indel_index_vcf' from sub-workflow 'CallGenome'
[2026-06-05T14:00:09.816692Z] [nf-384942d0fdb5b70fe96a466d754d3a48-096d6-5ndvs] [619_1] [TaskManager] Completed command task: 'CallGenome+mergeRunStats' launched from sub-workflow 'CallGenome'
[2026-06-05T14:00:09.820506Z] [nf-384942d0fdb5b70fe96a466d754d3a48-096d6-5ndvs] [619_1] [TaskRunner:CallGenome+SNV_index_vcf] Task initiated on local node
[2026-06-05T14:00:09.821397Z] [nf-384942d0fdb5b70fe96a466d754d3a48-096d6-5ndvs] [619_1] [TaskRunner:CallGenome+Indel_index_vcf] Task initiated on local node
[2026-06-05T14:00:09.851290Z] [nf-384942d0fdb5b70fe96a466d754d3a48-096d6-5ndvs] [619_1] [TaskManager] Completed command task: 'CallGenome+SNV_index_vcf' launched from sub-workflow 'CallGenome'
[2026-06-05T14:00:09.851386Z] [nf-384942d0fdb5b70fe96a466d754d3a48-096d6-5ndvs] [619_1] [TaskManager] Completed command task: 'CallGenome+Indel_index_vcf' launched from sub-workflow 'CallGenome'
[2026-06-05T14:00:09.851664Z] [nf-384942d0fdb5b70fe96a466d754d3a48-096d6-5ndvs] [619_1] [TaskManager] Launching command task: 'CallGenome+removeTmpDir' from sub-workflow 'CallGenome'
[2026-06-05T14:00:09.854968Z] [nf-384942d0fdb5b70fe96a466d754d3a48-096d6-5ndvs] [619_1] [TaskRunner:CallGenome+removeTmpDir] Task initiated on local node
[2026-06-05T14:00:09.884457Z] [nf-384942d0fdb5b70fe96a466d754d3a48-096d6-5ndvs] [619_1] [TaskManager] Completed command task: 'CallGenome+removeTmpDir' launched from sub-workflow 'CallGenome'
[2026-06-05T14:00:11.152011Z] [nf-384942d0fdb5b70fe96a466d754d3a48-096d6-5ndvs] [619_1] [TaskManager] Completed sub-workflow task: 'CallGenome' launched from master workflow
[2026-06-05T14:00:19.441251Z] [nf-384942d0fdb5b70fe96a466d754d3a48-096d6-5ndvs] [619_1] [WorkflowRunner] Strelka somatic workflow successfully completed.
[2026-06-05T14:00:19.441251Z] [nf-384942d0fdb5b70fe96a466d754d3a48-096d6-5ndvs] [619_1] [WorkflowRunner] 
[2026-06-05T14:00:19.441251Z] [nf-384942d0fdb5b70fe96a466d754d3a48-096d6-5ndvs] [619_1] [WorkflowRunner] 	workflow version: 2.9.10
[2026-06-05T14:00:19.441345Z] [nf-384942d0fdb5b70fe96a466d754d3a48-096d6-5ndvs] [619_1] [WorkflowRunner] 
[2026-06-05T14:00:19.441354Z] [nf-384942d0fdb5b70fe96a466d754d3a48-096d6-5ndvs] [619_1] [WorkflowRunner] Workflow successfully completed all tasks
[2026-06-05T14:00:19.441362Z] [nf-384942d0fdb5b70fe96a466d754d3a48-096d6-5ndvs] [619_1] [WorkflowRunner] Elapsed time for full workflow: 18 sec