File Info

Filename
.command.err
Full Path
s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/8f/26d043b8cda35227e7b3aefbae0d19/.command.err
Size
68.3 KB
Task
DAQ:CONTROL_VARIANT_CALLING:CONTROL_SOMATIC_VC:BAM_VARIANT_CALLING_SOMATIC_STRELKA:STRELKA_SOMATIC (positive_somatic_control_2;chr10_74133927-74134264.bed)
Attempt

Content

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[2026-06-05T14:00:03.756777Z] [nf-8f26d043b8cda35227e7b3aefbae0d19-712af-jxsrp] [616_1] [WorkflowRunner] Initiating pyFlow run
[2026-06-05T14:00:03.761169Z] [nf-8f26d043b8cda35227e7b3aefbae0d19-712af-jxsrp] [616_1] [WorkflowRunner] pyFlowClientWorkflowClass: StrelkaSomaticWorkflow
[2026-06-05T14:00:03.761205Z] [nf-8f26d043b8cda35227e7b3aefbae0d19-712af-jxsrp] [616_1] [WorkflowRunner] pyFlowVersion: 1.1.20
[2026-06-05T14:00:03.761212Z] [nf-8f26d043b8cda35227e7b3aefbae0d19-712af-jxsrp] [616_1] [WorkflowRunner] pythonVersion: 2.7.15.final.0
[2026-06-05T14:00:03.761217Z] [nf-8f26d043b8cda35227e7b3aefbae0d19-712af-jxsrp] [616_1] [WorkflowRunner] WorkingDir: '/tmp/nxf.XXXXB3nWvE'
[2026-06-05T14:00:03.761221Z] [nf-8f26d043b8cda35227e7b3aefbae0d19-712af-jxsrp] [616_1] [WorkflowRunner] ProcessCmdLine: '/var/tmp/strelka/runWorkflow.py -m local -j 8'
[2026-06-05T14:00:03.761227Z] [nf-8f26d043b8cda35227e7b3aefbae0d19-712af-jxsrp] [616_1] [WorkflowRunner] [RunParameters] mode: local
[2026-06-05T14:00:03.761230Z] [nf-8f26d043b8cda35227e7b3aefbae0d19-712af-jxsrp] [616_1] [WorkflowRunner] [RunParameters] nCores: 8
[2026-06-05T14:00:03.761237Z] [nf-8f26d043b8cda35227e7b3aefbae0d19-712af-jxsrp] [616_1] [WorkflowRunner] [RunParameters] memMb: 3047507
[2026-06-05T14:00:03.761241Z] [nf-8f26d043b8cda35227e7b3aefbae0d19-712af-jxsrp] [616_1] [WorkflowRunner] [RunParameters] dataDir: /var/tmp/strelka/workspace/pyflow.data
[2026-06-05T14:00:03.761245Z] [nf-8f26d043b8cda35227e7b3aefbae0d19-712af-jxsrp] [616_1] [WorkflowRunner] [RunParameters] isDryRun: False
[2026-06-05T14:00:03.761248Z] [nf-8f26d043b8cda35227e7b3aefbae0d19-712af-jxsrp] [616_1] [WorkflowRunner] [RunParameters] isContinue: False
[2026-06-05T14:00:03.761252Z] [nf-8f26d043b8cda35227e7b3aefbae0d19-712af-jxsrp] [616_1] [WorkflowRunner] [RunParameters] isForceContinue: True
[2026-06-05T14:00:03.761256Z] [nf-8f26d043b8cda35227e7b3aefbae0d19-712af-jxsrp] [616_1] [WorkflowRunner] [RunParameters] mailTo: ''
[2026-06-05T14:00:03.762514Z] [nf-8f26d043b8cda35227e7b3aefbae0d19-712af-jxsrp] [616_1] [TaskRunner:masterWorkflow] Starting task specification for master workflow
[2026-06-05T14:00:03.762581Z] [nf-8f26d043b8cda35227e7b3aefbae0d19-712af-jxsrp] [616_1] [StrelkaSomaticWorkflow] Initiating Strelka somatic workflow version: 2.9.10
[2026-06-05T14:00:03.768535Z] [nf-8f26d043b8cda35227e7b3aefbae0d19-712af-jxsrp] [616_1] [WorkflowRunner] Adding sub-workflow task 'CallGenome' to master workflow
[2026-06-05T14:00:03.769365Z] [nf-8f26d043b8cda35227e7b3aefbae0d19-712af-jxsrp] [616_1] [TaskManager] Launching sub-workflow task: 'CallGenome' from master workflow
[2026-06-05T14:00:03.769651Z] [nf-8f26d043b8cda35227e7b3aefbae0d19-712af-jxsrp] [616_1] [TaskRunner:masterWorkflow] Finished task specification for master workflow
[2026-06-05T14:00:03.769900Z] [nf-8f26d043b8cda35227e7b3aefbae0d19-712af-jxsrp] [616_1] [TaskRunner:CallGenome] Starting task specification for sub-workflow
[2026-06-05T14:00:03.770229Z] [nf-8f26d043b8cda35227e7b3aefbae0d19-712af-jxsrp] [616_1] [WorkflowRunner] Adding command task 'CallGenome+makeTmpDir' to sub-workflow 'CallGenome'
[2026-06-05T14:00:03.770951Z] [nf-8f26d043b8cda35227e7b3aefbae0d19-712af-jxsrp] [616_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0000' to sub-workflow 'CallGenome'
[2026-06-05T14:00:03.771047Z] [nf-8f26d043b8cda35227e7b3aefbae0d19-712af-jxsrp] [616_1] [WorkflowRunner] Adding command task 'CallGenome+fixVcfHeader_chromId_009_chr10_0000' to sub-workflow 'CallGenome'
[2026-06-05T14:00:03.771117Z] [nf-8f26d043b8cda35227e7b3aefbae0d19-712af-jxsrp] [616_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0000' to sub-workflow 'CallGenome'
[2026-06-05T14:00:03.771249Z] [nf-8f26d043b8cda35227e7b3aefbae0d19-712af-jxsrp] [616_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0001' to sub-workflow 'CallGenome'
[2026-06-05T14:00:03.771717Z] [nf-8f26d043b8cda35227e7b3aefbae0d19-712af-jxsrp] [616_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0001' to sub-workflow 'CallGenome'
[2026-06-05T14:00:03.771868Z] [nf-8f26d043b8cda35227e7b3aefbae0d19-712af-jxsrp] [616_1] [TaskManager] Launching command task: 'CallGenome+makeTmpDir' from sub-workflow 'CallGenome'
[2026-06-05T14:00:03.772086Z] [nf-8f26d043b8cda35227e7b3aefbae0d19-712af-jxsrp] [616_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0002' to sub-workflow 'CallGenome'
[2026-06-05T14:00:03.772267Z] [nf-8f26d043b8cda35227e7b3aefbae0d19-712af-jxsrp] [616_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0002' to sub-workflow 'CallGenome'
[2026-06-05T14:00:03.772472Z] [nf-8f26d043b8cda35227e7b3aefbae0d19-712af-jxsrp] [616_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0003' to sub-workflow 'CallGenome'
[2026-06-05T14:00:03.772840Z] [nf-8f26d043b8cda35227e7b3aefbae0d19-712af-jxsrp] [616_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0003' to sub-workflow 'CallGenome'
[2026-06-05T14:00:03.773598Z] [nf-8f26d043b8cda35227e7b3aefbae0d19-712af-jxsrp] [616_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0004' to sub-workflow 'CallGenome'
[2026-06-05T14:00:03.775286Z] [nf-8f26d043b8cda35227e7b3aefbae0d19-712af-jxsrp] [616_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0004' to sub-workflow 'CallGenome'
[2026-06-05T14:00:03.775878Z] [nf-8f26d043b8cda35227e7b3aefbae0d19-712af-jxsrp] [616_1] [TaskRunner:CallGenome+makeTmpDir] Task initiated on local node
[2026-06-05T14:00:03.776041Z] [nf-8f26d043b8cda35227e7b3aefbae0d19-712af-jxsrp] [616_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0005' to sub-workflow 'CallGenome'
[2026-06-05T14:00:03.776415Z] [nf-8f26d043b8cda35227e7b3aefbae0d19-712af-jxsrp] [616_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0005' to sub-workflow 'CallGenome'
[2026-06-05T14:00:03.776542Z] [nf-8f26d043b8cda35227e7b3aefbae0d19-712af-jxsrp] [616_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0006' to sub-workflow 'CallGenome'
[2026-06-05T14:00:03.776610Z] [nf-8f26d043b8cda35227e7b3aefbae0d19-712af-jxsrp] [616_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0006' to sub-workflow 'CallGenome'
[2026-06-05T14:00:03.776721Z] [nf-8f26d043b8cda35227e7b3aefbae0d19-712af-jxsrp] [616_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0007' to sub-workflow 'CallGenome'
[2026-06-05T14:00:03.776782Z] [nf-8f26d043b8cda35227e7b3aefbae0d19-712af-jxsrp] [616_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0007' to sub-workflow 'CallGenome'
[2026-06-05T14:00:03.776965Z] [nf-8f26d043b8cda35227e7b3aefbae0d19-712af-jxsrp] [616_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0008' to sub-workflow 'CallGenome'
[2026-06-05T14:00:03.777032Z] [nf-8f26d043b8cda35227e7b3aefbae0d19-712af-jxsrp] [616_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0008' to sub-workflow 'CallGenome'
[2026-06-05T14:00:03.777153Z] [nf-8f26d043b8cda35227e7b3aefbae0d19-712af-jxsrp] [616_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0009' to sub-workflow 'CallGenome'
[2026-06-05T14:00:03.777220Z] [nf-8f26d043b8cda35227e7b3aefbae0d19-712af-jxsrp] [616_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0009' to sub-workflow 'CallGenome'
[2026-06-05T14:00:03.777352Z] [nf-8f26d043b8cda35227e7b3aefbae0d19-712af-jxsrp] [616_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0010' to sub-workflow 'CallGenome'
[2026-06-05T14:00:03.777669Z] [nf-8f26d043b8cda35227e7b3aefbae0d19-712af-jxsrp] [616_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0010' to sub-workflow 'CallGenome'
[2026-06-05T14:00:03.777980Z] [nf-8f26d043b8cda35227e7b3aefbae0d19-712af-jxsrp] [616_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0011' to sub-workflow 'CallGenome'
[2026-06-05T14:00:03.778048Z] [nf-8f26d043b8cda35227e7b3aefbae0d19-712af-jxsrp] [616_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0011' to sub-workflow 'CallGenome'
[2026-06-05T14:00:03.778167Z] [nf-8f26d043b8cda35227e7b3aefbae0d19-712af-jxsrp] [616_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_010_chr11_0000' to sub-workflow 'CallGenome'
[2026-06-05T14:00:03.778234Z] [nf-8f26d043b8cda35227e7b3aefbae0d19-712af-jxsrp] [616_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_010_chr11_0000' to sub-workflow 'CallGenome'
[2026-06-05T14:00:03.778359Z] [nf-8f26d043b8cda35227e7b3aefbae0d19-712af-jxsrp] [616_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_010_chr11_0001' to sub-workflow 'CallGenome'
[2026-06-05T14:00:03.778495Z] [nf-8f26d043b8cda35227e7b3aefbae0d19-712af-jxsrp] [616_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_010_chr11_0001' to sub-workflow 'CallGenome'
[2026-06-05T14:00:03.778659Z] [nf-8f26d043b8cda35227e7b3aefbae0d19-712af-jxsrp] [616_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_010_chr11_0002' to sub-workflow 'CallGenome'
[2026-06-05T14:00:03.778733Z] [nf-8f26d043b8cda35227e7b3aefbae0d19-712af-jxsrp] [616_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_010_chr11_0002' to sub-workflow 'CallGenome'
[2026-06-05T14:00:03.778849Z] [nf-8f26d043b8cda35227e7b3aefbae0d19-712af-jxsrp] [616_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_010_chr11_0003' to sub-workflow 'CallGenome'
[2026-06-05T14:00:03.778947Z] [nf-8f26d043b8cda35227e7b3aefbae0d19-712af-jxsrp] [616_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_010_chr11_0003' to sub-workflow 'CallGenome'
[2026-06-05T14:00:03.779379Z] [nf-8f26d043b8cda35227e7b3aefbae0d19-712af-jxsrp] [616_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_010_chr11_0004' to sub-workflow 'CallGenome'
[2026-06-05T14:00:03.779737Z] [nf-8f26d043b8cda35227e7b3aefbae0d19-712af-jxsrp] [616_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_010_chr11_0004' to sub-workflow 'CallGenome'
[2026-06-05T14:00:03.779850Z] [nf-8f26d043b8cda35227e7b3aefbae0d19-712af-jxsrp] [616_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_010_chr11_0005' to sub-workflow 'CallGenome'
[2026-06-05T14:00:03.779912Z] [nf-8f26d043b8cda35227e7b3aefbae0d19-712af-jxsrp] [616_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_010_chr11_0005' to sub-workflow 'CallGenome'
[2026-06-05T14:00:03.780023Z] [nf-8f26d043b8cda35227e7b3aefbae0d19-712af-jxsrp] [616_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_010_chr11_0006' to sub-workflow 'CallGenome'
[2026-06-05T14:00:03.780086Z] [nf-8f26d043b8cda35227e7b3aefbae0d19-712af-jxsrp] [616_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_010_chr11_0006' to sub-workflow 'CallGenome'
[2026-06-05T14:00:03.780195Z] [nf-8f26d043b8cda35227e7b3aefbae0d19-712af-jxsrp] [616_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_010_chr11_0007' to sub-workflow 'CallGenome'
[2026-06-05T14:00:03.780269Z] [nf-8f26d043b8cda35227e7b3aefbae0d19-712af-jxsrp] [616_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_010_chr11_0007' to sub-workflow 'CallGenome'
[2026-06-05T14:00:03.780377Z] [nf-8f26d043b8cda35227e7b3aefbae0d19-712af-jxsrp] [616_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_010_chr11_0008' to sub-workflow 'CallGenome'
[2026-06-05T14:00:03.780441Z] [nf-8f26d043b8cda35227e7b3aefbae0d19-712af-jxsrp] [616_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_010_chr11_0008' to sub-workflow 'CallGenome'
[2026-06-05T14:00:03.780553Z] [nf-8f26d043b8cda35227e7b3aefbae0d19-712af-jxsrp] [616_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_010_chr11_0009' to sub-workflow 'CallGenome'
[2026-06-05T14:00:03.780617Z] [nf-8f26d043b8cda35227e7b3aefbae0d19-712af-jxsrp] [616_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_010_chr11_0009' to sub-workflow 'CallGenome'
[2026-06-05T14:00:03.780781Z] [nf-8f26d043b8cda35227e7b3aefbae0d19-712af-jxsrp] [616_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_010_chr11_0010' to sub-workflow 'CallGenome'
[2026-06-05T14:00:03.780951Z] [nf-8f26d043b8cda35227e7b3aefbae0d19-712af-jxsrp] [616_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_010_chr11_0010' to sub-workflow 'CallGenome'
[2026-06-05T14:00:03.781789Z] [nf-8f26d043b8cda35227e7b3aefbae0d19-712af-jxsrp] [616_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_010_chr11_0011' to sub-workflow 'CallGenome'
[2026-06-05T14:00:03.782238Z] [nf-8f26d043b8cda35227e7b3aefbae0d19-712af-jxsrp] [616_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_010_chr11_0011' to sub-workflow 'CallGenome'
[2026-06-05T14:00:03.782415Z] [nf-8f26d043b8cda35227e7b3aefbae0d19-712af-jxsrp] [616_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_011_chr12_0000' to sub-workflow 'CallGenome'
[2026-06-05T14:00:03.782489Z] [nf-8f26d043b8cda35227e7b3aefbae0d19-712af-jxsrp] [616_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_011_chr12_0000' to sub-workflow 'CallGenome'
[2026-06-05T14:00:03.782609Z] [nf-8f26d043b8cda35227e7b3aefbae0d19-712af-jxsrp] [616_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_011_chr12_0001' to sub-workflow 'CallGenome'
[2026-06-05T14:00:03.782672Z] [nf-8f26d043b8cda35227e7b3aefbae0d19-712af-jxsrp] [616_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_011_chr12_0001' to sub-workflow 'CallGenome'
[2026-06-05T14:00:03.782788Z] [nf-8f26d043b8cda35227e7b3aefbae0d19-712af-jxsrp] [616_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_011_chr12_0002' to sub-workflow 'CallGenome'
[2026-06-05T14:00:03.782854Z] [nf-8f26d043b8cda35227e7b3aefbae0d19-712af-jxsrp] [616_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_011_chr12_0002' to sub-workflow 'CallGenome'
[2026-06-05T14:00:03.782962Z] [nf-8f26d043b8cda35227e7b3aefbae0d19-712af-jxsrp] [616_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_011_chr12_0003' to sub-workflow 'CallGenome'
[2026-06-05T14:00:03.783027Z] [nf-8f26d043b8cda35227e7b3aefbae0d19-712af-jxsrp] [616_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_011_chr12_0003' to sub-workflow 'CallGenome'
[2026-06-05T14:00:03.783144Z] [nf-8f26d043b8cda35227e7b3aefbae0d19-712af-jxsrp] [616_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_011_chr12_0004' to sub-workflow 'CallGenome'
[2026-06-05T14:00:03.783378Z] [nf-8f26d043b8cda35227e7b3aefbae0d19-712af-jxsrp] [616_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_011_chr12_0004' to sub-workflow 'CallGenome'
[2026-06-05T14:00:03.783905Z] [nf-8f26d043b8cda35227e7b3aefbae0d19-712af-jxsrp] [616_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_011_chr12_0005' to sub-workflow 'CallGenome'
[2026-06-05T14:00:03.783974Z] [nf-8f26d043b8cda35227e7b3aefbae0d19-712af-jxsrp] [616_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_011_chr12_0005' to sub-workflow 'CallGenome'
[2026-06-05T14:00:03.784083Z] [nf-8f26d043b8cda35227e7b3aefbae0d19-712af-jxsrp] [616_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_011_chr12_0006' to sub-workflow 'CallGenome'
[2026-06-05T14:00:03.784151Z] [nf-8f26d043b8cda35227e7b3aefbae0d19-712af-jxsrp] [616_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_011_chr12_0006' to sub-workflow 'CallGenome'
[2026-06-05T14:00:03.784265Z] [nf-8f26d043b8cda35227e7b3aefbae0d19-712af-jxsrp] [616_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_011_chr12_0007' to sub-workflow 'CallGenome'
[2026-06-05T14:00:03.784326Z] [nf-8f26d043b8cda35227e7b3aefbae0d19-712af-jxsrp] [616_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_011_chr12_0007' to sub-workflow 'CallGenome'
[2026-06-05T14:00:03.784436Z] [nf-8f26d043b8cda35227e7b3aefbae0d19-712af-jxsrp] [616_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_011_chr12_0008' to sub-workflow 'CallGenome'
[2026-06-05T14:00:03.784501Z] [nf-8f26d043b8cda35227e7b3aefbae0d19-712af-jxsrp] [616_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_011_chr12_0008' to sub-workflow 'CallGenome'
[2026-06-05T14:00:03.784610Z] [nf-8f26d043b8cda35227e7b3aefbae0d19-712af-jxsrp] [616_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_011_chr12_0009' to sub-workflow 'CallGenome'
[2026-06-05T14:00:03.784675Z] [nf-8f26d043b8cda35227e7b3aefbae0d19-712af-jxsrp] [616_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_011_chr12_0009' to sub-workflow 'CallGenome'
[2026-06-05T14:00:03.784779Z] [nf-8f26d043b8cda35227e7b3aefbae0d19-712af-jxsrp] [616_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_011_chr12_0010' to sub-workflow 'CallGenome'
[2026-06-05T14:00:03.784846Z] [nf-8f26d043b8cda35227e7b3aefbae0d19-712af-jxsrp] [616_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_011_chr12_0010' to sub-workflow 'CallGenome'
[2026-06-05T14:00:03.800979Z] [nf-8f26d043b8cda35227e7b3aefbae0d19-712af-jxsrp] [616_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_011_chr12_0011' to sub-workflow 'CallGenome'
[2026-06-05T14:00:03.801088Z] [nf-8f26d043b8cda35227e7b3aefbae0d19-712af-jxsrp] [616_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_011_chr12_0011' to sub-workflow 'CallGenome'
[2026-06-05T14:00:03.801166Z] [nf-8f26d043b8cda35227e7b3aefbae0d19-712af-jxsrp] [616_1] [WorkflowRunner] Adding command task 'CallGenome+completedAllGenomeSegments' to sub-workflow 'CallGenome'
[2026-06-05T14:00:03.801350Z] [nf-8f26d043b8cda35227e7b3aefbae0d19-712af-jxsrp] [616_1] [WorkflowRunner] Adding command task 'CallGenome+SNV_concat_vcf' to sub-workflow 'CallGenome'
[2026-06-05T14:00:03.801427Z] [nf-8f26d043b8cda35227e7b3aefbae0d19-712af-jxsrp] [616_1] [WorkflowRunner] Adding command task 'CallGenome+SNV_index_vcf' to sub-workflow 'CallGenome'
[2026-06-05T14:00:03.801519Z] [nf-8f26d043b8cda35227e7b3aefbae0d19-712af-jxsrp] [616_1] [WorkflowRunner] Adding command task 'CallGenome+Indel_concat_vcf' to sub-workflow 'CallGenome'
[2026-06-05T14:00:03.801585Z] [nf-8f26d043b8cda35227e7b3aefbae0d19-712af-jxsrp] [616_1] [WorkflowRunner] Adding command task 'CallGenome+Indel_index_vcf' to sub-workflow 'CallGenome'
[2026-06-05T14:00:03.801697Z] [nf-8f26d043b8cda35227e7b3aefbae0d19-712af-jxsrp] [616_1] [WorkflowRunner] Adding command task 'CallGenome+mergeRunStats' to sub-workflow 'CallGenome'
[2026-06-05T14:00:03.801767Z] [nf-8f26d043b8cda35227e7b3aefbae0d19-712af-jxsrp] [616_1] [WorkflowRunner] Adding command task 'CallGenome+removeTmpDir' to sub-workflow 'CallGenome'
[2026-06-05T14:00:03.801812Z] [nf-8f26d043b8cda35227e7b3aefbae0d19-712af-jxsrp] [616_1] [TaskRunner:CallGenome] Finished task specification for sub-workflow
[2026-06-05T14:00:03.804310Z] [nf-8f26d043b8cda35227e7b3aefbae0d19-712af-jxsrp] [616_1] [TaskManager] Completed command task: 'CallGenome+makeTmpDir' launched from sub-workflow 'CallGenome'
[2026-06-05T14:00:03.805228Z] [nf-8f26d043b8cda35227e7b3aefbae0d19-712af-jxsrp] [616_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0010' from sub-workflow 'CallGenome'
[2026-06-05T14:00:03.805647Z] [nf-8f26d043b8cda35227e7b3aefbae0d19-712af-jxsrp] [616_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0008' from sub-workflow 'CallGenome'
[2026-06-05T14:00:03.806268Z] [nf-8f26d043b8cda35227e7b3aefbae0d19-712af-jxsrp] [616_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0011' from sub-workflow 'CallGenome'
[2026-06-05T14:00:03.808639Z] [nf-8f26d043b8cda35227e7b3aefbae0d19-712af-jxsrp] [616_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_011_chr12_0010] Task initiated on local node
[2026-06-05T14:00:03.809064Z] [nf-8f26d043b8cda35227e7b3aefbae0d19-712af-jxsrp] [616_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0005' from sub-workflow 'CallGenome'
[2026-06-05T14:00:03.809689Z] [nf-8f26d043b8cda35227e7b3aefbae0d19-712af-jxsrp] [616_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0011' from sub-workflow 'CallGenome'
[2026-06-05T14:00:03.811993Z] [nf-8f26d043b8cda35227e7b3aefbae0d19-712af-jxsrp] [616_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0009' from sub-workflow 'CallGenome'
[2026-06-05T14:00:03.812624Z] [nf-8f26d043b8cda35227e7b3aefbae0d19-712af-jxsrp] [616_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0008] Task initiated on local node
[2026-06-05T14:00:03.813548Z] [nf-8f26d043b8cda35227e7b3aefbae0d19-712af-jxsrp] [616_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0007' from sub-workflow 'CallGenome'
[2026-06-05T14:00:03.814656Z] [nf-8f26d043b8cda35227e7b3aefbae0d19-712af-jxsrp] [616_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0004' from sub-workflow 'CallGenome'
[2026-06-05T14:00:03.819646Z] [nf-8f26d043b8cda35227e7b3aefbae0d19-712af-jxsrp] [616_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_010_chr11_0011] Task initiated on local node
[2026-06-05T14:00:03.824654Z] [nf-8f26d043b8cda35227e7b3aefbae0d19-712af-jxsrp] [616_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_011_chr12_0005] Task initiated on local node
[2026-06-05T14:00:03.826388Z] [nf-8f26d043b8cda35227e7b3aefbae0d19-712af-jxsrp] [616_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0011] Task initiated on local node
[2026-06-05T14:00:03.827335Z] [nf-8f26d043b8cda35227e7b3aefbae0d19-712af-jxsrp] [616_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_011_chr12_0004] Task initiated on local node
[2026-06-05T14:00:03.830085Z] [nf-8f26d043b8cda35227e7b3aefbae0d19-712af-jxsrp] [616_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_010_chr11_0009] Task initiated on local node
[2026-06-05T14:00:03.831268Z] [nf-8f26d043b8cda35227e7b3aefbae0d19-712af-jxsrp] [616_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_011_chr12_0007] Task initiated on local node
[2026-06-05T14:00:03.930957Z] [nf-8f26d043b8cda35227e7b3aefbae0d19-712af-jxsrp] [616_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0010' launched from sub-workflow 'CallGenome'
[2026-06-05T14:00:03.931713Z] [nf-8f26d043b8cda35227e7b3aefbae0d19-712af-jxsrp] [616_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0008' from sub-workflow 'CallGenome'
[2026-06-05T14:00:03.937290Z] [nf-8f26d043b8cda35227e7b3aefbae0d19-712af-jxsrp] [616_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_011_chr12_0008] Task initiated on local node
[2026-06-05T14:00:05.100317Z] [nf-8f26d043b8cda35227e7b3aefbae0d19-712af-jxsrp] [616_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0007' launched from sub-workflow 'CallGenome'
[2026-06-05T14:00:05.101601Z] [nf-8f26d043b8cda35227e7b3aefbae0d19-712af-jxsrp] [616_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0011' from sub-workflow 'CallGenome'
[2026-06-05T14:00:05.105120Z] [nf-8f26d043b8cda35227e7b3aefbae0d19-712af-jxsrp] [616_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_011_chr12_0011] Task initiated on local node
[2026-06-05T14:00:05.166479Z] [nf-8f26d043b8cda35227e7b3aefbae0d19-712af-jxsrp] [616_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0011' launched from sub-workflow 'CallGenome'
[2026-06-05T14:00:05.167750Z] [nf-8f26d043b8cda35227e7b3aefbae0d19-712af-jxsrp] [616_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0004' from sub-workflow 'CallGenome'
[2026-06-05T14:00:05.171451Z] [nf-8f26d043b8cda35227e7b3aefbae0d19-712af-jxsrp] [616_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_010_chr11_0004] Task initiated on local node
[2026-06-05T14:00:05.282563Z] [nf-8f26d043b8cda35227e7b3aefbae0d19-712af-jxsrp] [616_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0011' launched from sub-workflow 'CallGenome'
[2026-06-05T14:00:05.283791Z] [nf-8f26d043b8cda35227e7b3aefbae0d19-712af-jxsrp] [616_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0006' from sub-workflow 'CallGenome'
[2026-06-05T14:00:05.287226Z] [nf-8f26d043b8cda35227e7b3aefbae0d19-712af-jxsrp] [616_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0006] Task initiated on local node
[2026-06-05T14:00:05.398970Z] [nf-8f26d043b8cda35227e7b3aefbae0d19-712af-jxsrp] [616_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0008' launched from sub-workflow 'CallGenome'
[2026-06-05T14:00:05.400155Z] [nf-8f26d043b8cda35227e7b3aefbae0d19-712af-jxsrp] [616_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0008' from sub-workflow 'CallGenome'
[2026-06-05T14:00:05.403695Z] [nf-8f26d043b8cda35227e7b3aefbae0d19-712af-jxsrp] [616_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_011_chr12_0008] Task initiated on local node
[2026-06-05T14:00:05.464450Z] [nf-8f26d043b8cda35227e7b3aefbae0d19-712af-jxsrp] [616_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0008' launched from sub-workflow 'CallGenome'
[2026-06-05T14:00:05.465545Z] [nf-8f26d043b8cda35227e7b3aefbae0d19-712af-jxsrp] [616_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0002' from sub-workflow 'CallGenome'
[2026-06-05T14:00:05.468741Z] [nf-8f26d043b8cda35227e7b3aefbae0d19-712af-jxsrp] [616_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_011_chr12_0002] Task initiated on local node
[2026-06-05T14:00:05.580111Z] [nf-8f26d043b8cda35227e7b3aefbae0d19-712af-jxsrp] [616_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0011' launched from sub-workflow 'CallGenome'
[2026-06-05T14:00:05.580205Z] [nf-8f26d043b8cda35227e7b3aefbae0d19-712af-jxsrp] [616_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0009' launched from sub-workflow 'CallGenome'
[2026-06-05T14:00:05.581239Z] [nf-8f26d043b8cda35227e7b3aefbae0d19-712af-jxsrp] [616_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0009' from sub-workflow 'CallGenome'
[2026-06-05T14:00:05.581754Z] [nf-8f26d043b8cda35227e7b3aefbae0d19-712af-jxsrp] [616_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0010' from sub-workflow 'CallGenome'
[2026-06-05T14:00:05.585958Z] [nf-8f26d043b8cda35227e7b3aefbae0d19-712af-jxsrp] [616_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_011_chr12_0010] Task initiated on local node
[2026-06-05T14:00:05.586795Z] [nf-8f26d043b8cda35227e7b3aefbae0d19-712af-jxsrp] [616_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_010_chr11_0009] Task initiated on local node
[2026-06-05T14:00:05.646796Z] [nf-8f26d043b8cda35227e7b3aefbae0d19-712af-jxsrp] [616_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0009' launched from sub-workflow 'CallGenome'
[2026-06-05T14:00:05.646886Z] [nf-8f26d043b8cda35227e7b3aefbae0d19-712af-jxsrp] [616_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0005' launched from sub-workflow 'CallGenome'
[2026-06-05T14:00:05.646909Z] [nf-8f26d043b8cda35227e7b3aefbae0d19-712af-jxsrp] [616_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0010' launched from sub-workflow 'CallGenome'
[2026-06-05T14:00:05.647658Z] [nf-8f26d043b8cda35227e7b3aefbae0d19-712af-jxsrp] [616_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0005' from sub-workflow 'CallGenome'
[2026-06-05T14:00:05.647965Z] [nf-8f26d043b8cda35227e7b3aefbae0d19-712af-jxsrp] [616_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0001' from sub-workflow 'CallGenome'
[2026-06-05T14:00:05.648477Z] [nf-8f26d043b8cda35227e7b3aefbae0d19-712af-jxsrp] [616_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0003' from sub-workflow 'CallGenome'
[2026-06-05T14:00:05.652182Z] [nf-8f26d043b8cda35227e7b3aefbae0d19-712af-jxsrp] [616_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_011_chr12_0005] Task initiated on local node
[2026-06-05T14:00:05.654819Z] [nf-8f26d043b8cda35227e7b3aefbae0d19-712af-jxsrp] [616_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_010_chr11_0001] Task initiated on local node
[2026-06-05T14:00:05.655732Z] [nf-8f26d043b8cda35227e7b3aefbae0d19-712af-jxsrp] [616_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0003] Task initiated on local node
[2026-06-05T14:00:05.684022Z] [nf-8f26d043b8cda35227e7b3aefbae0d19-712af-jxsrp] [616_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0005' launched from sub-workflow 'CallGenome'
[2026-06-05T14:00:05.684761Z] [nf-8f26d043b8cda35227e7b3aefbae0d19-712af-jxsrp] [616_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0006' from sub-workflow 'CallGenome'
[2026-06-05T14:00:05.687491Z] [nf-8f26d043b8cda35227e7b3aefbae0d19-712af-jxsrp] [616_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_010_chr11_0006] Task initiated on local node
[2026-06-05T14:00:05.716769Z] [nf-8f26d043b8cda35227e7b3aefbae0d19-712af-jxsrp] [616_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0003' launched from sub-workflow 'CallGenome'
[2026-06-05T14:00:05.717556Z] [nf-8f26d043b8cda35227e7b3aefbae0d19-712af-jxsrp] [616_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0006' from sub-workflow 'CallGenome'
[2026-06-05T14:00:05.720780Z] [nf-8f26d043b8cda35227e7b3aefbae0d19-712af-jxsrp] [616_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_011_chr12_0006] Task initiated on local node
[2026-06-05T14:00:05.831970Z] [nf-8f26d043b8cda35227e7b3aefbae0d19-712af-jxsrp] [616_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0006' launched from sub-workflow 'CallGenome'
[2026-06-05T14:00:05.832751Z] [nf-8f26d043b8cda35227e7b3aefbae0d19-712af-jxsrp] [616_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0006' from sub-workflow 'CallGenome'
[2026-06-05T14:00:05.835673Z] [nf-8f26d043b8cda35227e7b3aefbae0d19-712af-jxsrp] [616_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0006] Task initiated on local node
[2026-06-05T14:00:05.897401Z] [nf-8f26d043b8cda35227e7b3aefbae0d19-712af-jxsrp] [616_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0006' launched from sub-workflow 'CallGenome'
[2026-06-05T14:00:05.898221Z] [nf-8f26d043b8cda35227e7b3aefbae0d19-712af-jxsrp] [616_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0009' from sub-workflow 'CallGenome'
[2026-06-05T14:00:05.902082Z] [nf-8f26d043b8cda35227e7b3aefbae0d19-712af-jxsrp] [616_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_011_chr12_0009] Task initiated on local node
[2026-06-05T14:00:06.163617Z] [nf-8f26d043b8cda35227e7b3aefbae0d19-712af-jxsrp] [616_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0008' launched from sub-workflow 'CallGenome'
[2026-06-05T14:00:06.164438Z] [nf-8f26d043b8cda35227e7b3aefbae0d19-712af-jxsrp] [616_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0008' from sub-workflow 'CallGenome'
[2026-06-05T14:00:06.167656Z] [nf-8f26d043b8cda35227e7b3aefbae0d19-712af-jxsrp] [616_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0008] Task initiated on local node
[2026-06-05T14:00:06.229192Z] [nf-8f26d043b8cda35227e7b3aefbae0d19-712af-jxsrp] [616_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0008' launched from sub-workflow 'CallGenome'
[2026-06-05T14:00:06.229987Z] [nf-8f26d043b8cda35227e7b3aefbae0d19-712af-jxsrp] [616_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0003' from sub-workflow 'CallGenome'
[2026-06-05T14:00:06.237204Z] [nf-8f26d043b8cda35227e7b3aefbae0d19-712af-jxsrp] [616_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_010_chr11_0003] Task initiated on local node
[2026-06-05T14:00:06.344747Z] [nf-8f26d043b8cda35227e7b3aefbae0d19-712af-jxsrp] [616_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0004' launched from sub-workflow 'CallGenome'
[2026-06-05T14:00:06.344836Z] [nf-8f26d043b8cda35227e7b3aefbae0d19-712af-jxsrp] [616_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0004' launched from sub-workflow 'CallGenome'
[2026-06-05T14:00:06.345604Z] [nf-8f26d043b8cda35227e7b3aefbae0d19-712af-jxsrp] [616_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0009' from sub-workflow 'CallGenome'
[2026-06-05T14:00:06.346145Z] [nf-8f26d043b8cda35227e7b3aefbae0d19-712af-jxsrp] [616_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0001' from sub-workflow 'CallGenome'
[2026-06-05T14:00:06.350219Z] [nf-8f26d043b8cda35227e7b3aefbae0d19-712af-jxsrp] [616_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0009] Task initiated on local node
[2026-06-05T14:00:06.351459Z] [nf-8f26d043b8cda35227e7b3aefbae0d19-712af-jxsrp] [616_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_011_chr12_0001] Task initiated on local node
[2026-06-05T14:00:06.712463Z] [nf-8f26d043b8cda35227e7b3aefbae0d19-712af-jxsrp] [616_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0009' launched from sub-workflow 'CallGenome'
[2026-06-05T14:00:06.713212Z] [nf-8f26d043b8cda35227e7b3aefbae0d19-712af-jxsrp] [616_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0011' from sub-workflow 'CallGenome'
[2026-06-05T14:00:06.716614Z] [nf-8f26d043b8cda35227e7b3aefbae0d19-712af-jxsrp] [616_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0011] Task initiated on local node
[2026-06-05T14:00:06.777972Z] [nf-8f26d043b8cda35227e7b3aefbae0d19-712af-jxsrp] [616_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0011' launched from sub-workflow 'CallGenome'
[2026-06-05T14:00:06.778895Z] [nf-8f26d043b8cda35227e7b3aefbae0d19-712af-jxsrp] [616_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0004' from sub-workflow 'CallGenome'
[2026-06-05T14:00:06.782188Z] [nf-8f26d043b8cda35227e7b3aefbae0d19-712af-jxsrp] [616_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_010_chr11_0004] Task initiated on local node
[2026-06-05T14:00:06.843428Z] [nf-8f26d043b8cda35227e7b3aefbae0d19-712af-jxsrp] [616_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0004' launched from sub-workflow 'CallGenome'
[2026-06-05T14:00:06.844239Z] [nf-8f26d043b8cda35227e7b3aefbae0d19-712af-jxsrp] [616_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0000' from sub-workflow 'CallGenome'
[2026-06-05T14:00:06.847484Z] [nf-8f26d043b8cda35227e7b3aefbae0d19-712af-jxsrp] [616_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_010_chr11_0000] Task initiated on local node
[2026-06-05T14:00:07.059321Z] [nf-8f26d043b8cda35227e7b3aefbae0d19-712af-jxsrp] [616_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0006' launched from sub-workflow 'CallGenome'
[2026-06-05T14:00:07.060075Z] [nf-8f26d043b8cda35227e7b3aefbae0d19-712af-jxsrp] [616_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0005' from sub-workflow 'CallGenome'
[2026-06-05T14:00:07.063477Z] [nf-8f26d043b8cda35227e7b3aefbae0d19-712af-jxsrp] [616_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_010_chr11_0005] Task initiated on local node
[2026-06-05T14:00:07.124591Z] [nf-8f26d043b8cda35227e7b3aefbae0d19-712af-jxsrp] [616_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0003' launched from sub-workflow 'CallGenome'
[2026-06-05T14:00:07.125404Z] [nf-8f26d043b8cda35227e7b3aefbae0d19-712af-jxsrp] [616_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0011' from sub-workflow 'CallGenome'
[2026-06-05T14:00:07.128562Z] [nf-8f26d043b8cda35227e7b3aefbae0d19-712af-jxsrp] [616_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_011_chr12_0011] Task initiated on local node
[2026-06-05T14:00:07.141304Z] [nf-8f26d043b8cda35227e7b3aefbae0d19-712af-jxsrp] [616_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0002' launched from sub-workflow 'CallGenome'
[2026-06-05T14:00:07.142030Z] [nf-8f26d043b8cda35227e7b3aefbae0d19-712af-jxsrp] [616_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0006' from sub-workflow 'CallGenome'
[2026-06-05T14:00:07.145264Z] [nf-8f26d043b8cda35227e7b3aefbae0d19-712af-jxsrp] [616_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_011_chr12_0006] Task initiated on local node
[2026-06-05T14:00:07.206528Z] [nf-8f26d043b8cda35227e7b3aefbae0d19-712af-jxsrp] [616_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0011' launched from sub-workflow 'CallGenome'
[2026-06-05T14:00:07.206621Z] [nf-8f26d043b8cda35227e7b3aefbae0d19-712af-jxsrp] [616_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0006' launched from sub-workflow 'CallGenome'
[2026-06-05T14:00:07.207307Z] [nf-8f26d043b8cda35227e7b3aefbae0d19-712af-jxsrp] [616_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0010' from sub-workflow 'CallGenome'
[2026-06-05T14:00:07.207651Z] [nf-8f26d043b8cda35227e7b3aefbae0d19-712af-jxsrp] [616_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0010' from sub-workflow 'CallGenome'
[2026-06-05T14:00:07.211776Z] [nf-8f26d043b8cda35227e7b3aefbae0d19-712af-jxsrp] [616_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0010] Task initiated on local node
[2026-06-05T14:00:07.212469Z] [nf-8f26d043b8cda35227e7b3aefbae0d19-712af-jxsrp] [616_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_010_chr11_0010] Task initiated on local node
[2026-06-05T14:00:07.522514Z] [nf-8f26d043b8cda35227e7b3aefbae0d19-712af-jxsrp] [616_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0001' launched from sub-workflow 'CallGenome'
[2026-06-05T14:00:07.523279Z] [nf-8f26d043b8cda35227e7b3aefbae0d19-712af-jxsrp] [616_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0007' from sub-workflow 'CallGenome'
[2026-06-05T14:00:07.526285Z] [nf-8f26d043b8cda35227e7b3aefbae0d19-712af-jxsrp] [616_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0007] Task initiated on local node
[2026-06-05T14:00:08.239465Z] [nf-8f26d043b8cda35227e7b3aefbae0d19-712af-jxsrp] [616_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0009' launched from sub-workflow 'CallGenome'
[2026-06-05T14:00:08.240264Z] [nf-8f26d043b8cda35227e7b3aefbae0d19-712af-jxsrp] [616_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0007' from sub-workflow 'CallGenome'
[2026-06-05T14:00:08.243877Z] [nf-8f26d043b8cda35227e7b3aefbae0d19-712af-jxsrp] [616_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_010_chr11_0007] Task initiated on local node
[2026-06-05T14:00:08.405471Z] [nf-8f26d043b8cda35227e7b3aefbae0d19-712af-jxsrp] [616_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0001' launched from sub-workflow 'CallGenome'
[2026-06-05T14:00:08.406258Z] [nf-8f26d043b8cda35227e7b3aefbae0d19-712af-jxsrp] [616_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0009' from sub-workflow 'CallGenome'
[2026-06-05T14:00:08.410322Z] [nf-8f26d043b8cda35227e7b3aefbae0d19-712af-jxsrp] [616_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0009] Task initiated on local node
[2026-06-05T14:00:08.471100Z] [nf-8f26d043b8cda35227e7b3aefbae0d19-712af-jxsrp] [616_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0009' launched from sub-workflow 'CallGenome'
[2026-06-05T14:00:08.471844Z] [nf-8f26d043b8cda35227e7b3aefbae0d19-712af-jxsrp] [616_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0003' from sub-workflow 'CallGenome'
[2026-06-05T14:00:08.474930Z] [nf-8f26d043b8cda35227e7b3aefbae0d19-712af-jxsrp] [616_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_011_chr12_0003] Task initiated on local node
[2026-06-05T14:00:08.536624Z] [nf-8f26d043b8cda35227e7b3aefbae0d19-712af-jxsrp] [616_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0006' launched from sub-workflow 'CallGenome'
[2026-06-05T14:00:08.537380Z] [nf-8f26d043b8cda35227e7b3aefbae0d19-712af-jxsrp] [616_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0011' from sub-workflow 'CallGenome'
[2026-06-05T14:00:08.541350Z] [nf-8f26d043b8cda35227e7b3aefbae0d19-712af-jxsrp] [616_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_010_chr11_0011] Task initiated on local node
[2026-06-05T14:00:08.602001Z] [nf-8f26d043b8cda35227e7b3aefbae0d19-712af-jxsrp] [616_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0011' launched from sub-workflow 'CallGenome'
[2026-06-05T14:00:08.602745Z] [nf-8f26d043b8cda35227e7b3aefbae0d19-712af-jxsrp] [616_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0002' from sub-workflow 'CallGenome'
[2026-06-05T14:00:08.606648Z] [nf-8f26d043b8cda35227e7b3aefbae0d19-712af-jxsrp] [616_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_010_chr11_0002] Task initiated on local node
[2026-06-05T14:00:08.918525Z] [nf-8f26d043b8cda35227e7b3aefbae0d19-712af-jxsrp] [616_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0007' launched from sub-workflow 'CallGenome'
[2026-06-05T14:00:08.919816Z] [nf-8f26d043b8cda35227e7b3aefbae0d19-712af-jxsrp] [616_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0007' from sub-workflow 'CallGenome'
[2026-06-05T14:00:08.923328Z] [nf-8f26d043b8cda35227e7b3aefbae0d19-712af-jxsrp] [616_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0007] Task initiated on local node
[2026-06-05T14:00:08.984774Z] [nf-8f26d043b8cda35227e7b3aefbae0d19-712af-jxsrp] [616_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0007' launched from sub-workflow 'CallGenome'
[2026-06-05T14:00:08.985763Z] [nf-8f26d043b8cda35227e7b3aefbae0d19-712af-jxsrp] [616_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0001' from sub-workflow 'CallGenome'
[2026-06-05T14:00:08.989446Z] [nf-8f26d043b8cda35227e7b3aefbae0d19-712af-jxsrp] [616_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0001] Task initiated on local node
[2026-06-05T14:00:09.050614Z] [nf-8f26d043b8cda35227e7b3aefbae0d19-712af-jxsrp] [616_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0001' launched from sub-workflow 'CallGenome'
[2026-06-05T14:00:09.051695Z] [nf-8f26d043b8cda35227e7b3aefbae0d19-712af-jxsrp] [616_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0001' from sub-workflow 'CallGenome'
[2026-06-05T14:00:09.055886Z] [nf-8f26d043b8cda35227e7b3aefbae0d19-712af-jxsrp] [616_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0001] Task initiated on local node
[2026-06-05T14:00:09.116992Z] [nf-8f26d043b8cda35227e7b3aefbae0d19-712af-jxsrp] [616_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0001' launched from sub-workflow 'CallGenome'
[2026-06-05T14:00:09.117961Z] [nf-8f26d043b8cda35227e7b3aefbae0d19-712af-jxsrp] [616_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0000' from sub-workflow 'CallGenome'
[2026-06-05T14:00:09.122414Z] [nf-8f26d043b8cda35227e7b3aefbae0d19-712af-jxsrp] [616_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0000] Task initiated on local node
[2026-06-05T14:00:09.233462Z] [nf-8f26d043b8cda35227e7b3aefbae0d19-712af-jxsrp] [616_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0000' launched from sub-workflow 'CallGenome'
[2026-06-05T14:00:09.234416Z] [nf-8f26d043b8cda35227e7b3aefbae0d19-712af-jxsrp] [616_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0004' from sub-workflow 'CallGenome'
[2026-06-05T14:00:09.238450Z] [nf-8f26d043b8cda35227e7b3aefbae0d19-712af-jxsrp] [616_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_011_chr12_0004] Task initiated on local node
[2026-06-05T14:00:09.299604Z] [nf-8f26d043b8cda35227e7b3aefbae0d19-712af-jxsrp] [616_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0004' launched from sub-workflow 'CallGenome'
[2026-06-05T14:00:09.300588Z] [nf-8f26d043b8cda35227e7b3aefbae0d19-712af-jxsrp] [616_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0003' from sub-workflow 'CallGenome'
[2026-06-05T14:00:09.304520Z] [nf-8f26d043b8cda35227e7b3aefbae0d19-712af-jxsrp] [616_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_010_chr11_0003] Task initiated on local node
[2026-06-05T14:00:09.317236Z] [nf-8f26d043b8cda35227e7b3aefbae0d19-712af-jxsrp] [616_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0010' launched from sub-workflow 'CallGenome'
[2026-06-05T14:00:09.318068Z] [nf-8f26d043b8cda35227e7b3aefbae0d19-712af-jxsrp] [616_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0008' from sub-workflow 'CallGenome'
[2026-06-05T14:00:09.321738Z] [nf-8f26d043b8cda35227e7b3aefbae0d19-712af-jxsrp] [616_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0010' launched from sub-workflow 'CallGenome'
[2026-06-05T14:00:09.322795Z] [nf-8f26d043b8cda35227e7b3aefbae0d19-712af-jxsrp] [616_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0003' from sub-workflow 'CallGenome'
[2026-06-05T14:00:09.323329Z] [nf-8f26d043b8cda35227e7b3aefbae0d19-712af-jxsrp] [616_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_010_chr11_0008] Task initiated on local node
[2026-06-05T14:00:09.326899Z] [nf-8f26d043b8cda35227e7b3aefbae0d19-712af-jxsrp] [616_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0003] Task initiated on local node
[2026-06-05T14:00:09.355528Z] [nf-8f26d043b8cda35227e7b3aefbae0d19-712af-jxsrp] [616_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0003' launched from sub-workflow 'CallGenome'
[2026-06-05T14:00:09.356440Z] [nf-8f26d043b8cda35227e7b3aefbae0d19-712af-jxsrp] [616_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0010' from sub-workflow 'CallGenome'
[2026-06-05T14:00:09.360615Z] [nf-8f26d043b8cda35227e7b3aefbae0d19-712af-jxsrp] [616_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_010_chr11_0010] Task initiated on local node
[2026-06-05T14:00:09.361309Z] [nf-8f26d043b8cda35227e7b3aefbae0d19-712af-jxsrp] [616_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0003' launched from sub-workflow 'CallGenome'
[2026-06-05T14:00:09.362380Z] [nf-8f26d043b8cda35227e7b3aefbae0d19-712af-jxsrp] [616_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0002' from sub-workflow 'CallGenome'
[2026-06-05T14:00:09.365576Z] [nf-8f26d043b8cda35227e7b3aefbae0d19-712af-jxsrp] [616_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_011_chr12_0002] Task initiated on local node
[2026-06-05T14:00:09.426789Z] [nf-8f26d043b8cda35227e7b3aefbae0d19-712af-jxsrp] [616_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0002' launched from sub-workflow 'CallGenome'
[2026-06-05T14:00:09.426909Z] [nf-8f26d043b8cda35227e7b3aefbae0d19-712af-jxsrp] [616_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0010' launched from sub-workflow 'CallGenome'
[2026-06-05T14:00:09.427693Z] [nf-8f26d043b8cda35227e7b3aefbae0d19-712af-jxsrp] [616_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0001' from sub-workflow 'CallGenome'
[2026-06-05T14:00:09.428331Z] [nf-8f26d043b8cda35227e7b3aefbae0d19-712af-jxsrp] [616_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0009' from sub-workflow 'CallGenome'
[2026-06-05T14:00:09.433431Z] [nf-8f26d043b8cda35227e7b3aefbae0d19-712af-jxsrp] [616_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_011_chr12_0001] Task initiated on local node
[2026-06-05T14:00:09.434403Z] [nf-8f26d043b8cda35227e7b3aefbae0d19-712af-jxsrp] [616_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_011_chr12_0009] Task initiated on local node
[2026-06-05T14:00:09.496457Z] [nf-8f26d043b8cda35227e7b3aefbae0d19-712af-jxsrp] [616_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0001' launched from sub-workflow 'CallGenome'
[2026-06-05T14:00:09.496582Z] [nf-8f26d043b8cda35227e7b3aefbae0d19-712af-jxsrp] [616_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0009' launched from sub-workflow 'CallGenome'
[2026-06-05T14:00:09.497388Z] [nf-8f26d043b8cda35227e7b3aefbae0d19-712af-jxsrp] [616_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0002' from sub-workflow 'CallGenome'
[2026-06-05T14:00:09.497939Z] [nf-8f26d043b8cda35227e7b3aefbae0d19-712af-jxsrp] [616_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0007' from sub-workflow 'CallGenome'
[2026-06-05T14:00:09.502439Z] [nf-8f26d043b8cda35227e7b3aefbae0d19-712af-jxsrp] [616_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_011_chr12_0007] Task initiated on local node
[2026-06-05T14:00:09.503734Z] [nf-8f26d043b8cda35227e7b3aefbae0d19-712af-jxsrp] [616_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0002] Task initiated on local node
[2026-06-05T14:00:09.563413Z] [nf-8f26d043b8cda35227e7b3aefbae0d19-712af-jxsrp] [616_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0007' launched from sub-workflow 'CallGenome'
[2026-06-05T14:00:09.563513Z] [nf-8f26d043b8cda35227e7b3aefbae0d19-712af-jxsrp] [616_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0002' launched from sub-workflow 'CallGenome'
[2026-06-05T14:00:09.564139Z] [nf-8f26d043b8cda35227e7b3aefbae0d19-712af-jxsrp] [616_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0002' from sub-workflow 'CallGenome'
[2026-06-05T14:00:09.564655Z] [nf-8f26d043b8cda35227e7b3aefbae0d19-712af-jxsrp] [616_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0005' from sub-workflow 'CallGenome'
[2026-06-05T14:00:09.569974Z] [nf-8f26d043b8cda35227e7b3aefbae0d19-712af-jxsrp] [616_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0002] Task initiated on local node
[2026-06-05T14:00:09.571500Z] [nf-8f26d043b8cda35227e7b3aefbae0d19-712af-jxsrp] [616_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0005] Task initiated on local node
[2026-06-05T14:00:09.632299Z] [nf-8f26d043b8cda35227e7b3aefbae0d19-712af-jxsrp] [616_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0002' launched from sub-workflow 'CallGenome'
[2026-06-05T14:00:09.632404Z] [nf-8f26d043b8cda35227e7b3aefbae0d19-712af-jxsrp] [616_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0005' launched from sub-workflow 'CallGenome'
[2026-06-05T14:00:09.632432Z] [nf-8f26d043b8cda35227e7b3aefbae0d19-712af-jxsrp] [616_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0003' launched from sub-workflow 'CallGenome'
[2026-06-05T14:00:09.632458Z] [nf-8f26d043b8cda35227e7b3aefbae0d19-712af-jxsrp] [616_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0007' launched from sub-workflow 'CallGenome'
[2026-06-05T14:00:09.633200Z] [nf-8f26d043b8cda35227e7b3aefbae0d19-712af-jxsrp] [616_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0007' from sub-workflow 'CallGenome'
[2026-06-05T14:00:09.633676Z] [nf-8f26d043b8cda35227e7b3aefbae0d19-712af-jxsrp] [616_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0003' from sub-workflow 'CallGenome'
[2026-06-05T14:00:09.634035Z] [nf-8f26d043b8cda35227e7b3aefbae0d19-712af-jxsrp] [616_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0005' from sub-workflow 'CallGenome'
[2026-06-05T14:00:09.634785Z] [nf-8f26d043b8cda35227e7b3aefbae0d19-712af-jxsrp] [616_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0006' from sub-workflow 'CallGenome'
[2026-06-05T14:00:09.639340Z] [nf-8f26d043b8cda35227e7b3aefbae0d19-712af-jxsrp] [616_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_011_chr12_0003] Task initiated on local node
[2026-06-05T14:00:09.642298Z] [nf-8f26d043b8cda35227e7b3aefbae0d19-712af-jxsrp] [616_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0005] Task initiated on local node
[2026-06-05T14:00:09.642528Z] [nf-8f26d043b8cda35227e7b3aefbae0d19-712af-jxsrp] [616_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_010_chr11_0007] Task initiated on local node
[2026-06-05T14:00:09.643564Z] [nf-8f26d043b8cda35227e7b3aefbae0d19-712af-jxsrp] [616_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_010_chr11_0006] Task initiated on local node
[2026-06-05T14:00:09.702687Z] [nf-8f26d043b8cda35227e7b3aefbae0d19-712af-jxsrp] [616_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0003' launched from sub-workflow 'CallGenome'
[2026-06-05T14:00:09.702782Z] [nf-8f26d043b8cda35227e7b3aefbae0d19-712af-jxsrp] [616_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0005' launched from sub-workflow 'CallGenome'
[2026-06-05T14:00:09.702819Z] [nf-8f26d043b8cda35227e7b3aefbae0d19-712af-jxsrp] [616_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0006' launched from sub-workflow 'CallGenome'
[2026-06-05T14:00:09.702844Z] [nf-8f26d043b8cda35227e7b3aefbae0d19-712af-jxsrp] [616_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0007' launched from sub-workflow 'CallGenome'
[2026-06-05T14:00:09.703785Z] [nf-8f26d043b8cda35227e7b3aefbae0d19-712af-jxsrp] [616_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0004' from sub-workflow 'CallGenome'
[2026-06-05T14:00:09.704287Z] [nf-8f26d043b8cda35227e7b3aefbae0d19-712af-jxsrp] [616_1] [TaskManager] Launching command task: 'CallGenome+fixVcfHeader_chromId_009_chr10_0000' from sub-workflow 'CallGenome'
[2026-06-05T14:00:09.704656Z] [nf-8f26d043b8cda35227e7b3aefbae0d19-712af-jxsrp] [616_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0001' from sub-workflow 'CallGenome'
[2026-06-05T14:00:09.705575Z] [nf-8f26d043b8cda35227e7b3aefbae0d19-712af-jxsrp] [616_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0010' from sub-workflow 'CallGenome'
[2026-06-05T14:00:09.712143Z] [nf-8f26d043b8cda35227e7b3aefbae0d19-712af-jxsrp] [616_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_010_chr11_0001] Task initiated on local node
[2026-06-05T14:00:09.712810Z] [nf-8f26d043b8cda35227e7b3aefbae0d19-712af-jxsrp] [616_1] [TaskRunner:CallGenome+fixVcfHeader_chromId_009_chr10_0000] Task initiated on local node
[2026-06-05T14:00:09.714080Z] [nf-8f26d043b8cda35227e7b3aefbae0d19-712af-jxsrp] [616_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0010] Task initiated on local node
[2026-06-05T14:00:09.715474Z] [nf-8f26d043b8cda35227e7b3aefbae0d19-712af-jxsrp] [616_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0004] Task initiated on local node
[2026-06-05T14:00:09.772423Z] [nf-8f26d043b8cda35227e7b3aefbae0d19-712af-jxsrp] [616_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0001' launched from sub-workflow 'CallGenome'
[2026-06-05T14:00:09.772513Z] [nf-8f26d043b8cda35227e7b3aefbae0d19-712af-jxsrp] [616_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0010' launched from sub-workflow 'CallGenome'
[2026-06-05T14:00:09.772541Z] [nf-8f26d043b8cda35227e7b3aefbae0d19-712af-jxsrp] [616_1] [TaskManager] Completed command task: 'CallGenome+fixVcfHeader_chromId_009_chr10_0000' launched from sub-workflow 'CallGenome'
[2026-06-05T14:00:09.773214Z] [nf-8f26d043b8cda35227e7b3aefbae0d19-712af-jxsrp] [616_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0000' from sub-workflow 'CallGenome'
[2026-06-05T14:00:09.773910Z] [nf-8f26d043b8cda35227e7b3aefbae0d19-712af-jxsrp] [616_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0000' from sub-workflow 'CallGenome'
[2026-06-05T14:00:09.774526Z] [nf-8f26d043b8cda35227e7b3aefbae0d19-712af-jxsrp] [616_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0004' launched from sub-workflow 'CallGenome'
[2026-06-05T14:00:09.775803Z] [nf-8f26d043b8cda35227e7b3aefbae0d19-712af-jxsrp] [616_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0004' from sub-workflow 'CallGenome'
[2026-06-05T14:00:09.780913Z] [nf-8f26d043b8cda35227e7b3aefbae0d19-712af-jxsrp] [616_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0000] Task initiated on local node
[2026-06-05T14:00:09.782471Z] [nf-8f26d043b8cda35227e7b3aefbae0d19-712af-jxsrp] [616_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0004] Task initiated on local node
[2026-06-05T14:00:09.783496Z] [nf-8f26d043b8cda35227e7b3aefbae0d19-712af-jxsrp] [616_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_011_chr12_0000] Task initiated on local node
[2026-06-05T14:00:09.843293Z] [nf-8f26d043b8cda35227e7b3aefbae0d19-712af-jxsrp] [616_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0004' launched from sub-workflow 'CallGenome'
[2026-06-05T14:00:09.843393Z] [nf-8f26d043b8cda35227e7b3aefbae0d19-712af-jxsrp] [616_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0000' launched from sub-workflow 'CallGenome'
[2026-06-05T14:00:10.057955Z] [nf-8f26d043b8cda35227e7b3aefbae0d19-712af-jxsrp] [616_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0000' launched from sub-workflow 'CallGenome'
[2026-06-05T14:00:10.058718Z] [nf-8f26d043b8cda35227e7b3aefbae0d19-712af-jxsrp] [616_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0000' from sub-workflow 'CallGenome'
[2026-06-05T14:00:10.062374Z] [nf-8f26d043b8cda35227e7b3aefbae0d19-712af-jxsrp] [616_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_010_chr11_0000] Task initiated on local node
[2026-06-05T14:00:10.123297Z] [nf-8f26d043b8cda35227e7b3aefbae0d19-712af-jxsrp] [616_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0000' launched from sub-workflow 'CallGenome'
[2026-06-05T14:00:10.139388Z] [nf-8f26d043b8cda35227e7b3aefbae0d19-712af-jxsrp] [616_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0002' launched from sub-workflow 'CallGenome'
[2026-06-05T14:00:10.140049Z] [nf-8f26d043b8cda35227e7b3aefbae0d19-712af-jxsrp] [616_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0002' from sub-workflow 'CallGenome'
[2026-06-05T14:00:10.143734Z] [nf-8f26d043b8cda35227e7b3aefbae0d19-712af-jxsrp] [616_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_010_chr11_0002] Task initiated on local node
[2026-06-05T14:00:10.204946Z] [nf-8f26d043b8cda35227e7b3aefbae0d19-712af-jxsrp] [616_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0002' launched from sub-workflow 'CallGenome'
[2026-06-05T14:00:10.520000Z] [nf-8f26d043b8cda35227e7b3aefbae0d19-712af-jxsrp] [616_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0005' launched from sub-workflow 'CallGenome'
[2026-06-05T14:00:10.520610Z] [nf-8f26d043b8cda35227e7b3aefbae0d19-712af-jxsrp] [616_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0005' from sub-workflow 'CallGenome'
[2026-06-05T14:00:10.524515Z] [nf-8f26d043b8cda35227e7b3aefbae0d19-712af-jxsrp] [616_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_010_chr11_0005] Task initiated on local node
[2026-06-05T14:00:10.585830Z] [nf-8f26d043b8cda35227e7b3aefbae0d19-712af-jxsrp] [616_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0005' launched from sub-workflow 'CallGenome'
[2026-06-05T14:00:10.617975Z] [nf-8f26d043b8cda35227e7b3aefbae0d19-712af-jxsrp] [616_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0008' launched from sub-workflow 'CallGenome'
[2026-06-05T14:00:10.618663Z] [nf-8f26d043b8cda35227e7b3aefbae0d19-712af-jxsrp] [616_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0008' from sub-workflow 'CallGenome'
[2026-06-05T14:00:10.623026Z] [nf-8f26d043b8cda35227e7b3aefbae0d19-712af-jxsrp] [616_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_010_chr11_0008] Task initiated on local node
[2026-06-05T14:00:10.684052Z] [nf-8f26d043b8cda35227e7b3aefbae0d19-712af-jxsrp] [616_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0008' launched from sub-workflow 'CallGenome'
[2026-06-05T14:00:12.754812Z] [nf-8f26d043b8cda35227e7b3aefbae0d19-712af-jxsrp] [616_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0000' launched from sub-workflow 'CallGenome'
[2026-06-05T14:00:12.755329Z] [nf-8f26d043b8cda35227e7b3aefbae0d19-712af-jxsrp] [616_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0000' from sub-workflow 'CallGenome'
[2026-06-05T14:00:12.759034Z] [nf-8f26d043b8cda35227e7b3aefbae0d19-712af-jxsrp] [616_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_011_chr12_0000] Task initiated on local node
[2026-06-05T14:00:12.820261Z] [nf-8f26d043b8cda35227e7b3aefbae0d19-712af-jxsrp] [616_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0000' launched from sub-workflow 'CallGenome'
[2026-06-05T14:00:12.820601Z] [nf-8f26d043b8cda35227e7b3aefbae0d19-712af-jxsrp] [616_1] [TaskManager] Completed command task: 'CallGenome+completedAllGenomeSegments' launched from sub-workflow 'CallGenome'
[2026-06-05T14:00:12.820796Z] [nf-8f26d043b8cda35227e7b3aefbae0d19-712af-jxsrp] [616_1] [TaskManager] Launching command task: 'CallGenome+SNV_concat_vcf' from sub-workflow 'CallGenome'
[2026-06-05T14:00:12.821118Z] [nf-8f26d043b8cda35227e7b3aefbae0d19-712af-jxsrp] [616_1] [TaskManager] Launching command task: 'CallGenome+Indel_concat_vcf' from sub-workflow 'CallGenome'
[2026-06-05T14:00:12.822303Z] [nf-8f26d043b8cda35227e7b3aefbae0d19-712af-jxsrp] [616_1] [TaskManager] Launching command task: 'CallGenome+mergeRunStats' from sub-workflow 'CallGenome'
[2026-06-05T14:00:12.826927Z] [nf-8f26d043b8cda35227e7b3aefbae0d19-712af-jxsrp] [616_1] [TaskRunner:CallGenome+SNV_concat_vcf] Task initiated on local node
[2026-06-05T14:00:12.831023Z] [nf-8f26d043b8cda35227e7b3aefbae0d19-712af-jxsrp] [616_1] [TaskRunner:CallGenome+mergeRunStats] Task initiated on local node
[2026-06-05T14:00:12.832424Z] [nf-8f26d043b8cda35227e7b3aefbae0d19-712af-jxsrp] [616_1] [TaskRunner:CallGenome+Indel_concat_vcf] Task initiated on local node
[2026-06-05T14:00:12.889874Z] [nf-8f26d043b8cda35227e7b3aefbae0d19-712af-jxsrp] [616_1] [TaskManager] Completed command task: 'CallGenome+SNV_concat_vcf' launched from sub-workflow 'CallGenome'
[2026-06-05T14:00:12.889969Z] [nf-8f26d043b8cda35227e7b3aefbae0d19-712af-jxsrp] [616_1] [TaskManager] Completed command task: 'CallGenome+Indel_concat_vcf' launched from sub-workflow 'CallGenome'
[2026-06-05T14:00:12.889996Z] [nf-8f26d043b8cda35227e7b3aefbae0d19-712af-jxsrp] [616_1] [TaskManager] Completed command task: 'CallGenome+mergeRunStats' launched from sub-workflow 'CallGenome'
[2026-06-05T14:00:12.890278Z] [nf-8f26d043b8cda35227e7b3aefbae0d19-712af-jxsrp] [616_1] [TaskManager] Launching command task: 'CallGenome+Indel_index_vcf' from sub-workflow 'CallGenome'
[2026-06-05T14:00:12.890692Z] [nf-8f26d043b8cda35227e7b3aefbae0d19-712af-jxsrp] [616_1] [TaskManager] Launching command task: 'CallGenome+SNV_index_vcf' from sub-workflow 'CallGenome'
[2026-06-05T14:00:12.894998Z] [nf-8f26d043b8cda35227e7b3aefbae0d19-712af-jxsrp] [616_1] [TaskRunner:CallGenome+Indel_index_vcf] Task initiated on local node
[2026-06-05T14:00:12.896041Z] [nf-8f26d043b8cda35227e7b3aefbae0d19-712af-jxsrp] [616_1] [TaskRunner:CallGenome+SNV_index_vcf] Task initiated on local node
[2026-06-05T14:00:12.958067Z] [nf-8f26d043b8cda35227e7b3aefbae0d19-712af-jxsrp] [616_1] [TaskManager] Completed command task: 'CallGenome+Indel_index_vcf' launched from sub-workflow 'CallGenome'
[2026-06-05T14:00:12.958158Z] [nf-8f26d043b8cda35227e7b3aefbae0d19-712af-jxsrp] [616_1] [TaskManager] Completed command task: 'CallGenome+SNV_index_vcf' launched from sub-workflow 'CallGenome'
[2026-06-05T14:00:12.958416Z] [nf-8f26d043b8cda35227e7b3aefbae0d19-712af-jxsrp] [616_1] [TaskManager] Launching command task: 'CallGenome+removeTmpDir' from sub-workflow 'CallGenome'
[2026-06-05T14:00:12.962152Z] [nf-8f26d043b8cda35227e7b3aefbae0d19-712af-jxsrp] [616_1] [TaskRunner:CallGenome+removeTmpDir] Task initiated on local node
[2026-06-05T14:00:13.023325Z] [nf-8f26d043b8cda35227e7b3aefbae0d19-712af-jxsrp] [616_1] [TaskManager] Completed command task: 'CallGenome+removeTmpDir' launched from sub-workflow 'CallGenome'
[2026-06-05T14:00:14.341506Z] [nf-8f26d043b8cda35227e7b3aefbae0d19-712af-jxsrp] [616_1] [TaskManager] Completed sub-workflow task: 'CallGenome' launched from master workflow
[2026-06-05T14:00:22.650911Z] [nf-8f26d043b8cda35227e7b3aefbae0d19-712af-jxsrp] [616_1] [WorkflowRunner] Strelka somatic workflow successfully completed.
[2026-06-05T14:00:22.650911Z] [nf-8f26d043b8cda35227e7b3aefbae0d19-712af-jxsrp] [616_1] [WorkflowRunner] 
[2026-06-05T14:00:22.650911Z] [nf-8f26d043b8cda35227e7b3aefbae0d19-712af-jxsrp] [616_1] [WorkflowRunner] 	workflow version: 2.9.10
[2026-06-05T14:00:22.650988Z] [nf-8f26d043b8cda35227e7b3aefbae0d19-712af-jxsrp] [616_1] [WorkflowRunner] 
[2026-06-05T14:00:22.651000Z] [nf-8f26d043b8cda35227e7b3aefbae0d19-712af-jxsrp] [616_1] [WorkflowRunner] Workflow successfully completed all tasks
[2026-06-05T14:00:22.651008Z] [nf-8f26d043b8cda35227e7b3aefbae0d19-712af-jxsrp] [616_1] [WorkflowRunner] Elapsed time for full workflow: 18 sec