cmdline: /opt/conda/share/sentieon-202308.03-3/libexec/driver -r Homo_sapiens_assembly38.fasta --algo TNfilter --tumor_sample HCC1395_tumor --normal_sample reference-NA12878 --max_event_count 5 -v positive_somatic_control_1.tnseq.vcf.gz --contamination positive_somatic_control_1.tnseq.contamination_data.tsv --tumor_segments positive_somatic_control_1.tnseq.segments --orientation_priors positive_somatic_control_1.tnseq.orientation_data.tsv positive_somatic_control_1.tnseq.filtered.vcf.gz
This software is licensed to bgold@natera.com by Sentieon Inc.
progress 5% @chr1:168000001, elapsed 0.0s, est remaining 0.9s, peak mem 220MB, user 0.2s, sys 2.0s, output queue size 109
progress 10% @chr2:46000001, elapsed 0.1s, est remaining 0.8s, peak mem 220MB, user 0.4s, sys 4.5s, output queue size 268
progress 15% @chr2:228000001, elapsed 0.1s, est remaining 0.7s, peak mem 220MB, user 0.6s, sys 6.7s, output queue size 273
progress 20% @chr3:155000001, elapsed 0.2s, est remaining 0.6s, peak mem 220MB, user 1.0s, sys 9.2s, output queue size 435
progress 25% @chr4:117000001, elapsed 0.2s, est remaining 0.6s, peak mem 220MB, user 1.2s, sys 11.2s, output queue size 596
progress 30% @chr5:94000001, elapsed 0.2s, est remaining 0.6s, peak mem 220MB, user 1.4s, sys 13.6s, output queue size 757
progress 35% @chr6:92000001, elapsed 0.3s, est remaining 0.5s, peak mem 220MB, user 1.6s, sys 15.9s, output queue size 918
progress 40% @chr7:79000001, elapsed 0.3s, est remaining 0.5s, peak mem 220MB, user 1.9s, sys 18.5s, output queue size 1079
progress 45% @chr8:89000001, elapsed 0.3s, est remaining 0.4s, peak mem 220MB, user 2.1s, sys 21.0s, output queue size 1241
progress 50% @chr9:76000001, elapsed 0.4s, est remaining 0.4s, peak mem 220MB, user 2.3s, sys 23.5s, output queue size 1403
progress 55% @chr10:100000001, elapsed 0.4s, est remaining 0.3s, peak mem 220MB, user 2.6s, sys 26.1s, output queue size 1564
progress 60% @chr11:112000001, elapsed 0.5s, est remaining 0.3s, peak mem 220MB, user 2.9s, sys 28.2s, output queue size 108
progress 65% @chr12:24000001, elapsed 0.5s, est remaining 0.3s, peak mem 220MB, user 3.2s, sys 30.6s, output queue size 270
progress 70% @chr14:87000001, elapsed 0.5s, est remaining 0.2s, peak mem 220MB, user 3.5s, sys 32.9s, output queue size 432
progress 75% @chr16:5000001, elapsed 0.6s, est remaining 0.2s, peak mem 220MB, user 3.8s, sys 35.3s, output queue size 593
progress 80% @chr18:1000001, elapsed 0.6s, est remaining 0.2s, peak mem 220MB, user 4.2s, sys 37.7s, output queue size 755
progress 85% @chr20:41000001, elapsed 0.6s, est remaining 0.1s, peak mem 221MB, user 4.5s, sys 40.2s, output queue size 918
progress 90% @chr22:25000001, elapsed 0.7s, est remaining 0.1s, peak mem 221MB, user 4.8s, sys 42.4s, output queue size 1079
progress 95% @chrX:146000001, elapsed 0.7s, est remaining 0.0s, peak mem 221MB, user 5.2s, sys 44.8s, output queue size 1306
progress 100% @HLA-DRB1*08:03:02:1, elapsed 0.9s, est remaining 0.0s, peak mem 222MB, user 5.4s, sys 53.2s, output queue size 4665
sw version: sentieon-genomics-202308.03
os version: Linux 6.12.88
cpu vendor: GenuineIntel
signature: 00050657
features: bfebfbff 7ffefbff
extended: d39ff7eb 00000818
amd bits: 2c100800 00000121
brand: Intel(R) Xeon(R) Platinum 8259CL CPU @ 2.50GHz
threads: 96 max 96
algo: TNfilter
license: sentieon:TNhaplotyper=96
input file size: 50711
output file size: 43806
reads: 0
contig: 3367 intervals 3217346917 bases
"learn_filter": 513 calls 0.004 user 0.001 sys 0.022 real
"predict_filter": 171 calls 0.011 user 0.011 sys 0.054 real
advance: 3219322 calls 0.733 user 20.623 sys 24.908 real
done: 1 calls 0.000 user 0.000 sys 0.004 real
execute: 1 calls 0.006 user 0.002 sys 0.975 real
fetch_ref: 448 calls 0.017 user 0.053 sys 0.525 real
idle: 19769 calls 0.423 user 0.105 sys 139.047 real
init: 1 calls 0.270 user 0.061 sys 0.418 real
overall: 233947136 mem 6.837 user 54.928 sys 2.412 real