Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/fb/2a76610d309579f5160531f647088a/counts_1.parquet
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/fb/2a76610d309579f5160531f647088a/ploidy_1.parquet
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/5f/7b21e6b3d5296dfad38952efcc4e3e/clustered_panel.csv
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/fb/2a76610d309579f5160531f647088a/sample_metrics_1.parquet
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/a8/2bae42be34dab928e27c36502eadca/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/a8/2bae42be34dab928e27c36502eadca/.command.run
==> STAGING COMPLETE (6 inputs)

mkdir -p failed for path /.config/matplotlib: [Errno 13] Permission denied: '/.config'
Matplotlib created a temporary cache directory at /tmp/matplotlib-09p7myx8 because there was an issue with the default path (/.config/matplotlib); it is highly recommended to set the MPLCONFIGDIR environment variable to a writable directory, in particular to speed up the import of Matplotlib and to better support multiprocessing.
2026-06-05 14:05:24,127 - cnv_pipe.batch.jax_config - INFO - Setting JAX backend to 'cpu'
2026-06-05 14:05:25,023 - cnv_pipe.batch.run_model - INFO - JAX devices = [CpuDevice(id=0)]
2026-06-05 14:05:25,205 - cnv_pipe.batch.run_model - INFO - Loading counts from counts_1.parquet
2026-06-05 14:05:26,250 - cnv_pipe.batch.run_model - INFO - Loaded data with 4 samples
2026-06-05 14:05:26,422 - cnv_pipe.batch.run_model - INFO - Processing cluster 965 with 167 probes
2026-06-05 14:05:26,809 - cnv_pipe.batch.run_model.cluster965 - INFO - Child process started for cluster 965 with 167 probes
2026-06-05 14:06:20,021 - cnv_pipe.batch.run_model.cluster965 - INFO - Child process finished cluster 965. Wrote cluster_965_samples.csv and cluster_965_params.csv
2026-06-05 14:06:20,023 - cnv_pipe.batch.run_model - INFO - Cluster 965 finished in 53.60 seconds. Status: SUCCESS