[2026-06-05T14:00:08.460370Z] [nf-17e7f21733035d30309e44d494fc6b09-0904e-mxf8q] [623_1] [WorkflowRunner] Initiating pyFlow run [2026-06-05T14:00:08.461414Z] [nf-17e7f21733035d30309e44d494fc6b09-0904e-mxf8q] [623_1] [WorkflowRunner] pyFlowClientWorkflowClass: StrelkaSomaticWorkflow [2026-06-05T14:00:08.461425Z] [nf-17e7f21733035d30309e44d494fc6b09-0904e-mxf8q] [623_1] [WorkflowRunner] pyFlowVersion: 1.1.20 [2026-06-05T14:00:08.461429Z] [nf-17e7f21733035d30309e44d494fc6b09-0904e-mxf8q] [623_1] [WorkflowRunner] pythonVersion: 2.7.15.final.0 [2026-06-05T14:00:08.461434Z] [nf-17e7f21733035d30309e44d494fc6b09-0904e-mxf8q] [623_1] [WorkflowRunner] WorkingDir: '/tmp/nxf.XXXXJdpCfB' [2026-06-05T14:00:08.461438Z] [nf-17e7f21733035d30309e44d494fc6b09-0904e-mxf8q] [623_1] [WorkflowRunner] ProcessCmdLine: '/var/tmp/strelka/runWorkflow.py -m local -j 8' [2026-06-05T14:00:08.461444Z] [nf-17e7f21733035d30309e44d494fc6b09-0904e-mxf8q] [623_1] [WorkflowRunner] [RunParameters] mode: local [2026-06-05T14:00:08.461448Z] [nf-17e7f21733035d30309e44d494fc6b09-0904e-mxf8q] [623_1] [WorkflowRunner] [RunParameters] nCores: 8 [2026-06-05T14:00:08.461452Z] [nf-17e7f21733035d30309e44d494fc6b09-0904e-mxf8q] [623_1] [WorkflowRunner] [RunParameters] memMb: 3047507 [2026-06-05T14:00:08.461458Z] [nf-17e7f21733035d30309e44d494fc6b09-0904e-mxf8q] [623_1] [WorkflowRunner] [RunParameters] dataDir: /var/tmp/strelka/workspace/pyflow.data [2026-06-05T14:00:08.461462Z] [nf-17e7f21733035d30309e44d494fc6b09-0904e-mxf8q] [623_1] [WorkflowRunner] [RunParameters] isDryRun: False [2026-06-05T14:00:08.461466Z] [nf-17e7f21733035d30309e44d494fc6b09-0904e-mxf8q] [623_1] [WorkflowRunner] [RunParameters] isContinue: False [2026-06-05T14:00:08.461470Z] [nf-17e7f21733035d30309e44d494fc6b09-0904e-mxf8q] [623_1] [WorkflowRunner] [RunParameters] isForceContinue: True [2026-06-05T14:00:08.461474Z] [nf-17e7f21733035d30309e44d494fc6b09-0904e-mxf8q] [623_1] [WorkflowRunner] [RunParameters] mailTo: '' [2026-06-05T14:00:08.462289Z] [nf-17e7f21733035d30309e44d494fc6b09-0904e-mxf8q] [623_1] [TaskRunner:masterWorkflow] Starting task specification for master workflow [2026-06-05T14:00:08.462429Z] [nf-17e7f21733035d30309e44d494fc6b09-0904e-mxf8q] [623_1] [StrelkaSomaticWorkflow] Initiating Strelka somatic workflow version: 2.9.10 [2026-06-05T14:00:08.468384Z] [nf-17e7f21733035d30309e44d494fc6b09-0904e-mxf8q] [623_1] [WorkflowRunner] Adding sub-workflow task 'CallGenome' to master workflow [2026-06-05T14:00:08.469373Z] [nf-17e7f21733035d30309e44d494fc6b09-0904e-mxf8q] [623_1] [TaskRunner:masterWorkflow] Finished task specification for master workflow [2026-06-05T14:00:08.469635Z] [nf-17e7f21733035d30309e44d494fc6b09-0904e-mxf8q] [623_1] [TaskManager] Launching sub-workflow task: 'CallGenome' from master workflow [2026-06-05T14:00:08.470010Z] [nf-17e7f21733035d30309e44d494fc6b09-0904e-mxf8q] [623_1] [TaskRunner:CallGenome] Starting task specification for sub-workflow [2026-06-05T14:00:08.470202Z] [nf-17e7f21733035d30309e44d494fc6b09-0904e-mxf8q] [623_1] [WorkflowRunner] Adding command task 'CallGenome+makeTmpDir' to sub-workflow 'CallGenome' [2026-06-05T14:00:08.471065Z] [nf-17e7f21733035d30309e44d494fc6b09-0904e-mxf8q] [623_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_015_chr16_0000' to sub-workflow 'CallGenome' [2026-06-05T14:00:08.471292Z] [nf-17e7f21733035d30309e44d494fc6b09-0904e-mxf8q] [623_1] [WorkflowRunner] Adding command task 'CallGenome+fixVcfHeader_chromId_015_chr16_0000' to sub-workflow 'CallGenome' [2026-06-05T14:00:08.471653Z] [nf-17e7f21733035d30309e44d494fc6b09-0904e-mxf8q] [623_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_015_chr16_0000' to sub-workflow 'CallGenome' [2026-06-05T14:00:08.471862Z] [nf-17e7f21733035d30309e44d494fc6b09-0904e-mxf8q] [623_1] [TaskManager] Launching command task: 'CallGenome+makeTmpDir' from sub-workflow 'CallGenome' [2026-06-05T14:00:08.472144Z] [nf-17e7f21733035d30309e44d494fc6b09-0904e-mxf8q] [623_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_015_chr16_0001' to sub-workflow 'CallGenome' [2026-06-05T14:00:08.472248Z] [nf-17e7f21733035d30309e44d494fc6b09-0904e-mxf8q] [623_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_015_chr16_0001' to sub-workflow 'CallGenome' [2026-06-05T14:00:08.472485Z] [nf-17e7f21733035d30309e44d494fc6b09-0904e-mxf8q] [623_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_015_chr16_0002' to sub-workflow 'CallGenome' [2026-06-05T14:00:08.472699Z] [nf-17e7f21733035d30309e44d494fc6b09-0904e-mxf8q] [623_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_015_chr16_0002' to sub-workflow 'CallGenome' [2026-06-05T14:00:08.473395Z] [nf-17e7f21733035d30309e44d494fc6b09-0904e-mxf8q] [623_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_015_chr16_0003' to sub-workflow 'CallGenome' [2026-06-05T14:00:08.473544Z] [nf-17e7f21733035d30309e44d494fc6b09-0904e-mxf8q] [623_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_015_chr16_0003' to sub-workflow 'CallGenome' [2026-06-05T14:00:08.473786Z] [nf-17e7f21733035d30309e44d494fc6b09-0904e-mxf8q] [623_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_015_chr16_0004' to sub-workflow 'CallGenome' [2026-06-05T14:00:08.476175Z] [nf-17e7f21733035d30309e44d494fc6b09-0904e-mxf8q] [623_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_015_chr16_0004' to sub-workflow 'CallGenome' [2026-06-05T14:00:08.476998Z] [nf-17e7f21733035d30309e44d494fc6b09-0904e-mxf8q] [623_1] [TaskRunner:CallGenome+makeTmpDir] Task initiated on local node [2026-06-05T14:00:08.477479Z] [nf-17e7f21733035d30309e44d494fc6b09-0904e-mxf8q] [623_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_015_chr16_0005' to sub-workflow 'CallGenome' [2026-06-05T14:00:08.477600Z] [nf-17e7f21733035d30309e44d494fc6b09-0904e-mxf8q] [623_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_015_chr16_0005' to sub-workflow 'CallGenome' [2026-06-05T14:00:08.477725Z] [nf-17e7f21733035d30309e44d494fc6b09-0904e-mxf8q] [623_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_015_chr16_0006' to sub-workflow 'CallGenome' [2026-06-05T14:00:08.477793Z] [nf-17e7f21733035d30309e44d494fc6b09-0904e-mxf8q] [623_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_015_chr16_0006' to sub-workflow 'CallGenome' [2026-06-05T14:00:08.477911Z] [nf-17e7f21733035d30309e44d494fc6b09-0904e-mxf8q] [623_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_015_chr16_0007' to sub-workflow 'CallGenome' [2026-06-05T14:00:08.478007Z] [nf-17e7f21733035d30309e44d494fc6b09-0904e-mxf8q] [623_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_015_chr16_0007' to sub-workflow 'CallGenome' [2026-06-05T14:00:08.478206Z] [nf-17e7f21733035d30309e44d494fc6b09-0904e-mxf8q] [623_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_016_chr17_0000' to sub-workflow 'CallGenome' [2026-06-05T14:00:08.478276Z] [nf-17e7f21733035d30309e44d494fc6b09-0904e-mxf8q] [623_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_016_chr17_0000' to sub-workflow 'CallGenome' [2026-06-05T14:00:08.478395Z] [nf-17e7f21733035d30309e44d494fc6b09-0904e-mxf8q] [623_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_016_chr17_0001' to sub-workflow 'CallGenome' [2026-06-05T14:00:08.478468Z] [nf-17e7f21733035d30309e44d494fc6b09-0904e-mxf8q] [623_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_016_chr17_0001' to sub-workflow 'CallGenome' [2026-06-05T14:00:08.478690Z] [nf-17e7f21733035d30309e44d494fc6b09-0904e-mxf8q] [623_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_016_chr17_0002' to sub-workflow 'CallGenome' [2026-06-05T14:00:08.479019Z] [nf-17e7f21733035d30309e44d494fc6b09-0904e-mxf8q] [623_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_016_chr17_0002' to sub-workflow 'CallGenome' [2026-06-05T14:00:08.479143Z] [nf-17e7f21733035d30309e44d494fc6b09-0904e-mxf8q] [623_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_016_chr17_0003' to sub-workflow 'CallGenome' [2026-06-05T14:00:08.479209Z] [nf-17e7f21733035d30309e44d494fc6b09-0904e-mxf8q] [623_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_016_chr17_0003' to sub-workflow 'CallGenome' [2026-06-05T14:00:08.479324Z] [nf-17e7f21733035d30309e44d494fc6b09-0904e-mxf8q] [623_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_016_chr17_0004' to sub-workflow 'CallGenome' [2026-06-05T14:00:08.479389Z] [nf-17e7f21733035d30309e44d494fc6b09-0904e-mxf8q] [623_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_016_chr17_0004' to sub-workflow 'CallGenome' [2026-06-05T14:00:08.479500Z] [nf-17e7f21733035d30309e44d494fc6b09-0904e-mxf8q] [623_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_016_chr17_0005' to sub-workflow 'CallGenome' [2026-06-05T14:00:08.479580Z] [nf-17e7f21733035d30309e44d494fc6b09-0904e-mxf8q] [623_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_016_chr17_0005' to sub-workflow 'CallGenome' [2026-06-05T14:00:08.479701Z] [nf-17e7f21733035d30309e44d494fc6b09-0904e-mxf8q] [623_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_016_chr17_0006' to sub-workflow 'CallGenome' [2026-06-05T14:00:08.479764Z] [nf-17e7f21733035d30309e44d494fc6b09-0904e-mxf8q] [623_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_016_chr17_0006' to sub-workflow 'CallGenome' [2026-06-05T14:00:08.479875Z] [nf-17e7f21733035d30309e44d494fc6b09-0904e-mxf8q] [623_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_017_chr18_0000' to sub-workflow 'CallGenome' [2026-06-05T14:00:08.479940Z] [nf-17e7f21733035d30309e44d494fc6b09-0904e-mxf8q] [623_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_017_chr18_0000' to sub-workflow 'CallGenome' [2026-06-05T14:00:08.480102Z] [nf-17e7f21733035d30309e44d494fc6b09-0904e-mxf8q] [623_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_017_chr18_0001' to sub-workflow 'CallGenome' [2026-06-05T14:00:08.480257Z] [nf-17e7f21733035d30309e44d494fc6b09-0904e-mxf8q] [623_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_017_chr18_0001' to sub-workflow 'CallGenome' [2026-06-05T14:00:08.480662Z] [nf-17e7f21733035d30309e44d494fc6b09-0904e-mxf8q] [623_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_017_chr18_0002' to sub-workflow 'CallGenome' [2026-06-05T14:00:08.481056Z] [nf-17e7f21733035d30309e44d494fc6b09-0904e-mxf8q] [623_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_017_chr18_0002' to sub-workflow 'CallGenome' [2026-06-05T14:00:08.481806Z] [nf-17e7f21733035d30309e44d494fc6b09-0904e-mxf8q] [623_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_017_chr18_0003' to sub-workflow 'CallGenome' [2026-06-05T14:00:08.482160Z] [nf-17e7f21733035d30309e44d494fc6b09-0904e-mxf8q] [623_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_017_chr18_0003' to sub-workflow 'CallGenome' [2026-06-05T14:00:08.482282Z] [nf-17e7f21733035d30309e44d494fc6b09-0904e-mxf8q] [623_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_017_chr18_0004' to sub-workflow 'CallGenome' [2026-06-05T14:00:08.482352Z] [nf-17e7f21733035d30309e44d494fc6b09-0904e-mxf8q] [623_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_017_chr18_0004' to sub-workflow 'CallGenome' [2026-06-05T14:00:08.482461Z] [nf-17e7f21733035d30309e44d494fc6b09-0904e-mxf8q] [623_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_017_chr18_0005' to sub-workflow 'CallGenome' [2026-06-05T14:00:08.482526Z] [nf-17e7f21733035d30309e44d494fc6b09-0904e-mxf8q] [623_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_017_chr18_0005' to sub-workflow 'CallGenome' [2026-06-05T14:00:08.482643Z] [nf-17e7f21733035d30309e44d494fc6b09-0904e-mxf8q] [623_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_017_chr18_0006' to sub-workflow 'CallGenome' [2026-06-05T14:00:08.482712Z] [nf-17e7f21733035d30309e44d494fc6b09-0904e-mxf8q] [623_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_017_chr18_0006' to sub-workflow 'CallGenome' [2026-06-05T14:00:08.482888Z] [nf-17e7f21733035d30309e44d494fc6b09-0904e-mxf8q] [623_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_018_chr19_0000' to sub-workflow 'CallGenome' [2026-06-05T14:00:08.482956Z] [nf-17e7f21733035d30309e44d494fc6b09-0904e-mxf8q] [623_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_018_chr19_0000' to sub-workflow 'CallGenome' [2026-06-05T14:00:08.483067Z] [nf-17e7f21733035d30309e44d494fc6b09-0904e-mxf8q] [623_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_018_chr19_0001' to sub-workflow 'CallGenome' [2026-06-05T14:00:08.483133Z] [nf-17e7f21733035d30309e44d494fc6b09-0904e-mxf8q] [623_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_018_chr19_0001' to sub-workflow 'CallGenome' [2026-06-05T14:00:08.483264Z] [nf-17e7f21733035d30309e44d494fc6b09-0904e-mxf8q] [623_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_018_chr19_0002' to sub-workflow 'CallGenome' [2026-06-05T14:00:08.483387Z] [nf-17e7f21733035d30309e44d494fc6b09-0904e-mxf8q] [623_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_018_chr19_0002' to sub-workflow 'CallGenome' [2026-06-05T14:00:08.483760Z] [nf-17e7f21733035d30309e44d494fc6b09-0904e-mxf8q] [623_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_018_chr19_0003' to sub-workflow 'CallGenome' [2026-06-05T14:00:08.484243Z] [nf-17e7f21733035d30309e44d494fc6b09-0904e-mxf8q] [623_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_018_chr19_0003' to sub-workflow 'CallGenome' [2026-06-05T14:00:08.499858Z] [nf-17e7f21733035d30309e44d494fc6b09-0904e-mxf8q] [623_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_018_chr19_0004' to sub-workflow 'CallGenome' [2026-06-05T14:00:08.499973Z] [nf-17e7f21733035d30309e44d494fc6b09-0904e-mxf8q] [623_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_018_chr19_0004' to sub-workflow 'CallGenome' [2026-06-05T14:00:08.500047Z] [nf-17e7f21733035d30309e44d494fc6b09-0904e-mxf8q] [623_1] [WorkflowRunner] Adding command task 'CallGenome+completedAllGenomeSegments' to sub-workflow 'CallGenome' [2026-06-05T14:00:08.500381Z] [nf-17e7f21733035d30309e44d494fc6b09-0904e-mxf8q] [623_1] [WorkflowRunner] Adding command task 'CallGenome+SNV_concat_vcf' to sub-workflow 'CallGenome' [2026-06-05T14:00:08.500456Z] [nf-17e7f21733035d30309e44d494fc6b09-0904e-mxf8q] [623_1] [WorkflowRunner] Adding command task 'CallGenome+SNV_index_vcf' to sub-workflow 'CallGenome' [2026-06-05T14:00:08.500539Z] [nf-17e7f21733035d30309e44d494fc6b09-0904e-mxf8q] [623_1] [WorkflowRunner] Adding command task 'CallGenome+Indel_concat_vcf' to sub-workflow 'CallGenome' [2026-06-05T14:00:08.500687Z] [nf-17e7f21733035d30309e44d494fc6b09-0904e-mxf8q] [623_1] [WorkflowRunner] Adding command task 'CallGenome+Indel_index_vcf' to sub-workflow 'CallGenome' [2026-06-05T14:00:08.500845Z] [nf-17e7f21733035d30309e44d494fc6b09-0904e-mxf8q] [623_1] [WorkflowRunner] Adding command task 'CallGenome+mergeRunStats' to sub-workflow 'CallGenome' [2026-06-05T14:00:08.501054Z] [nf-17e7f21733035d30309e44d494fc6b09-0904e-mxf8q] [623_1] [WorkflowRunner] Adding command task 'CallGenome+removeTmpDir' to sub-workflow 'CallGenome' [2026-06-05T14:00:08.501771Z] [nf-17e7f21733035d30309e44d494fc6b09-0904e-mxf8q] [623_1] [TaskRunner:CallGenome] Finished task specification for sub-workflow [2026-06-05T14:00:08.509862Z] [nf-17e7f21733035d30309e44d494fc6b09-0904e-mxf8q] [623_1] [TaskManager] Completed command task: 'CallGenome+makeTmpDir' launched from sub-workflow 'CallGenome' [2026-06-05T14:00:08.510515Z] [nf-17e7f21733035d30309e44d494fc6b09-0904e-mxf8q] [623_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_018_chr19_0004' from sub-workflow 'CallGenome' [2026-06-05T14:00:08.510796Z] [nf-17e7f21733035d30309e44d494fc6b09-0904e-mxf8q] [623_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_017_chr18_0003' from sub-workflow 'CallGenome' [2026-06-05T14:00:08.511131Z] [nf-17e7f21733035d30309e44d494fc6b09-0904e-mxf8q] [623_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_017_chr18_0006' from sub-workflow 'CallGenome' [2026-06-05T14:00:08.511759Z] [nf-17e7f21733035d30309e44d494fc6b09-0904e-mxf8q] [623_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_017_chr18_0001' from sub-workflow 'CallGenome' [2026-06-05T14:00:08.512430Z] [nf-17e7f21733035d30309e44d494fc6b09-0904e-mxf8q] [623_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_016_chr17_0003' from sub-workflow 'CallGenome' [2026-06-05T14:00:08.513425Z] [nf-17e7f21733035d30309e44d494fc6b09-0904e-mxf8q] [623_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_015_chr16_0006' from sub-workflow 'CallGenome' [2026-06-05T14:00:08.515581Z] [nf-17e7f21733035d30309e44d494fc6b09-0904e-mxf8q] [623_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_018_chr19_0003' from sub-workflow 'CallGenome' [2026-06-05T14:00:08.516551Z] [nf-17e7f21733035d30309e44d494fc6b09-0904e-mxf8q] [623_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_016_chr17_0000' from sub-workflow 'CallGenome' [2026-06-05T14:00:08.523391Z] [nf-17e7f21733035d30309e44d494fc6b09-0904e-mxf8q] [623_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_017_chr18_0003] Task initiated on local node [2026-06-05T14:00:08.528708Z] [nf-17e7f21733035d30309e44d494fc6b09-0904e-mxf8q] [623_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_017_chr18_0001] Task initiated on local node [2026-06-05T14:00:08.533957Z] [nf-17e7f21733035d30309e44d494fc6b09-0904e-mxf8q] [623_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_018_chr19_0003] Task initiated on local node [2026-06-05T14:00:08.535132Z] [nf-17e7f21733035d30309e44d494fc6b09-0904e-mxf8q] [623_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_018_chr19_0004] Task initiated on local node [2026-06-05T14:00:08.535818Z] [nf-17e7f21733035d30309e44d494fc6b09-0904e-mxf8q] [623_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_017_chr18_0006] Task initiated on local node [2026-06-05T14:00:08.541257Z] [nf-17e7f21733035d30309e44d494fc6b09-0904e-mxf8q] [623_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_016_chr17_0003] Task initiated on local node [2026-06-05T14:00:08.543228Z] [nf-17e7f21733035d30309e44d494fc6b09-0904e-mxf8q] [623_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_016_chr17_0000] Task initiated on local node [2026-06-05T14:00:08.544786Z] [nf-17e7f21733035d30309e44d494fc6b09-0904e-mxf8q] [623_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_015_chr16_0006] Task initiated on local node [2026-06-05T14:00:08.734404Z] [nf-17e7f21733035d30309e44d494fc6b09-0904e-mxf8q] [623_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_018_chr19_0003' launched from sub-workflow 'CallGenome' [2026-06-05T14:00:08.734510Z] [nf-17e7f21733035d30309e44d494fc6b09-0904e-mxf8q] [623_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_018_chr19_0004' launched from sub-workflow 'CallGenome' [2026-06-05T14:00:08.735248Z] [nf-17e7f21733035d30309e44d494fc6b09-0904e-mxf8q] [623_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_018_chr19_0000' from sub-workflow 'CallGenome' [2026-06-05T14:00:08.735999Z] [nf-17e7f21733035d30309e44d494fc6b09-0904e-mxf8q] [623_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_018_chr19_0004' from sub-workflow 'CallGenome' [2026-06-05T14:00:08.741960Z] [nf-17e7f21733035d30309e44d494fc6b09-0904e-mxf8q] [623_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_018_chr19_0004] Task initiated on local node [2026-06-05T14:00:08.744084Z] [nf-17e7f21733035d30309e44d494fc6b09-0904e-mxf8q] [623_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_018_chr19_0000] Task initiated on local node [2026-06-05T14:00:08.853862Z] [nf-17e7f21733035d30309e44d494fc6b09-0904e-mxf8q] [623_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_018_chr19_0004' launched from sub-workflow 'CallGenome' [2026-06-05T14:00:08.854712Z] [nf-17e7f21733035d30309e44d494fc6b09-0904e-mxf8q] [623_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_015_chr16_0000' from sub-workflow 'CallGenome' [2026-06-05T14:00:08.858758Z] [nf-17e7f21733035d30309e44d494fc6b09-0904e-mxf8q] [623_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_015_chr16_0000] Task initiated on local node [2026-06-05T14:00:08.970148Z] [nf-17e7f21733035d30309e44d494fc6b09-0904e-mxf8q] [623_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_015_chr16_0000' launched from sub-workflow 'CallGenome' [2026-06-05T14:00:08.970889Z] [nf-17e7f21733035d30309e44d494fc6b09-0904e-mxf8q] [623_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_018_chr19_0003' from sub-workflow 'CallGenome' [2026-06-05T14:00:08.974225Z] [nf-17e7f21733035d30309e44d494fc6b09-0904e-mxf8q] [623_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_018_chr19_0003] Task initiated on local node [2026-06-05T14:00:09.035942Z] [nf-17e7f21733035d30309e44d494fc6b09-0904e-mxf8q] [623_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_018_chr19_0003' launched from sub-workflow 'CallGenome' [2026-06-05T14:00:09.036774Z] [nf-17e7f21733035d30309e44d494fc6b09-0904e-mxf8q] [623_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_015_chr16_0007' from sub-workflow 'CallGenome' [2026-06-05T14:00:09.040091Z] [nf-17e7f21733035d30309e44d494fc6b09-0904e-mxf8q] [623_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_015_chr16_0007] Task initiated on local node [2026-06-05T14:00:09.955039Z] [nf-17e7f21733035d30309e44d494fc6b09-0904e-mxf8q] [623_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_017_chr18_0003' launched from sub-workflow 'CallGenome' [2026-06-05T14:00:09.955135Z] [nf-17e7f21733035d30309e44d494fc6b09-0904e-mxf8q] [623_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_017_chr18_0001' launched from sub-workflow 'CallGenome' [2026-06-05T14:00:09.955851Z] [nf-17e7f21733035d30309e44d494fc6b09-0904e-mxf8q] [623_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_015_chr16_0002' from sub-workflow 'CallGenome' [2026-06-05T14:00:09.956218Z] [nf-17e7f21733035d30309e44d494fc6b09-0904e-mxf8q] [623_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_016_chr17_0002' from sub-workflow 'CallGenome' [2026-06-05T14:00:09.960701Z] [nf-17e7f21733035d30309e44d494fc6b09-0904e-mxf8q] [623_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_016_chr17_0002] Task initiated on local node [2026-06-05T14:00:09.962007Z] [nf-17e7f21733035d30309e44d494fc6b09-0904e-mxf8q] [623_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_015_chr16_0002] Task initiated on local node [2026-06-05T14:00:10.121466Z] [nf-17e7f21733035d30309e44d494fc6b09-0904e-mxf8q] [623_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_017_chr18_0006' launched from sub-workflow 'CallGenome' [2026-06-05T14:00:10.122373Z] [nf-17e7f21733035d30309e44d494fc6b09-0904e-mxf8q] [623_1] [TaskManager] Launching command task: 'CallGenome+fixVcfHeader_chromId_015_chr16_0000' from sub-workflow 'CallGenome' [2026-06-05T14:00:10.125765Z] [nf-17e7f21733035d30309e44d494fc6b09-0904e-mxf8q] [623_1] [TaskRunner:CallGenome+fixVcfHeader_chromId_015_chr16_0000] Task initiated on local node [2026-06-05T14:00:10.187145Z] [nf-17e7f21733035d30309e44d494fc6b09-0904e-mxf8q] [623_1] [TaskManager] Completed command task: 'CallGenome+fixVcfHeader_chromId_015_chr16_0000' launched from sub-workflow 'CallGenome' [2026-06-05T14:00:10.188002Z] [nf-17e7f21733035d30309e44d494fc6b09-0904e-mxf8q] [623_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_016_chr17_0004' from sub-workflow 'CallGenome' [2026-06-05T14:00:10.191838Z] [nf-17e7f21733035d30309e44d494fc6b09-0904e-mxf8q] [623_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_016_chr17_0004] Task initiated on local node [2026-06-05T14:00:11.406765Z] [nf-17e7f21733035d30309e44d494fc6b09-0904e-mxf8q] [623_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_015_chr16_0007' launched from sub-workflow 'CallGenome' [2026-06-05T14:00:11.407508Z] [nf-17e7f21733035d30309e44d494fc6b09-0904e-mxf8q] [623_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_015_chr16_0003' from sub-workflow 'CallGenome' [2026-06-05T14:00:11.411257Z] [nf-17e7f21733035d30309e44d494fc6b09-0904e-mxf8q] [623_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_015_chr16_0003] Task initiated on local node [2026-06-05T14:00:11.472831Z] [nf-17e7f21733035d30309e44d494fc6b09-0904e-mxf8q] [623_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_015_chr16_0006' launched from sub-workflow 'CallGenome' [2026-06-05T14:00:11.473693Z] [nf-17e7f21733035d30309e44d494fc6b09-0904e-mxf8q] [623_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_015_chr16_0006' from sub-workflow 'CallGenome' [2026-06-05T14:00:11.477469Z] [nf-17e7f21733035d30309e44d494fc6b09-0904e-mxf8q] [623_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_015_chr16_0006] Task initiated on local node [2026-06-05T14:00:11.477880Z] [nf-17e7f21733035d30309e44d494fc6b09-0904e-mxf8q] [623_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_015_chr16_0003' launched from sub-workflow 'CallGenome' [2026-06-05T14:00:11.478553Z] [nf-17e7f21733035d30309e44d494fc6b09-0904e-mxf8q] [623_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_016_chr17_0006' from sub-workflow 'CallGenome' [2026-06-05T14:00:11.482227Z] [nf-17e7f21733035d30309e44d494fc6b09-0904e-mxf8q] [623_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_016_chr17_0006] Task initiated on local node [2026-06-05T14:00:11.487003Z] [nf-17e7f21733035d30309e44d494fc6b09-0904e-mxf8q] [623_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_015_chr16_0002' launched from sub-workflow 'CallGenome' [2026-06-05T14:00:11.487561Z] [nf-17e7f21733035d30309e44d494fc6b09-0904e-mxf8q] [623_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_015_chr16_0004' from sub-workflow 'CallGenome' [2026-06-05T14:00:11.491445Z] [nf-17e7f21733035d30309e44d494fc6b09-0904e-mxf8q] [623_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_015_chr16_0004] Task initiated on local node [2026-06-05T14:00:11.520347Z] [nf-17e7f21733035d30309e44d494fc6b09-0904e-mxf8q] [623_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_015_chr16_0006' launched from sub-workflow 'CallGenome' [2026-06-05T14:00:11.521145Z] [nf-17e7f21733035d30309e44d494fc6b09-0904e-mxf8q] [623_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_015_chr16_0000' from sub-workflow 'CallGenome' [2026-06-05T14:00:11.524580Z] [nf-17e7f21733035d30309e44d494fc6b09-0904e-mxf8q] [623_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_015_chr16_0000] Task initiated on local node [2026-06-05T14:00:11.585919Z] [nf-17e7f21733035d30309e44d494fc6b09-0904e-mxf8q] [623_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_015_chr16_0000' launched from sub-workflow 'CallGenome' [2026-06-05T14:00:11.586974Z] [nf-17e7f21733035d30309e44d494fc6b09-0904e-mxf8q] [623_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_016_chr17_0005' from sub-workflow 'CallGenome' [2026-06-05T14:00:11.590779Z] [nf-17e7f21733035d30309e44d494fc6b09-0904e-mxf8q] [623_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_016_chr17_0005] Task initiated on local node [2026-06-05T14:00:12.002656Z] [nf-17e7f21733035d30309e44d494fc6b09-0904e-mxf8q] [623_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_016_chr17_0002' launched from sub-workflow 'CallGenome' [2026-06-05T14:00:12.003972Z] [nf-17e7f21733035d30309e44d494fc6b09-0904e-mxf8q] [623_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_016_chr17_0002' from sub-workflow 'CallGenome' [2026-06-05T14:00:12.007568Z] [nf-17e7f21733035d30309e44d494fc6b09-0904e-mxf8q] [623_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_016_chr17_0002] Task initiated on local node [2026-06-05T14:00:12.068999Z] [nf-17e7f21733035d30309e44d494fc6b09-0904e-mxf8q] [623_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_016_chr17_0002' launched from sub-workflow 'CallGenome' [2026-06-05T14:00:12.070068Z] [nf-17e7f21733035d30309e44d494fc6b09-0904e-mxf8q] [623_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_015_chr16_0007' from sub-workflow 'CallGenome' [2026-06-05T14:00:12.073638Z] [nf-17e7f21733035d30309e44d494fc6b09-0904e-mxf8q] [623_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_015_chr16_0007] Task initiated on local node [2026-06-05T14:00:12.134872Z] [nf-17e7f21733035d30309e44d494fc6b09-0904e-mxf8q] [623_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_015_chr16_0007' launched from sub-workflow 'CallGenome' [2026-06-05T14:00:12.135838Z] [nf-17e7f21733035d30309e44d494fc6b09-0904e-mxf8q] [623_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_015_chr16_0005' from sub-workflow 'CallGenome' [2026-06-05T14:00:12.139862Z] [nf-17e7f21733035d30309e44d494fc6b09-0904e-mxf8q] [623_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_015_chr16_0005] Task initiated on local node [2026-06-05T14:00:12.702115Z] [nf-17e7f21733035d30309e44d494fc6b09-0904e-mxf8q] [623_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_016_chr17_0000' launched from sub-workflow 'CallGenome' [2026-06-05T14:00:12.703262Z] [nf-17e7f21733035d30309e44d494fc6b09-0904e-mxf8q] [623_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_015_chr16_0002' from sub-workflow 'CallGenome' [2026-06-05T14:00:12.706819Z] [nf-17e7f21733035d30309e44d494fc6b09-0904e-mxf8q] [623_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_015_chr16_0002] Task initiated on local node [2026-06-05T14:00:12.767993Z] [nf-17e7f21733035d30309e44d494fc6b09-0904e-mxf8q] [623_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_015_chr16_0002' launched from sub-workflow 'CallGenome' [2026-06-05T14:00:12.769195Z] [nf-17e7f21733035d30309e44d494fc6b09-0904e-mxf8q] [623_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_017_chr18_0000' from sub-workflow 'CallGenome' [2026-06-05T14:00:12.772511Z] [nf-17e7f21733035d30309e44d494fc6b09-0904e-mxf8q] [623_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_017_chr18_0000] Task initiated on local node [2026-06-05T14:00:12.884042Z] [nf-17e7f21733035d30309e44d494fc6b09-0904e-mxf8q] [623_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_018_chr19_0000' launched from sub-workflow 'CallGenome' [2026-06-05T14:00:12.885367Z] [nf-17e7f21733035d30309e44d494fc6b09-0904e-mxf8q] [623_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_018_chr19_0000' from sub-workflow 'CallGenome' [2026-06-05T14:00:12.889231Z] [nf-17e7f21733035d30309e44d494fc6b09-0904e-mxf8q] [623_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_018_chr19_0000] Task initiated on local node [2026-06-05T14:00:12.917903Z] [nf-17e7f21733035d30309e44d494fc6b09-0904e-mxf8q] [623_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_015_chr16_0004' launched from sub-workflow 'CallGenome' [2026-06-05T14:00:12.919288Z] [nf-17e7f21733035d30309e44d494fc6b09-0904e-mxf8q] [623_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_015_chr16_0004' from sub-workflow 'CallGenome' [2026-06-05T14:00:12.922894Z] [nf-17e7f21733035d30309e44d494fc6b09-0904e-mxf8q] [623_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_015_chr16_0004] Task initiated on local node [2026-06-05T14:00:12.935774Z] [nf-17e7f21733035d30309e44d494fc6b09-0904e-mxf8q] [623_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_018_chr19_0000' launched from sub-workflow 'CallGenome' [2026-06-05T14:00:12.936669Z] [nf-17e7f21733035d30309e44d494fc6b09-0904e-mxf8q] [623_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_017_chr18_0005' from sub-workflow 'CallGenome' [2026-06-05T14:00:12.939975Z] [nf-17e7f21733035d30309e44d494fc6b09-0904e-mxf8q] [623_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_017_chr18_0005] Task initiated on local node [2026-06-05T14:00:12.945165Z] [nf-17e7f21733035d30309e44d494fc6b09-0904e-mxf8q] [623_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_016_chr17_0003' launched from sub-workflow 'CallGenome' [2026-06-05T14:00:12.946174Z] [nf-17e7f21733035d30309e44d494fc6b09-0904e-mxf8q] [623_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_016_chr17_0003' from sub-workflow 'CallGenome' [2026-06-05T14:00:12.949962Z] [nf-17e7f21733035d30309e44d494fc6b09-0904e-mxf8q] [623_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_016_chr17_0003] Task initiated on local node [2026-06-05T14:00:12.962533Z] [nf-17e7f21733035d30309e44d494fc6b09-0904e-mxf8q] [623_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_015_chr16_0004' launched from sub-workflow 'CallGenome' [2026-06-05T14:00:12.963185Z] [nf-17e7f21733035d30309e44d494fc6b09-0904e-mxf8q] [623_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_016_chr17_0001' from sub-workflow 'CallGenome' [2026-06-05T14:00:12.966434Z] [nf-17e7f21733035d30309e44d494fc6b09-0904e-mxf8q] [623_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_016_chr17_0001] Task initiated on local node [2026-06-05T14:00:12.995724Z] [nf-17e7f21733035d30309e44d494fc6b09-0904e-mxf8q] [623_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_016_chr17_0003' launched from sub-workflow 'CallGenome' [2026-06-05T14:00:12.996444Z] [nf-17e7f21733035d30309e44d494fc6b09-0904e-mxf8q] [623_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_017_chr18_0001' from sub-workflow 'CallGenome' [2026-06-05T14:00:13.000077Z] [nf-17e7f21733035d30309e44d494fc6b09-0904e-mxf8q] [623_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_017_chr18_0001] Task initiated on local node [2026-06-05T14:00:13.061067Z] [nf-17e7f21733035d30309e44d494fc6b09-0904e-mxf8q] [623_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_017_chr18_0001' launched from sub-workflow 'CallGenome' [2026-06-05T14:00:13.062016Z] [nf-17e7f21733035d30309e44d494fc6b09-0904e-mxf8q] [623_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_017_chr18_0004' from sub-workflow 'CallGenome' [2026-06-05T14:00:13.065237Z] [nf-17e7f21733035d30309e44d494fc6b09-0904e-mxf8q] [623_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_017_chr18_0004] Task initiated on local node [2026-06-05T14:00:13.527745Z] [nf-17e7f21733035d30309e44d494fc6b09-0904e-mxf8q] [623_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_016_chr17_0004' launched from sub-workflow 'CallGenome' [2026-06-05T14:00:13.528331Z] [nf-17e7f21733035d30309e44d494fc6b09-0904e-mxf8q] [623_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_016_chr17_0004' from sub-workflow 'CallGenome' [2026-06-05T14:00:13.531482Z] [nf-17e7f21733035d30309e44d494fc6b09-0904e-mxf8q] [623_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_016_chr17_0004] Task initiated on local node [2026-06-05T14:00:13.593175Z] [nf-17e7f21733035d30309e44d494fc6b09-0904e-mxf8q] [623_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_016_chr17_0004' launched from sub-workflow 'CallGenome' [2026-06-05T14:00:13.593864Z] [nf-17e7f21733035d30309e44d494fc6b09-0904e-mxf8q] [623_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_017_chr18_0002' from sub-workflow 'CallGenome' [2026-06-05T14:00:13.597531Z] [nf-17e7f21733035d30309e44d494fc6b09-0904e-mxf8q] [623_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_017_chr18_0002] Task initiated on local node [2026-06-05T14:00:13.758736Z] [nf-17e7f21733035d30309e44d494fc6b09-0904e-mxf8q] [623_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_015_chr16_0005' launched from sub-workflow 'CallGenome' [2026-06-05T14:00:13.759420Z] [nf-17e7f21733035d30309e44d494fc6b09-0904e-mxf8q] [623_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_018_chr19_0001' from sub-workflow 'CallGenome' [2026-06-05T14:00:13.762964Z] [nf-17e7f21733035d30309e44d494fc6b09-0904e-mxf8q] [623_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_018_chr19_0001] Task initiated on local node [2026-06-05T14:00:14.275478Z] [nf-17e7f21733035d30309e44d494fc6b09-0904e-mxf8q] [623_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_017_chr18_0005' launched from sub-workflow 'CallGenome' [2026-06-05T14:00:14.276025Z] [nf-17e7f21733035d30309e44d494fc6b09-0904e-mxf8q] [623_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_015_chr16_0005' from sub-workflow 'CallGenome' [2026-06-05T14:00:14.279045Z] [nf-17e7f21733035d30309e44d494fc6b09-0904e-mxf8q] [623_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_015_chr16_0005] Task initiated on local node [2026-06-05T14:00:14.340470Z] [nf-17e7f21733035d30309e44d494fc6b09-0904e-mxf8q] [623_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_015_chr16_0005' launched from sub-workflow 'CallGenome' [2026-06-05T14:00:14.341118Z] [nf-17e7f21733035d30309e44d494fc6b09-0904e-mxf8q] [623_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_015_chr16_0001' from sub-workflow 'CallGenome' [2026-06-05T14:00:14.344583Z] [nf-17e7f21733035d30309e44d494fc6b09-0904e-mxf8q] [623_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_015_chr16_0001] Task initiated on local node [2026-06-05T14:00:14.405791Z] [nf-17e7f21733035d30309e44d494fc6b09-0904e-mxf8q] [623_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_015_chr16_0001' launched from sub-workflow 'CallGenome' [2026-06-05T14:00:14.406407Z] [nf-17e7f21733035d30309e44d494fc6b09-0904e-mxf8q] [623_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_018_chr19_0002' from sub-workflow 'CallGenome' [2026-06-05T14:00:14.410503Z] [nf-17e7f21733035d30309e44d494fc6b09-0904e-mxf8q] [623_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_018_chr19_0002] Task initiated on local node [2026-06-05T14:00:14.471306Z] [nf-17e7f21733035d30309e44d494fc6b09-0904e-mxf8q] [623_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_018_chr19_0002' launched from sub-workflow 'CallGenome' [2026-06-05T14:00:14.471903Z] [nf-17e7f21733035d30309e44d494fc6b09-0904e-mxf8q] [623_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_018_chr19_0002' from sub-workflow 'CallGenome' [2026-06-05T14:00:14.474850Z] [nf-17e7f21733035d30309e44d494fc6b09-0904e-mxf8q] [623_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_018_chr19_0002] Task initiated on local node [2026-06-05T14:00:14.479897Z] [nf-17e7f21733035d30309e44d494fc6b09-0904e-mxf8q] [623_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_017_chr18_0000' launched from sub-workflow 'CallGenome' [2026-06-05T14:00:14.480430Z] [nf-17e7f21733035d30309e44d494fc6b09-0904e-mxf8q] [623_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_017_chr18_0000' from sub-workflow 'CallGenome' [2026-06-05T14:00:14.483291Z] [nf-17e7f21733035d30309e44d494fc6b09-0904e-mxf8q] [623_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_017_chr18_0000] Task initiated on local node [2026-06-05T14:00:14.512515Z] [nf-17e7f21733035d30309e44d494fc6b09-0904e-mxf8q] [623_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_018_chr19_0002' launched from sub-workflow 'CallGenome' [2026-06-05T14:00:14.513073Z] [nf-17e7f21733035d30309e44d494fc6b09-0904e-mxf8q] [623_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_017_chr18_0005' from sub-workflow 'CallGenome' [2026-06-05T14:00:14.516140Z] [nf-17e7f21733035d30309e44d494fc6b09-0904e-mxf8q] [623_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_017_chr18_0005] Task initiated on local node [2026-06-05T14:00:14.516883Z] [nf-17e7f21733035d30309e44d494fc6b09-0904e-mxf8q] [623_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_017_chr18_0000' launched from sub-workflow 'CallGenome' [2026-06-05T14:00:14.516986Z] [nf-17e7f21733035d30309e44d494fc6b09-0904e-mxf8q] [623_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_016_chr17_0005' launched from sub-workflow 'CallGenome' [2026-06-05T14:00:14.517470Z] [nf-17e7f21733035d30309e44d494fc6b09-0904e-mxf8q] [623_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_016_chr17_0000' from sub-workflow 'CallGenome' [2026-06-05T14:00:14.517805Z] [nf-17e7f21733035d30309e44d494fc6b09-0904e-mxf8q] [623_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_015_chr16_0003' from sub-workflow 'CallGenome' [2026-06-05T14:00:14.521341Z] [nf-17e7f21733035d30309e44d494fc6b09-0904e-mxf8q] [623_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_015_chr16_0003] Task initiated on local node [2026-06-05T14:00:14.522188Z] [nf-17e7f21733035d30309e44d494fc6b09-0904e-mxf8q] [623_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_016_chr17_0000] Task initiated on local node [2026-06-05T14:00:14.551672Z] [nf-17e7f21733035d30309e44d494fc6b09-0904e-mxf8q] [623_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_017_chr18_0005' launched from sub-workflow 'CallGenome' [2026-06-05T14:00:14.552211Z] [nf-17e7f21733035d30309e44d494fc6b09-0904e-mxf8q] [623_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_017_chr18_0006' from sub-workflow 'CallGenome' [2026-06-05T14:00:14.555745Z] [nf-17e7f21733035d30309e44d494fc6b09-0904e-mxf8q] [623_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_017_chr18_0006] Task initiated on local node [2026-06-05T14:00:14.556270Z] [nf-17e7f21733035d30309e44d494fc6b09-0904e-mxf8q] [623_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_016_chr17_0000' launched from sub-workflow 'CallGenome' [2026-06-05T14:00:14.556797Z] [nf-17e7f21733035d30309e44d494fc6b09-0904e-mxf8q] [623_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_016_chr17_0005' from sub-workflow 'CallGenome' [2026-06-05T14:00:14.557463Z] [nf-17e7f21733035d30309e44d494fc6b09-0904e-mxf8q] [623_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_015_chr16_0003' launched from sub-workflow 'CallGenome' [2026-06-05T14:00:14.559549Z] [nf-17e7f21733035d30309e44d494fc6b09-0904e-mxf8q] [623_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_017_chr18_0003' from sub-workflow 'CallGenome' [2026-06-05T14:00:14.561643Z] [nf-17e7f21733035d30309e44d494fc6b09-0904e-mxf8q] [623_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_016_chr17_0005] Task initiated on local node [2026-06-05T14:00:14.562765Z] [nf-17e7f21733035d30309e44d494fc6b09-0904e-mxf8q] [623_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_017_chr18_0003] Task initiated on local node [2026-06-05T14:00:14.592225Z] [nf-17e7f21733035d30309e44d494fc6b09-0904e-mxf8q] [623_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_017_chr18_0006' launched from sub-workflow 'CallGenome' [2026-06-05T14:00:14.592658Z] [nf-17e7f21733035d30309e44d494fc6b09-0904e-mxf8q] [623_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_015_chr16_0001' from sub-workflow 'CallGenome' [2026-06-05T14:00:14.595750Z] [nf-17e7f21733035d30309e44d494fc6b09-0904e-mxf8q] [623_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_015_chr16_0001] Task initiated on local node [2026-06-05T14:00:14.596195Z] [nf-17e7f21733035d30309e44d494fc6b09-0904e-mxf8q] [623_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_016_chr17_0005' launched from sub-workflow 'CallGenome' [2026-06-05T14:00:14.596240Z] [nf-17e7f21733035d30309e44d494fc6b09-0904e-mxf8q] [623_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_017_chr18_0003' launched from sub-workflow 'CallGenome' [2026-06-05T14:00:14.660546Z] [nf-17e7f21733035d30309e44d494fc6b09-0904e-mxf8q] [623_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_015_chr16_0001' launched from sub-workflow 'CallGenome' [2026-06-05T14:00:14.925649Z] [nf-17e7f21733035d30309e44d494fc6b09-0904e-mxf8q] [623_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_018_chr19_0001' launched from sub-workflow 'CallGenome' [2026-06-05T14:00:14.925734Z] [nf-17e7f21733035d30309e44d494fc6b09-0904e-mxf8q] [623_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_017_chr18_0004' launched from sub-workflow 'CallGenome' [2026-06-05T14:00:14.926168Z] [nf-17e7f21733035d30309e44d494fc6b09-0904e-mxf8q] [623_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_017_chr18_0004' from sub-workflow 'CallGenome' [2026-06-05T14:00:14.926539Z] [nf-17e7f21733035d30309e44d494fc6b09-0904e-mxf8q] [623_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_018_chr19_0001' from sub-workflow 'CallGenome' [2026-06-05T14:00:14.929961Z] [nf-17e7f21733035d30309e44d494fc6b09-0904e-mxf8q] [623_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_018_chr19_0001] Task initiated on local node [2026-06-05T14:00:14.931311Z] [nf-17e7f21733035d30309e44d494fc6b09-0904e-mxf8q] [623_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_017_chr18_0004] Task initiated on local node [2026-06-05T14:00:14.991056Z] [nf-17e7f21733035d30309e44d494fc6b09-0904e-mxf8q] [623_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_017_chr18_0004' launched from sub-workflow 'CallGenome' [2026-06-05T14:00:14.991161Z] [nf-17e7f21733035d30309e44d494fc6b09-0904e-mxf8q] [623_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_018_chr19_0001' launched from sub-workflow 'CallGenome' [2026-06-05T14:00:15.205668Z] [nf-17e7f21733035d30309e44d494fc6b09-0904e-mxf8q] [623_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_016_chr17_0006' launched from sub-workflow 'CallGenome' [2026-06-05T14:00:15.206276Z] [nf-17e7f21733035d30309e44d494fc6b09-0904e-mxf8q] [623_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_016_chr17_0006' from sub-workflow 'CallGenome' [2026-06-05T14:00:15.209165Z] [nf-17e7f21733035d30309e44d494fc6b09-0904e-mxf8q] [623_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_016_chr17_0006] Task initiated on local node [2026-06-05T14:00:15.222402Z] [nf-17e7f21733035d30309e44d494fc6b09-0904e-mxf8q] [623_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_016_chr17_0001' launched from sub-workflow 'CallGenome' [2026-06-05T14:00:15.222995Z] [nf-17e7f21733035d30309e44d494fc6b09-0904e-mxf8q] [623_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_016_chr17_0001' from sub-workflow 'CallGenome' [2026-06-05T14:00:15.225592Z] [nf-17e7f21733035d30309e44d494fc6b09-0904e-mxf8q] [623_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_016_chr17_0001] Task initiated on local node [2026-06-05T14:00:15.255085Z] [nf-17e7f21733035d30309e44d494fc6b09-0904e-mxf8q] [623_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_016_chr17_0006' launched from sub-workflow 'CallGenome' [2026-06-05T14:00:15.258807Z] [nf-17e7f21733035d30309e44d494fc6b09-0904e-mxf8q] [623_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_016_chr17_0001' launched from sub-workflow 'CallGenome' [2026-06-05T14:00:15.423076Z] [nf-17e7f21733035d30309e44d494fc6b09-0904e-mxf8q] [623_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_017_chr18_0002' launched from sub-workflow 'CallGenome' [2026-06-05T14:00:15.423589Z] [nf-17e7f21733035d30309e44d494fc6b09-0904e-mxf8q] [623_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_017_chr18_0002' from sub-workflow 'CallGenome' [2026-06-05T14:00:15.426797Z] [nf-17e7f21733035d30309e44d494fc6b09-0904e-mxf8q] [623_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_017_chr18_0002] Task initiated on local node [2026-06-05T14:00:15.488121Z] [nf-17e7f21733035d30309e44d494fc6b09-0904e-mxf8q] [623_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_017_chr18_0002' launched from sub-workflow 'CallGenome' [2026-06-05T14:00:15.488447Z] [nf-17e7f21733035d30309e44d494fc6b09-0904e-mxf8q] [623_1] [TaskManager] Completed command task: 'CallGenome+completedAllGenomeSegments' launched from sub-workflow 'CallGenome' [2026-06-05T14:00:15.488792Z] [nf-17e7f21733035d30309e44d494fc6b09-0904e-mxf8q] [623_1] [TaskManager] Launching command task: 'CallGenome+mergeRunStats' from sub-workflow 'CallGenome' [2026-06-05T14:00:15.489382Z] [nf-17e7f21733035d30309e44d494fc6b09-0904e-mxf8q] [623_1] [TaskManager] Launching command task: 'CallGenome+SNV_concat_vcf' from sub-workflow 'CallGenome' [2026-06-05T14:00:15.489876Z] [nf-17e7f21733035d30309e44d494fc6b09-0904e-mxf8q] [623_1] [TaskManager] Launching command task: 'CallGenome+Indel_concat_vcf' from sub-workflow 'CallGenome' [2026-06-05T14:00:15.494582Z] [nf-17e7f21733035d30309e44d494fc6b09-0904e-mxf8q] [623_1] [TaskRunner:CallGenome+Indel_concat_vcf] Task initiated on local node [2026-06-05T14:00:15.495963Z] [nf-17e7f21733035d30309e44d494fc6b09-0904e-mxf8q] [623_1] [TaskRunner:CallGenome+mergeRunStats] Task initiated on local node [2026-06-05T14:00:15.497061Z] [nf-17e7f21733035d30309e44d494fc6b09-0904e-mxf8q] [623_1] [TaskRunner:CallGenome+SNV_concat_vcf] Task initiated on local node [2026-06-05T14:00:15.554833Z] [nf-17e7f21733035d30309e44d494fc6b09-0904e-mxf8q] [623_1] [TaskManager] Completed command task: 'CallGenome+mergeRunStats' launched from sub-workflow 'CallGenome' [2026-06-05T14:00:15.554921Z] [nf-17e7f21733035d30309e44d494fc6b09-0904e-mxf8q] [623_1] [TaskManager] Completed command task: 'CallGenome+Indel_concat_vcf' launched from sub-workflow 'CallGenome' [2026-06-05T14:00:15.554952Z] [nf-17e7f21733035d30309e44d494fc6b09-0904e-mxf8q] [623_1] [TaskManager] Completed command task: 'CallGenome+SNV_concat_vcf' launched from sub-workflow 'CallGenome' [2026-06-05T14:00:15.555255Z] [nf-17e7f21733035d30309e44d494fc6b09-0904e-mxf8q] [623_1] [TaskManager] Launching command task: 'CallGenome+SNV_index_vcf' from sub-workflow 'CallGenome' [2026-06-05T14:00:15.555917Z] [nf-17e7f21733035d30309e44d494fc6b09-0904e-mxf8q] [623_1] [TaskManager] Launching command task: 'CallGenome+Indel_index_vcf' from sub-workflow 'CallGenome' [2026-06-05T14:00:15.559376Z] [nf-17e7f21733035d30309e44d494fc6b09-0904e-mxf8q] [623_1] [TaskRunner:CallGenome+SNV_index_vcf] Task initiated on local node [2026-06-05T14:00:15.560124Z] [nf-17e7f21733035d30309e44d494fc6b09-0904e-mxf8q] [623_1] [TaskRunner:CallGenome+Indel_index_vcf] Task initiated on local node [2026-06-05T14:00:15.589652Z] [nf-17e7f21733035d30309e44d494fc6b09-0904e-mxf8q] [623_1] [TaskManager] Completed command task: 'CallGenome+SNV_index_vcf' launched from sub-workflow 'CallGenome' [2026-06-05T14:00:15.589737Z] [nf-17e7f21733035d30309e44d494fc6b09-0904e-mxf8q] [623_1] [TaskManager] Completed command task: 'CallGenome+Indel_index_vcf' launched from sub-workflow 'CallGenome' [2026-06-05T14:00:15.589989Z] [nf-17e7f21733035d30309e44d494fc6b09-0904e-mxf8q] [623_1] [TaskManager] Launching command task: 'CallGenome+removeTmpDir' from sub-workflow 'CallGenome' [2026-06-05T14:00:15.592679Z] [nf-17e7f21733035d30309e44d494fc6b09-0904e-mxf8q] [623_1] [TaskRunner:CallGenome+removeTmpDir] Task initiated on local node [2026-06-05T14:00:15.654191Z] [nf-17e7f21733035d30309e44d494fc6b09-0904e-mxf8q] [623_1] [TaskManager] Completed command task: 'CallGenome+removeTmpDir' launched from sub-workflow 'CallGenome' [2026-06-05T14:00:19.026665Z] [nf-17e7f21733035d30309e44d494fc6b09-0904e-mxf8q] [623_1] [TaskManager] Completed sub-workflow task: 'CallGenome' launched from master workflow [2026-06-05T14:00:27.350371Z] [nf-17e7f21733035d30309e44d494fc6b09-0904e-mxf8q] [623_1] [WorkflowRunner] Strelka somatic workflow successfully completed. [2026-06-05T14:00:27.350371Z] [nf-17e7f21733035d30309e44d494fc6b09-0904e-mxf8q] [623_1] [WorkflowRunner] [2026-06-05T14:00:27.350371Z] [nf-17e7f21733035d30309e44d494fc6b09-0904e-mxf8q] [623_1] [WorkflowRunner] workflow version: 2.9.10 [2026-06-05T14:00:27.350424Z] [nf-17e7f21733035d30309e44d494fc6b09-0904e-mxf8q] [623_1] [WorkflowRunner] [2026-06-05T14:00:27.350429Z] [nf-17e7f21733035d30309e44d494fc6b09-0904e-mxf8q] [623_1] [WorkflowRunner] Workflow successfully completed all tasks [2026-06-05T14:00:27.350435Z] [nf-17e7f21733035d30309e44d494fc6b09-0904e-mxf8q] [623_1] [WorkflowRunner] Elapsed time for full workflow: 18 sec