File Info

Filename
.command.err
Full Path
s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/2e/26ff0a781b507d6e40a8f087be8d33/.command.err
Size
68.3 KB
Task
DAQ:CONTROL_VARIANT_CALLING:CONTROL_SOMATIC_VC:BAM_VARIANT_CALLING_SOMATIC_STRELKA:STRELKA_SOMATIC (negative_somatic_control_2;chr10_74133927-74134264.bed)
Attempt

Content

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[2026-06-05T13:59:50.482909Z] [nf-2e26ff0a781b507d6e40a8f087be8d33-6ea65-r94v2] [603_1] [WorkflowRunner] Initiating pyFlow run
[2026-06-05T13:59:50.532632Z] [nf-2e26ff0a781b507d6e40a8f087be8d33-6ea65-r94v2] [603_1] [WorkflowRunner] pyFlowClientWorkflowClass: StrelkaSomaticWorkflow
[2026-06-05T13:59:50.532658Z] [nf-2e26ff0a781b507d6e40a8f087be8d33-6ea65-r94v2] [603_1] [WorkflowRunner] pyFlowVersion: 1.1.20
[2026-06-05T13:59:50.532664Z] [nf-2e26ff0a781b507d6e40a8f087be8d33-6ea65-r94v2] [603_1] [WorkflowRunner] pythonVersion: 2.7.15.final.0
[2026-06-05T13:59:50.532669Z] [nf-2e26ff0a781b507d6e40a8f087be8d33-6ea65-r94v2] [603_1] [WorkflowRunner] WorkingDir: '/tmp/nxf.XXXXqxeOcI'
[2026-06-05T13:59:50.532674Z] [nf-2e26ff0a781b507d6e40a8f087be8d33-6ea65-r94v2] [603_1] [WorkflowRunner] ProcessCmdLine: '/var/tmp/strelka/runWorkflow.py -m local -j 8'
[2026-06-05T13:59:50.532679Z] [nf-2e26ff0a781b507d6e40a8f087be8d33-6ea65-r94v2] [603_1] [WorkflowRunner] [RunParameters] mode: local
[2026-06-05T13:59:50.532683Z] [nf-2e26ff0a781b507d6e40a8f087be8d33-6ea65-r94v2] [603_1] [WorkflowRunner] [RunParameters] nCores: 8
[2026-06-05T13:59:50.532686Z] [nf-2e26ff0a781b507d6e40a8f087be8d33-6ea65-r94v2] [603_1] [WorkflowRunner] [RunParameters] memMb: 1547931
[2026-06-05T13:59:50.532690Z] [nf-2e26ff0a781b507d6e40a8f087be8d33-6ea65-r94v2] [603_1] [WorkflowRunner] [RunParameters] dataDir: /var/tmp/strelka/workspace/pyflow.data
[2026-06-05T13:59:50.532693Z] [nf-2e26ff0a781b507d6e40a8f087be8d33-6ea65-r94v2] [603_1] [WorkflowRunner] [RunParameters] isDryRun: False
[2026-06-05T13:59:50.532697Z] [nf-2e26ff0a781b507d6e40a8f087be8d33-6ea65-r94v2] [603_1] [WorkflowRunner] [RunParameters] isContinue: False
[2026-06-05T13:59:50.532700Z] [nf-2e26ff0a781b507d6e40a8f087be8d33-6ea65-r94v2] [603_1] [WorkflowRunner] [RunParameters] isForceContinue: True
[2026-06-05T13:59:50.532704Z] [nf-2e26ff0a781b507d6e40a8f087be8d33-6ea65-r94v2] [603_1] [WorkflowRunner] [RunParameters] mailTo: ''
[2026-06-05T13:59:50.533449Z] [nf-2e26ff0a781b507d6e40a8f087be8d33-6ea65-r94v2] [603_1] [TaskRunner:masterWorkflow] Starting task specification for master workflow
[2026-06-05T13:59:50.533500Z] [nf-2e26ff0a781b507d6e40a8f087be8d33-6ea65-r94v2] [603_1] [StrelkaSomaticWorkflow] Initiating Strelka somatic workflow version: 2.9.10
[2026-06-05T13:59:50.539272Z] [nf-2e26ff0a781b507d6e40a8f087be8d33-6ea65-r94v2] [603_1] [WorkflowRunner] Adding sub-workflow task 'CallGenome' to master workflow
[2026-06-05T13:59:50.539862Z] [nf-2e26ff0a781b507d6e40a8f087be8d33-6ea65-r94v2] [603_1] [TaskManager] Launching sub-workflow task: 'CallGenome' from master workflow
[2026-06-05T13:59:50.540015Z] [nf-2e26ff0a781b507d6e40a8f087be8d33-6ea65-r94v2] [603_1] [TaskRunner:masterWorkflow] Finished task specification for master workflow
[2026-06-05T13:59:50.540259Z] [nf-2e26ff0a781b507d6e40a8f087be8d33-6ea65-r94v2] [603_1] [TaskRunner:CallGenome] Starting task specification for sub-workflow
[2026-06-05T13:59:50.540475Z] [nf-2e26ff0a781b507d6e40a8f087be8d33-6ea65-r94v2] [603_1] [WorkflowRunner] Adding command task 'CallGenome+makeTmpDir' to sub-workflow 'CallGenome'
[2026-06-05T13:59:50.541168Z] [nf-2e26ff0a781b507d6e40a8f087be8d33-6ea65-r94v2] [603_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0000' to sub-workflow 'CallGenome'
[2026-06-05T13:59:50.541279Z] [nf-2e26ff0a781b507d6e40a8f087be8d33-6ea65-r94v2] [603_1] [WorkflowRunner] Adding command task 'CallGenome+fixVcfHeader_chromId_009_chr10_0000' to sub-workflow 'CallGenome'
[2026-06-05T13:59:50.541351Z] [nf-2e26ff0a781b507d6e40a8f087be8d33-6ea65-r94v2] [603_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0000' to sub-workflow 'CallGenome'
[2026-06-05T13:59:50.541468Z] [nf-2e26ff0a781b507d6e40a8f087be8d33-6ea65-r94v2] [603_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0001' to sub-workflow 'CallGenome'
[2026-06-05T13:59:50.541533Z] [nf-2e26ff0a781b507d6e40a8f087be8d33-6ea65-r94v2] [603_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0001' to sub-workflow 'CallGenome'
[2026-06-05T13:59:50.541946Z] [nf-2e26ff0a781b507d6e40a8f087be8d33-6ea65-r94v2] [603_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0002' to sub-workflow 'CallGenome'
[2026-06-05T13:59:50.542126Z] [nf-2e26ff0a781b507d6e40a8f087be8d33-6ea65-r94v2] [603_1] [TaskManager] Launching command task: 'CallGenome+makeTmpDir' from sub-workflow 'CallGenome'
[2026-06-05T13:59:50.542214Z] [nf-2e26ff0a781b507d6e40a8f087be8d33-6ea65-r94v2] [603_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0002' to sub-workflow 'CallGenome'
[2026-06-05T13:59:50.542367Z] [nf-2e26ff0a781b507d6e40a8f087be8d33-6ea65-r94v2] [603_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0003' to sub-workflow 'CallGenome'
[2026-06-05T13:59:50.542690Z] [nf-2e26ff0a781b507d6e40a8f087be8d33-6ea65-r94v2] [603_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0003' to sub-workflow 'CallGenome'
[2026-06-05T13:59:50.543069Z] [nf-2e26ff0a781b507d6e40a8f087be8d33-6ea65-r94v2] [603_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0004' to sub-workflow 'CallGenome'
[2026-06-05T13:59:50.543211Z] [nf-2e26ff0a781b507d6e40a8f087be8d33-6ea65-r94v2] [603_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0004' to sub-workflow 'CallGenome'
[2026-06-05T13:59:50.543458Z] [nf-2e26ff0a781b507d6e40a8f087be8d33-6ea65-r94v2] [603_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0005' to sub-workflow 'CallGenome'
[2026-06-05T13:59:50.544204Z] [nf-2e26ff0a781b507d6e40a8f087be8d33-6ea65-r94v2] [603_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0005' to sub-workflow 'CallGenome'
[2026-06-05T13:59:50.545530Z] [nf-2e26ff0a781b507d6e40a8f087be8d33-6ea65-r94v2] [603_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0006' to sub-workflow 'CallGenome'
[2026-06-05T13:59:50.545599Z] [nf-2e26ff0a781b507d6e40a8f087be8d33-6ea65-r94v2] [603_1] [TaskRunner:CallGenome+makeTmpDir] Task initiated on local node
[2026-06-05T13:59:50.545970Z] [nf-2e26ff0a781b507d6e40a8f087be8d33-6ea65-r94v2] [603_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0006' to sub-workflow 'CallGenome'
[2026-06-05T13:59:50.546145Z] [nf-2e26ff0a781b507d6e40a8f087be8d33-6ea65-r94v2] [603_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0007' to sub-workflow 'CallGenome'
[2026-06-05T13:59:50.546217Z] [nf-2e26ff0a781b507d6e40a8f087be8d33-6ea65-r94v2] [603_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0007' to sub-workflow 'CallGenome'
[2026-06-05T13:59:50.546408Z] [nf-2e26ff0a781b507d6e40a8f087be8d33-6ea65-r94v2] [603_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0008' to sub-workflow 'CallGenome'
[2026-06-05T13:59:50.546477Z] [nf-2e26ff0a781b507d6e40a8f087be8d33-6ea65-r94v2] [603_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0008' to sub-workflow 'CallGenome'
[2026-06-05T13:59:50.546593Z] [nf-2e26ff0a781b507d6e40a8f087be8d33-6ea65-r94v2] [603_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0009' to sub-workflow 'CallGenome'
[2026-06-05T13:59:50.546661Z] [nf-2e26ff0a781b507d6e40a8f087be8d33-6ea65-r94v2] [603_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0009' to sub-workflow 'CallGenome'
[2026-06-05T13:59:50.546775Z] [nf-2e26ff0a781b507d6e40a8f087be8d33-6ea65-r94v2] [603_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0010' to sub-workflow 'CallGenome'
[2026-06-05T13:59:50.546840Z] [nf-2e26ff0a781b507d6e40a8f087be8d33-6ea65-r94v2] [603_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0010' to sub-workflow 'CallGenome'
[2026-06-05T13:59:50.546963Z] [nf-2e26ff0a781b507d6e40a8f087be8d33-6ea65-r94v2] [603_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0011' to sub-workflow 'CallGenome'
[2026-06-05T13:59:50.547030Z] [nf-2e26ff0a781b507d6e40a8f087be8d33-6ea65-r94v2] [603_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0011' to sub-workflow 'CallGenome'
[2026-06-05T13:59:50.547441Z] [nf-2e26ff0a781b507d6e40a8f087be8d33-6ea65-r94v2] [603_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_010_chr11_0000' to sub-workflow 'CallGenome'
[2026-06-05T13:59:50.547636Z] [nf-2e26ff0a781b507d6e40a8f087be8d33-6ea65-r94v2] [603_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_010_chr11_0000' to sub-workflow 'CallGenome'
[2026-06-05T13:59:50.547817Z] [nf-2e26ff0a781b507d6e40a8f087be8d33-6ea65-r94v2] [603_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_010_chr11_0001' to sub-workflow 'CallGenome'
[2026-06-05T13:59:50.548191Z] [nf-2e26ff0a781b507d6e40a8f087be8d33-6ea65-r94v2] [603_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_010_chr11_0001' to sub-workflow 'CallGenome'
[2026-06-05T13:59:50.548537Z] [nf-2e26ff0a781b507d6e40a8f087be8d33-6ea65-r94v2] [603_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_010_chr11_0002' to sub-workflow 'CallGenome'
[2026-06-05T13:59:50.548790Z] [nf-2e26ff0a781b507d6e40a8f087be8d33-6ea65-r94v2] [603_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_010_chr11_0002' to sub-workflow 'CallGenome'
[2026-06-05T13:59:50.549129Z] [nf-2e26ff0a781b507d6e40a8f087be8d33-6ea65-r94v2] [603_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_010_chr11_0003' to sub-workflow 'CallGenome'
[2026-06-05T13:59:50.549192Z] [nf-2e26ff0a781b507d6e40a8f087be8d33-6ea65-r94v2] [603_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_010_chr11_0003' to sub-workflow 'CallGenome'
[2026-06-05T13:59:50.549301Z] [nf-2e26ff0a781b507d6e40a8f087be8d33-6ea65-r94v2] [603_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_010_chr11_0004' to sub-workflow 'CallGenome'
[2026-06-05T13:59:50.549372Z] [nf-2e26ff0a781b507d6e40a8f087be8d33-6ea65-r94v2] [603_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_010_chr11_0004' to sub-workflow 'CallGenome'
[2026-06-05T13:59:50.549499Z] [nf-2e26ff0a781b507d6e40a8f087be8d33-6ea65-r94v2] [603_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_010_chr11_0005' to sub-workflow 'CallGenome'
[2026-06-05T13:59:50.549560Z] [nf-2e26ff0a781b507d6e40a8f087be8d33-6ea65-r94v2] [603_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_010_chr11_0005' to sub-workflow 'CallGenome'
[2026-06-05T13:59:50.549672Z] [nf-2e26ff0a781b507d6e40a8f087be8d33-6ea65-r94v2] [603_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_010_chr11_0006' to sub-workflow 'CallGenome'
[2026-06-05T13:59:50.549733Z] [nf-2e26ff0a781b507d6e40a8f087be8d33-6ea65-r94v2] [603_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_010_chr11_0006' to sub-workflow 'CallGenome'
[2026-06-05T13:59:50.549872Z] [nf-2e26ff0a781b507d6e40a8f087be8d33-6ea65-r94v2] [603_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_010_chr11_0007' to sub-workflow 'CallGenome'
[2026-06-05T13:59:50.549943Z] [nf-2e26ff0a781b507d6e40a8f087be8d33-6ea65-r94v2] [603_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_010_chr11_0007' to sub-workflow 'CallGenome'
[2026-06-05T13:59:50.550049Z] [nf-2e26ff0a781b507d6e40a8f087be8d33-6ea65-r94v2] [603_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_010_chr11_0008' to sub-workflow 'CallGenome'
[2026-06-05T13:59:50.550146Z] [nf-2e26ff0a781b507d6e40a8f087be8d33-6ea65-r94v2] [603_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_010_chr11_0008' to sub-workflow 'CallGenome'
[2026-06-05T13:59:50.550605Z] [nf-2e26ff0a781b507d6e40a8f087be8d33-6ea65-r94v2] [603_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_010_chr11_0009' to sub-workflow 'CallGenome'
[2026-06-05T13:59:50.550723Z] [nf-2e26ff0a781b507d6e40a8f087be8d33-6ea65-r94v2] [603_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_010_chr11_0009' to sub-workflow 'CallGenome'
[2026-06-05T13:59:50.550851Z] [nf-2e26ff0a781b507d6e40a8f087be8d33-6ea65-r94v2] [603_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_010_chr11_0010' to sub-workflow 'CallGenome'
[2026-06-05T13:59:50.550924Z] [nf-2e26ff0a781b507d6e40a8f087be8d33-6ea65-r94v2] [603_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_010_chr11_0010' to sub-workflow 'CallGenome'
[2026-06-05T13:59:50.551041Z] [nf-2e26ff0a781b507d6e40a8f087be8d33-6ea65-r94v2] [603_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_010_chr11_0011' to sub-workflow 'CallGenome'
[2026-06-05T13:59:50.551109Z] [nf-2e26ff0a781b507d6e40a8f087be8d33-6ea65-r94v2] [603_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_010_chr11_0011' to sub-workflow 'CallGenome'
[2026-06-05T13:59:50.551227Z] [nf-2e26ff0a781b507d6e40a8f087be8d33-6ea65-r94v2] [603_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_011_chr12_0000' to sub-workflow 'CallGenome'
[2026-06-05T13:59:50.551292Z] [nf-2e26ff0a781b507d6e40a8f087be8d33-6ea65-r94v2] [603_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_011_chr12_0000' to sub-workflow 'CallGenome'
[2026-06-05T13:59:50.551407Z] [nf-2e26ff0a781b507d6e40a8f087be8d33-6ea65-r94v2] [603_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_011_chr12_0001' to sub-workflow 'CallGenome'
[2026-06-05T13:59:50.551473Z] [nf-2e26ff0a781b507d6e40a8f087be8d33-6ea65-r94v2] [603_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_011_chr12_0001' to sub-workflow 'CallGenome'
[2026-06-05T13:59:50.551587Z] [nf-2e26ff0a781b507d6e40a8f087be8d33-6ea65-r94v2] [603_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_011_chr12_0002' to sub-workflow 'CallGenome'
[2026-06-05T13:59:50.551770Z] [nf-2e26ff0a781b507d6e40a8f087be8d33-6ea65-r94v2] [603_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_011_chr12_0002' to sub-workflow 'CallGenome'
[2026-06-05T13:59:50.552353Z] [nf-2e26ff0a781b507d6e40a8f087be8d33-6ea65-r94v2] [603_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_011_chr12_0003' to sub-workflow 'CallGenome'
[2026-06-05T13:59:50.552418Z] [nf-2e26ff0a781b507d6e40a8f087be8d33-6ea65-r94v2] [603_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_011_chr12_0003' to sub-workflow 'CallGenome'
[2026-06-05T13:59:50.552527Z] [nf-2e26ff0a781b507d6e40a8f087be8d33-6ea65-r94v2] [603_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_011_chr12_0004' to sub-workflow 'CallGenome'
[2026-06-05T13:59:50.552588Z] [nf-2e26ff0a781b507d6e40a8f087be8d33-6ea65-r94v2] [603_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_011_chr12_0004' to sub-workflow 'CallGenome'
[2026-06-05T13:59:50.552697Z] [nf-2e26ff0a781b507d6e40a8f087be8d33-6ea65-r94v2] [603_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_011_chr12_0005' to sub-workflow 'CallGenome'
[2026-06-05T13:59:50.552760Z] [nf-2e26ff0a781b507d6e40a8f087be8d33-6ea65-r94v2] [603_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_011_chr12_0005' to sub-workflow 'CallGenome'
[2026-06-05T13:59:50.552866Z] [nf-2e26ff0a781b507d6e40a8f087be8d33-6ea65-r94v2] [603_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_011_chr12_0006' to sub-workflow 'CallGenome'
[2026-06-05T13:59:50.552932Z] [nf-2e26ff0a781b507d6e40a8f087be8d33-6ea65-r94v2] [603_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_011_chr12_0006' to sub-workflow 'CallGenome'
[2026-06-05T13:59:50.553038Z] [nf-2e26ff0a781b507d6e40a8f087be8d33-6ea65-r94v2] [603_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_011_chr12_0007' to sub-workflow 'CallGenome'
[2026-06-05T13:59:50.553101Z] [nf-2e26ff0a781b507d6e40a8f087be8d33-6ea65-r94v2] [603_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_011_chr12_0007' to sub-workflow 'CallGenome'
[2026-06-05T13:59:50.553208Z] [nf-2e26ff0a781b507d6e40a8f087be8d33-6ea65-r94v2] [603_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_011_chr12_0008' to sub-workflow 'CallGenome'
[2026-06-05T13:59:50.553274Z] [nf-2e26ff0a781b507d6e40a8f087be8d33-6ea65-r94v2] [603_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_011_chr12_0008' to sub-workflow 'CallGenome'
[2026-06-05T13:59:50.553904Z] [nf-2e26ff0a781b507d6e40a8f087be8d33-6ea65-r94v2] [603_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_011_chr12_0009' to sub-workflow 'CallGenome'
[2026-06-05T13:59:50.554173Z] [nf-2e26ff0a781b507d6e40a8f087be8d33-6ea65-r94v2] [603_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_011_chr12_0009' to sub-workflow 'CallGenome'
[2026-06-05T13:59:50.554281Z] [nf-2e26ff0a781b507d6e40a8f087be8d33-6ea65-r94v2] [603_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_011_chr12_0010' to sub-workflow 'CallGenome'
[2026-06-05T13:59:50.554343Z] [nf-2e26ff0a781b507d6e40a8f087be8d33-6ea65-r94v2] [603_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_011_chr12_0010' to sub-workflow 'CallGenome'
[2026-06-05T13:59:50.568600Z] [nf-2e26ff0a781b507d6e40a8f087be8d33-6ea65-r94v2] [603_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_011_chr12_0011' to sub-workflow 'CallGenome'
[2026-06-05T13:59:50.569156Z] [nf-2e26ff0a781b507d6e40a8f087be8d33-6ea65-r94v2] [603_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_011_chr12_0011' to sub-workflow 'CallGenome'
[2026-06-05T13:59:50.569231Z] [nf-2e26ff0a781b507d6e40a8f087be8d33-6ea65-r94v2] [603_1] [WorkflowRunner] Adding command task 'CallGenome+completedAllGenomeSegments' to sub-workflow 'CallGenome'
[2026-06-05T13:59:50.569397Z] [nf-2e26ff0a781b507d6e40a8f087be8d33-6ea65-r94v2] [603_1] [WorkflowRunner] Adding command task 'CallGenome+SNV_concat_vcf' to sub-workflow 'CallGenome'
[2026-06-05T13:59:50.569466Z] [nf-2e26ff0a781b507d6e40a8f087be8d33-6ea65-r94v2] [603_1] [WorkflowRunner] Adding command task 'CallGenome+SNV_index_vcf' to sub-workflow 'CallGenome'
[2026-06-05T13:59:50.569557Z] [nf-2e26ff0a781b507d6e40a8f087be8d33-6ea65-r94v2] [603_1] [WorkflowRunner] Adding command task 'CallGenome+Indel_concat_vcf' to sub-workflow 'CallGenome'
[2026-06-05T13:59:50.569624Z] [nf-2e26ff0a781b507d6e40a8f087be8d33-6ea65-r94v2] [603_1] [WorkflowRunner] Adding command task 'CallGenome+Indel_index_vcf' to sub-workflow 'CallGenome'
[2026-06-05T13:59:50.569733Z] [nf-2e26ff0a781b507d6e40a8f087be8d33-6ea65-r94v2] [603_1] [WorkflowRunner] Adding command task 'CallGenome+mergeRunStats' to sub-workflow 'CallGenome'
[2026-06-05T13:59:50.569804Z] [nf-2e26ff0a781b507d6e40a8f087be8d33-6ea65-r94v2] [603_1] [WorkflowRunner] Adding command task 'CallGenome+removeTmpDir' to sub-workflow 'CallGenome'
[2026-06-05T13:59:50.569847Z] [nf-2e26ff0a781b507d6e40a8f087be8d33-6ea65-r94v2] [603_1] [TaskRunner:CallGenome] Finished task specification for sub-workflow
[2026-06-05T13:59:50.577981Z] [nf-2e26ff0a781b507d6e40a8f087be8d33-6ea65-r94v2] [603_1] [TaskManager] Completed command task: 'CallGenome+makeTmpDir' launched from sub-workflow 'CallGenome'
[2026-06-05T13:59:50.578577Z] [nf-2e26ff0a781b507d6e40a8f087be8d33-6ea65-r94v2] [603_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0010' from sub-workflow 'CallGenome'
[2026-06-05T13:59:50.578863Z] [nf-2e26ff0a781b507d6e40a8f087be8d33-6ea65-r94v2] [603_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0010' from sub-workflow 'CallGenome'
[2026-06-05T13:59:50.579223Z] [nf-2e26ff0a781b507d6e40a8f087be8d33-6ea65-r94v2] [603_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0009' from sub-workflow 'CallGenome'
[2026-06-05T13:59:50.580240Z] [nf-2e26ff0a781b507d6e40a8f087be8d33-6ea65-r94v2] [603_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0011' from sub-workflow 'CallGenome'
[2026-06-05T13:59:50.580882Z] [nf-2e26ff0a781b507d6e40a8f087be8d33-6ea65-r94v2] [603_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0007' from sub-workflow 'CallGenome'
[2026-06-05T13:59:50.583995Z] [nf-2e26ff0a781b507d6e40a8f087be8d33-6ea65-r94v2] [603_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_011_chr12_0010] Task initiated on local node
[2026-06-05T13:59:50.584592Z] [nf-2e26ff0a781b507d6e40a8f087be8d33-6ea65-r94v2] [603_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0009' from sub-workflow 'CallGenome'
[2026-06-05T13:59:50.585297Z] [nf-2e26ff0a781b507d6e40a8f087be8d33-6ea65-r94v2] [603_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_010_chr11_0010] Task initiated on local node
[2026-06-05T13:59:50.585653Z] [nf-2e26ff0a781b507d6e40a8f087be8d33-6ea65-r94v2] [603_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0002' from sub-workflow 'CallGenome'
[2026-06-05T13:59:50.586755Z] [nf-2e26ff0a781b507d6e40a8f087be8d33-6ea65-r94v2] [603_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0007' from sub-workflow 'CallGenome'
[2026-06-05T13:59:50.592038Z] [nf-2e26ff0a781b507d6e40a8f087be8d33-6ea65-r94v2] [603_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_011_chr12_0009] Task initiated on local node
[2026-06-05T13:59:50.592685Z] [nf-2e26ff0a781b507d6e40a8f087be8d33-6ea65-r94v2] [603_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_011_chr12_0007] Task initiated on local node
[2026-06-05T13:59:50.593179Z] [nf-2e26ff0a781b507d6e40a8f087be8d33-6ea65-r94v2] [603_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0011] Task initiated on local node
[2026-06-05T13:59:50.596546Z] [nf-2e26ff0a781b507d6e40a8f087be8d33-6ea65-r94v2] [603_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_011_chr12_0002] Task initiated on local node
[2026-06-05T13:59:50.598572Z] [nf-2e26ff0a781b507d6e40a8f087be8d33-6ea65-r94v2] [603_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_010_chr11_0007] Task initiated on local node
[2026-06-05T13:59:50.599901Z] [nf-2e26ff0a781b507d6e40a8f087be8d33-6ea65-r94v2] [603_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_010_chr11_0009] Task initiated on local node
[2026-06-05T13:59:50.656603Z] [nf-2e26ff0a781b507d6e40a8f087be8d33-6ea65-r94v2] [603_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0010' launched from sub-workflow 'CallGenome'
[2026-06-05T13:59:50.657400Z] [nf-2e26ff0a781b507d6e40a8f087be8d33-6ea65-r94v2] [603_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0001' from sub-workflow 'CallGenome'
[2026-06-05T13:59:50.661338Z] [nf-2e26ff0a781b507d6e40a8f087be8d33-6ea65-r94v2] [603_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0001] Task initiated on local node
[2026-06-05T13:59:50.771946Z] [nf-2e26ff0a781b507d6e40a8f087be8d33-6ea65-r94v2] [603_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0001' launched from sub-workflow 'CallGenome'
[2026-06-05T13:59:50.772702Z] [nf-2e26ff0a781b507d6e40a8f087be8d33-6ea65-r94v2] [603_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0001' from sub-workflow 'CallGenome'
[2026-06-05T13:59:50.775243Z] [nf-2e26ff0a781b507d6e40a8f087be8d33-6ea65-r94v2] [603_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0001] Task initiated on local node
[2026-06-05T13:59:50.836849Z] [nf-2e26ff0a781b507d6e40a8f087be8d33-6ea65-r94v2] [603_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0001' launched from sub-workflow 'CallGenome'
[2026-06-05T13:59:50.837555Z] [nf-2e26ff0a781b507d6e40a8f087be8d33-6ea65-r94v2] [603_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0006' from sub-workflow 'CallGenome'
[2026-06-05T13:59:50.840376Z] [nf-2e26ff0a781b507d6e40a8f087be8d33-6ea65-r94v2] [603_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0006] Task initiated on local node
[2026-06-05T13:59:51.202077Z] [nf-2e26ff0a781b507d6e40a8f087be8d33-6ea65-r94v2] [603_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0009' launched from sub-workflow 'CallGenome'
[2026-06-05T13:59:51.203256Z] [nf-2e26ff0a781b507d6e40a8f087be8d33-6ea65-r94v2] [603_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0002' from sub-workflow 'CallGenome'
[2026-06-05T13:59:51.206590Z] [nf-2e26ff0a781b507d6e40a8f087be8d33-6ea65-r94v2] [603_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0002] Task initiated on local node
[2026-06-05T13:59:51.317853Z] [nf-2e26ff0a781b507d6e40a8f087be8d33-6ea65-r94v2] [603_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0002' launched from sub-workflow 'CallGenome'
[2026-06-05T13:59:51.318777Z] [nf-2e26ff0a781b507d6e40a8f087be8d33-6ea65-r94v2] [603_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0002' from sub-workflow 'CallGenome'
[2026-06-05T13:59:51.322195Z] [nf-2e26ff0a781b507d6e40a8f087be8d33-6ea65-r94v2] [603_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0002] Task initiated on local node
[2026-06-05T13:59:51.383144Z] [nf-2e26ff0a781b507d6e40a8f087be8d33-6ea65-r94v2] [603_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0002' launched from sub-workflow 'CallGenome'
[2026-06-05T13:59:51.384057Z] [nf-2e26ff0a781b507d6e40a8f087be8d33-6ea65-r94v2] [603_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0004' from sub-workflow 'CallGenome'
[2026-06-05T13:59:51.387542Z] [nf-2e26ff0a781b507d6e40a8f087be8d33-6ea65-r94v2] [603_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_010_chr11_0004] Task initiated on local node
[2026-06-05T13:59:51.498424Z] [nf-2e26ff0a781b507d6e40a8f087be8d33-6ea65-r94v2] [603_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0006' launched from sub-workflow 'CallGenome'
[2026-06-05T13:59:51.499313Z] [nf-2e26ff0a781b507d6e40a8f087be8d33-6ea65-r94v2] [603_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0011' from sub-workflow 'CallGenome'
[2026-06-05T13:59:51.502828Z] [nf-2e26ff0a781b507d6e40a8f087be8d33-6ea65-r94v2] [603_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_010_chr11_0011] Task initiated on local node
[2026-06-05T13:59:51.814493Z] [nf-2e26ff0a781b507d6e40a8f087be8d33-6ea65-r94v2] [603_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0007' launched from sub-workflow 'CallGenome'
[2026-06-05T13:59:51.814588Z] [nf-2e26ff0a781b507d6e40a8f087be8d33-6ea65-r94v2] [603_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0007' launched from sub-workflow 'CallGenome'
[2026-06-05T13:59:51.815365Z] [nf-2e26ff0a781b507d6e40a8f087be8d33-6ea65-r94v2] [603_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0010' from sub-workflow 'CallGenome'
[2026-06-05T13:59:51.815983Z] [nf-2e26ff0a781b507d6e40a8f087be8d33-6ea65-r94v2] [603_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0008' from sub-workflow 'CallGenome'
[2026-06-05T13:59:51.819660Z] [nf-2e26ff0a781b507d6e40a8f087be8d33-6ea65-r94v2] [603_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_011_chr12_0010] Task initiated on local node
[2026-06-05T13:59:51.820801Z] [nf-2e26ff0a781b507d6e40a8f087be8d33-6ea65-r94v2] [603_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0008] Task initiated on local node
[2026-06-05T13:59:51.882611Z] [nf-2e26ff0a781b507d6e40a8f087be8d33-6ea65-r94v2] [603_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0010' launched from sub-workflow 'CallGenome'
[2026-06-05T13:59:51.883540Z] [nf-2e26ff0a781b507d6e40a8f087be8d33-6ea65-r94v2] [603_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0000' from sub-workflow 'CallGenome'
[2026-06-05T13:59:51.887346Z] [nf-2e26ff0a781b507d6e40a8f087be8d33-6ea65-r94v2] [603_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_011_chr12_0000] Task initiated on local node
[2026-06-05T13:59:52.349139Z] [nf-2e26ff0a781b507d6e40a8f087be8d33-6ea65-r94v2] [603_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0002' launched from sub-workflow 'CallGenome'
[2026-06-05T13:59:52.349219Z] [nf-2e26ff0a781b507d6e40a8f087be8d33-6ea65-r94v2] [603_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0011' launched from sub-workflow 'CallGenome'
[2026-06-05T13:59:52.350041Z] [nf-2e26ff0a781b507d6e40a8f087be8d33-6ea65-r94v2] [603_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0007' from sub-workflow 'CallGenome'
[2026-06-05T13:59:52.350396Z] [nf-2e26ff0a781b507d6e40a8f087be8d33-6ea65-r94v2] [603_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0004' from sub-workflow 'CallGenome'
[2026-06-05T13:59:52.354182Z] [nf-2e26ff0a781b507d6e40a8f087be8d33-6ea65-r94v2] [603_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_010_chr11_0007] Task initiated on local node
[2026-06-05T13:59:52.355396Z] [nf-2e26ff0a781b507d6e40a8f087be8d33-6ea65-r94v2] [603_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_011_chr12_0004] Task initiated on local node
[2026-06-05T13:59:52.415172Z] [nf-2e26ff0a781b507d6e40a8f087be8d33-6ea65-r94v2] [603_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0007' launched from sub-workflow 'CallGenome'
[2026-06-05T13:59:52.416077Z] [nf-2e26ff0a781b507d6e40a8f087be8d33-6ea65-r94v2] [603_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0003' from sub-workflow 'CallGenome'
[2026-06-05T13:59:52.419844Z] [nf-2e26ff0a781b507d6e40a8f087be8d33-6ea65-r94v2] [603_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0003] Task initiated on local node
[2026-06-05T13:59:52.480917Z] [nf-2e26ff0a781b507d6e40a8f087be8d33-6ea65-r94v2] [603_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0003' launched from sub-workflow 'CallGenome'
[2026-06-05T13:59:52.481829Z] [nf-2e26ff0a781b507d6e40a8f087be8d33-6ea65-r94v2] [603_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0006' from sub-workflow 'CallGenome'
[2026-06-05T13:59:52.485337Z] [nf-2e26ff0a781b507d6e40a8f087be8d33-6ea65-r94v2] [603_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_010_chr11_0006] Task initiated on local node
[2026-06-05T13:59:52.514567Z] [nf-2e26ff0a781b507d6e40a8f087be8d33-6ea65-r94v2] [603_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0009' launched from sub-workflow 'CallGenome'
[2026-06-05T13:59:52.515459Z] [nf-2e26ff0a781b507d6e40a8f087be8d33-6ea65-r94v2] [603_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0001' from sub-workflow 'CallGenome'
[2026-06-05T13:59:52.519030Z] [nf-2e26ff0a781b507d6e40a8f087be8d33-6ea65-r94v2] [603_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_011_chr12_0001] Task initiated on local node
[2026-06-05T13:59:52.547911Z] [nf-2e26ff0a781b507d6e40a8f087be8d33-6ea65-r94v2] [603_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0010' launched from sub-workflow 'CallGenome'
[2026-06-05T13:59:52.548740Z] [nf-2e26ff0a781b507d6e40a8f087be8d33-6ea65-r94v2] [603_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0010' from sub-workflow 'CallGenome'
[2026-06-05T13:59:52.551949Z] [nf-2e26ff0a781b507d6e40a8f087be8d33-6ea65-r94v2] [603_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_010_chr11_0010] Task initiated on local node
[2026-06-05T13:59:52.614346Z] [nf-2e26ff0a781b507d6e40a8f087be8d33-6ea65-r94v2] [603_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0010' launched from sub-workflow 'CallGenome'
[2026-06-05T13:59:52.615179Z] [nf-2e26ff0a781b507d6e40a8f087be8d33-6ea65-r94v2] [603_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0009' from sub-workflow 'CallGenome'
[2026-06-05T13:59:52.618627Z] [nf-2e26ff0a781b507d6e40a8f087be8d33-6ea65-r94v2] [603_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_010_chr11_0009] Task initiated on local node
[2026-06-05T13:59:52.679978Z] [nf-2e26ff0a781b507d6e40a8f087be8d33-6ea65-r94v2] [603_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0009' launched from sub-workflow 'CallGenome'
[2026-06-05T13:59:52.680947Z] [nf-2e26ff0a781b507d6e40a8f087be8d33-6ea65-r94v2] [603_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0001' from sub-workflow 'CallGenome'
[2026-06-05T13:59:52.684119Z] [nf-2e26ff0a781b507d6e40a8f087be8d33-6ea65-r94v2] [603_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_010_chr11_0001] Task initiated on local node
[2026-06-05T13:59:52.795561Z] [nf-2e26ff0a781b507d6e40a8f087be8d33-6ea65-r94v2] [603_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0004' launched from sub-workflow 'CallGenome'
[2026-06-05T13:59:52.796452Z] [nf-2e26ff0a781b507d6e40a8f087be8d33-6ea65-r94v2] [603_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0004' from sub-workflow 'CallGenome'
[2026-06-05T13:59:52.799930Z] [nf-2e26ff0a781b507d6e40a8f087be8d33-6ea65-r94v2] [603_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_010_chr11_0004] Task initiated on local node
[2026-06-05T13:59:52.860760Z] [nf-2e26ff0a781b507d6e40a8f087be8d33-6ea65-r94v2] [603_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0004' launched from sub-workflow 'CallGenome'
[2026-06-05T13:59:52.861626Z] [nf-2e26ff0a781b507d6e40a8f087be8d33-6ea65-r94v2] [603_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0007' from sub-workflow 'CallGenome'
[2026-06-05T13:59:52.865501Z] [nf-2e26ff0a781b507d6e40a8f087be8d33-6ea65-r94v2] [603_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_011_chr12_0007] Task initiated on local node
[2026-06-05T13:59:52.926453Z] [nf-2e26ff0a781b507d6e40a8f087be8d33-6ea65-r94v2] [603_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0007' launched from sub-workflow 'CallGenome'
[2026-06-05T13:59:52.927263Z] [nf-2e26ff0a781b507d6e40a8f087be8d33-6ea65-r94v2] [603_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0005' from sub-workflow 'CallGenome'
[2026-06-05T13:59:52.930965Z] [nf-2e26ff0a781b507d6e40a8f087be8d33-6ea65-r94v2] [603_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0005] Task initiated on local node
[2026-06-05T13:59:52.991922Z] [nf-2e26ff0a781b507d6e40a8f087be8d33-6ea65-r94v2] [603_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0005' launched from sub-workflow 'CallGenome'
[2026-06-05T13:59:52.992686Z] [nf-2e26ff0a781b507d6e40a8f087be8d33-6ea65-r94v2] [603_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0011' from sub-workflow 'CallGenome'
[2026-06-05T13:59:52.996715Z] [nf-2e26ff0a781b507d6e40a8f087be8d33-6ea65-r94v2] [603_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_011_chr12_0011] Task initiated on local node
[2026-06-05T13:59:53.057632Z] [nf-2e26ff0a781b507d6e40a8f087be8d33-6ea65-r94v2] [603_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0011' launched from sub-workflow 'CallGenome'
[2026-06-05T13:59:53.058426Z] [nf-2e26ff0a781b507d6e40a8f087be8d33-6ea65-r94v2] [603_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0011' from sub-workflow 'CallGenome'
[2026-06-05T13:59:53.061858Z] [nf-2e26ff0a781b507d6e40a8f087be8d33-6ea65-r94v2] [603_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_011_chr12_0011] Task initiated on local node
[2026-06-05T13:59:53.122899Z] [nf-2e26ff0a781b507d6e40a8f087be8d33-6ea65-r94v2] [603_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0011' launched from sub-workflow 'CallGenome'
[2026-06-05T13:59:53.123736Z] [nf-2e26ff0a781b507d6e40a8f087be8d33-6ea65-r94v2] [603_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0005' from sub-workflow 'CallGenome'
[2026-06-05T13:59:53.127429Z] [nf-2e26ff0a781b507d6e40a8f087be8d33-6ea65-r94v2] [603_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0005] Task initiated on local node
[2026-06-05T13:59:53.188482Z] [nf-2e26ff0a781b507d6e40a8f087be8d33-6ea65-r94v2] [603_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0005' launched from sub-workflow 'CallGenome'
[2026-06-05T13:59:53.189260Z] [nf-2e26ff0a781b507d6e40a8f087be8d33-6ea65-r94v2] [603_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0008' from sub-workflow 'CallGenome'
[2026-06-05T13:59:53.192787Z] [nf-2e26ff0a781b507d6e40a8f087be8d33-6ea65-r94v2] [603_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_011_chr12_0008] Task initiated on local node
[2026-06-05T13:59:53.454759Z] [nf-2e26ff0a781b507d6e40a8f087be8d33-6ea65-r94v2] [603_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0011' launched from sub-workflow 'CallGenome'
[2026-06-05T13:59:53.455521Z] [nf-2e26ff0a781b507d6e40a8f087be8d33-6ea65-r94v2] [603_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0005' from sub-workflow 'CallGenome'
[2026-06-05T13:59:53.459248Z] [nf-2e26ff0a781b507d6e40a8f087be8d33-6ea65-r94v2] [603_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_010_chr11_0005] Task initiated on local node
[2026-06-05T13:59:54.673690Z] [nf-2e26ff0a781b507d6e40a8f087be8d33-6ea65-r94v2] [603_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0001' launched from sub-workflow 'CallGenome'
[2026-06-05T13:59:54.674469Z] [nf-2e26ff0a781b507d6e40a8f087be8d33-6ea65-r94v2] [603_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0003' from sub-workflow 'CallGenome'
[2026-06-05T13:59:54.678303Z] [nf-2e26ff0a781b507d6e40a8f087be8d33-6ea65-r94v2] [603_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_011_chr12_0003] Task initiated on local node
[2026-06-05T13:59:54.740656Z] [nf-2e26ff0a781b507d6e40a8f087be8d33-6ea65-r94v2] [603_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0008' launched from sub-workflow 'CallGenome'
[2026-06-05T13:59:54.741476Z] [nf-2e26ff0a781b507d6e40a8f087be8d33-6ea65-r94v2] [603_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0007' from sub-workflow 'CallGenome'
[2026-06-05T13:59:54.745106Z] [nf-2e26ff0a781b507d6e40a8f087be8d33-6ea65-r94v2] [603_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0007] Task initiated on local node
[2026-06-05T13:59:54.906527Z] [nf-2e26ff0a781b507d6e40a8f087be8d33-6ea65-r94v2] [603_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0000' launched from sub-workflow 'CallGenome'
[2026-06-05T13:59:54.907291Z] [nf-2e26ff0a781b507d6e40a8f087be8d33-6ea65-r94v2] [603_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0000' from sub-workflow 'CallGenome'
[2026-06-05T13:59:54.910594Z] [nf-2e26ff0a781b507d6e40a8f087be8d33-6ea65-r94v2] [603_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_011_chr12_0000] Task initiated on local node
[2026-06-05T13:59:54.915186Z] [nf-2e26ff0a781b507d6e40a8f087be8d33-6ea65-r94v2] [603_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0001' launched from sub-workflow 'CallGenome'
[2026-06-05T13:59:54.915850Z] [nf-2e26ff0a781b507d6e40a8f087be8d33-6ea65-r94v2] [603_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0000' from sub-workflow 'CallGenome'
[2026-06-05T13:59:54.919186Z] [nf-2e26ff0a781b507d6e40a8f087be8d33-6ea65-r94v2] [603_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_010_chr11_0000] Task initiated on local node
[2026-06-05T13:59:54.948292Z] [nf-2e26ff0a781b507d6e40a8f087be8d33-6ea65-r94v2] [603_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0000' launched from sub-workflow 'CallGenome'
[2026-06-05T13:59:54.949065Z] [nf-2e26ff0a781b507d6e40a8f087be8d33-6ea65-r94v2] [603_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0010' from sub-workflow 'CallGenome'
[2026-06-05T13:59:54.952621Z] [nf-2e26ff0a781b507d6e40a8f087be8d33-6ea65-r94v2] [603_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0010] Task initiated on local node
[2026-06-05T13:59:54.981572Z] [nf-2e26ff0a781b507d6e40a8f087be8d33-6ea65-r94v2] [603_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0008' launched from sub-workflow 'CallGenome'
[2026-06-05T13:59:54.982250Z] [nf-2e26ff0a781b507d6e40a8f087be8d33-6ea65-r94v2] [603_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0006' from sub-workflow 'CallGenome'
[2026-06-05T13:59:54.985768Z] [nf-2e26ff0a781b507d6e40a8f087be8d33-6ea65-r94v2] [603_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_011_chr12_0006] Task initiated on local node
[2026-06-05T13:59:55.497885Z] [nf-2e26ff0a781b507d6e40a8f087be8d33-6ea65-r94v2] [603_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0004' launched from sub-workflow 'CallGenome'
[2026-06-05T13:59:55.498566Z] [nf-2e26ff0a781b507d6e40a8f087be8d33-6ea65-r94v2] [603_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0003' from sub-workflow 'CallGenome'
[2026-06-05T13:59:55.501946Z] [nf-2e26ff0a781b507d6e40a8f087be8d33-6ea65-r94v2] [603_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_010_chr11_0003] Task initiated on local node
[2026-06-05T13:59:55.713200Z] [nf-2e26ff0a781b507d6e40a8f087be8d33-6ea65-r94v2] [603_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0006' launched from sub-workflow 'CallGenome'
[2026-06-05T13:59:55.713918Z] [nf-2e26ff0a781b507d6e40a8f087be8d33-6ea65-r94v2] [603_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0000' from sub-workflow 'CallGenome'
[2026-06-05T13:59:55.717267Z] [nf-2e26ff0a781b507d6e40a8f087be8d33-6ea65-r94v2] [603_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0000] Task initiated on local node
[2026-06-05T13:59:55.778544Z] [nf-2e26ff0a781b507d6e40a8f087be8d33-6ea65-r94v2] [603_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0000' launched from sub-workflow 'CallGenome'
[2026-06-05T13:59:55.778637Z] [nf-2e26ff0a781b507d6e40a8f087be8d33-6ea65-r94v2] [603_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0003' launched from sub-workflow 'CallGenome'
[2026-06-05T13:59:55.779287Z] [nf-2e26ff0a781b507d6e40a8f087be8d33-6ea65-r94v2] [603_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0003' from sub-workflow 'CallGenome'
[2026-06-05T13:59:55.779932Z] [nf-2e26ff0a781b507d6e40a8f087be8d33-6ea65-r94v2] [603_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0008' from sub-workflow 'CallGenome'
[2026-06-05T13:59:55.783601Z] [nf-2e26ff0a781b507d6e40a8f087be8d33-6ea65-r94v2] [603_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_011_chr12_0003] Task initiated on local node
[2026-06-05T13:59:55.784605Z] [nf-2e26ff0a781b507d6e40a8f087be8d33-6ea65-r94v2] [603_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0008] Task initiated on local node
[2026-06-05T13:59:55.846616Z] [nf-2e26ff0a781b507d6e40a8f087be8d33-6ea65-r94v2] [603_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0008' launched from sub-workflow 'CallGenome'
[2026-06-05T13:59:55.846699Z] [nf-2e26ff0a781b507d6e40a8f087be8d33-6ea65-r94v2] [603_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0003' launched from sub-workflow 'CallGenome'
[2026-06-05T13:59:55.847330Z] [nf-2e26ff0a781b507d6e40a8f087be8d33-6ea65-r94v2] [603_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0006' from sub-workflow 'CallGenome'
[2026-06-05T13:59:55.847951Z] [nf-2e26ff0a781b507d6e40a8f087be8d33-6ea65-r94v2] [603_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0006' from sub-workflow 'CallGenome'
[2026-06-05T13:59:55.851671Z] [nf-2e26ff0a781b507d6e40a8f087be8d33-6ea65-r94v2] [603_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_010_chr11_0006] Task initiated on local node
[2026-06-05T13:59:55.852716Z] [nf-2e26ff0a781b507d6e40a8f087be8d33-6ea65-r94v2] [603_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0006] Task initiated on local node
[2026-06-05T13:59:55.914081Z] [nf-2e26ff0a781b507d6e40a8f087be8d33-6ea65-r94v2] [603_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0006' launched from sub-workflow 'CallGenome'
[2026-06-05T13:59:55.914163Z] [nf-2e26ff0a781b507d6e40a8f087be8d33-6ea65-r94v2] [603_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0006' launched from sub-workflow 'CallGenome'
[2026-06-05T13:59:55.914753Z] [nf-2e26ff0a781b507d6e40a8f087be8d33-6ea65-r94v2] [603_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0008' from sub-workflow 'CallGenome'
[2026-06-05T13:59:55.915284Z] [nf-2e26ff0a781b507d6e40a8f087be8d33-6ea65-r94v2] [603_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0009' from sub-workflow 'CallGenome'
[2026-06-05T13:59:55.918752Z] [nf-2e26ff0a781b507d6e40a8f087be8d33-6ea65-r94v2] [603_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_011_chr12_0009] Task initiated on local node
[2026-06-05T13:59:55.919810Z] [nf-2e26ff0a781b507d6e40a8f087be8d33-6ea65-r94v2] [603_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_011_chr12_0008] Task initiated on local node
[2026-06-05T13:59:55.981899Z] [nf-2e26ff0a781b507d6e40a8f087be8d33-6ea65-r94v2] [603_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0008' launched from sub-workflow 'CallGenome'
[2026-06-05T13:59:55.981986Z] [nf-2e26ff0a781b507d6e40a8f087be8d33-6ea65-r94v2] [603_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0009' launched from sub-workflow 'CallGenome'
[2026-06-05T13:59:55.982590Z] [nf-2e26ff0a781b507d6e40a8f087be8d33-6ea65-r94v2] [603_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0002' from sub-workflow 'CallGenome'
[2026-06-05T13:59:55.983080Z] [nf-2e26ff0a781b507d6e40a8f087be8d33-6ea65-r94v2] [603_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0008' from sub-workflow 'CallGenome'
[2026-06-05T13:59:55.986789Z] [nf-2e26ff0a781b507d6e40a8f087be8d33-6ea65-r94v2] [603_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_011_chr12_0002] Task initiated on local node
[2026-06-05T13:59:55.987728Z] [nf-2e26ff0a781b507d6e40a8f087be8d33-6ea65-r94v2] [603_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_010_chr11_0008] Task initiated on local node
[2026-06-05T13:59:56.049283Z] [nf-2e26ff0a781b507d6e40a8f087be8d33-6ea65-r94v2] [603_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0002' launched from sub-workflow 'CallGenome'
[2026-06-05T13:59:56.049939Z] [nf-2e26ff0a781b507d6e40a8f087be8d33-6ea65-r94v2] [603_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0001' from sub-workflow 'CallGenome'
[2026-06-05T13:59:56.053081Z] [nf-2e26ff0a781b507d6e40a8f087be8d33-6ea65-r94v2] [603_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_011_chr12_0001] Task initiated on local node
[2026-06-05T13:59:56.114307Z] [nf-2e26ff0a781b507d6e40a8f087be8d33-6ea65-r94v2] [603_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0001' launched from sub-workflow 'CallGenome'
[2026-06-05T13:59:56.114940Z] [nf-2e26ff0a781b507d6e40a8f087be8d33-6ea65-r94v2] [603_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0009' from sub-workflow 'CallGenome'
[2026-06-05T13:59:56.118395Z] [nf-2e26ff0a781b507d6e40a8f087be8d33-6ea65-r94v2] [603_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0009] Task initiated on local node
[2026-06-05T13:59:56.380357Z] [nf-2e26ff0a781b507d6e40a8f087be8d33-6ea65-r94v2] [603_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0007' launched from sub-workflow 'CallGenome'
[2026-06-05T13:59:56.381052Z] [nf-2e26ff0a781b507d6e40a8f087be8d33-6ea65-r94v2] [603_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0007' from sub-workflow 'CallGenome'
[2026-06-05T13:59:56.384157Z] [nf-2e26ff0a781b507d6e40a8f087be8d33-6ea65-r94v2] [603_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0007] Task initiated on local node
[2026-06-05T13:59:56.413333Z] [nf-2e26ff0a781b507d6e40a8f087be8d33-6ea65-r94v2] [603_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0007' launched from sub-workflow 'CallGenome'
[2026-06-05T13:59:56.413891Z] [nf-2e26ff0a781b507d6e40a8f087be8d33-6ea65-r94v2] [603_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0003' from sub-workflow 'CallGenome'
[2026-06-05T13:59:56.416886Z] [nf-2e26ff0a781b507d6e40a8f087be8d33-6ea65-r94v2] [603_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0003] Task initiated on local node
[2026-06-05T13:59:56.447608Z] [nf-2e26ff0a781b507d6e40a8f087be8d33-6ea65-r94v2] [603_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0006' launched from sub-workflow 'CallGenome'
[2026-06-05T13:59:56.448209Z] [nf-2e26ff0a781b507d6e40a8f087be8d33-6ea65-r94v2] [603_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0001' from sub-workflow 'CallGenome'
[2026-06-05T13:59:56.448797Z] [nf-2e26ff0a781b507d6e40a8f087be8d33-6ea65-r94v2] [603_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0003' launched from sub-workflow 'CallGenome'
[2026-06-05T13:59:56.451059Z] [nf-2e26ff0a781b507d6e40a8f087be8d33-6ea65-r94v2] [603_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0006' from sub-workflow 'CallGenome'
[2026-06-05T13:59:56.451652Z] [nf-2e26ff0a781b507d6e40a8f087be8d33-6ea65-r94v2] [603_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_010_chr11_0001] Task initiated on local node
[2026-06-05T13:59:56.454646Z] [nf-2e26ff0a781b507d6e40a8f087be8d33-6ea65-r94v2] [603_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_011_chr12_0006] Task initiated on local node
[2026-06-05T13:59:56.483820Z] [nf-2e26ff0a781b507d6e40a8f087be8d33-6ea65-r94v2] [603_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0001' launched from sub-workflow 'CallGenome'
[2026-06-05T13:59:56.484381Z] [nf-2e26ff0a781b507d6e40a8f087be8d33-6ea65-r94v2] [603_1] [TaskManager] Launching command task: 'CallGenome+fixVcfHeader_chromId_009_chr10_0000' from sub-workflow 'CallGenome'
[2026-06-05T13:59:56.487575Z] [nf-2e26ff0a781b507d6e40a8f087be8d33-6ea65-r94v2] [603_1] [TaskRunner:CallGenome+fixVcfHeader_chromId_009_chr10_0000] Task initiated on local node
[2026-06-05T13:59:56.488534Z] [nf-2e26ff0a781b507d6e40a8f087be8d33-6ea65-r94v2] [603_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0006' launched from sub-workflow 'CallGenome'
[2026-06-05T13:59:56.489114Z] [nf-2e26ff0a781b507d6e40a8f087be8d33-6ea65-r94v2] [603_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0004' from sub-workflow 'CallGenome'
[2026-06-05T13:59:56.492407Z] [nf-2e26ff0a781b507d6e40a8f087be8d33-6ea65-r94v2] [603_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_011_chr12_0004] Task initiated on local node
[2026-06-05T13:59:56.521300Z] [nf-2e26ff0a781b507d6e40a8f087be8d33-6ea65-r94v2] [603_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0004' launched from sub-workflow 'CallGenome'
[2026-06-05T13:59:56.521876Z] [nf-2e26ff0a781b507d6e40a8f087be8d33-6ea65-r94v2] [603_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0002' from sub-workflow 'CallGenome'
[2026-06-05T13:59:56.525067Z] [nf-2e26ff0a781b507d6e40a8f087be8d33-6ea65-r94v2] [603_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_010_chr11_0002] Task initiated on local node
[2026-06-05T13:59:56.538011Z] [nf-2e26ff0a781b507d6e40a8f087be8d33-6ea65-r94v2] [603_1] [TaskManager] Completed command task: 'CallGenome+fixVcfHeader_chromId_009_chr10_0000' launched from sub-workflow 'CallGenome'
[2026-06-05T13:59:56.538554Z] [nf-2e26ff0a781b507d6e40a8f087be8d33-6ea65-r94v2] [603_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0000' from sub-workflow 'CallGenome'
[2026-06-05T13:59:56.541924Z] [nf-2e26ff0a781b507d6e40a8f087be8d33-6ea65-r94v2] [603_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0000] Task initiated on local node
[2026-06-05T13:59:56.603019Z] [nf-2e26ff0a781b507d6e40a8f087be8d33-6ea65-r94v2] [603_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0000' launched from sub-workflow 'CallGenome'
[2026-06-05T13:59:56.603109Z] [nf-2e26ff0a781b507d6e40a8f087be8d33-6ea65-r94v2] [603_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0003' launched from sub-workflow 'CallGenome'
[2026-06-05T13:59:56.603638Z] [nf-2e26ff0a781b507d6e40a8f087be8d33-6ea65-r94v2] [603_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0011' from sub-workflow 'CallGenome'
[2026-06-05T13:59:56.605690Z] [nf-2e26ff0a781b507d6e40a8f087be8d33-6ea65-r94v2] [603_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0005' from sub-workflow 'CallGenome'
[2026-06-05T13:59:56.607536Z] [nf-2e26ff0a781b507d6e40a8f087be8d33-6ea65-r94v2] [603_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0011] Task initiated on local node
[2026-06-05T13:59:56.608464Z] [nf-2e26ff0a781b507d6e40a8f087be8d33-6ea65-r94v2] [603_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_011_chr12_0005] Task initiated on local node
[2026-06-05T13:59:56.638276Z] [nf-2e26ff0a781b507d6e40a8f087be8d33-6ea65-r94v2] [603_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0011' launched from sub-workflow 'CallGenome'
[2026-06-05T13:59:56.638858Z] [nf-2e26ff0a781b507d6e40a8f087be8d33-6ea65-r94v2] [603_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0003' from sub-workflow 'CallGenome'
[2026-06-05T13:59:56.642119Z] [nf-2e26ff0a781b507d6e40a8f087be8d33-6ea65-r94v2] [603_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_010_chr11_0003] Task initiated on local node
[2026-06-05T13:59:56.672085Z] [nf-2e26ff0a781b507d6e40a8f087be8d33-6ea65-r94v2] [603_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0003' launched from sub-workflow 'CallGenome'
[2026-06-05T13:59:56.672635Z] [nf-2e26ff0a781b507d6e40a8f087be8d33-6ea65-r94v2] [603_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0004' from sub-workflow 'CallGenome'
[2026-06-05T13:59:56.676408Z] [nf-2e26ff0a781b507d6e40a8f087be8d33-6ea65-r94v2] [603_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0004] Task initiated on local node
[2026-06-05T13:59:56.737504Z] [nf-2e26ff0a781b507d6e40a8f087be8d33-6ea65-r94v2] [603_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0004' launched from sub-workflow 'CallGenome'
[2026-06-05T13:59:56.738068Z] [nf-2e26ff0a781b507d6e40a8f087be8d33-6ea65-r94v2] [603_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0004' from sub-workflow 'CallGenome'
[2026-06-05T13:59:56.741336Z] [nf-2e26ff0a781b507d6e40a8f087be8d33-6ea65-r94v2] [603_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0004] Task initiated on local node
[2026-06-05T13:59:56.770269Z] [nf-2e26ff0a781b507d6e40a8f087be8d33-6ea65-r94v2] [603_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0004' launched from sub-workflow 'CallGenome'
[2026-06-05T13:59:56.770865Z] [nf-2e26ff0a781b507d6e40a8f087be8d33-6ea65-r94v2] [603_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0011' from sub-workflow 'CallGenome'
[2026-06-05T13:59:56.773737Z] [nf-2e26ff0a781b507d6e40a8f087be8d33-6ea65-r94v2] [603_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_010_chr11_0011] Task initiated on local node
[2026-06-05T13:59:56.835290Z] [nf-2e26ff0a781b507d6e40a8f087be8d33-6ea65-r94v2] [603_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0005' launched from sub-workflow 'CallGenome'
[2026-06-05T13:59:56.835380Z] [nf-2e26ff0a781b507d6e40a8f087be8d33-6ea65-r94v2] [603_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0011' launched from sub-workflow 'CallGenome'
[2026-06-05T13:59:56.835880Z] [nf-2e26ff0a781b507d6e40a8f087be8d33-6ea65-r94v2] [603_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0005' from sub-workflow 'CallGenome'
[2026-06-05T13:59:56.839204Z] [nf-2e26ff0a781b507d6e40a8f087be8d33-6ea65-r94v2] [603_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_010_chr11_0005] Task initiated on local node
[2026-06-05T13:59:56.900120Z] [nf-2e26ff0a781b507d6e40a8f087be8d33-6ea65-r94v2] [603_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0005' launched from sub-workflow 'CallGenome'
[2026-06-05T13:59:57.064622Z] [nf-2e26ff0a781b507d6e40a8f087be8d33-6ea65-r94v2] [603_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0010' launched from sub-workflow 'CallGenome'
[2026-06-05T13:59:57.065123Z] [nf-2e26ff0a781b507d6e40a8f087be8d33-6ea65-r94v2] [603_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0010' from sub-workflow 'CallGenome'
[2026-06-05T13:59:57.068570Z] [nf-2e26ff0a781b507d6e40a8f087be8d33-6ea65-r94v2] [603_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0010] Task initiated on local node
[2026-06-05T13:59:57.129588Z] [nf-2e26ff0a781b507d6e40a8f087be8d33-6ea65-r94v2] [603_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0010' launched from sub-workflow 'CallGenome'
[2026-06-05T13:59:57.161589Z] [nf-2e26ff0a781b507d6e40a8f087be8d33-6ea65-r94v2] [603_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0008' launched from sub-workflow 'CallGenome'
[2026-06-05T13:59:57.162070Z] [nf-2e26ff0a781b507d6e40a8f087be8d33-6ea65-r94v2] [603_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0008' from sub-workflow 'CallGenome'
[2026-06-05T13:59:57.165572Z] [nf-2e26ff0a781b507d6e40a8f087be8d33-6ea65-r94v2] [603_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_010_chr11_0008] Task initiated on local node
[2026-06-05T13:59:57.194378Z] [nf-2e26ff0a781b507d6e40a8f087be8d33-6ea65-r94v2] [603_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0008' launched from sub-workflow 'CallGenome'
[2026-06-05T13:59:57.809697Z] [nf-2e26ff0a781b507d6e40a8f087be8d33-6ea65-r94v2] [603_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0000' launched from sub-workflow 'CallGenome'
[2026-06-05T13:59:57.809780Z] [nf-2e26ff0a781b507d6e40a8f087be8d33-6ea65-r94v2] [603_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0002' launched from sub-workflow 'CallGenome'
[2026-06-05T13:59:57.810224Z] [nf-2e26ff0a781b507d6e40a8f087be8d33-6ea65-r94v2] [603_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0002' from sub-workflow 'CallGenome'
[2026-06-05T13:59:57.810566Z] [nf-2e26ff0a781b507d6e40a8f087be8d33-6ea65-r94v2] [603_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0000' from sub-workflow 'CallGenome'
[2026-06-05T13:59:57.813852Z] [nf-2e26ff0a781b507d6e40a8f087be8d33-6ea65-r94v2] [603_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_010_chr11_0000] Task initiated on local node
[2026-06-05T13:59:57.844030Z] [nf-2e26ff0a781b507d6e40a8f087be8d33-6ea65-r94v2] [603_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0009' launched from sub-workflow 'CallGenome'
[2026-06-05T13:59:57.844351Z] [nf-2e26ff0a781b507d6e40a8f087be8d33-6ea65-r94v2] [603_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_010_chr11_0002] Task initiated on local node
[2026-06-05T13:59:57.845176Z] [nf-2e26ff0a781b507d6e40a8f087be8d33-6ea65-r94v2] [603_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0009' from sub-workflow 'CallGenome'
[2026-06-05T13:59:57.845899Z] [nf-2e26ff0a781b507d6e40a8f087be8d33-6ea65-r94v2] [603_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0000' launched from sub-workflow 'CallGenome'
[2026-06-05T13:59:57.845999Z] [nf-2e26ff0a781b507d6e40a8f087be8d33-6ea65-r94v2] [603_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0002' launched from sub-workflow 'CallGenome'
[2026-06-05T13:59:57.847996Z] [nf-2e26ff0a781b507d6e40a8f087be8d33-6ea65-r94v2] [603_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0009] Task initiated on local node
[2026-06-05T13:59:57.879050Z] [nf-2e26ff0a781b507d6e40a8f087be8d33-6ea65-r94v2] [603_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0009' launched from sub-workflow 'CallGenome'
[2026-06-05T13:59:58.343763Z] [nf-2e26ff0a781b507d6e40a8f087be8d33-6ea65-r94v2] [603_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0005' launched from sub-workflow 'CallGenome'
[2026-06-05T13:59:58.344220Z] [nf-2e26ff0a781b507d6e40a8f087be8d33-6ea65-r94v2] [603_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0005' from sub-workflow 'CallGenome'
[2026-06-05T13:59:58.347525Z] [nf-2e26ff0a781b507d6e40a8f087be8d33-6ea65-r94v2] [603_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_011_chr12_0005] Task initiated on local node
[2026-06-05T13:59:58.408449Z] [nf-2e26ff0a781b507d6e40a8f087be8d33-6ea65-r94v2] [603_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0005' launched from sub-workflow 'CallGenome'
[2026-06-05T13:59:58.408725Z] [nf-2e26ff0a781b507d6e40a8f087be8d33-6ea65-r94v2] [603_1] [TaskManager] Completed command task: 'CallGenome+completedAllGenomeSegments' launched from sub-workflow 'CallGenome'
[2026-06-05T13:59:58.408860Z] [nf-2e26ff0a781b507d6e40a8f087be8d33-6ea65-r94v2] [603_1] [TaskManager] Launching command task: 'CallGenome+SNV_concat_vcf' from sub-workflow 'CallGenome'
[2026-06-05T13:59:58.409524Z] [nf-2e26ff0a781b507d6e40a8f087be8d33-6ea65-r94v2] [603_1] [TaskManager] Launching command task: 'CallGenome+Indel_concat_vcf' from sub-workflow 'CallGenome'
[2026-06-05T13:59:58.411614Z] [nf-2e26ff0a781b507d6e40a8f087be8d33-6ea65-r94v2] [603_1] [TaskManager] Launching command task: 'CallGenome+mergeRunStats' from sub-workflow 'CallGenome'
[2026-06-05T13:59:58.412213Z] [nf-2e26ff0a781b507d6e40a8f087be8d33-6ea65-r94v2] [603_1] [TaskRunner:CallGenome+SNV_concat_vcf] Task initiated on local node
[2026-06-05T13:59:58.415402Z] [nf-2e26ff0a781b507d6e40a8f087be8d33-6ea65-r94v2] [603_1] [TaskRunner:CallGenome+Indel_concat_vcf] Task initiated on local node
[2026-06-05T13:59:58.416438Z] [nf-2e26ff0a781b507d6e40a8f087be8d33-6ea65-r94v2] [603_1] [TaskRunner:CallGenome+mergeRunStats] Task initiated on local node
[2026-06-05T13:59:58.445630Z] [nf-2e26ff0a781b507d6e40a8f087be8d33-6ea65-r94v2] [603_1] [TaskManager] Completed command task: 'CallGenome+mergeRunStats' launched from sub-workflow 'CallGenome'
[2026-06-05T13:59:58.445698Z] [nf-2e26ff0a781b507d6e40a8f087be8d33-6ea65-r94v2] [603_1] [TaskManager] Completed command task: 'CallGenome+SNV_concat_vcf' launched from sub-workflow 'CallGenome'
[2026-06-05T13:59:58.445720Z] [nf-2e26ff0a781b507d6e40a8f087be8d33-6ea65-r94v2] [603_1] [TaskManager] Completed command task: 'CallGenome+Indel_concat_vcf' launched from sub-workflow 'CallGenome'
[2026-06-05T13:59:58.445940Z] [nf-2e26ff0a781b507d6e40a8f087be8d33-6ea65-r94v2] [603_1] [TaskManager] Launching command task: 'CallGenome+Indel_index_vcf' from sub-workflow 'CallGenome'
[2026-06-05T13:59:58.446441Z] [nf-2e26ff0a781b507d6e40a8f087be8d33-6ea65-r94v2] [603_1] [TaskManager] Launching command task: 'CallGenome+SNV_index_vcf' from sub-workflow 'CallGenome'
[2026-06-05T13:59:58.449147Z] [nf-2e26ff0a781b507d6e40a8f087be8d33-6ea65-r94v2] [603_1] [TaskRunner:CallGenome+SNV_index_vcf] Task initiated on local node
[2026-06-05T13:59:58.450260Z] [nf-2e26ff0a781b507d6e40a8f087be8d33-6ea65-r94v2] [603_1] [TaskRunner:CallGenome+Indel_index_vcf] Task initiated on local node
[2026-06-05T13:59:58.479223Z] [nf-2e26ff0a781b507d6e40a8f087be8d33-6ea65-r94v2] [603_1] [TaskManager] Completed command task: 'CallGenome+SNV_index_vcf' launched from sub-workflow 'CallGenome'
[2026-06-05T13:59:58.479276Z] [nf-2e26ff0a781b507d6e40a8f087be8d33-6ea65-r94v2] [603_1] [TaskManager] Completed command task: 'CallGenome+Indel_index_vcf' launched from sub-workflow 'CallGenome'
[2026-06-05T13:59:58.479442Z] [nf-2e26ff0a781b507d6e40a8f087be8d33-6ea65-r94v2] [603_1] [TaskManager] Launching command task: 'CallGenome+removeTmpDir' from sub-workflow 'CallGenome'
[2026-06-05T13:59:58.481950Z] [nf-2e26ff0a781b507d6e40a8f087be8d33-6ea65-r94v2] [603_1] [TaskRunner:CallGenome+removeTmpDir] Task initiated on local node
[2026-06-05T13:59:58.511463Z] [nf-2e26ff0a781b507d6e40a8f087be8d33-6ea65-r94v2] [603_1] [TaskManager] Completed command task: 'CallGenome+removeTmpDir' launched from sub-workflow 'CallGenome'
[2026-06-05T14:00:01.130600Z] [nf-2e26ff0a781b507d6e40a8f087be8d33-6ea65-r94v2] [603_1] [TaskManager] Completed sub-workflow task: 'CallGenome' launched from master workflow
[2026-06-05T14:00:09.421592Z] [nf-2e26ff0a781b507d6e40a8f087be8d33-6ea65-r94v2] [603_1] [WorkflowRunner] Strelka somatic workflow successfully completed.
[2026-06-05T14:00:09.421592Z] [nf-2e26ff0a781b507d6e40a8f087be8d33-6ea65-r94v2] [603_1] [WorkflowRunner] 
[2026-06-05T14:00:09.421592Z] [nf-2e26ff0a781b507d6e40a8f087be8d33-6ea65-r94v2] [603_1] [WorkflowRunner] 	workflow version: 2.9.10
[2026-06-05T14:00:09.421639Z] [nf-2e26ff0a781b507d6e40a8f087be8d33-6ea65-r94v2] [603_1] [WorkflowRunner] 
[2026-06-05T14:00:09.421651Z] [nf-2e26ff0a781b507d6e40a8f087be8d33-6ea65-r94v2] [603_1] [WorkflowRunner] Workflow successfully completed all tasks
[2026-06-05T14:00:09.421659Z] [nf-2e26ff0a781b507d6e40a8f087be8d33-6ea65-r94v2] [603_1] [WorkflowRunner] Elapsed time for full workflow: 18 sec