.command.err - Workdir - DAQ:CONTROL_VARIANT_CALLING:CONTROL_SOMATIC_VC:BAM_VARIANT_CALLING_SOMATIC_STRELKA:STRELKA_SOMATIC (positive_somatic_control_2;chr20_14085521-14085828.bed)

File Info

Filename: .command.err
Full Path: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/9c/894b3452accb5bcd20466bf4d03679/.command.err
Size: 87.8 KB
Task: DAQ:CONTROL_VARIANT_CALLING:CONTROL_SOMATIC_VC:BAM_VARIANT_CALLING_SOMATIC_STRELKA:STRELKA_SOMATIC (positive_somatic_control_2;chr20_14085521-14085828.bed)
Attempt
Content

[W::hts_idx_load2] The index file is older than the data file: /tmp/nxf.XXXXrXRHfG/chr20_14085521-14085828.bed.gz.tbi
[W::hts_idx_load2] The index file is older than the data file: /tmp/nxf.XXXXrXRHfG/chr20_14085521-14085828.bed.gz.tbi
[W::hts_idx_load2] The index file is older than the data file: /tmp/nxf.XXXXrXRHfG/chr20_14085521-14085828.bed.gz.tbi
[2026-06-05T13:59:50.989524Z] [nf-9c894b3452accb5bcd20466bf4d03679-960bb-pdwgn] [614_1] [WorkflowRunner] Initiating pyFlow run
[2026-06-05T13:59:50.990408Z] [nf-9c894b3452accb5bcd20466bf4d03679-960bb-pdwgn] [614_1] [WorkflowRunner] pyFlowClientWorkflowClass: StrelkaSomaticWorkflow
[2026-06-05T13:59:50.990443Z] [nf-9c894b3452accb5bcd20466bf4d03679-960bb-pdwgn] [614_1] [WorkflowRunner] pyFlowVersion: 1.1.20
[2026-06-05T13:59:50.990450Z] [nf-9c894b3452accb5bcd20466bf4d03679-960bb-pdwgn] [614_1] [WorkflowRunner] pythonVersion: 2.7.15.final.0
[2026-06-05T13:59:50.990457Z] [nf-9c894b3452accb5bcd20466bf4d03679-960bb-pdwgn] [614_1] [WorkflowRunner] WorkingDir: '/tmp/nxf.XXXXrXRHfG'
[2026-06-05T13:59:50.990462Z] [nf-9c894b3452accb5bcd20466bf4d03679-960bb-pdwgn] [614_1] [WorkflowRunner] ProcessCmdLine: '/var/tmp/strelka/runWorkflow.py -m local -j 8'
[2026-06-05T13:59:50.990470Z] [nf-9c894b3452accb5bcd20466bf4d03679-960bb-pdwgn] [614_1] [WorkflowRunner] [RunParameters] mode: local
[2026-06-05T13:59:50.990474Z] [nf-9c894b3452accb5bcd20466bf4d03679-960bb-pdwgn] [614_1] [WorkflowRunner] [RunParameters] nCores: 8
[2026-06-05T13:59:50.990478Z] [nf-9c894b3452accb5bcd20466bf4d03679-960bb-pdwgn] [614_1] [WorkflowRunner] [RunParameters] memMb: 3096076
[2026-06-05T13:59:50.990483Z] [nf-9c894b3452accb5bcd20466bf4d03679-960bb-pdwgn] [614_1] [WorkflowRunner] [RunParameters] dataDir: /var/tmp/strelka/workspace/pyflow.data
[2026-06-05T13:59:50.990487Z] [nf-9c894b3452accb5bcd20466bf4d03679-960bb-pdwgn] [614_1] [WorkflowRunner] [RunParameters] isDryRun: False
[2026-06-05T13:59:50.990491Z] [nf-9c894b3452accb5bcd20466bf4d03679-960bb-pdwgn] [614_1] [WorkflowRunner] [RunParameters] isContinue: False
[2026-06-05T13:59:50.990495Z] [nf-9c894b3452accb5bcd20466bf4d03679-960bb-pdwgn] [614_1] [WorkflowRunner] [RunParameters] isForceContinue: True
[2026-06-05T13:59:50.990499Z] [nf-9c894b3452accb5bcd20466bf4d03679-960bb-pdwgn] [614_1] [WorkflowRunner] [RunParameters] mailTo: ''
[2026-06-05T13:59:50.991175Z] [nf-9c894b3452accb5bcd20466bf4d03679-960bb-pdwgn] [614_1] [TaskRunner:masterWorkflow] Starting task specification for master workflow
[2026-06-05T13:59:50.991290Z] [nf-9c894b3452accb5bcd20466bf4d03679-960bb-pdwgn] [614_1] [StrelkaSomaticWorkflow] Initiating Strelka somatic workflow version: 2.9.10
[2026-06-05T13:59:50.997476Z] [nf-9c894b3452accb5bcd20466bf4d03679-960bb-pdwgn] [614_1] [WorkflowRunner] Adding sub-workflow task 'CallGenome' to master workflow
[2026-06-05T13:59:50.998465Z] [nf-9c894b3452accb5bcd20466bf4d03679-960bb-pdwgn] [614_1] [TaskManager] Launching sub-workflow task: 'CallGenome' from master workflow
[2026-06-05T13:59:50.998954Z] [nf-9c894b3452accb5bcd20466bf4d03679-960bb-pdwgn] [614_1] [TaskRunner:masterWorkflow] Finished task specification for master workflow
[2026-06-05T13:59:50.999289Z] [nf-9c894b3452accb5bcd20466bf4d03679-960bb-pdwgn] [614_1] [TaskRunner:CallGenome] Starting task specification for sub-workflow
[2026-06-05T13:59:50.999540Z] [nf-9c894b3452accb5bcd20466bf4d03679-960bb-pdwgn] [614_1] [WorkflowRunner] Adding command task 'CallGenome+makeTmpDir' to sub-workflow 'CallGenome'
[2026-06-05T13:59:51.000394Z] [nf-9c894b3452accb5bcd20466bf4d03679-960bb-pdwgn] [614_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_002_chr3_0000' to sub-workflow 'CallGenome'
[2026-06-05T13:59:51.000802Z] [nf-9c894b3452accb5bcd20466bf4d03679-960bb-pdwgn] [614_1] [TaskManager] Launching command task: 'CallGenome+makeTmpDir' from sub-workflow 'CallGenome'
[2026-06-05T13:59:51.001028Z] [nf-9c894b3452accb5bcd20466bf4d03679-960bb-pdwgn] [614_1] [WorkflowRunner] Adding command task 'CallGenome+fixVcfHeader_chromId_002_chr3_0000' to sub-workflow 'CallGenome'
[2026-06-05T13:59:51.001157Z] [nf-9c894b3452accb5bcd20466bf4d03679-960bb-pdwgn] [614_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_002_chr3_0000' to sub-workflow 'CallGenome'
[2026-06-05T13:59:51.001410Z] [nf-9c894b3452accb5bcd20466bf4d03679-960bb-pdwgn] [614_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_002_chr3_0001' to sub-workflow 'CallGenome'
[2026-06-05T13:59:51.001638Z] [nf-9c894b3452accb5bcd20466bf4d03679-960bb-pdwgn] [614_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_002_chr3_0001' to sub-workflow 'CallGenome'
[2026-06-05T13:59:51.001945Z] [nf-9c894b3452accb5bcd20466bf4d03679-960bb-pdwgn] [614_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_002_chr3_0002' to sub-workflow 'CallGenome'
[2026-06-05T13:59:51.002188Z] [nf-9c894b3452accb5bcd20466bf4d03679-960bb-pdwgn] [614_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_002_chr3_0002' to sub-workflow 'CallGenome'
[2026-06-05T13:59:51.004738Z] [nf-9c894b3452accb5bcd20466bf4d03679-960bb-pdwgn] [614_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_002_chr3_0003' to sub-workflow 'CallGenome'
[2026-06-05T13:59:51.004918Z] [nf-9c894b3452accb5bcd20466bf4d03679-960bb-pdwgn] [614_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_002_chr3_0003' to sub-workflow 'CallGenome'
[2026-06-05T13:59:51.005000Z] [nf-9c894b3452accb5bcd20466bf4d03679-960bb-pdwgn] [614_1] [TaskRunner:CallGenome+makeTmpDir] Task initiated on local node
[2026-06-05T13:59:51.005844Z] [nf-9c894b3452accb5bcd20466bf4d03679-960bb-pdwgn] [614_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_002_chr3_0004' to sub-workflow 'CallGenome'
[2026-06-05T13:59:51.005998Z] [nf-9c894b3452accb5bcd20466bf4d03679-960bb-pdwgn] [614_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_002_chr3_0004' to sub-workflow 'CallGenome'
[2026-06-05T13:59:51.006157Z] [nf-9c894b3452accb5bcd20466bf4d03679-960bb-pdwgn] [614_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_002_chr3_0005' to sub-workflow 'CallGenome'
[2026-06-05T13:59:51.006234Z] [nf-9c894b3452accb5bcd20466bf4d03679-960bb-pdwgn] [614_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_002_chr3_0005' to sub-workflow 'CallGenome'
[2026-06-05T13:59:51.006355Z] [nf-9c894b3452accb5bcd20466bf4d03679-960bb-pdwgn] [614_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_002_chr3_0006' to sub-workflow 'CallGenome'
[2026-06-05T13:59:51.006436Z] [nf-9c894b3452accb5bcd20466bf4d03679-960bb-pdwgn] [614_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_002_chr3_0006' to sub-workflow 'CallGenome'
[2026-06-05T13:59:51.006554Z] [nf-9c894b3452accb5bcd20466bf4d03679-960bb-pdwgn] [614_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_002_chr3_0007' to sub-workflow 'CallGenome'
[2026-06-05T13:59:51.006618Z] [nf-9c894b3452accb5bcd20466bf4d03679-960bb-pdwgn] [614_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_002_chr3_0007' to sub-workflow 'CallGenome'
[2026-06-05T13:59:51.006731Z] [nf-9c894b3452accb5bcd20466bf4d03679-960bb-pdwgn] [614_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_002_chr3_0008' to sub-workflow 'CallGenome'
[2026-06-05T13:59:51.006887Z] [nf-9c894b3452accb5bcd20466bf4d03679-960bb-pdwgn] [614_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_002_chr3_0008' to sub-workflow 'CallGenome'
[2026-06-05T13:59:51.007023Z] [nf-9c894b3452accb5bcd20466bf4d03679-960bb-pdwgn] [614_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_002_chr3_0009' to sub-workflow 'CallGenome'
[2026-06-05T13:59:51.007160Z] [nf-9c894b3452accb5bcd20466bf4d03679-960bb-pdwgn] [614_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_002_chr3_0009' to sub-workflow 'CallGenome'
[2026-06-05T13:59:51.007514Z] [nf-9c894b3452accb5bcd20466bf4d03679-960bb-pdwgn] [614_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_002_chr3_0010' to sub-workflow 'CallGenome'
[2026-06-05T13:59:51.007859Z] [nf-9c894b3452accb5bcd20466bf4d03679-960bb-pdwgn] [614_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_002_chr3_0010' to sub-workflow 'CallGenome'
[2026-06-05T13:59:51.007989Z] [nf-9c894b3452accb5bcd20466bf4d03679-960bb-pdwgn] [614_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_002_chr3_0011' to sub-workflow 'CallGenome'
[2026-06-05T13:59:51.008052Z] [nf-9c894b3452accb5bcd20466bf4d03679-960bb-pdwgn] [614_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_002_chr3_0011' to sub-workflow 'CallGenome'
[2026-06-05T13:59:51.008159Z] [nf-9c894b3452accb5bcd20466bf4d03679-960bb-pdwgn] [614_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_002_chr3_0012' to sub-workflow 'CallGenome'
[2026-06-05T13:59:51.008227Z] [nf-9c894b3452accb5bcd20466bf4d03679-960bb-pdwgn] [614_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_002_chr3_0012' to sub-workflow 'CallGenome'
[2026-06-05T13:59:51.008334Z] [nf-9c894b3452accb5bcd20466bf4d03679-960bb-pdwgn] [614_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_002_chr3_0013' to sub-workflow 'CallGenome'
[2026-06-05T13:59:51.008400Z] [nf-9c894b3452accb5bcd20466bf4d03679-960bb-pdwgn] [614_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_002_chr3_0013' to sub-workflow 'CallGenome'
[2026-06-05T13:59:51.008534Z] [nf-9c894b3452accb5bcd20466bf4d03679-960bb-pdwgn] [614_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_002_chr3_0014' to sub-workflow 'CallGenome'
[2026-06-05T13:59:51.008594Z] [nf-9c894b3452accb5bcd20466bf4d03679-960bb-pdwgn] [614_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_002_chr3_0014' to sub-workflow 'CallGenome'
[2026-06-05T13:59:51.008702Z] [nf-9c894b3452accb5bcd20466bf4d03679-960bb-pdwgn] [614_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_002_chr3_0015' to sub-workflow 'CallGenome'
[2026-06-05T13:59:51.008768Z] [nf-9c894b3452accb5bcd20466bf4d03679-960bb-pdwgn] [614_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_002_chr3_0015' to sub-workflow 'CallGenome'
[2026-06-05T13:59:51.008940Z] [nf-9c894b3452accb5bcd20466bf4d03679-960bb-pdwgn] [614_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_002_chr3_0016' to sub-workflow 'CallGenome'
[2026-06-05T13:59:51.009057Z] [nf-9c894b3452accb5bcd20466bf4d03679-960bb-pdwgn] [614_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_002_chr3_0016' to sub-workflow 'CallGenome'
[2026-06-05T13:59:51.009367Z] [nf-9c894b3452accb5bcd20466bf4d03679-960bb-pdwgn] [614_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_003_chr4_0000' to sub-workflow 'CallGenome'
[2026-06-05T13:59:51.010022Z] [nf-9c894b3452accb5bcd20466bf4d03679-960bb-pdwgn] [614_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_003_chr4_0000' to sub-workflow 'CallGenome'
[2026-06-05T13:59:51.010232Z] [nf-9c894b3452accb5bcd20466bf4d03679-960bb-pdwgn] [614_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_003_chr4_0001' to sub-workflow 'CallGenome'
[2026-06-05T13:59:51.010302Z] [nf-9c894b3452accb5bcd20466bf4d03679-960bb-pdwgn] [614_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_003_chr4_0001' to sub-workflow 'CallGenome'
[2026-06-05T13:59:51.010447Z] [nf-9c894b3452accb5bcd20466bf4d03679-960bb-pdwgn] [614_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_003_chr4_0002' to sub-workflow 'CallGenome'
[2026-06-05T13:59:51.010513Z] [nf-9c894b3452accb5bcd20466bf4d03679-960bb-pdwgn] [614_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_003_chr4_0002' to sub-workflow 'CallGenome'
[2026-06-05T13:59:51.010624Z] [nf-9c894b3452accb5bcd20466bf4d03679-960bb-pdwgn] [614_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_003_chr4_0003' to sub-workflow 'CallGenome'
[2026-06-05T13:59:51.010690Z] [nf-9c894b3452accb5bcd20466bf4d03679-960bb-pdwgn] [614_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_003_chr4_0003' to sub-workflow 'CallGenome'
[2026-06-05T13:59:51.010801Z] [nf-9c894b3452accb5bcd20466bf4d03679-960bb-pdwgn] [614_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_003_chr4_0004' to sub-workflow 'CallGenome'
[2026-06-05T13:59:51.010865Z] [nf-9c894b3452accb5bcd20466bf4d03679-960bb-pdwgn] [614_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_003_chr4_0004' to sub-workflow 'CallGenome'
[2026-06-05T13:59:51.011335Z] [nf-9c894b3452accb5bcd20466bf4d03679-960bb-pdwgn] [614_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_003_chr4_0005' to sub-workflow 'CallGenome'
[2026-06-05T13:59:51.011848Z] [nf-9c894b3452accb5bcd20466bf4d03679-960bb-pdwgn] [614_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_003_chr4_0005' to sub-workflow 'CallGenome'
[2026-06-05T13:59:51.012160Z] [nf-9c894b3452accb5bcd20466bf4d03679-960bb-pdwgn] [614_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_003_chr4_0006' to sub-workflow 'CallGenome'
[2026-06-05T13:59:51.012547Z] [nf-9c894b3452accb5bcd20466bf4d03679-960bb-pdwgn] [614_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_003_chr4_0006' to sub-workflow 'CallGenome'
[2026-06-05T13:59:51.012657Z] [nf-9c894b3452accb5bcd20466bf4d03679-960bb-pdwgn] [614_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_003_chr4_0007' to sub-workflow 'CallGenome'
[2026-06-05T13:59:51.012719Z] [nf-9c894b3452accb5bcd20466bf4d03679-960bb-pdwgn] [614_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_003_chr4_0007' to sub-workflow 'CallGenome'
[2026-06-05T13:59:51.012827Z] [nf-9c894b3452accb5bcd20466bf4d03679-960bb-pdwgn] [614_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_003_chr4_0008' to sub-workflow 'CallGenome'
[2026-06-05T13:59:51.012887Z] [nf-9c894b3452accb5bcd20466bf4d03679-960bb-pdwgn] [614_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_003_chr4_0008' to sub-workflow 'CallGenome'
[2026-06-05T13:59:51.012998Z] [nf-9c894b3452accb5bcd20466bf4d03679-960bb-pdwgn] [614_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_003_chr4_0009' to sub-workflow 'CallGenome'
[2026-06-05T13:59:51.013058Z] [nf-9c894b3452accb5bcd20466bf4d03679-960bb-pdwgn] [614_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_003_chr4_0009' to sub-workflow 'CallGenome'
[2026-06-05T13:59:51.013163Z] [nf-9c894b3452accb5bcd20466bf4d03679-960bb-pdwgn] [614_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_003_chr4_0010' to sub-workflow 'CallGenome'
[2026-06-05T13:59:51.013226Z] [nf-9c894b3452accb5bcd20466bf4d03679-960bb-pdwgn] [614_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_003_chr4_0010' to sub-workflow 'CallGenome'
[2026-06-05T13:59:51.013333Z] [nf-9c894b3452accb5bcd20466bf4d03679-960bb-pdwgn] [614_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_003_chr4_0011' to sub-workflow 'CallGenome'
[2026-06-05T13:59:51.013395Z] [nf-9c894b3452accb5bcd20466bf4d03679-960bb-pdwgn] [614_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_003_chr4_0011' to sub-workflow 'CallGenome'
[2026-06-05T13:59:51.013503Z] [nf-9c894b3452accb5bcd20466bf4d03679-960bb-pdwgn] [614_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_003_chr4_0012' to sub-workflow 'CallGenome'
[2026-06-05T13:59:51.013567Z] [nf-9c894b3452accb5bcd20466bf4d03679-960bb-pdwgn] [614_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_003_chr4_0012' to sub-workflow 'CallGenome'
[2026-06-05T13:59:51.014081Z] [nf-9c894b3452accb5bcd20466bf4d03679-960bb-pdwgn] [614_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_003_chr4_0013' to sub-workflow 'CallGenome'
[2026-06-05T13:59:51.014463Z] [nf-9c894b3452accb5bcd20466bf4d03679-960bb-pdwgn] [614_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_003_chr4_0013' to sub-workflow 'CallGenome'
[2026-06-05T13:59:51.015062Z] [nf-9c894b3452accb5bcd20466bf4d03679-960bb-pdwgn] [614_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_003_chr4_0014' to sub-workflow 'CallGenome'
[2026-06-05T13:59:51.015126Z] [nf-9c894b3452accb5bcd20466bf4d03679-960bb-pdwgn] [614_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_003_chr4_0014' to sub-workflow 'CallGenome'
[2026-06-05T13:59:51.015692Z] [nf-9c894b3452accb5bcd20466bf4d03679-960bb-pdwgn] [614_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_003_chr4_0015' to sub-workflow 'CallGenome'
[2026-06-05T13:59:51.015756Z] [nf-9c894b3452accb5bcd20466bf4d03679-960bb-pdwgn] [614_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_003_chr4_0015' to sub-workflow 'CallGenome'
[2026-06-05T13:59:51.015869Z] [nf-9c894b3452accb5bcd20466bf4d03679-960bb-pdwgn] [614_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_019_chr20_0000' to sub-workflow 'CallGenome'
[2026-06-05T13:59:51.015936Z] [nf-9c894b3452accb5bcd20466bf4d03679-960bb-pdwgn] [614_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_019_chr20_0000' to sub-workflow 'CallGenome'
[2026-06-05T13:59:51.016049Z] [nf-9c894b3452accb5bcd20466bf4d03679-960bb-pdwgn] [614_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_019_chr20_0001' to sub-workflow 'CallGenome'
[2026-06-05T13:59:51.016340Z] [nf-9c894b3452accb5bcd20466bf4d03679-960bb-pdwgn] [614_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_019_chr20_0001' to sub-workflow 'CallGenome'
[2026-06-05T13:59:51.019110Z] [nf-9c894b3452accb5bcd20466bf4d03679-960bb-pdwgn] [614_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_019_chr20_0002' to sub-workflow 'CallGenome'
[2026-06-05T13:59:51.019221Z] [nf-9c894b3452accb5bcd20466bf4d03679-960bb-pdwgn] [614_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_019_chr20_0002' to sub-workflow 'CallGenome'
[2026-06-05T13:59:51.019660Z] [nf-9c894b3452accb5bcd20466bf4d03679-960bb-pdwgn] [614_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_019_chr20_0003' to sub-workflow 'CallGenome'
[2026-06-05T13:59:51.020283Z] [nf-9c894b3452accb5bcd20466bf4d03679-960bb-pdwgn] [614_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_019_chr20_0003' to sub-workflow 'CallGenome'
[2026-06-05T13:59:51.020462Z] [nf-9c894b3452accb5bcd20466bf4d03679-960bb-pdwgn] [614_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_019_chr20_0004' to sub-workflow 'CallGenome'
[2026-06-05T13:59:51.020533Z] [nf-9c894b3452accb5bcd20466bf4d03679-960bb-pdwgn] [614_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_019_chr20_0004' to sub-workflow 'CallGenome'
[2026-06-05T13:59:51.020651Z] [nf-9c894b3452accb5bcd20466bf4d03679-960bb-pdwgn] [614_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_019_chr20_0005' to sub-workflow 'CallGenome'
[2026-06-05T13:59:51.020715Z] [nf-9c894b3452accb5bcd20466bf4d03679-960bb-pdwgn] [614_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_019_chr20_0005' to sub-workflow 'CallGenome'
[2026-06-05T13:59:51.020831Z] [nf-9c894b3452accb5bcd20466bf4d03679-960bb-pdwgn] [614_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_020_chr21_0000' to sub-workflow 'CallGenome'
[2026-06-05T13:59:51.020894Z] [nf-9c894b3452accb5bcd20466bf4d03679-960bb-pdwgn] [614_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_020_chr21_0000' to sub-workflow 'CallGenome'
[2026-06-05T13:59:51.021008Z] [nf-9c894b3452accb5bcd20466bf4d03679-960bb-pdwgn] [614_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_020_chr21_0001' to sub-workflow 'CallGenome'
[2026-06-05T13:59:51.021131Z] [nf-9c894b3452accb5bcd20466bf4d03679-960bb-pdwgn] [614_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_020_chr21_0001' to sub-workflow 'CallGenome'
[2026-06-05T13:59:51.021447Z] [nf-9c894b3452accb5bcd20466bf4d03679-960bb-pdwgn] [614_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_020_chr21_0002' to sub-workflow 'CallGenome'
[2026-06-05T13:59:51.022183Z] [nf-9c894b3452accb5bcd20466bf4d03679-960bb-pdwgn] [614_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_020_chr21_0002' to sub-workflow 'CallGenome'
[2026-06-05T13:59:51.022314Z] [nf-9c894b3452accb5bcd20466bf4d03679-960bb-pdwgn] [614_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_020_chr21_0003' to sub-workflow 'CallGenome'
[2026-06-05T13:59:51.022385Z] [nf-9c894b3452accb5bcd20466bf4d03679-960bb-pdwgn] [614_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_020_chr21_0003' to sub-workflow 'CallGenome'
[2026-06-05T13:59:51.022497Z] [nf-9c894b3452accb5bcd20466bf4d03679-960bb-pdwgn] [614_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_021_chr22_0000' to sub-workflow 'CallGenome'
[2026-06-05T13:59:51.022562Z] [nf-9c894b3452accb5bcd20466bf4d03679-960bb-pdwgn] [614_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_021_chr22_0000' to sub-workflow 'CallGenome'
[2026-06-05T13:59:51.022673Z] [nf-9c894b3452accb5bcd20466bf4d03679-960bb-pdwgn] [614_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_021_chr22_0001' to sub-workflow 'CallGenome'
[2026-06-05T13:59:51.022737Z] [nf-9c894b3452accb5bcd20466bf4d03679-960bb-pdwgn] [614_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_021_chr22_0001' to sub-workflow 'CallGenome'
[2026-06-05T13:59:51.022850Z] [nf-9c894b3452accb5bcd20466bf4d03679-960bb-pdwgn] [614_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_021_chr22_0002' to sub-workflow 'CallGenome'
[2026-06-05T13:59:51.022912Z] [nf-9c894b3452accb5bcd20466bf4d03679-960bb-pdwgn] [614_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_021_chr22_0002' to sub-workflow 'CallGenome'
[2026-06-05T13:59:51.023038Z] [nf-9c894b3452accb5bcd20466bf4d03679-960bb-pdwgn] [614_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_021_chr22_0003' to sub-workflow 'CallGenome'
[2026-06-05T13:59:51.023100Z] [nf-9c894b3452accb5bcd20466bf4d03679-960bb-pdwgn] [614_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_021_chr22_0003' to sub-workflow 'CallGenome'
[2026-06-05T13:59:51.038818Z] [nf-9c894b3452accb5bcd20466bf4d03679-960bb-pdwgn] [614_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_021_chr22_0004' to sub-workflow 'CallGenome'
[2026-06-05T13:59:51.039356Z] [nf-9c894b3452accb5bcd20466bf4d03679-960bb-pdwgn] [614_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_021_chr22_0004' to sub-workflow 'CallGenome'
[2026-06-05T13:59:51.039562Z] [nf-9c894b3452accb5bcd20466bf4d03679-960bb-pdwgn] [614_1] [TaskManager] Completed command task: 'CallGenome+makeTmpDir' launched from sub-workflow 'CallGenome'
[2026-06-05T13:59:51.039659Z] [nf-9c894b3452accb5bcd20466bf4d03679-960bb-pdwgn] [614_1] [WorkflowRunner] Adding command task 'CallGenome+completedAllGenomeSegments' to sub-workflow 'CallGenome'
[2026-06-05T13:59:51.041286Z] [nf-9c894b3452accb5bcd20466bf4d03679-960bb-pdwgn] [614_1] [WorkflowRunner] Adding command task 'CallGenome+SNV_concat_vcf' to sub-workflow 'CallGenome'
[2026-06-05T13:59:51.041463Z] [nf-9c894b3452accb5bcd20466bf4d03679-960bb-pdwgn] [614_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_002_chr3_0014' from sub-workflow 'CallGenome'
[2026-06-05T13:59:51.041992Z] [nf-9c894b3452accb5bcd20466bf4d03679-960bb-pdwgn] [614_1] [WorkflowRunner] Adding command task 'CallGenome+SNV_index_vcf' to sub-workflow 'CallGenome'
[2026-06-05T13:59:51.042254Z] [nf-9c894b3452accb5bcd20466bf4d03679-960bb-pdwgn] [614_1] [WorkflowRunner] Adding command task 'CallGenome+Indel_concat_vcf' to sub-workflow 'CallGenome'
[2026-06-05T13:59:51.042358Z] [nf-9c894b3452accb5bcd20466bf4d03679-960bb-pdwgn] [614_1] [WorkflowRunner] Adding command task 'CallGenome+Indel_index_vcf' to sub-workflow 'CallGenome'
[2026-06-05T13:59:51.042887Z] [nf-9c894b3452accb5bcd20466bf4d03679-960bb-pdwgn] [614_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_002_chr3_0000' from sub-workflow 'CallGenome'
[2026-06-05T13:59:51.043428Z] [nf-9c894b3452accb5bcd20466bf4d03679-960bb-pdwgn] [614_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0012' from sub-workflow 'CallGenome'
[2026-06-05T13:59:51.044385Z] [nf-9c894b3452accb5bcd20466bf4d03679-960bb-pdwgn] [614_1] [WorkflowRunner] Adding command task 'CallGenome+mergeRunStats' to sub-workflow 'CallGenome'
[2026-06-05T13:59:51.044837Z] [nf-9c894b3452accb5bcd20466bf4d03679-960bb-pdwgn] [614_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_002_chr3_0010' from sub-workflow 'CallGenome'
[2026-06-05T13:59:51.045666Z] [nf-9c894b3452accb5bcd20466bf4d03679-960bb-pdwgn] [614_1] [WorkflowRunner] Adding command task 'CallGenome+removeTmpDir' to sub-workflow 'CallGenome'
[2026-06-05T13:59:51.048891Z] [nf-9c894b3452accb5bcd20466bf4d03679-960bb-pdwgn] [614_1] [TaskRunner:CallGenome] Finished task specification for sub-workflow
[2026-06-05T13:59:51.049365Z] [nf-9c894b3452accb5bcd20466bf4d03679-960bb-pdwgn] [614_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_002_chr3_0000] Task initiated on local node
[2026-06-05T13:59:51.050151Z] [nf-9c894b3452accb5bcd20466bf4d03679-960bb-pdwgn] [614_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_002_chr3_0014] Task initiated on local node
[2026-06-05T13:59:51.050365Z] [nf-9c894b3452accb5bcd20466bf4d03679-960bb-pdwgn] [614_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0007' from sub-workflow 'CallGenome'
[2026-06-05T13:59:51.051613Z] [nf-9c894b3452accb5bcd20466bf4d03679-960bb-pdwgn] [614_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_019_chr20_0002' from sub-workflow 'CallGenome'
[2026-06-05T13:59:51.052969Z] [nf-9c894b3452accb5bcd20466bf4d03679-960bb-pdwgn] [614_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_002_chr3_0001' from sub-workflow 'CallGenome'
[2026-06-05T13:59:51.054110Z] [nf-9c894b3452accb5bcd20466bf4d03679-960bb-pdwgn] [614_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0003' from sub-workflow 'CallGenome'
[2026-06-05T13:59:51.056815Z] [nf-9c894b3452accb5bcd20466bf4d03679-960bb-pdwgn] [614_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_003_chr4_0007] Task initiated on local node
[2026-06-05T13:59:51.061864Z] [nf-9c894b3452accb5bcd20466bf4d03679-960bb-pdwgn] [614_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_002_chr3_0010] Task initiated on local node
[2026-06-05T13:59:51.065883Z] [nf-9c894b3452accb5bcd20466bf4d03679-960bb-pdwgn] [614_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_003_chr4_0012] Task initiated on local node
[2026-06-05T13:59:51.069713Z] [nf-9c894b3452accb5bcd20466bf4d03679-960bb-pdwgn] [614_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_019_chr20_0002] Task initiated on local node
[2026-06-05T13:59:51.076373Z] [nf-9c894b3452accb5bcd20466bf4d03679-960bb-pdwgn] [614_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_002_chr3_0001] Task initiated on local node
[2026-06-05T13:59:51.077090Z] [nf-9c894b3452accb5bcd20466bf4d03679-960bb-pdwgn] [614_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_003_chr4_0003] Task initiated on local node
[2026-06-05T13:59:51.188435Z] [nf-9c894b3452accb5bcd20466bf4d03679-960bb-pdwgn] [614_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0007' launched from sub-workflow 'CallGenome'
[2026-06-05T13:59:51.188551Z] [nf-9c894b3452accb5bcd20466bf4d03679-960bb-pdwgn] [614_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0012' launched from sub-workflow 'CallGenome'
[2026-06-05T13:59:51.188588Z] [nf-9c894b3452accb5bcd20466bf4d03679-960bb-pdwgn] [614_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0003' launched from sub-workflow 'CallGenome'
[2026-06-05T13:59:51.189642Z] [nf-9c894b3452accb5bcd20466bf4d03679-960bb-pdwgn] [614_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_019_chr20_0001' from sub-workflow 'CallGenome'
[2026-06-05T13:59:51.190488Z] [nf-9c894b3452accb5bcd20466bf4d03679-960bb-pdwgn] [614_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0001' from sub-workflow 'CallGenome'
[2026-06-05T13:59:51.190817Z] [nf-9c894b3452accb5bcd20466bf4d03679-960bb-pdwgn] [614_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_002_chr3_0004' from sub-workflow 'CallGenome'
[2026-06-05T13:59:51.199429Z] [nf-9c894b3452accb5bcd20466bf4d03679-960bb-pdwgn] [614_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_002_chr3_0004] Task initiated on local node
[2026-06-05T13:59:51.200133Z] [nf-9c894b3452accb5bcd20466bf4d03679-960bb-pdwgn] [614_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_003_chr4_0001] Task initiated on local node
[2026-06-05T13:59:51.201169Z] [nf-9c894b3452accb5bcd20466bf4d03679-960bb-pdwgn] [614_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_019_chr20_0001] Task initiated on local node
[2026-06-05T13:59:52.009768Z] [nf-9c894b3452accb5bcd20466bf4d03679-960bb-pdwgn] [614_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_019_chr20_0002' launched from sub-workflow 'CallGenome'
[2026-06-05T13:59:52.010991Z] [nf-9c894b3452accb5bcd20466bf4d03679-960bb-pdwgn] [614_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0006' from sub-workflow 'CallGenome'
[2026-06-05T13:59:52.015863Z] [nf-9c894b3452accb5bcd20466bf4d03679-960bb-pdwgn] [614_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_003_chr4_0006] Task initiated on local node
[2026-06-05T13:59:52.126920Z] [nf-9c894b3452accb5bcd20466bf4d03679-960bb-pdwgn] [614_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0006' launched from sub-workflow 'CallGenome'
[2026-06-05T13:59:52.128113Z] [nf-9c894b3452accb5bcd20466bf4d03679-960bb-pdwgn] [614_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_019_chr20_0000' from sub-workflow 'CallGenome'
[2026-06-05T13:59:52.132620Z] [nf-9c894b3452accb5bcd20466bf4d03679-960bb-pdwgn] [614_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_019_chr20_0000] Task initiated on local node
[2026-06-05T13:59:52.193140Z] [nf-9c894b3452accb5bcd20466bf4d03679-960bb-pdwgn] [614_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0001' launched from sub-workflow 'CallGenome'
[2026-06-05T13:59:52.194348Z] [nf-9c894b3452accb5bcd20466bf4d03679-960bb-pdwgn] [614_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_002_chr3_0011' from sub-workflow 'CallGenome'
[2026-06-05T13:59:52.197093Z] [nf-9c894b3452accb5bcd20466bf4d03679-960bb-pdwgn] [614_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_019_chr20_0000' launched from sub-workflow 'CallGenome'
[2026-06-05T13:59:52.197974Z] [nf-9c894b3452accb5bcd20466bf4d03679-960bb-pdwgn] [614_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_002_chr3_0011] Task initiated on local node
[2026-06-05T13:59:52.198293Z] [nf-9c894b3452accb5bcd20466bf4d03679-960bb-pdwgn] [614_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0005' from sub-workflow 'CallGenome'
[2026-06-05T13:59:52.201328Z] [nf-9c894b3452accb5bcd20466bf4d03679-960bb-pdwgn] [614_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_003_chr4_0005] Task initiated on local node
[2026-06-05T13:59:52.313214Z] [nf-9c894b3452accb5bcd20466bf4d03679-960bb-pdwgn] [614_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0005' launched from sub-workflow 'CallGenome'
[2026-06-05T13:59:52.314294Z] [nf-9c894b3452accb5bcd20466bf4d03679-960bb-pdwgn] [614_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0005' from sub-workflow 'CallGenome'
[2026-06-05T13:59:52.317642Z] [nf-9c894b3452accb5bcd20466bf4d03679-960bb-pdwgn] [614_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_003_chr4_0005] Task initiated on local node
[2026-06-05T13:59:52.379027Z] [nf-9c894b3452accb5bcd20466bf4d03679-960bb-pdwgn] [614_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_002_chr3_0014' launched from sub-workflow 'CallGenome'
[2026-06-05T13:59:52.379149Z] [nf-9c894b3452accb5bcd20466bf4d03679-960bb-pdwgn] [614_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0005' launched from sub-workflow 'CallGenome'
[2026-06-05T13:59:52.380243Z] [nf-9c894b3452accb5bcd20466bf4d03679-960bb-pdwgn] [614_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0006' from sub-workflow 'CallGenome'
[2026-06-05T13:59:52.380968Z] [nf-9c894b3452accb5bcd20466bf4d03679-960bb-pdwgn] [614_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_021_chr22_0003' from sub-workflow 'CallGenome'
[2026-06-05T13:59:52.385968Z] [nf-9c894b3452accb5bcd20466bf4d03679-960bb-pdwgn] [614_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_003_chr4_0006] Task initiated on local node
[2026-06-05T13:59:52.386911Z] [nf-9c894b3452accb5bcd20466bf4d03679-960bb-pdwgn] [614_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_021_chr22_0003] Task initiated on local node
[2026-06-05T13:59:52.448348Z] [nf-9c894b3452accb5bcd20466bf4d03679-960bb-pdwgn] [614_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0006' launched from sub-workflow 'CallGenome'
[2026-06-05T13:59:52.449400Z] [nf-9c894b3452accb5bcd20466bf4d03679-960bb-pdwgn] [614_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_019_chr20_0000' from sub-workflow 'CallGenome'
[2026-06-05T13:59:52.453271Z] [nf-9c894b3452accb5bcd20466bf4d03679-960bb-pdwgn] [614_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_019_chr20_0000] Task initiated on local node
[2026-06-05T13:59:52.514312Z] [nf-9c894b3452accb5bcd20466bf4d03679-960bb-pdwgn] [614_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_019_chr20_0000' launched from sub-workflow 'CallGenome'
[2026-06-05T13:59:52.515451Z] [nf-9c894b3452accb5bcd20466bf4d03679-960bb-pdwgn] [614_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0004' from sub-workflow 'CallGenome'
[2026-06-05T13:59:52.519778Z] [nf-9c894b3452accb5bcd20466bf4d03679-960bb-pdwgn] [614_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_003_chr4_0004] Task initiated on local node
[2026-06-05T13:59:52.630580Z] [nf-9c894b3452accb5bcd20466bf4d03679-960bb-pdwgn] [614_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_019_chr20_0001' launched from sub-workflow 'CallGenome'
[2026-06-05T13:59:52.630701Z] [nf-9c894b3452accb5bcd20466bf4d03679-960bb-pdwgn] [614_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0004' launched from sub-workflow 'CallGenome'
[2026-06-05T13:59:52.631822Z] [nf-9c894b3452accb5bcd20466bf4d03679-960bb-pdwgn] [614_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_021_chr22_0004' from sub-workflow 'CallGenome'
[2026-06-05T13:59:52.632861Z] [nf-9c894b3452accb5bcd20466bf4d03679-960bb-pdwgn] [614_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_002_chr3_0006' from sub-workflow 'CallGenome'
[2026-06-05T13:59:52.637725Z] [nf-9c894b3452accb5bcd20466bf4d03679-960bb-pdwgn] [614_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_021_chr22_0004] Task initiated on local node
[2026-06-05T13:59:52.638991Z] [nf-9c894b3452accb5bcd20466bf4d03679-960bb-pdwgn] [614_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_002_chr3_0006] Task initiated on local node
[2026-06-05T13:59:52.701273Z] [nf-9c894b3452accb5bcd20466bf4d03679-960bb-pdwgn] [614_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_002_chr3_0000' launched from sub-workflow 'CallGenome'
[2026-06-05T13:59:52.702470Z] [nf-9c894b3452accb5bcd20466bf4d03679-960bb-pdwgn] [614_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_002_chr3_0016' from sub-workflow 'CallGenome'
[2026-06-05T13:59:52.706451Z] [nf-9c894b3452accb5bcd20466bf4d03679-960bb-pdwgn] [614_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_002_chr3_0016] Task initiated on local node
[2026-06-05T13:59:53.018403Z] [nf-9c894b3452accb5bcd20466bf4d03679-960bb-pdwgn] [614_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_002_chr3_0001' launched from sub-workflow 'CallGenome'
[2026-06-05T13:59:53.019585Z] [nf-9c894b3452accb5bcd20466bf4d03679-960bb-pdwgn] [614_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0009' from sub-workflow 'CallGenome'
[2026-06-05T13:59:53.023756Z] [nf-9c894b3452accb5bcd20466bf4d03679-960bb-pdwgn] [614_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_003_chr4_0009] Task initiated on local node
[2026-06-05T13:59:53.134972Z] [nf-9c894b3452accb5bcd20466bf4d03679-960bb-pdwgn] [614_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0009' launched from sub-workflow 'CallGenome'
[2026-06-05T13:59:53.136111Z] [nf-9c894b3452accb5bcd20466bf4d03679-960bb-pdwgn] [614_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0013' from sub-workflow 'CallGenome'
[2026-06-05T13:59:53.139696Z] [nf-9c894b3452accb5bcd20466bf4d03679-960bb-pdwgn] [614_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_003_chr4_0013] Task initiated on local node
[2026-06-05T13:59:53.250978Z] [nf-9c894b3452accb5bcd20466bf4d03679-960bb-pdwgn] [614_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0013' launched from sub-workflow 'CallGenome'
[2026-06-05T13:59:53.252208Z] [nf-9c894b3452accb5bcd20466bf4d03679-960bb-pdwgn] [614_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0014' from sub-workflow 'CallGenome'
[2026-06-05T13:59:53.255968Z] [nf-9c894b3452accb5bcd20466bf4d03679-960bb-pdwgn] [614_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_003_chr4_0014] Task initiated on local node
[2026-06-05T13:59:53.367299Z] [nf-9c894b3452accb5bcd20466bf4d03679-960bb-pdwgn] [614_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0014' launched from sub-workflow 'CallGenome'
[2026-06-05T13:59:53.368436Z] [nf-9c894b3452accb5bcd20466bf4d03679-960bb-pdwgn] [614_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_019_chr20_0005' from sub-workflow 'CallGenome'
[2026-06-05T13:59:53.372556Z] [nf-9c894b3452accb5bcd20466bf4d03679-960bb-pdwgn] [614_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_019_chr20_0005] Task initiated on local node
[2026-06-05T13:59:53.734786Z] [nf-9c894b3452accb5bcd20466bf4d03679-960bb-pdwgn] [614_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_002_chr3_0006' launched from sub-workflow 'CallGenome'
[2026-06-05T13:59:53.735906Z] [nf-9c894b3452accb5bcd20466bf4d03679-960bb-pdwgn] [614_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_002_chr3_0007' from sub-workflow 'CallGenome'
[2026-06-05T13:59:53.739692Z] [nf-9c894b3452accb5bcd20466bf4d03679-960bb-pdwgn] [614_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_002_chr3_0007] Task initiated on local node
[2026-06-05T13:59:54.102077Z] [nf-9c894b3452accb5bcd20466bf4d03679-960bb-pdwgn] [614_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_002_chr3_0010' launched from sub-workflow 'CallGenome'
[2026-06-05T13:59:54.103168Z] [nf-9c894b3452accb5bcd20466bf4d03679-960bb-pdwgn] [614_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0009' from sub-workflow 'CallGenome'
[2026-06-05T13:59:54.106823Z] [nf-9c894b3452accb5bcd20466bf4d03679-960bb-pdwgn] [614_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_003_chr4_0009] Task initiated on local node
[2026-06-05T13:59:54.167865Z] [nf-9c894b3452accb5bcd20466bf4d03679-960bb-pdwgn] [614_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_002_chr3_0007' launched from sub-workflow 'CallGenome'
[2026-06-05T13:59:54.167981Z] [nf-9c894b3452accb5bcd20466bf4d03679-960bb-pdwgn] [614_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0009' launched from sub-workflow 'CallGenome'
[2026-06-05T13:59:54.168995Z] [nf-9c894b3452accb5bcd20466bf4d03679-960bb-pdwgn] [614_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_002_chr3_0007' from sub-workflow 'CallGenome'
[2026-06-05T13:59:54.169624Z] [nf-9c894b3452accb5bcd20466bf4d03679-960bb-pdwgn] [614_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0007' from sub-workflow 'CallGenome'
[2026-06-05T13:59:54.173838Z] [nf-9c894b3452accb5bcd20466bf4d03679-960bb-pdwgn] [614_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_002_chr3_0007] Task initiated on local node
[2026-06-05T13:59:54.174744Z] [nf-9c894b3452accb5bcd20466bf4d03679-960bb-pdwgn] [614_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_003_chr4_0007] Task initiated on local node
[2026-06-05T13:59:54.237714Z] [nf-9c894b3452accb5bcd20466bf4d03679-960bb-pdwgn] [614_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0007' launched from sub-workflow 'CallGenome'
[2026-06-05T13:59:54.237802Z] [nf-9c894b3452accb5bcd20466bf4d03679-960bb-pdwgn] [614_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_002_chr3_0007' launched from sub-workflow 'CallGenome'
[2026-06-05T13:59:54.238764Z] [nf-9c894b3452accb5bcd20466bf4d03679-960bb-pdwgn] [614_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_019_chr20_0001' from sub-workflow 'CallGenome'
[2026-06-05T13:59:54.239567Z] [nf-9c894b3452accb5bcd20466bf4d03679-960bb-pdwgn] [614_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0003' from sub-workflow 'CallGenome'
[2026-06-05T13:59:54.242983Z] [nf-9c894b3452accb5bcd20466bf4d03679-960bb-pdwgn] [614_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_003_chr4_0003] Task initiated on local node
[2026-06-05T13:59:54.288808Z] [nf-9c894b3452accb5bcd20466bf4d03679-960bb-pdwgn] [614_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_019_chr20_0001] Task initiated on local node
[2026-06-05T13:59:54.306239Z] [nf-9c894b3452accb5bcd20466bf4d03679-960bb-pdwgn] [614_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_019_chr20_0001' launched from sub-workflow 'CallGenome'
[2026-06-05T13:59:54.306324Z] [nf-9c894b3452accb5bcd20466bf4d03679-960bb-pdwgn] [614_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0003' launched from sub-workflow 'CallGenome'
[2026-06-05T13:59:54.307283Z] [nf-9c894b3452accb5bcd20466bf4d03679-960bb-pdwgn] [614_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_002_chr3_0014' from sub-workflow 'CallGenome'
[2026-06-05T13:59:54.307999Z] [nf-9c894b3452accb5bcd20466bf4d03679-960bb-pdwgn] [614_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_019_chr20_0002' from sub-workflow 'CallGenome'
[2026-06-05T13:59:54.312153Z] [nf-9c894b3452accb5bcd20466bf4d03679-960bb-pdwgn] [614_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_002_chr3_0014] Task initiated on local node
[2026-06-05T13:59:54.313946Z] [nf-9c894b3452accb5bcd20466bf4d03679-960bb-pdwgn] [614_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_019_chr20_0002] Task initiated on local node
[2026-06-05T13:59:54.375321Z] [nf-9c894b3452accb5bcd20466bf4d03679-960bb-pdwgn] [614_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_002_chr3_0014' launched from sub-workflow 'CallGenome'
[2026-06-05T13:59:54.375433Z] [nf-9c894b3452accb5bcd20466bf4d03679-960bb-pdwgn] [614_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_019_chr20_0002' launched from sub-workflow 'CallGenome'
[2026-06-05T13:59:54.376411Z] [nf-9c894b3452accb5bcd20466bf4d03679-960bb-pdwgn] [614_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_002_chr3_0008' from sub-workflow 'CallGenome'
[2026-06-05T13:59:54.377477Z] [nf-9c894b3452accb5bcd20466bf4d03679-960bb-pdwgn] [614_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0012' from sub-workflow 'CallGenome'
[2026-06-05T13:59:54.381449Z] [nf-9c894b3452accb5bcd20466bf4d03679-960bb-pdwgn] [614_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_002_chr3_0008] Task initiated on local node
[2026-06-05T13:59:54.382704Z] [nf-9c894b3452accb5bcd20466bf4d03679-960bb-pdwgn] [614_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_003_chr4_0012] Task initiated on local node
[2026-06-05T13:59:54.444486Z] [nf-9c894b3452accb5bcd20466bf4d03679-960bb-pdwgn] [614_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0012' launched from sub-workflow 'CallGenome'
[2026-06-05T13:59:54.445478Z] [nf-9c894b3452accb5bcd20466bf4d03679-960bb-pdwgn] [614_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_002_chr3_0010' from sub-workflow 'CallGenome'
[2026-06-05T13:59:54.449355Z] [nf-9c894b3452accb5bcd20466bf4d03679-960bb-pdwgn] [614_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_002_chr3_0010] Task initiated on local node
[2026-06-05T13:59:54.510322Z] [nf-9c894b3452accb5bcd20466bf4d03679-960bb-pdwgn] [614_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_002_chr3_0010' launched from sub-workflow 'CallGenome'
[2026-06-05T13:59:54.511457Z] [nf-9c894b3452accb5bcd20466bf4d03679-960bb-pdwgn] [614_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_002_chr3_0003' from sub-workflow 'CallGenome'
[2026-06-05T13:59:54.515594Z] [nf-9c894b3452accb5bcd20466bf4d03679-960bb-pdwgn] [614_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_002_chr3_0003] Task initiated on local node
[2026-06-05T13:59:54.676689Z] [nf-9c894b3452accb5bcd20466bf4d03679-960bb-pdwgn] [614_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_002_chr3_0011' launched from sub-workflow 'CallGenome'
[2026-06-05T13:59:54.677725Z] [nf-9c894b3452accb5bcd20466bf4d03679-960bb-pdwgn] [614_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_021_chr22_0000' from sub-workflow 'CallGenome'
[2026-06-05T13:59:54.681697Z] [nf-9c894b3452accb5bcd20466bf4d03679-960bb-pdwgn] [614_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_021_chr22_0000] Task initiated on local node
[2026-06-05T13:59:54.710579Z] [nf-9c894b3452accb5bcd20466bf4d03679-960bb-pdwgn] [614_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_002_chr3_0004' launched from sub-workflow 'CallGenome'
[2026-06-05T13:59:54.711603Z] [nf-9c894b3452accb5bcd20466bf4d03679-960bb-pdwgn] [614_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_002_chr3_0004' from sub-workflow 'CallGenome'
[2026-06-05T13:59:54.715181Z] [nf-9c894b3452accb5bcd20466bf4d03679-960bb-pdwgn] [614_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_002_chr3_0004] Task initiated on local node
[2026-06-05T13:59:54.744241Z] [nf-9c894b3452accb5bcd20466bf4d03679-960bb-pdwgn] [614_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_021_chr22_0000' launched from sub-workflow 'CallGenome'
[2026-06-05T13:59:54.745227Z] [nf-9c894b3452accb5bcd20466bf4d03679-960bb-pdwgn] [614_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0004' from sub-workflow 'CallGenome'
[2026-06-05T13:59:54.748723Z] [nf-9c894b3452accb5bcd20466bf4d03679-960bb-pdwgn] [614_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_003_chr4_0004] Task initiated on local node
[2026-06-05T13:59:54.749405Z] [nf-9c894b3452accb5bcd20466bf4d03679-960bb-pdwgn] [614_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_002_chr3_0004' launched from sub-workflow 'CallGenome'
[2026-06-05T13:59:54.750295Z] [nf-9c894b3452accb5bcd20466bf4d03679-960bb-pdwgn] [614_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_002_chr3_0001' from sub-workflow 'CallGenome'
[2026-06-05T13:59:54.753793Z] [nf-9c894b3452accb5bcd20466bf4d03679-960bb-pdwgn] [614_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_002_chr3_0001] Task initiated on local node
[2026-06-05T13:59:54.782928Z] [nf-9c894b3452accb5bcd20466bf4d03679-960bb-pdwgn] [614_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0004' launched from sub-workflow 'CallGenome'
[2026-06-05T13:59:54.783886Z] [nf-9c894b3452accb5bcd20466bf4d03679-960bb-pdwgn] [614_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_002_chr3_0013' from sub-workflow 'CallGenome'
[2026-06-05T13:59:54.787767Z] [nf-9c894b3452accb5bcd20466bf4d03679-960bb-pdwgn] [614_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_002_chr3_0013] Task initiated on local node
[2026-06-05T13:59:54.792282Z] [nf-9c894b3452accb5bcd20466bf4d03679-960bb-pdwgn] [614_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_002_chr3_0001' launched from sub-workflow 'CallGenome'
[2026-06-05T13:59:54.793096Z] [nf-9c894b3452accb5bcd20466bf4d03679-960bb-pdwgn] [614_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0011' from sub-workflow 'CallGenome'
[2026-06-05T13:59:54.796300Z] [nf-9c894b3452accb5bcd20466bf4d03679-960bb-pdwgn] [614_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_003_chr4_0011] Task initiated on local node
[2026-06-05T13:59:54.825172Z] [nf-9c894b3452accb5bcd20466bf4d03679-960bb-pdwgn] [614_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_021_chr22_0003' launched from sub-workflow 'CallGenome'
[2026-06-05T13:59:54.826142Z] [nf-9c894b3452accb5bcd20466bf4d03679-960bb-pdwgn] [614_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_002_chr3_0011' from sub-workflow 'CallGenome'
[2026-06-05T13:59:54.829834Z] [nf-9c894b3452accb5bcd20466bf4d03679-960bb-pdwgn] [614_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_002_chr3_0011] Task initiated on local node
[2026-06-05T13:59:54.858889Z] [nf-9c894b3452accb5bcd20466bf4d03679-960bb-pdwgn] [614_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0011' launched from sub-workflow 'CallGenome'
[2026-06-05T13:59:54.859798Z] [nf-9c894b3452accb5bcd20466bf4d03679-960bb-pdwgn] [614_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_002_chr3_0002' from sub-workflow 'CallGenome'
[2026-06-05T13:59:54.863884Z] [nf-9c894b3452accb5bcd20466bf4d03679-960bb-pdwgn] [614_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_002_chr3_0002] Task initiated on local node
[2026-06-05T13:59:54.868324Z] [nf-9c894b3452accb5bcd20466bf4d03679-960bb-pdwgn] [614_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_002_chr3_0011' launched from sub-workflow 'CallGenome'
[2026-06-05T13:59:54.869111Z] [nf-9c894b3452accb5bcd20466bf4d03679-960bb-pdwgn] [614_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_002_chr3_0005' from sub-workflow 'CallGenome'
[2026-06-05T13:59:54.872990Z] [nf-9c894b3452accb5bcd20466bf4d03679-960bb-pdwgn] [614_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_002_chr3_0005] Task initiated on local node
[2026-06-05T13:59:54.885676Z] [nf-9c894b3452accb5bcd20466bf4d03679-960bb-pdwgn] [614_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_002_chr3_0016' launched from sub-workflow 'CallGenome'
[2026-06-05T13:59:54.886600Z] [nf-9c894b3452accb5bcd20466bf4d03679-960bb-pdwgn] [614_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_021_chr22_0003' from sub-workflow 'CallGenome'
[2026-06-05T13:59:54.889920Z] [nf-9c894b3452accb5bcd20466bf4d03679-960bb-pdwgn] [614_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_021_chr22_0003] Task initiated on local node
[2026-06-05T13:59:54.951063Z] [nf-9c894b3452accb5bcd20466bf4d03679-960bb-pdwgn] [614_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_021_chr22_0003' launched from sub-workflow 'CallGenome'
[2026-06-05T13:59:54.951959Z] [nf-9c894b3452accb5bcd20466bf4d03679-960bb-pdwgn] [614_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_002_chr3_0006' from sub-workflow 'CallGenome'
[2026-06-05T13:59:54.955822Z] [nf-9c894b3452accb5bcd20466bf4d03679-960bb-pdwgn] [614_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_002_chr3_0006] Task initiated on local node
[2026-06-05T13:59:54.984480Z] [nf-9c894b3452accb5bcd20466bf4d03679-960bb-pdwgn] [614_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_021_chr22_0004' launched from sub-workflow 'CallGenome'
[2026-06-05T13:59:54.985390Z] [nf-9c894b3452accb5bcd20466bf4d03679-960bb-pdwgn] [614_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0001' from sub-workflow 'CallGenome'
[2026-06-05T13:59:54.989879Z] [nf-9c894b3452accb5bcd20466bf4d03679-960bb-pdwgn] [614_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_003_chr4_0001] Task initiated on local node
[2026-06-05T13:59:55.001375Z] [nf-9c894b3452accb5bcd20466bf4d03679-960bb-pdwgn] [614_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_002_chr3_0006' launched from sub-workflow 'CallGenome'
[2026-06-05T13:59:55.002209Z] [nf-9c894b3452accb5bcd20466bf4d03679-960bb-pdwgn] [614_1] [TaskManager] Launching command task: 'CallGenome+fixVcfHeader_chromId_002_chr3_0000' from sub-workflow 'CallGenome'
[2026-06-05T13:59:55.005644Z] [nf-9c894b3452accb5bcd20466bf4d03679-960bb-pdwgn] [614_1] [TaskRunner:CallGenome+fixVcfHeader_chromId_002_chr3_0000] Task initiated on local node
[2026-06-05T13:59:55.035962Z] [nf-9c894b3452accb5bcd20466bf4d03679-960bb-pdwgn] [614_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_019_chr20_0005' launched from sub-workflow 'CallGenome'
[2026-06-05T13:59:55.036065Z] [nf-9c894b3452accb5bcd20466bf4d03679-960bb-pdwgn] [614_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0001' launched from sub-workflow 'CallGenome'
[2026-06-05T13:59:55.036886Z] [nf-9c894b3452accb5bcd20466bf4d03679-960bb-pdwgn] [614_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_019_chr20_0005' from sub-workflow 'CallGenome'
[2026-06-05T13:59:55.037616Z] [nf-9c894b3452accb5bcd20466bf4d03679-960bb-pdwgn] [614_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_002_chr3_0016' from sub-workflow 'CallGenome'
[2026-06-05T13:59:55.041500Z] [nf-9c894b3452accb5bcd20466bf4d03679-960bb-pdwgn] [614_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_019_chr20_0005] Task initiated on local node
[2026-06-05T13:59:55.043463Z] [nf-9c894b3452accb5bcd20466bf4d03679-960bb-pdwgn] [614_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_002_chr3_0016] Task initiated on local node
[2026-06-05T13:59:55.070866Z] [nf-9c894b3452accb5bcd20466bf4d03679-960bb-pdwgn] [614_1] [TaskManager] Completed command task: 'CallGenome+fixVcfHeader_chromId_002_chr3_0000' launched from sub-workflow 'CallGenome'
[2026-06-05T13:59:55.071816Z] [nf-9c894b3452accb5bcd20466bf4d03679-960bb-pdwgn] [614_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_021_chr22_0001' from sub-workflow 'CallGenome'
[2026-06-05T13:59:55.075679Z] [nf-9c894b3452accb5bcd20466bf4d03679-960bb-pdwgn] [614_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_021_chr22_0001] Task initiated on local node
[2026-06-05T13:59:55.076354Z] [nf-9c894b3452accb5bcd20466bf4d03679-960bb-pdwgn] [614_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_019_chr20_0005' launched from sub-workflow 'CallGenome'
[2026-06-05T13:59:55.077536Z] [nf-9c894b3452accb5bcd20466bf4d03679-960bb-pdwgn] [614_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0014' from sub-workflow 'CallGenome'
[2026-06-05T13:59:55.078249Z] [nf-9c894b3452accb5bcd20466bf4d03679-960bb-pdwgn] [614_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_002_chr3_0016' launched from sub-workflow 'CallGenome'
[2026-06-05T13:59:55.080964Z] [nf-9c894b3452accb5bcd20466bf4d03679-960bb-pdwgn] [614_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_020_chr21_0003' from sub-workflow 'CallGenome'
[2026-06-05T13:59:55.081635Z] [nf-9c894b3452accb5bcd20466bf4d03679-960bb-pdwgn] [614_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_003_chr4_0014] Task initiated on local node
[2026-06-05T13:59:55.085013Z] [nf-9c894b3452accb5bcd20466bf4d03679-960bb-pdwgn] [614_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_020_chr21_0003] Task initiated on local node
[2026-06-05T13:59:55.146341Z] [nf-9c894b3452accb5bcd20466bf4d03679-960bb-pdwgn] [614_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0014' launched from sub-workflow 'CallGenome'
[2026-06-05T13:59:55.147257Z] [nf-9c894b3452accb5bcd20466bf4d03679-960bb-pdwgn] [614_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_021_chr22_0002' from sub-workflow 'CallGenome'
[2026-06-05T13:59:55.150967Z] [nf-9c894b3452accb5bcd20466bf4d03679-960bb-pdwgn] [614_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_021_chr22_0002] Task initiated on local node
[2026-06-05T13:59:55.763888Z] [nf-9c894b3452accb5bcd20466bf4d03679-960bb-pdwgn] [614_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_002_chr3_0008' launched from sub-workflow 'CallGenome'
[2026-06-05T13:59:55.764801Z] [nf-9c894b3452accb5bcd20466bf4d03679-960bb-pdwgn] [614_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_002_chr3_0012' from sub-workflow 'CallGenome'
[2026-06-05T13:59:55.769121Z] [nf-9c894b3452accb5bcd20466bf4d03679-960bb-pdwgn] [614_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_002_chr3_0012] Task initiated on local node
[2026-06-05T13:59:55.930289Z] [nf-9c894b3452accb5bcd20466bf4d03679-960bb-pdwgn] [614_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_021_chr22_0001' launched from sub-workflow 'CallGenome'
[2026-06-05T13:59:55.931231Z] [nf-9c894b3452accb5bcd20466bf4d03679-960bb-pdwgn] [614_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_021_chr22_0001' from sub-workflow 'CallGenome'
[2026-06-05T13:59:55.934968Z] [nf-9c894b3452accb5bcd20466bf4d03679-960bb-pdwgn] [614_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_021_chr22_0001] Task initiated on local node
[2026-06-05T13:59:55.995776Z] [nf-9c894b3452accb5bcd20466bf4d03679-960bb-pdwgn] [614_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_021_chr22_0001' launched from sub-workflow 'CallGenome'
[2026-06-05T13:59:55.996616Z] [nf-9c894b3452accb5bcd20466bf4d03679-960bb-pdwgn] [614_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_002_chr3_0000' from sub-workflow 'CallGenome'
[2026-06-05T13:59:56.000606Z] [nf-9c894b3452accb5bcd20466bf4d03679-960bb-pdwgn] [614_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_002_chr3_0000] Task initiated on local node
[2026-06-05T13:59:56.061473Z] [nf-9c894b3452accb5bcd20466bf4d03679-960bb-pdwgn] [614_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_002_chr3_0013' launched from sub-workflow 'CallGenome'
[2026-06-05T13:59:56.061600Z] [nf-9c894b3452accb5bcd20466bf4d03679-960bb-pdwgn] [614_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_002_chr3_0000' launched from sub-workflow 'CallGenome'
[2026-06-05T13:59:56.062390Z] [nf-9c894b3452accb5bcd20466bf4d03679-960bb-pdwgn] [614_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0011' from sub-workflow 'CallGenome'
[2026-06-05T13:59:56.063174Z] [nf-9c894b3452accb5bcd20466bf4d03679-960bb-pdwgn] [614_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0013' from sub-workflow 'CallGenome'
[2026-06-05T13:59:56.066574Z] [nf-9c894b3452accb5bcd20466bf4d03679-960bb-pdwgn] [614_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_003_chr4_0011] Task initiated on local node
[2026-06-05T13:59:56.068273Z] [nf-9c894b3452accb5bcd20466bf4d03679-960bb-pdwgn] [614_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_003_chr4_0013] Task initiated on local node
[2026-06-05T13:59:56.127851Z] [nf-9c894b3452accb5bcd20466bf4d03679-960bb-pdwgn] [614_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0011' launched from sub-workflow 'CallGenome'
[2026-06-05T13:59:56.127969Z] [nf-9c894b3452accb5bcd20466bf4d03679-960bb-pdwgn] [614_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0013' launched from sub-workflow 'CallGenome'
[2026-06-05T13:59:56.128752Z] [nf-9c894b3452accb5bcd20466bf4d03679-960bb-pdwgn] [614_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_021_chr22_0004' from sub-workflow 'CallGenome'
[2026-06-05T13:59:56.129601Z] [nf-9c894b3452accb5bcd20466bf4d03679-960bb-pdwgn] [614_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0010' from sub-workflow 'CallGenome'
[2026-06-05T13:59:56.133894Z] [nf-9c894b3452accb5bcd20466bf4d03679-960bb-pdwgn] [614_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_021_chr22_0004] Task initiated on local node
[2026-06-05T13:59:56.135278Z] [nf-9c894b3452accb5bcd20466bf4d03679-960bb-pdwgn] [614_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_003_chr4_0010] Task initiated on local node
[2026-06-05T13:59:56.196347Z] [nf-9c894b3452accb5bcd20466bf4d03679-960bb-pdwgn] [614_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0010' launched from sub-workflow 'CallGenome'
[2026-06-05T13:59:56.196427Z] [nf-9c894b3452accb5bcd20466bf4d03679-960bb-pdwgn] [614_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_021_chr22_0004' launched from sub-workflow 'CallGenome'
[2026-06-05T13:59:56.197162Z] [nf-9c894b3452accb5bcd20466bf4d03679-960bb-pdwgn] [614_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_019_chr20_0004' from sub-workflow 'CallGenome'
[2026-06-05T13:59:56.197844Z] [nf-9c894b3452accb5bcd20466bf4d03679-960bb-pdwgn] [614_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_002_chr3_0015' from sub-workflow 'CallGenome'
[2026-06-05T13:59:56.202798Z] [nf-9c894b3452accb5bcd20466bf4d03679-960bb-pdwgn] [614_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_019_chr20_0004] Task initiated on local node
[2026-06-05T13:59:56.203687Z] [nf-9c894b3452accb5bcd20466bf4d03679-960bb-pdwgn] [614_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_002_chr3_0015] Task initiated on local node
[2026-06-05T13:59:56.414472Z] [nf-9c894b3452accb5bcd20466bf4d03679-960bb-pdwgn] [614_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_002_chr3_0005' launched from sub-workflow 'CallGenome'
[2026-06-05T13:59:56.415399Z] [nf-9c894b3452accb5bcd20466bf4d03679-960bb-pdwgn] [614_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0010' from sub-workflow 'CallGenome'
[2026-06-05T13:59:56.419138Z] [nf-9c894b3452accb5bcd20466bf4d03679-960bb-pdwgn] [614_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_003_chr4_0010] Task initiated on local node
[2026-06-05T13:59:56.431973Z] [nf-9c894b3452accb5bcd20466bf4d03679-960bb-pdwgn] [614_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_002_chr3_0002' launched from sub-workflow 'CallGenome'
[2026-06-05T13:59:56.432779Z] [nf-9c894b3452accb5bcd20466bf4d03679-960bb-pdwgn] [614_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_020_chr21_0000' from sub-workflow 'CallGenome'
[2026-06-05T13:59:56.436424Z] [nf-9c894b3452accb5bcd20466bf4d03679-960bb-pdwgn] [614_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_020_chr21_0000] Task initiated on local node
[2026-06-05T13:59:56.465403Z] [nf-9c894b3452accb5bcd20466bf4d03679-960bb-pdwgn] [614_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0010' launched from sub-workflow 'CallGenome'
[2026-06-05T13:59:56.466268Z] [nf-9c894b3452accb5bcd20466bf4d03679-960bb-pdwgn] [614_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_002_chr3_0002' from sub-workflow 'CallGenome'
[2026-06-05T13:59:56.469783Z] [nf-9c894b3452accb5bcd20466bf4d03679-960bb-pdwgn] [614_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_002_chr3_0002] Task initiated on local node
[2026-06-05T13:59:56.531361Z] [nf-9c894b3452accb5bcd20466bf4d03679-960bb-pdwgn] [614_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_002_chr3_0002' launched from sub-workflow 'CallGenome'
[2026-06-05T13:59:56.532156Z] [nf-9c894b3452accb5bcd20466bf4d03679-960bb-pdwgn] [614_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_002_chr3_0005' from sub-workflow 'CallGenome'
[2026-06-05T13:59:56.535633Z] [nf-9c894b3452accb5bcd20466bf4d03679-960bb-pdwgn] [614_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_002_chr3_0005] Task initiated on local node
[2026-06-05T13:59:56.597196Z] [nf-9c894b3452accb5bcd20466bf4d03679-960bb-pdwgn] [614_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_002_chr3_0005' launched from sub-workflow 'CallGenome'
[2026-06-05T13:59:56.598108Z] [nf-9c894b3452accb5bcd20466bf4d03679-960bb-pdwgn] [614_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_020_chr21_0001' from sub-workflow 'CallGenome'
[2026-06-05T13:59:56.601389Z] [nf-9c894b3452accb5bcd20466bf4d03679-960bb-pdwgn] [614_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_020_chr21_0001] Task initiated on local node
[2026-06-05T13:59:57.013817Z] [nf-9c894b3452accb5bcd20466bf4d03679-960bb-pdwgn] [614_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_020_chr21_0000' launched from sub-workflow 'CallGenome'
[2026-06-05T13:59:57.014505Z] [nf-9c894b3452accb5bcd20466bf4d03679-960bb-pdwgn] [614_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_020_chr21_0000' from sub-workflow 'CallGenome'
[2026-06-05T13:59:57.018057Z] [nf-9c894b3452accb5bcd20466bf4d03679-960bb-pdwgn] [614_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_020_chr21_0000] Task initiated on local node
[2026-06-05T13:59:57.079331Z] [nf-9c894b3452accb5bcd20466bf4d03679-960bb-pdwgn] [614_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_020_chr21_0000' launched from sub-workflow 'CallGenome'
[2026-06-05T13:59:57.080168Z] [nf-9c894b3452accb5bcd20466bf4d03679-960bb-pdwgn] [614_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0008' from sub-workflow 'CallGenome'
[2026-06-05T13:59:57.084004Z] [nf-9c894b3452accb5bcd20466bf4d03679-960bb-pdwgn] [614_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_003_chr4_0008] Task initiated on local node
[2026-06-05T13:59:57.144892Z] [nf-9c894b3452accb5bcd20466bf4d03679-960bb-pdwgn] [614_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0008' launched from sub-workflow 'CallGenome'
[2026-06-05T13:59:57.145671Z] [nf-9c894b3452accb5bcd20466bf4d03679-960bb-pdwgn] [614_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0008' from sub-workflow 'CallGenome'
[2026-06-05T13:59:57.149118Z] [nf-9c894b3452accb5bcd20466bf4d03679-960bb-pdwgn] [614_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_003_chr4_0008] Task initiated on local node
[2026-06-05T13:59:57.210389Z] [nf-9c894b3452accb5bcd20466bf4d03679-960bb-pdwgn] [614_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_002_chr3_0012' launched from sub-workflow 'CallGenome'
[2026-06-05T13:59:57.210490Z] [nf-9c894b3452accb5bcd20466bf4d03679-960bb-pdwgn] [614_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0008' launched from sub-workflow 'CallGenome'
[2026-06-05T13:59:57.211245Z] [nf-9c894b3452accb5bcd20466bf4d03679-960bb-pdwgn] [614_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_002_chr3_0012' from sub-workflow 'CallGenome'
[2026-06-05T13:59:57.212027Z] [nf-9c894b3452accb5bcd20466bf4d03679-960bb-pdwgn] [614_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_002_chr3_0009' from sub-workflow 'CallGenome'
[2026-06-05T13:59:57.215732Z] [nf-9c894b3452accb5bcd20466bf4d03679-960bb-pdwgn] [614_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_002_chr3_0012] Task initiated on local node
[2026-06-05T13:59:57.217030Z] [nf-9c894b3452accb5bcd20466bf4d03679-960bb-pdwgn] [614_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_002_chr3_0009] Task initiated on local node
[2026-06-05T13:59:57.277199Z] [nf-9c894b3452accb5bcd20466bf4d03679-960bb-pdwgn] [614_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_002_chr3_0012' launched from sub-workflow 'CallGenome'
[2026-06-05T13:59:57.277912Z] [nf-9c894b3452accb5bcd20466bf4d03679-960bb-pdwgn] [614_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_021_chr22_0000' from sub-workflow 'CallGenome'
[2026-06-05T13:59:57.281341Z] [nf-9c894b3452accb5bcd20466bf4d03679-960bb-pdwgn] [614_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_021_chr22_0000] Task initiated on local node
[2026-06-05T13:59:57.342397Z] [nf-9c894b3452accb5bcd20466bf4d03679-960bb-pdwgn] [614_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_021_chr22_0000' launched from sub-workflow 'CallGenome'
[2026-06-05T13:59:57.343121Z] [nf-9c894b3452accb5bcd20466bf4d03679-960bb-pdwgn] [614_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0015' from sub-workflow 'CallGenome'
[2026-06-05T13:59:57.346690Z] [nf-9c894b3452accb5bcd20466bf4d03679-960bb-pdwgn] [614_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_003_chr4_0015] Task initiated on local node
[2026-06-05T13:59:57.407791Z] [nf-9c894b3452accb5bcd20466bf4d03679-960bb-pdwgn] [614_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0015' launched from sub-workflow 'CallGenome'
[2026-06-05T13:59:57.408569Z] [nf-9c894b3452accb5bcd20466bf4d03679-960bb-pdwgn] [614_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0015' from sub-workflow 'CallGenome'
[2026-06-05T13:59:57.412284Z] [nf-9c894b3452accb5bcd20466bf4d03679-960bb-pdwgn] [614_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_003_chr4_0015] Task initiated on local node
[2026-06-05T13:59:57.473457Z] [nf-9c894b3452accb5bcd20466bf4d03679-960bb-pdwgn] [614_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0015' launched from sub-workflow 'CallGenome'
[2026-06-05T13:59:57.474242Z] [nf-9c894b3452accb5bcd20466bf4d03679-960bb-pdwgn] [614_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_019_chr20_0003' from sub-workflow 'CallGenome'
[2026-06-05T13:59:57.477797Z] [nf-9c894b3452accb5bcd20466bf4d03679-960bb-pdwgn] [614_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_019_chr20_0003] Task initiated on local node
[2026-06-05T13:59:57.539169Z] [nf-9c894b3452accb5bcd20466bf4d03679-960bb-pdwgn] [614_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_002_chr3_0003' launched from sub-workflow 'CallGenome'
[2026-06-05T13:59:57.539931Z] [nf-9c894b3452accb5bcd20466bf4d03679-960bb-pdwgn] [614_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_002_chr3_0008' from sub-workflow 'CallGenome'
[2026-06-05T13:59:57.543503Z] [nf-9c894b3452accb5bcd20466bf4d03679-960bb-pdwgn] [614_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_002_chr3_0008] Task initiated on local node
[2026-06-05T13:59:57.572543Z] [nf-9c894b3452accb5bcd20466bf4d03679-960bb-pdwgn] [614_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_021_chr22_0002' launched from sub-workflow 'CallGenome'
[2026-06-05T13:59:57.573210Z] [nf-9c894b3452accb5bcd20466bf4d03679-960bb-pdwgn] [614_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_021_chr22_0002' from sub-workflow 'CallGenome'
[2026-06-05T13:59:57.575659Z] [nf-9c894b3452accb5bcd20466bf4d03679-960bb-pdwgn] [614_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_002_chr3_0008' launched from sub-workflow 'CallGenome'
[2026-06-05T13:59:57.576436Z] [nf-9c894b3452accb5bcd20466bf4d03679-960bb-pdwgn] [614_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_002_chr3_0013' from sub-workflow 'CallGenome'
[2026-06-05T13:59:57.577223Z] [nf-9c894b3452accb5bcd20466bf4d03679-960bb-pdwgn] [614_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_021_chr22_0002] Task initiated on local node
[2026-06-05T13:59:57.579636Z] [nf-9c894b3452accb5bcd20466bf4d03679-960bb-pdwgn] [614_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_002_chr3_0013] Task initiated on local node
[2026-06-05T13:59:57.610804Z] [nf-9c894b3452accb5bcd20466bf4d03679-960bb-pdwgn] [614_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_021_chr22_0002' launched from sub-workflow 'CallGenome'
[2026-06-05T13:59:57.611524Z] [nf-9c894b3452accb5bcd20466bf4d03679-960bb-pdwgn] [614_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_020_chr21_0002' from sub-workflow 'CallGenome'
[2026-06-05T13:59:57.612257Z] [nf-9c894b3452accb5bcd20466bf4d03679-960bb-pdwgn] [614_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_002_chr3_0013' launched from sub-workflow 'CallGenome'
[2026-06-05T13:59:57.612992Z] [nf-9c894b3452accb5bcd20466bf4d03679-960bb-pdwgn] [614_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0000' from sub-workflow 'CallGenome'
[2026-06-05T13:59:57.616120Z] [nf-9c894b3452accb5bcd20466bf4d03679-960bb-pdwgn] [614_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_020_chr21_0002] Task initiated on local node
[2026-06-05T13:59:57.617490Z] [nf-9c894b3452accb5bcd20466bf4d03679-960bb-pdwgn] [614_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_003_chr4_0000] Task initiated on local node
[2026-06-05T13:59:57.645116Z] [nf-9c894b3452accb5bcd20466bf4d03679-960bb-pdwgn] [614_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_020_chr21_0001' launched from sub-workflow 'CallGenome'
[2026-06-05T13:59:57.645752Z] [nf-9c894b3452accb5bcd20466bf4d03679-960bb-pdwgn] [614_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_020_chr21_0001' from sub-workflow 'CallGenome'
[2026-06-05T13:59:57.648681Z] [nf-9c894b3452accb5bcd20466bf4d03679-960bb-pdwgn] [614_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_020_chr21_0001] Task initiated on local node
[2026-06-05T13:59:57.710118Z] [nf-9c894b3452accb5bcd20466bf4d03679-960bb-pdwgn] [614_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_020_chr21_0001' launched from sub-workflow 'CallGenome'
[2026-06-05T13:59:57.710765Z] [nf-9c894b3452accb5bcd20466bf4d03679-960bb-pdwgn] [614_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0002' from sub-workflow 'CallGenome'
[2026-06-05T13:59:57.714151Z] [nf-9c894b3452accb5bcd20466bf4d03679-960bb-pdwgn] [614_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_003_chr4_0002] Task initiated on local node
[2026-06-05T13:59:57.775526Z] [nf-9c894b3452accb5bcd20466bf4d03679-960bb-pdwgn] [614_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0002' launched from sub-workflow 'CallGenome'
[2026-06-05T13:59:57.776160Z] [nf-9c894b3452accb5bcd20466bf4d03679-960bb-pdwgn] [614_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0002' from sub-workflow 'CallGenome'
[2026-06-05T13:59:57.779453Z] [nf-9c894b3452accb5bcd20466bf4d03679-960bb-pdwgn] [614_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_003_chr4_0002] Task initiated on local node
[2026-06-05T13:59:57.840773Z] [nf-9c894b3452accb5bcd20466bf4d03679-960bb-pdwgn] [614_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0002' launched from sub-workflow 'CallGenome'
[2026-06-05T13:59:57.841456Z] [nf-9c894b3452accb5bcd20466bf4d03679-960bb-pdwgn] [614_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_002_chr3_0003' from sub-workflow 'CallGenome'
[2026-06-05T13:59:57.844335Z] [nf-9c894b3452accb5bcd20466bf4d03679-960bb-pdwgn] [614_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_002_chr3_0003] Task initiated on local node
[2026-06-05T13:59:57.873902Z] [nf-9c894b3452accb5bcd20466bf4d03679-960bb-pdwgn] [614_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_002_chr3_0015' launched from sub-workflow 'CallGenome'
[2026-06-05T13:59:57.874811Z] [nf-9c894b3452accb5bcd20466bf4d03679-960bb-pdwgn] [614_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_002_chr3_0015' from sub-workflow 'CallGenome'
[2026-06-05T13:59:57.875492Z] [nf-9c894b3452accb5bcd20466bf4d03679-960bb-pdwgn] [614_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_002_chr3_0003' launched from sub-workflow 'CallGenome'
[2026-06-05T13:59:57.878420Z] [nf-9c894b3452accb5bcd20466bf4d03679-960bb-pdwgn] [614_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_002_chr3_0015] Task initiated on local node
[2026-06-05T13:59:57.909018Z] [nf-9c894b3452accb5bcd20466bf4d03679-960bb-pdwgn] [614_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_002_chr3_0015' launched from sub-workflow 'CallGenome'
[2026-06-05T13:59:58.123464Z] [nf-9c894b3452accb5bcd20466bf4d03679-960bb-pdwgn] [614_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_019_chr20_0004' launched from sub-workflow 'CallGenome'
[2026-06-05T13:59:58.124043Z] [nf-9c894b3452accb5bcd20466bf4d03679-960bb-pdwgn] [614_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_019_chr20_0004' from sub-workflow 'CallGenome'
[2026-06-05T13:59:58.127216Z] [nf-9c894b3452accb5bcd20466bf4d03679-960bb-pdwgn] [614_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_019_chr20_0004] Task initiated on local node
[2026-06-05T13:59:58.188339Z] [nf-9c894b3452accb5bcd20466bf4d03679-960bb-pdwgn] [614_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_019_chr20_0004' launched from sub-workflow 'CallGenome'
[2026-06-05T13:59:58.402864Z] [nf-9c894b3452accb5bcd20466bf4d03679-960bb-pdwgn] [614_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_002_chr3_0009' launched from sub-workflow 'CallGenome'
[2026-06-05T13:59:58.403387Z] [nf-9c894b3452accb5bcd20466bf4d03679-960bb-pdwgn] [614_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_002_chr3_0009' from sub-workflow 'CallGenome'
[2026-06-05T13:59:58.406678Z] [nf-9c894b3452accb5bcd20466bf4d03679-960bb-pdwgn] [614_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_002_chr3_0009] Task initiated on local node
[2026-06-05T13:59:58.467720Z] [nf-9c894b3452accb5bcd20466bf4d03679-960bb-pdwgn] [614_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_002_chr3_0009' launched from sub-workflow 'CallGenome'
[2026-06-05T13:59:59.333429Z] [nf-9c894b3452accb5bcd20466bf4d03679-960bb-pdwgn] [614_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0000' launched from sub-workflow 'CallGenome'
[2026-06-05T13:59:59.333966Z] [nf-9c894b3452accb5bcd20466bf4d03679-960bb-pdwgn] [614_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0000' from sub-workflow 'CallGenome'
[2026-06-05T13:59:59.337134Z] [nf-9c894b3452accb5bcd20466bf4d03679-960bb-pdwgn] [614_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_003_chr4_0000] Task initiated on local node
[2026-06-05T13:59:59.365985Z] [nf-9c894b3452accb5bcd20466bf4d03679-960bb-pdwgn] [614_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0000' launched from sub-workflow 'CallGenome'
[2026-06-05T13:59:59.530338Z] [nf-9c894b3452accb5bcd20466bf4d03679-960bb-pdwgn] [614_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_019_chr20_0003' launched from sub-workflow 'CallGenome'
[2026-06-05T13:59:59.530789Z] [nf-9c894b3452accb5bcd20466bf4d03679-960bb-pdwgn] [614_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_019_chr20_0003' from sub-workflow 'CallGenome'
[2026-06-05T13:59:59.533364Z] [nf-9c894b3452accb5bcd20466bf4d03679-960bb-pdwgn] [614_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_019_chr20_0003] Task initiated on local node
[2026-06-05T13:59:59.594821Z] [nf-9c894b3452accb5bcd20466bf4d03679-960bb-pdwgn] [614_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_019_chr20_0003' launched from sub-workflow 'CallGenome'
[2026-06-05T14:00:01.662979Z] [nf-9c894b3452accb5bcd20466bf4d03679-960bb-pdwgn] [614_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_020_chr21_0002' launched from sub-workflow 'CallGenome'
[2026-06-05T14:00:01.663500Z] [nf-9c894b3452accb5bcd20466bf4d03679-960bb-pdwgn] [614_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_020_chr21_0002' from sub-workflow 'CallGenome'
[2026-06-05T14:00:01.665849Z] [nf-9c894b3452accb5bcd20466bf4d03679-960bb-pdwgn] [614_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_020_chr21_0002] Task initiated on local node
[2026-06-05T14:00:01.727740Z] [nf-9c894b3452accb5bcd20466bf4d03679-960bb-pdwgn] [614_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_020_chr21_0002' launched from sub-workflow 'CallGenome'
[2026-06-05T14:00:04.798569Z] [nf-9c894b3452accb5bcd20466bf4d03679-960bb-pdwgn] [614_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_020_chr21_0003' launched from sub-workflow 'CallGenome'
[2026-06-05T14:00:04.799110Z] [nf-9c894b3452accb5bcd20466bf4d03679-960bb-pdwgn] [614_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_020_chr21_0003' from sub-workflow 'CallGenome'
[2026-06-05T14:00:04.801907Z] [nf-9c894b3452accb5bcd20466bf4d03679-960bb-pdwgn] [614_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_020_chr21_0003] Task initiated on local node
[2026-06-05T14:00:04.863371Z] [nf-9c894b3452accb5bcd20466bf4d03679-960bb-pdwgn] [614_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_020_chr21_0003' launched from sub-workflow 'CallGenome'
[2026-06-05T14:00:04.863648Z] [nf-9c894b3452accb5bcd20466bf4d03679-960bb-pdwgn] [614_1] [TaskManager] Completed command task: 'CallGenome+completedAllGenomeSegments' launched from sub-workflow 'CallGenome'
[2026-06-05T14:00:04.863767Z] [nf-9c894b3452accb5bcd20466bf4d03679-960bb-pdwgn] [614_1] [TaskManager] Launching command task: 'CallGenome+mergeRunStats' from sub-workflow 'CallGenome'
[2026-06-05T14:00:04.864314Z] [nf-9c894b3452accb5bcd20466bf4d03679-960bb-pdwgn] [614_1] [TaskManager] Launching command task: 'CallGenome+SNV_concat_vcf' from sub-workflow 'CallGenome'
[2026-06-05T14:00:04.866496Z] [nf-9c894b3452accb5bcd20466bf4d03679-960bb-pdwgn] [614_1] [TaskManager] Launching command task: 'CallGenome+Indel_concat_vcf' from sub-workflow 'CallGenome'
[2026-06-05T14:00:04.866721Z] [nf-9c894b3452accb5bcd20466bf4d03679-960bb-pdwgn] [614_1] [TaskRunner:CallGenome+mergeRunStats] Task initiated on local node
[2026-06-05T14:00:04.869905Z] [nf-9c894b3452accb5bcd20466bf4d03679-960bb-pdwgn] [614_1] [TaskRunner:CallGenome+SNV_concat_vcf] Task initiated on local node
[2026-06-05T14:00:04.870867Z] [nf-9c894b3452accb5bcd20466bf4d03679-960bb-pdwgn] [614_1] [TaskRunner:CallGenome+Indel_concat_vcf] Task initiated on local node
[2026-06-05T14:00:04.898799Z] [nf-9c894b3452accb5bcd20466bf4d03679-960bb-pdwgn] [614_1] [TaskManager] Completed command task: 'CallGenome+Indel_concat_vcf' launched from sub-workflow 'CallGenome'
[2026-06-05T14:00:04.898865Z] [nf-9c894b3452accb5bcd20466bf4d03679-960bb-pdwgn] [614_1] [TaskManager] Completed command task: 'CallGenome+mergeRunStats' launched from sub-workflow 'CallGenome'
[2026-06-05T14:00:04.898886Z] [nf-9c894b3452accb5bcd20466bf4d03679-960bb-pdwgn] [614_1] [TaskManager] Completed command task: 'CallGenome+SNV_concat_vcf' launched from sub-workflow 'CallGenome'
[2026-06-05T14:00:04.899070Z] [nf-9c894b3452accb5bcd20466bf4d03679-960bb-pdwgn] [614_1] [TaskManager] Launching command task: 'CallGenome+SNV_index_vcf' from sub-workflow 'CallGenome'
[2026-06-05T14:00:04.900607Z] [nf-9c894b3452accb5bcd20466bf4d03679-960bb-pdwgn] [614_1] [TaskManager] Launching command task: 'CallGenome+Indel_index_vcf' from sub-workflow 'CallGenome'
[2026-06-05T14:00:04.901320Z] [nf-9c894b3452accb5bcd20466bf4d03679-960bb-pdwgn] [614_1] [TaskRunner:CallGenome+SNV_index_vcf] Task initiated on local node
[2026-06-05T14:00:04.903500Z] [nf-9c894b3452accb5bcd20466bf4d03679-960bb-pdwgn] [614_1] [TaskRunner:CallGenome+Indel_index_vcf] Task initiated on local node
[2026-06-05T14:00:04.932947Z] [nf-9c894b3452accb5bcd20466bf4d03679-960bb-pdwgn] [614_1] [TaskManager] Completed command task: 'CallGenome+SNV_index_vcf' launched from sub-workflow 'CallGenome'
[2026-06-05T14:00:04.933008Z] [nf-9c894b3452accb5bcd20466bf4d03679-960bb-pdwgn] [614_1] [TaskManager] Completed command task: 'CallGenome+Indel_index_vcf' launched from sub-workflow 'CallGenome'
[2026-06-05T14:00:04.933177Z] [nf-9c894b3452accb5bcd20466bf4d03679-960bb-pdwgn] [614_1] [TaskManager] Launching command task: 'CallGenome+removeTmpDir' from sub-workflow 'CallGenome'
[2026-06-05T14:00:04.935672Z] [nf-9c894b3452accb5bcd20466bf4d03679-960bb-pdwgn] [614_1] [TaskRunner:CallGenome+removeTmpDir] Task initiated on local node
[2026-06-05T14:00:04.965132Z] [nf-9c894b3452accb5bcd20466bf4d03679-960bb-pdwgn] [614_1] [TaskManager] Completed command task: 'CallGenome+removeTmpDir' launched from sub-workflow 'CallGenome'
[2026-06-05T14:00:09.965607Z] [nf-9c894b3452accb5bcd20466bf4d03679-960bb-pdwgn] [614_1] [TaskManager] Completed sub-workflow task: 'CallGenome' launched from master workflow
[2026-06-05T14:00:24.109995Z] [nf-9c894b3452accb5bcd20466bf4d03679-960bb-pdwgn] [614_1] [WorkflowRunner] Strelka somatic workflow successfully completed.
[2026-06-05T14:00:24.109995Z] [nf-9c894b3452accb5bcd20466bf4d03679-960bb-pdwgn] [614_1] [WorkflowRunner] 
[2026-06-05T14:00:24.109995Z] [nf-9c894b3452accb5bcd20466bf4d03679-960bb-pdwgn] [614_1] [WorkflowRunner] 	workflow version: 2.9.10
[2026-06-05T14:00:24.110073Z] [nf-9c894b3452accb5bcd20466bf4d03679-960bb-pdwgn] [614_1] [WorkflowRunner] 
[2026-06-05T14:00:24.110084Z] [nf-9c894b3452accb5bcd20466bf4d03679-960bb-pdwgn] [614_1] [WorkflowRunner] Workflow successfully completed all tasks
[2026-06-05T14:00:24.110092Z] [nf-9c894b3452accb5bcd20466bf4d03679-960bb-pdwgn] [614_1] [WorkflowRunner] Elapsed time for full workflow: 33 sec