File Info

Filename
.command.err
Full Path
s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/93/c3b5700b26584d347e24a2ba34eb47/.command.err
Size
62.0 KB
Task
DAQ:CONTROL_VARIANT_CALLING:CONTROL_SOMATIC_VC:BAM_VARIANT_CALLING_SOMATIC_STRELKA:STRELKA_SOMATIC (negative_somatic_control_1;chr19_15162349-15162662.bed)
Attempt

Content

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[W::hts_idx_load2] The index file is older than the data file: /tmp/nxf.XXXXxESwqD/chr19_15162349-15162662.bed.gz.tbi
[W::hts_idx_load2] The index file is older than the data file: /tmp/nxf.XXXXxESwqD/chr19_15162349-15162662.bed.gz.tbi
[W::hts_idx_load2] The index file is older than the data file: /tmp/nxf.XXXXxESwqD/chr19_15162349-15162662.bed.gz.tbi
[2026-06-05T14:00:03.794480Z] [nf-93c3b5700b26584d347e24a2ba34eb47-3e4df-pvz9j] [613_1] [WorkflowRunner] Initiating pyFlow run
[2026-06-05T14:00:03.795327Z] [nf-93c3b5700b26584d347e24a2ba34eb47-3e4df-pvz9j] [613_1] [WorkflowRunner] pyFlowClientWorkflowClass: StrelkaSomaticWorkflow
[2026-06-05T14:00:03.795338Z] [nf-93c3b5700b26584d347e24a2ba34eb47-3e4df-pvz9j] [613_1] [WorkflowRunner] pyFlowVersion: 1.1.20
[2026-06-05T14:00:03.795343Z] [nf-93c3b5700b26584d347e24a2ba34eb47-3e4df-pvz9j] [613_1] [WorkflowRunner] pythonVersion: 2.7.15.final.0
[2026-06-05T14:00:03.795348Z] [nf-93c3b5700b26584d347e24a2ba34eb47-3e4df-pvz9j] [613_1] [WorkflowRunner] WorkingDir: '/tmp/nxf.XXXXxESwqD'
[2026-06-05T14:00:03.795353Z] [nf-93c3b5700b26584d347e24a2ba34eb47-3e4df-pvz9j] [613_1] [WorkflowRunner] ProcessCmdLine: '/var/tmp/strelka/runWorkflow.py -m local -j 8'
[2026-06-05T14:00:03.795360Z] [nf-93c3b5700b26584d347e24a2ba34eb47-3e4df-pvz9j] [613_1] [WorkflowRunner] [RunParameters] mode: local
[2026-06-05T14:00:03.795364Z] [nf-93c3b5700b26584d347e24a2ba34eb47-3e4df-pvz9j] [613_1] [WorkflowRunner] [RunParameters] nCores: 8
[2026-06-05T14:00:03.795368Z] [nf-93c3b5700b26584d347e24a2ba34eb47-3e4df-pvz9j] [613_1] [WorkflowRunner] [RunParameters] memMb: 3047507
[2026-06-05T14:00:03.795372Z] [nf-93c3b5700b26584d347e24a2ba34eb47-3e4df-pvz9j] [613_1] [WorkflowRunner] [RunParameters] dataDir: /var/tmp/strelka/workspace/pyflow.data
[2026-06-05T14:00:03.795376Z] [nf-93c3b5700b26584d347e24a2ba34eb47-3e4df-pvz9j] [613_1] [WorkflowRunner] [RunParameters] isDryRun: False
[2026-06-05T14:00:03.795380Z] [nf-93c3b5700b26584d347e24a2ba34eb47-3e4df-pvz9j] [613_1] [WorkflowRunner] [RunParameters] isContinue: False
[2026-06-05T14:00:03.795385Z] [nf-93c3b5700b26584d347e24a2ba34eb47-3e4df-pvz9j] [613_1] [WorkflowRunner] [RunParameters] isForceContinue: True
[2026-06-05T14:00:03.795390Z] [nf-93c3b5700b26584d347e24a2ba34eb47-3e4df-pvz9j] [613_1] [WorkflowRunner] [RunParameters] mailTo: ''
[2026-06-05T14:00:03.796318Z] [nf-93c3b5700b26584d347e24a2ba34eb47-3e4df-pvz9j] [613_1] [TaskRunner:masterWorkflow] Starting task specification for master workflow
[2026-06-05T14:00:03.796488Z] [nf-93c3b5700b26584d347e24a2ba34eb47-3e4df-pvz9j] [613_1] [StrelkaSomaticWorkflow] Initiating Strelka somatic workflow version: 2.9.10
[2026-06-05T14:00:03.802772Z] [nf-93c3b5700b26584d347e24a2ba34eb47-3e4df-pvz9j] [613_1] [WorkflowRunner] Adding sub-workflow task 'CallGenome' to master workflow
[2026-06-05T14:00:03.803666Z] [nf-93c3b5700b26584d347e24a2ba34eb47-3e4df-pvz9j] [613_1] [TaskManager] Launching sub-workflow task: 'CallGenome' from master workflow
[2026-06-05T14:00:03.803908Z] [nf-93c3b5700b26584d347e24a2ba34eb47-3e4df-pvz9j] [613_1] [TaskRunner:masterWorkflow] Finished task specification for master workflow
[2026-06-05T14:00:03.804157Z] [nf-93c3b5700b26584d347e24a2ba34eb47-3e4df-pvz9j] [613_1] [TaskRunner:CallGenome] Starting task specification for sub-workflow
[2026-06-05T14:00:03.804406Z] [nf-93c3b5700b26584d347e24a2ba34eb47-3e4df-pvz9j] [613_1] [WorkflowRunner] Adding command task 'CallGenome+makeTmpDir' to sub-workflow 'CallGenome'
[2026-06-05T14:00:03.804756Z] [nf-93c3b5700b26584d347e24a2ba34eb47-3e4df-pvz9j] [613_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0000' to sub-workflow 'CallGenome'
[2026-06-05T14:00:03.804849Z] [nf-93c3b5700b26584d347e24a2ba34eb47-3e4df-pvz9j] [613_1] [WorkflowRunner] Adding command task 'CallGenome+fixVcfHeader_chromId_001_chr2_0000' to sub-workflow 'CallGenome'
[2026-06-05T14:00:03.804922Z] [nf-93c3b5700b26584d347e24a2ba34eb47-3e4df-pvz9j] [613_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0000' to sub-workflow 'CallGenome'
[2026-06-05T14:00:03.805046Z] [nf-93c3b5700b26584d347e24a2ba34eb47-3e4df-pvz9j] [613_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0001' to sub-workflow 'CallGenome'
[2026-06-05T14:00:03.805116Z] [nf-93c3b5700b26584d347e24a2ba34eb47-3e4df-pvz9j] [613_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0001' to sub-workflow 'CallGenome'
[2026-06-05T14:00:03.805236Z] [nf-93c3b5700b26584d347e24a2ba34eb47-3e4df-pvz9j] [613_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0002' to sub-workflow 'CallGenome'
[2026-06-05T14:00:03.805322Z] [nf-93c3b5700b26584d347e24a2ba34eb47-3e4df-pvz9j] [613_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0002' to sub-workflow 'CallGenome'
[2026-06-05T14:00:03.805507Z] [nf-93c3b5700b26584d347e24a2ba34eb47-3e4df-pvz9j] [613_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0003' to sub-workflow 'CallGenome'
[2026-06-05T14:00:03.805694Z] [nf-93c3b5700b26584d347e24a2ba34eb47-3e4df-pvz9j] [613_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0003' to sub-workflow 'CallGenome'
[2026-06-05T14:00:03.806279Z] [nf-93c3b5700b26584d347e24a2ba34eb47-3e4df-pvz9j] [613_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0004' to sub-workflow 'CallGenome'
[2026-06-05T14:00:03.806383Z] [nf-93c3b5700b26584d347e24a2ba34eb47-3e4df-pvz9j] [613_1] [TaskManager] Launching command task: 'CallGenome+makeTmpDir' from sub-workflow 'CallGenome'
[2026-06-05T14:00:03.806551Z] [nf-93c3b5700b26584d347e24a2ba34eb47-3e4df-pvz9j] [613_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0004' to sub-workflow 'CallGenome'
[2026-06-05T14:00:03.806990Z] [nf-93c3b5700b26584d347e24a2ba34eb47-3e4df-pvz9j] [613_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0005' to sub-workflow 'CallGenome'
[2026-06-05T14:00:03.807331Z] [nf-93c3b5700b26584d347e24a2ba34eb47-3e4df-pvz9j] [613_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0005' to sub-workflow 'CallGenome'
[2026-06-05T14:00:03.809310Z] [nf-93c3b5700b26584d347e24a2ba34eb47-3e4df-pvz9j] [613_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0006' to sub-workflow 'CallGenome'
[2026-06-05T14:00:03.810231Z] [nf-93c3b5700b26584d347e24a2ba34eb47-3e4df-pvz9j] [613_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0006' to sub-workflow 'CallGenome'
[2026-06-05T14:00:03.810492Z] [nf-93c3b5700b26584d347e24a2ba34eb47-3e4df-pvz9j] [613_1] [TaskRunner:CallGenome+makeTmpDir] Task initiated on local node
[2026-06-05T14:00:03.810992Z] [nf-93c3b5700b26584d347e24a2ba34eb47-3e4df-pvz9j] [613_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0007' to sub-workflow 'CallGenome'
[2026-06-05T14:00:03.811307Z] [nf-93c3b5700b26584d347e24a2ba34eb47-3e4df-pvz9j] [613_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0007' to sub-workflow 'CallGenome'
[2026-06-05T14:00:03.811520Z] [nf-93c3b5700b26584d347e24a2ba34eb47-3e4df-pvz9j] [613_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0008' to sub-workflow 'CallGenome'
[2026-06-05T14:00:03.811590Z] [nf-93c3b5700b26584d347e24a2ba34eb47-3e4df-pvz9j] [613_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0008' to sub-workflow 'CallGenome'
[2026-06-05T14:00:03.811704Z] [nf-93c3b5700b26584d347e24a2ba34eb47-3e4df-pvz9j] [613_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0009' to sub-workflow 'CallGenome'
[2026-06-05T14:00:03.811775Z] [nf-93c3b5700b26584d347e24a2ba34eb47-3e4df-pvz9j] [613_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0009' to sub-workflow 'CallGenome'
[2026-06-05T14:00:03.811887Z] [nf-93c3b5700b26584d347e24a2ba34eb47-3e4df-pvz9j] [613_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0010' to sub-workflow 'CallGenome'
[2026-06-05T14:00:03.811948Z] [nf-93c3b5700b26584d347e24a2ba34eb47-3e4df-pvz9j] [613_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0010' to sub-workflow 'CallGenome'
[2026-06-05T14:00:03.812082Z] [nf-93c3b5700b26584d347e24a2ba34eb47-3e4df-pvz9j] [613_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0011' to sub-workflow 'CallGenome'
[2026-06-05T14:00:03.812195Z] [nf-93c3b5700b26584d347e24a2ba34eb47-3e4df-pvz9j] [613_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0011' to sub-workflow 'CallGenome'
[2026-06-05T14:00:03.812448Z] [nf-93c3b5700b26584d347e24a2ba34eb47-3e4df-pvz9j] [613_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0012' to sub-workflow 'CallGenome'
[2026-06-05T14:00:03.812769Z] [nf-93c3b5700b26584d347e24a2ba34eb47-3e4df-pvz9j] [613_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0012' to sub-workflow 'CallGenome'
[2026-06-05T14:00:03.812901Z] [nf-93c3b5700b26584d347e24a2ba34eb47-3e4df-pvz9j] [613_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0013' to sub-workflow 'CallGenome'
[2026-06-05T14:00:03.812973Z] [nf-93c3b5700b26584d347e24a2ba34eb47-3e4df-pvz9j] [613_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0013' to sub-workflow 'CallGenome'
[2026-06-05T14:00:03.813099Z] [nf-93c3b5700b26584d347e24a2ba34eb47-3e4df-pvz9j] [613_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0014' to sub-workflow 'CallGenome'
[2026-06-05T14:00:03.813164Z] [nf-93c3b5700b26584d347e24a2ba34eb47-3e4df-pvz9j] [613_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0014' to sub-workflow 'CallGenome'
[2026-06-05T14:00:03.813275Z] [nf-93c3b5700b26584d347e24a2ba34eb47-3e4df-pvz9j] [613_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0015' to sub-workflow 'CallGenome'
[2026-06-05T14:00:03.813355Z] [nf-93c3b5700b26584d347e24a2ba34eb47-3e4df-pvz9j] [613_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0015' to sub-workflow 'CallGenome'
[2026-06-05T14:00:03.813474Z] [nf-93c3b5700b26584d347e24a2ba34eb47-3e4df-pvz9j] [613_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0016' to sub-workflow 'CallGenome'
[2026-06-05T14:00:03.813541Z] [nf-93c3b5700b26584d347e24a2ba34eb47-3e4df-pvz9j] [613_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0016' to sub-workflow 'CallGenome'
[2026-06-05T14:00:03.813673Z] [nf-93c3b5700b26584d347e24a2ba34eb47-3e4df-pvz9j] [613_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0017' to sub-workflow 'CallGenome'
[2026-06-05T14:00:03.813736Z] [nf-93c3b5700b26584d347e24a2ba34eb47-3e4df-pvz9j] [613_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0017' to sub-workflow 'CallGenome'
[2026-06-05T14:00:03.814079Z] [nf-93c3b5700b26584d347e24a2ba34eb47-3e4df-pvz9j] [613_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0018' to sub-workflow 'CallGenome'
[2026-06-05T14:00:03.814405Z] [nf-93c3b5700b26584d347e24a2ba34eb47-3e4df-pvz9j] [613_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0018' to sub-workflow 'CallGenome'
[2026-06-05T14:00:03.814524Z] [nf-93c3b5700b26584d347e24a2ba34eb47-3e4df-pvz9j] [613_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0019' to sub-workflow 'CallGenome'
[2026-06-05T14:00:03.814587Z] [nf-93c3b5700b26584d347e24a2ba34eb47-3e4df-pvz9j] [613_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0019' to sub-workflow 'CallGenome'
[2026-06-05T14:00:03.815207Z] [nf-93c3b5700b26584d347e24a2ba34eb47-3e4df-pvz9j] [613_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0020' to sub-workflow 'CallGenome'
[2026-06-05T14:00:03.815270Z] [nf-93c3b5700b26584d347e24a2ba34eb47-3e4df-pvz9j] [613_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0020' to sub-workflow 'CallGenome'
[2026-06-05T14:00:03.815383Z] [nf-93c3b5700b26584d347e24a2ba34eb47-3e4df-pvz9j] [613_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_018_chr19_0000' to sub-workflow 'CallGenome'
[2026-06-05T14:00:03.815745Z] [nf-93c3b5700b26584d347e24a2ba34eb47-3e4df-pvz9j] [613_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_018_chr19_0000' to sub-workflow 'CallGenome'
[2026-06-05T14:00:03.816217Z] [nf-93c3b5700b26584d347e24a2ba34eb47-3e4df-pvz9j] [613_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_018_chr19_0001' to sub-workflow 'CallGenome'
[2026-06-05T14:00:03.816284Z] [nf-93c3b5700b26584d347e24a2ba34eb47-3e4df-pvz9j] [613_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_018_chr19_0001' to sub-workflow 'CallGenome'
[2026-06-05T14:00:03.816392Z] [nf-93c3b5700b26584d347e24a2ba34eb47-3e4df-pvz9j] [613_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_018_chr19_0002' to sub-workflow 'CallGenome'
[2026-06-05T14:00:03.816455Z] [nf-93c3b5700b26584d347e24a2ba34eb47-3e4df-pvz9j] [613_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_018_chr19_0002' to sub-workflow 'CallGenome'
[2026-06-05T14:00:03.816567Z] [nf-93c3b5700b26584d347e24a2ba34eb47-3e4df-pvz9j] [613_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_018_chr19_0003' to sub-workflow 'CallGenome'
[2026-06-05T14:00:03.816630Z] [nf-93c3b5700b26584d347e24a2ba34eb47-3e4df-pvz9j] [613_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_018_chr19_0003' to sub-workflow 'CallGenome'
[2026-06-05T14:00:03.816745Z] [nf-93c3b5700b26584d347e24a2ba34eb47-3e4df-pvz9j] [613_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_018_chr19_0004' to sub-workflow 'CallGenome'
[2026-06-05T14:00:03.816810Z] [nf-93c3b5700b26584d347e24a2ba34eb47-3e4df-pvz9j] [613_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_018_chr19_0004' to sub-workflow 'CallGenome'
[2026-06-05T14:00:03.816931Z] [nf-93c3b5700b26584d347e24a2ba34eb47-3e4df-pvz9j] [613_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_019_chr20_0000' to sub-workflow 'CallGenome'
[2026-06-05T14:00:03.816999Z] [nf-93c3b5700b26584d347e24a2ba34eb47-3e4df-pvz9j] [613_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_019_chr20_0000' to sub-workflow 'CallGenome'
[2026-06-05T14:00:03.817107Z] [nf-93c3b5700b26584d347e24a2ba34eb47-3e4df-pvz9j] [613_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_019_chr20_0001' to sub-workflow 'CallGenome'
[2026-06-05T14:00:03.817197Z] [nf-93c3b5700b26584d347e24a2ba34eb47-3e4df-pvz9j] [613_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_019_chr20_0001' to sub-workflow 'CallGenome'
[2026-06-05T14:00:03.817529Z] [nf-93c3b5700b26584d347e24a2ba34eb47-3e4df-pvz9j] [613_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_019_chr20_0002' to sub-workflow 'CallGenome'
[2026-06-05T14:00:03.818078Z] [nf-93c3b5700b26584d347e24a2ba34eb47-3e4df-pvz9j] [613_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_019_chr20_0002' to sub-workflow 'CallGenome'
[2026-06-05T14:00:03.818198Z] [nf-93c3b5700b26584d347e24a2ba34eb47-3e4df-pvz9j] [613_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_019_chr20_0003' to sub-workflow 'CallGenome'
[2026-06-05T14:00:03.818263Z] [nf-93c3b5700b26584d347e24a2ba34eb47-3e4df-pvz9j] [613_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_019_chr20_0003' to sub-workflow 'CallGenome'
[2026-06-05T14:00:03.818371Z] [nf-93c3b5700b26584d347e24a2ba34eb47-3e4df-pvz9j] [613_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_019_chr20_0004' to sub-workflow 'CallGenome'
[2026-06-05T14:00:03.818442Z] [nf-93c3b5700b26584d347e24a2ba34eb47-3e4df-pvz9j] [613_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_019_chr20_0004' to sub-workflow 'CallGenome'
[2026-06-05T14:00:03.834330Z] [nf-93c3b5700b26584d347e24a2ba34eb47-3e4df-pvz9j] [613_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_019_chr20_0005' to sub-workflow 'CallGenome'
[2026-06-05T14:00:03.834725Z] [nf-93c3b5700b26584d347e24a2ba34eb47-3e4df-pvz9j] [613_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_019_chr20_0005' to sub-workflow 'CallGenome'
[2026-06-05T14:00:03.834799Z] [nf-93c3b5700b26584d347e24a2ba34eb47-3e4df-pvz9j] [613_1] [WorkflowRunner] Adding command task 'CallGenome+completedAllGenomeSegments' to sub-workflow 'CallGenome'
[2026-06-05T14:00:03.834982Z] [nf-93c3b5700b26584d347e24a2ba34eb47-3e4df-pvz9j] [613_1] [WorkflowRunner] Adding command task 'CallGenome+SNV_concat_vcf' to sub-workflow 'CallGenome'
[2026-06-05T14:00:03.835054Z] [nf-93c3b5700b26584d347e24a2ba34eb47-3e4df-pvz9j] [613_1] [WorkflowRunner] Adding command task 'CallGenome+SNV_index_vcf' to sub-workflow 'CallGenome'
[2026-06-05T14:00:03.835157Z] [nf-93c3b5700b26584d347e24a2ba34eb47-3e4df-pvz9j] [613_1] [WorkflowRunner] Adding command task 'CallGenome+Indel_concat_vcf' to sub-workflow 'CallGenome'
[2026-06-05T14:00:03.835233Z] [nf-93c3b5700b26584d347e24a2ba34eb47-3e4df-pvz9j] [613_1] [WorkflowRunner] Adding command task 'CallGenome+Indel_index_vcf' to sub-workflow 'CallGenome'
[2026-06-05T14:00:03.835342Z] [nf-93c3b5700b26584d347e24a2ba34eb47-3e4df-pvz9j] [613_1] [WorkflowRunner] Adding command task 'CallGenome+mergeRunStats' to sub-workflow 'CallGenome'
[2026-06-05T14:00:03.836671Z] [nf-93c3b5700b26584d347e24a2ba34eb47-3e4df-pvz9j] [613_1] [WorkflowRunner] Adding command task 'CallGenome+removeTmpDir' to sub-workflow 'CallGenome'
[2026-06-05T14:00:03.837332Z] [nf-93c3b5700b26584d347e24a2ba34eb47-3e4df-pvz9j] [613_1] [TaskRunner:CallGenome] Finished task specification for sub-workflow
[2026-06-05T14:00:03.842803Z] [nf-93c3b5700b26584d347e24a2ba34eb47-3e4df-pvz9j] [613_1] [TaskManager] Completed command task: 'CallGenome+makeTmpDir' launched from sub-workflow 'CallGenome'
[2026-06-05T14:00:03.843427Z] [nf-93c3b5700b26584d347e24a2ba34eb47-3e4df-pvz9j] [613_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_018_chr19_0003' from sub-workflow 'CallGenome'
[2026-06-05T14:00:03.843769Z] [nf-93c3b5700b26584d347e24a2ba34eb47-3e4df-pvz9j] [613_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0014' from sub-workflow 'CallGenome'
[2026-06-05T14:00:03.844404Z] [nf-93c3b5700b26584d347e24a2ba34eb47-3e4df-pvz9j] [613_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0019' from sub-workflow 'CallGenome'
[2026-06-05T14:00:03.844963Z] [nf-93c3b5700b26584d347e24a2ba34eb47-3e4df-pvz9j] [613_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0000' from sub-workflow 'CallGenome'
[2026-06-05T14:00:03.845839Z] [nf-93c3b5700b26584d347e24a2ba34eb47-3e4df-pvz9j] [613_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_018_chr19_0001' from sub-workflow 'CallGenome'
[2026-06-05T14:00:03.846620Z] [nf-93c3b5700b26584d347e24a2ba34eb47-3e4df-pvz9j] [613_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0018' from sub-workflow 'CallGenome'
[2026-06-05T14:00:03.847880Z] [nf-93c3b5700b26584d347e24a2ba34eb47-3e4df-pvz9j] [613_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0006' from sub-workflow 'CallGenome'
[2026-06-05T14:00:03.849888Z] [nf-93c3b5700b26584d347e24a2ba34eb47-3e4df-pvz9j] [613_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_019_chr20_0000' from sub-workflow 'CallGenome'
[2026-06-05T14:00:03.857138Z] [nf-93c3b5700b26584d347e24a2ba34eb47-3e4df-pvz9j] [613_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_018_chr19_0003] Task initiated on local node
[2026-06-05T14:00:03.863548Z] [nf-93c3b5700b26584d347e24a2ba34eb47-3e4df-pvz9j] [613_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_018_chr19_0001] Task initiated on local node
[2026-06-05T14:00:03.867073Z] [nf-93c3b5700b26584d347e24a2ba34eb47-3e4df-pvz9j] [613_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0019] Task initiated on local node
[2026-06-05T14:00:03.872842Z] [nf-93c3b5700b26584d347e24a2ba34eb47-3e4df-pvz9j] [613_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0000] Task initiated on local node
[2026-06-05T14:00:03.873963Z] [nf-93c3b5700b26584d347e24a2ba34eb47-3e4df-pvz9j] [613_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0014] Task initiated on local node
[2026-06-05T14:00:03.874374Z] [nf-93c3b5700b26584d347e24a2ba34eb47-3e4df-pvz9j] [613_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0006] Task initiated on local node
[2026-06-05T14:00:03.877796Z] [nf-93c3b5700b26584d347e24a2ba34eb47-3e4df-pvz9j] [613_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0018] Task initiated on local node
[2026-06-05T14:00:03.880161Z] [nf-93c3b5700b26584d347e24a2ba34eb47-3e4df-pvz9j] [613_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_019_chr20_0000] Task initiated on local node
[2026-06-05T14:00:05.322977Z] [nf-93c3b5700b26584d347e24a2ba34eb47-3e4df-pvz9j] [613_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0000' launched from sub-workflow 'CallGenome'
[2026-06-05T14:00:05.323977Z] [nf-93c3b5700b26584d347e24a2ba34eb47-3e4df-pvz9j] [613_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0003' from sub-workflow 'CallGenome'
[2026-06-05T14:00:05.327193Z] [nf-93c3b5700b26584d347e24a2ba34eb47-3e4df-pvz9j] [613_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0003] Task initiated on local node
[2026-06-05T14:00:05.388728Z] [nf-93c3b5700b26584d347e24a2ba34eb47-3e4df-pvz9j] [613_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0019' launched from sub-workflow 'CallGenome'
[2026-06-05T14:00:05.389687Z] [nf-93c3b5700b26584d347e24a2ba34eb47-3e4df-pvz9j] [613_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_019_chr20_0003' from sub-workflow 'CallGenome'
[2026-06-05T14:00:05.393786Z] [nf-93c3b5700b26584d347e24a2ba34eb47-3e4df-pvz9j] [613_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_019_chr20_0003] Task initiated on local node
[2026-06-05T14:00:05.454550Z] [nf-93c3b5700b26584d347e24a2ba34eb47-3e4df-pvz9j] [613_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_019_chr20_0003' launched from sub-workflow 'CallGenome'
[2026-06-05T14:00:05.455415Z] [nf-93c3b5700b26584d347e24a2ba34eb47-3e4df-pvz9j] [613_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0009' from sub-workflow 'CallGenome'
[2026-06-05T14:00:05.459217Z] [nf-93c3b5700b26584d347e24a2ba34eb47-3e4df-pvz9j] [613_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0009] Task initiated on local node
[2026-06-05T14:00:05.570303Z] [nf-93c3b5700b26584d347e24a2ba34eb47-3e4df-pvz9j] [613_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0018' launched from sub-workflow 'CallGenome'
[2026-06-05T14:00:05.571108Z] [nf-93c3b5700b26584d347e24a2ba34eb47-3e4df-pvz9j] [613_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_019_chr20_0003' from sub-workflow 'CallGenome'
[2026-06-05T14:00:05.575603Z] [nf-93c3b5700b26584d347e24a2ba34eb47-3e4df-pvz9j] [613_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_019_chr20_0003] Task initiated on local node
[2026-06-05T14:00:05.603994Z] [nf-93c3b5700b26584d347e24a2ba34eb47-3e4df-pvz9j] [613_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0006' launched from sub-workflow 'CallGenome'
[2026-06-05T14:00:05.604879Z] [nf-93c3b5700b26584d347e24a2ba34eb47-3e4df-pvz9j] [613_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0001' from sub-workflow 'CallGenome'
[2026-06-05T14:00:05.607795Z] [nf-93c3b5700b26584d347e24a2ba34eb47-3e4df-pvz9j] [613_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0001] Task initiated on local node
[2026-06-05T14:00:05.612930Z] [nf-93c3b5700b26584d347e24a2ba34eb47-3e4df-pvz9j] [613_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_019_chr20_0003' launched from sub-workflow 'CallGenome'
[2026-06-05T14:00:05.613612Z] [nf-93c3b5700b26584d347e24a2ba34eb47-3e4df-pvz9j] [613_1] [TaskManager] Launching command task: 'CallGenome+fixVcfHeader_chromId_001_chr2_0000' from sub-workflow 'CallGenome'
[2026-06-05T14:00:05.616725Z] [nf-93c3b5700b26584d347e24a2ba34eb47-3e4df-pvz9j] [613_1] [TaskRunner:CallGenome+fixVcfHeader_chromId_001_chr2_0000] Task initiated on local node
[2026-06-05T14:00:05.677793Z] [nf-93c3b5700b26584d347e24a2ba34eb47-3e4df-pvz9j] [613_1] [TaskManager] Completed command task: 'CallGenome+fixVcfHeader_chromId_001_chr2_0000' launched from sub-workflow 'CallGenome'
[2026-06-05T14:00:05.678669Z] [nf-93c3b5700b26584d347e24a2ba34eb47-3e4df-pvz9j] [613_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0007' from sub-workflow 'CallGenome'
[2026-06-05T14:00:05.682795Z] [nf-93c3b5700b26584d347e24a2ba34eb47-3e4df-pvz9j] [613_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0007] Task initiated on local node
[2026-06-05T14:00:06.095198Z] [nf-93c3b5700b26584d347e24a2ba34eb47-3e4df-pvz9j] [613_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0014' launched from sub-workflow 'CallGenome'
[2026-06-05T14:00:06.096189Z] [nf-93c3b5700b26584d347e24a2ba34eb47-3e4df-pvz9j] [613_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_019_chr20_0005' from sub-workflow 'CallGenome'
[2026-06-05T14:00:06.100442Z] [nf-93c3b5700b26584d347e24a2ba34eb47-3e4df-pvz9j] [613_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_019_chr20_0005] Task initiated on local node
[2026-06-05T14:00:06.161339Z] [nf-93c3b5700b26584d347e24a2ba34eb47-3e4df-pvz9j] [613_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_019_chr20_0005' launched from sub-workflow 'CallGenome'
[2026-06-05T14:00:06.162266Z] [nf-93c3b5700b26584d347e24a2ba34eb47-3e4df-pvz9j] [613_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_018_chr19_0000' from sub-workflow 'CallGenome'
[2026-06-05T14:00:06.165751Z] [nf-93c3b5700b26584d347e24a2ba34eb47-3e4df-pvz9j] [613_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_018_chr19_0000] Task initiated on local node
[2026-06-05T14:00:06.178414Z] [nf-93c3b5700b26584d347e24a2ba34eb47-3e4df-pvz9j] [613_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_019_chr20_0000' launched from sub-workflow 'CallGenome'
[2026-06-05T14:00:06.179326Z] [nf-93c3b5700b26584d347e24a2ba34eb47-3e4df-pvz9j] [613_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_019_chr20_0000' from sub-workflow 'CallGenome'
[2026-06-05T14:00:06.182196Z] [nf-93c3b5700b26584d347e24a2ba34eb47-3e4df-pvz9j] [613_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_019_chr20_0000] Task initiated on local node
[2026-06-05T14:00:06.211301Z] [nf-93c3b5700b26584d347e24a2ba34eb47-3e4df-pvz9j] [613_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_018_chr19_0001' launched from sub-workflow 'CallGenome'
[2026-06-05T14:00:06.211997Z] [nf-93c3b5700b26584d347e24a2ba34eb47-3e4df-pvz9j] [613_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_018_chr19_0001' from sub-workflow 'CallGenome'
[2026-06-05T14:00:06.215038Z] [nf-93c3b5700b26584d347e24a2ba34eb47-3e4df-pvz9j] [613_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_018_chr19_0001] Task initiated on local node
[2026-06-05T14:00:06.227870Z] [nf-93c3b5700b26584d347e24a2ba34eb47-3e4df-pvz9j] [613_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_018_chr19_0000' launched from sub-workflow 'CallGenome'
[2026-06-05T14:00:06.227983Z] [nf-93c3b5700b26584d347e24a2ba34eb47-3e4df-pvz9j] [613_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_019_chr20_0000' launched from sub-workflow 'CallGenome'
[2026-06-05T14:00:06.228732Z] [nf-93c3b5700b26584d347e24a2ba34eb47-3e4df-pvz9j] [613_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0011' from sub-workflow 'CallGenome'
[2026-06-05T14:00:06.229034Z] [nf-93c3b5700b26584d347e24a2ba34eb47-3e4df-pvz9j] [613_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0016' from sub-workflow 'CallGenome'
[2026-06-05T14:00:06.236732Z] [nf-93c3b5700b26584d347e24a2ba34eb47-3e4df-pvz9j] [613_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0016] Task initiated on local node
[2026-06-05T14:00:06.261508Z] [nf-93c3b5700b26584d347e24a2ba34eb47-3e4df-pvz9j] [613_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_018_chr19_0001' launched from sub-workflow 'CallGenome'
[2026-06-05T14:00:06.262257Z] [nf-93c3b5700b26584d347e24a2ba34eb47-3e4df-pvz9j] [613_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0008' from sub-workflow 'CallGenome'
[2026-06-05T14:00:06.265933Z] [nf-93c3b5700b26584d347e24a2ba34eb47-3e4df-pvz9j] [613_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0008] Task initiated on local node
[2026-06-05T14:00:06.376833Z] [nf-93c3b5700b26584d347e24a2ba34eb47-3e4df-pvz9j] [613_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0001' launched from sub-workflow 'CallGenome'
[2026-06-05T14:00:06.377819Z] [nf-93c3b5700b26584d347e24a2ba34eb47-3e4df-pvz9j] [613_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0001' from sub-workflow 'CallGenome'
[2026-06-05T14:00:06.381336Z] [nf-93c3b5700b26584d347e24a2ba34eb47-3e4df-pvz9j] [613_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0001] Task initiated on local node
[2026-06-05T14:00:06.442648Z] [nf-93c3b5700b26584d347e24a2ba34eb47-3e4df-pvz9j] [613_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0001' launched from sub-workflow 'CallGenome'
[2026-06-05T14:00:06.443586Z] [nf-93c3b5700b26584d347e24a2ba34eb47-3e4df-pvz9j] [613_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_019_chr20_0005' from sub-workflow 'CallGenome'
[2026-06-05T14:00:06.446902Z] [nf-93c3b5700b26584d347e24a2ba34eb47-3e4df-pvz9j] [613_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_019_chr20_0005] Task initiated on local node
[2026-06-05T14:00:06.508307Z] [nf-93c3b5700b26584d347e24a2ba34eb47-3e4df-pvz9j] [613_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_019_chr20_0005' launched from sub-workflow 'CallGenome'
[2026-06-05T14:00:06.509356Z] [nf-93c3b5700b26584d347e24a2ba34eb47-3e4df-pvz9j] [613_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0018' from sub-workflow 'CallGenome'
[2026-06-05T14:00:06.512672Z] [nf-93c3b5700b26584d347e24a2ba34eb47-3e4df-pvz9j] [613_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0018] Task initiated on local node
[2026-06-05T14:00:06.573819Z] [nf-93c3b5700b26584d347e24a2ba34eb47-3e4df-pvz9j] [613_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0018' launched from sub-workflow 'CallGenome'
[2026-06-05T14:00:06.574713Z] [nf-93c3b5700b26584d347e24a2ba34eb47-3e4df-pvz9j] [613_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0002' from sub-workflow 'CallGenome'
[2026-06-05T14:00:06.578018Z] [nf-93c3b5700b26584d347e24a2ba34eb47-3e4df-pvz9j] [613_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0002] Task initiated on local node
[2026-06-05T14:00:06.689489Z] [nf-93c3b5700b26584d347e24a2ba34eb47-3e4df-pvz9j] [613_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0007' launched from sub-workflow 'CallGenome'
[2026-06-05T14:00:06.690409Z] [nf-93c3b5700b26584d347e24a2ba34eb47-3e4df-pvz9j] [613_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0005' from sub-workflow 'CallGenome'
[2026-06-05T14:00:06.693640Z] [nf-93c3b5700b26584d347e24a2ba34eb47-3e4df-pvz9j] [613_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0005] Task initiated on local node
[2026-06-05T14:00:06.855396Z] [nf-93c3b5700b26584d347e24a2ba34eb47-3e4df-pvz9j] [613_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0003' launched from sub-workflow 'CallGenome'
[2026-06-05T14:00:06.856284Z] [nf-93c3b5700b26584d347e24a2ba34eb47-3e4df-pvz9j] [613_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_018_chr19_0004' from sub-workflow 'CallGenome'
[2026-06-05T14:00:06.860383Z] [nf-93c3b5700b26584d347e24a2ba34eb47-3e4df-pvz9j] [613_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_018_chr19_0004] Task initiated on local node
[2026-06-05T14:00:06.921469Z] [nf-93c3b5700b26584d347e24a2ba34eb47-3e4df-pvz9j] [613_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_018_chr19_0003' launched from sub-workflow 'CallGenome'
[2026-06-05T14:00:06.922411Z] [nf-93c3b5700b26584d347e24a2ba34eb47-3e4df-pvz9j] [613_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0013' from sub-workflow 'CallGenome'
[2026-06-05T14:00:06.926097Z] [nf-93c3b5700b26584d347e24a2ba34eb47-3e4df-pvz9j] [613_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0013] Task initiated on local node
[2026-06-05T14:00:07.238335Z] [nf-93c3b5700b26584d347e24a2ba34eb47-3e4df-pvz9j] [613_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0009' launched from sub-workflow 'CallGenome'
[2026-06-05T14:00:07.239289Z] [nf-93c3b5700b26584d347e24a2ba34eb47-3e4df-pvz9j] [613_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0000' from sub-workflow 'CallGenome'
[2026-06-05T14:00:07.242594Z] [nf-93c3b5700b26584d347e24a2ba34eb47-3e4df-pvz9j] [613_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0000] Task initiated on local node
[2026-06-05T14:00:07.304169Z] [nf-93c3b5700b26584d347e24a2ba34eb47-3e4df-pvz9j] [613_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0000' launched from sub-workflow 'CallGenome'
[2026-06-05T14:00:07.305070Z] [nf-93c3b5700b26584d347e24a2ba34eb47-3e4df-pvz9j] [613_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_018_chr19_0003' from sub-workflow 'CallGenome'
[2026-06-05T14:00:07.308267Z] [nf-93c3b5700b26584d347e24a2ba34eb47-3e4df-pvz9j] [613_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_018_chr19_0003] Task initiated on local node
[2026-06-05T14:00:07.365993Z] [nf-93c3b5700b26584d347e24a2ba34eb47-3e4df-pvz9j] [613_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0011] Task initiated on local node
[2026-06-05T14:00:07.369467Z] [nf-93c3b5700b26584d347e24a2ba34eb47-3e4df-pvz9j] [613_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_018_chr19_0003' launched from sub-workflow 'CallGenome'
[2026-06-05T14:00:07.369570Z] [nf-93c3b5700b26584d347e24a2ba34eb47-3e4df-pvz9j] [613_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0016' launched from sub-workflow 'CallGenome'
[2026-06-05T14:00:07.370357Z] [nf-93c3b5700b26584d347e24a2ba34eb47-3e4df-pvz9j] [613_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0012' from sub-workflow 'CallGenome'
[2026-06-05T14:00:07.370744Z] [nf-93c3b5700b26584d347e24a2ba34eb47-3e4df-pvz9j] [613_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_018_chr19_0002' from sub-workflow 'CallGenome'
[2026-06-05T14:00:07.374624Z] [nf-93c3b5700b26584d347e24a2ba34eb47-3e4df-pvz9j] [613_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0012] Task initiated on local node
[2026-06-05T14:00:07.375638Z] [nf-93c3b5700b26584d347e24a2ba34eb47-3e4df-pvz9j] [613_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_018_chr19_0002] Task initiated on local node
[2026-06-05T14:00:07.987730Z] [nf-93c3b5700b26584d347e24a2ba34eb47-3e4df-pvz9j] [613_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0011' launched from sub-workflow 'CallGenome'
[2026-06-05T14:00:07.988763Z] [nf-93c3b5700b26584d347e24a2ba34eb47-3e4df-pvz9j] [613_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0011' from sub-workflow 'CallGenome'
[2026-06-05T14:00:07.992583Z] [nf-93c3b5700b26584d347e24a2ba34eb47-3e4df-pvz9j] [613_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0011] Task initiated on local node
[2026-06-05T14:00:08.053605Z] [nf-93c3b5700b26584d347e24a2ba34eb47-3e4df-pvz9j] [613_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0011' launched from sub-workflow 'CallGenome'
[2026-06-05T14:00:08.054432Z] [nf-93c3b5700b26584d347e24a2ba34eb47-3e4df-pvz9j] [613_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0010' from sub-workflow 'CallGenome'
[2026-06-05T14:00:08.057600Z] [nf-93c3b5700b26584d347e24a2ba34eb47-3e4df-pvz9j] [613_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0010] Task initiated on local node
[2026-06-05T14:00:08.269468Z] [nf-93c3b5700b26584d347e24a2ba34eb47-3e4df-pvz9j] [613_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0005' launched from sub-workflow 'CallGenome'
[2026-06-05T14:00:08.270349Z] [nf-93c3b5700b26584d347e24a2ba34eb47-3e4df-pvz9j] [613_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0005' from sub-workflow 'CallGenome'
[2026-06-05T14:00:08.273970Z] [nf-93c3b5700b26584d347e24a2ba34eb47-3e4df-pvz9j] [613_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0005] Task initiated on local node
[2026-06-05T14:00:08.335125Z] [nf-93c3b5700b26584d347e24a2ba34eb47-3e4df-pvz9j] [613_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0005' launched from sub-workflow 'CallGenome'
[2026-06-05T14:00:08.335253Z] [nf-93c3b5700b26584d347e24a2ba34eb47-3e4df-pvz9j] [613_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0008' launched from sub-workflow 'CallGenome'
[2026-06-05T14:00:08.336031Z] [nf-93c3b5700b26584d347e24a2ba34eb47-3e4df-pvz9j] [613_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0016' from sub-workflow 'CallGenome'
[2026-06-05T14:00:08.336407Z] [nf-93c3b5700b26584d347e24a2ba34eb47-3e4df-pvz9j] [613_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_019_chr20_0001' from sub-workflow 'CallGenome'
[2026-06-05T14:00:08.340146Z] [nf-93c3b5700b26584d347e24a2ba34eb47-3e4df-pvz9j] [613_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_019_chr20_0001] Task initiated on local node
[2026-06-05T14:00:08.401237Z] [nf-93c3b5700b26584d347e24a2ba34eb47-3e4df-pvz9j] [613_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0012' launched from sub-workflow 'CallGenome'
[2026-06-05T14:00:08.402053Z] [nf-93c3b5700b26584d347e24a2ba34eb47-3e4df-pvz9j] [613_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0017' from sub-workflow 'CallGenome'
[2026-06-05T14:00:08.405212Z] [nf-93c3b5700b26584d347e24a2ba34eb47-3e4df-pvz9j] [613_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0017] Task initiated on local node
[2026-06-05T14:00:08.466458Z] [nf-93c3b5700b26584d347e24a2ba34eb47-3e4df-pvz9j] [613_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0013' launched from sub-workflow 'CallGenome'
[2026-06-05T14:00:08.467219Z] [nf-93c3b5700b26584d347e24a2ba34eb47-3e4df-pvz9j] [613_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0013' from sub-workflow 'CallGenome'
[2026-06-05T14:00:08.471517Z] [nf-93c3b5700b26584d347e24a2ba34eb47-3e4df-pvz9j] [613_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0013] Task initiated on local node
[2026-06-05T14:00:08.532070Z] [nf-93c3b5700b26584d347e24a2ba34eb47-3e4df-pvz9j] [613_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0013' launched from sub-workflow 'CallGenome'
[2026-06-05T14:00:08.532940Z] [nf-93c3b5700b26584d347e24a2ba34eb47-3e4df-pvz9j] [613_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0007' from sub-workflow 'CallGenome'
[2026-06-05T14:00:08.536678Z] [nf-93c3b5700b26584d347e24a2ba34eb47-3e4df-pvz9j] [613_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0007] Task initiated on local node
[2026-06-05T14:00:08.597703Z] [nf-93c3b5700b26584d347e24a2ba34eb47-3e4df-pvz9j] [613_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_018_chr19_0002' launched from sub-workflow 'CallGenome'
[2026-06-05T14:00:08.597830Z] [nf-93c3b5700b26584d347e24a2ba34eb47-3e4df-pvz9j] [613_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0007' launched from sub-workflow 'CallGenome'
[2026-06-05T14:00:08.598673Z] [nf-93c3b5700b26584d347e24a2ba34eb47-3e4df-pvz9j] [613_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_018_chr19_0002' from sub-workflow 'CallGenome'
[2026-06-05T14:00:08.599036Z] [nf-93c3b5700b26584d347e24a2ba34eb47-3e4df-pvz9j] [613_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0006' from sub-workflow 'CallGenome'
[2026-06-05T14:00:08.603016Z] [nf-93c3b5700b26584d347e24a2ba34eb47-3e4df-pvz9j] [613_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0006] Task initiated on local node
[2026-06-05T14:00:08.647462Z] [nf-93c3b5700b26584d347e24a2ba34eb47-3e4df-pvz9j] [613_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_018_chr19_0002] Task initiated on local node
[2026-06-05T14:00:08.664217Z] [nf-93c3b5700b26584d347e24a2ba34eb47-3e4df-pvz9j] [613_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_018_chr19_0002' launched from sub-workflow 'CallGenome'
[2026-06-05T14:00:08.664358Z] [nf-93c3b5700b26584d347e24a2ba34eb47-3e4df-pvz9j] [613_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0006' launched from sub-workflow 'CallGenome'
[2026-06-05T14:00:08.665073Z] [nf-93c3b5700b26584d347e24a2ba34eb47-3e4df-pvz9j] [613_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0014' from sub-workflow 'CallGenome'
[2026-06-05T14:00:08.665487Z] [nf-93c3b5700b26584d347e24a2ba34eb47-3e4df-pvz9j] [613_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0020' from sub-workflow 'CallGenome'
[2026-06-05T14:00:08.669563Z] [nf-93c3b5700b26584d347e24a2ba34eb47-3e4df-pvz9j] [613_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0014] Task initiated on local node
[2026-06-05T14:00:08.670914Z] [nf-93c3b5700b26584d347e24a2ba34eb47-3e4df-pvz9j] [613_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0020] Task initiated on local node
[2026-06-05T14:00:08.730786Z] [nf-93c3b5700b26584d347e24a2ba34eb47-3e4df-pvz9j] [613_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0014' launched from sub-workflow 'CallGenome'
[2026-06-05T14:00:08.731422Z] [nf-93c3b5700b26584d347e24a2ba34eb47-3e4df-pvz9j] [613_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0003' from sub-workflow 'CallGenome'
[2026-06-05T14:00:08.734748Z] [nf-93c3b5700b26584d347e24a2ba34eb47-3e4df-pvz9j] [613_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0003] Task initiated on local node
[2026-06-05T14:00:08.795988Z] [nf-93c3b5700b26584d347e24a2ba34eb47-3e4df-pvz9j] [613_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0003' launched from sub-workflow 'CallGenome'
[2026-06-05T14:00:08.796789Z] [nf-93c3b5700b26584d347e24a2ba34eb47-3e4df-pvz9j] [613_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0009' from sub-workflow 'CallGenome'
[2026-06-05T14:00:08.801197Z] [nf-93c3b5700b26584d347e24a2ba34eb47-3e4df-pvz9j] [613_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0009] Task initiated on local node
[2026-06-05T14:00:08.858217Z] [nf-93c3b5700b26584d347e24a2ba34eb47-3e4df-pvz9j] [613_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0016] Task initiated on local node
[2026-06-05T14:00:08.861937Z] [nf-93c3b5700b26584d347e24a2ba34eb47-3e4df-pvz9j] [613_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0016' launched from sub-workflow 'CallGenome'
[2026-06-05T14:00:08.862006Z] [nf-93c3b5700b26584d347e24a2ba34eb47-3e4df-pvz9j] [613_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_019_chr20_0001' launched from sub-workflow 'CallGenome'
[2026-06-05T14:00:08.862039Z] [nf-93c3b5700b26584d347e24a2ba34eb47-3e4df-pvz9j] [613_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0009' launched from sub-workflow 'CallGenome'
[2026-06-05T14:00:08.862678Z] [nf-93c3b5700b26584d347e24a2ba34eb47-3e4df-pvz9j] [613_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_019_chr20_0001' from sub-workflow 'CallGenome'
[2026-06-05T14:00:08.863334Z] [nf-93c3b5700b26584d347e24a2ba34eb47-3e4df-pvz9j] [613_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0004' from sub-workflow 'CallGenome'
[2026-06-05T14:00:08.863717Z] [nf-93c3b5700b26584d347e24a2ba34eb47-3e4df-pvz9j] [613_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0019' from sub-workflow 'CallGenome'
[2026-06-05T14:00:08.867614Z] [nf-93c3b5700b26584d347e24a2ba34eb47-3e4df-pvz9j] [613_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_019_chr20_0001] Task initiated on local node
[2026-06-05T14:00:08.869341Z] [nf-93c3b5700b26584d347e24a2ba34eb47-3e4df-pvz9j] [613_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0019] Task initiated on local node
[2026-06-05T14:00:08.870887Z] [nf-93c3b5700b26584d347e24a2ba34eb47-3e4df-pvz9j] [613_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0004] Task initiated on local node
[2026-06-05T14:00:08.929103Z] [nf-93c3b5700b26584d347e24a2ba34eb47-3e4df-pvz9j] [613_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0019' launched from sub-workflow 'CallGenome'
[2026-06-05T14:00:08.929208Z] [nf-93c3b5700b26584d347e24a2ba34eb47-3e4df-pvz9j] [613_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_019_chr20_0001' launched from sub-workflow 'CallGenome'
[2026-06-05T14:00:08.929891Z] [nf-93c3b5700b26584d347e24a2ba34eb47-3e4df-pvz9j] [613_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0015' from sub-workflow 'CallGenome'
[2026-06-05T14:00:08.930261Z] [nf-93c3b5700b26584d347e24a2ba34eb47-3e4df-pvz9j] [613_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_019_chr20_0002' from sub-workflow 'CallGenome'
[2026-06-05T14:00:08.935156Z] [nf-93c3b5700b26584d347e24a2ba34eb47-3e4df-pvz9j] [613_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0015] Task initiated on local node
[2026-06-05T14:00:08.936110Z] [nf-93c3b5700b26584d347e24a2ba34eb47-3e4df-pvz9j] [613_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_019_chr20_0002] Task initiated on local node
[2026-06-05T14:00:09.045482Z] [nf-93c3b5700b26584d347e24a2ba34eb47-3e4df-pvz9j] [613_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_019_chr20_0002' launched from sub-workflow 'CallGenome'
[2026-06-05T14:00:09.046180Z] [nf-93c3b5700b26584d347e24a2ba34eb47-3e4df-pvz9j] [613_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_018_chr19_0000' from sub-workflow 'CallGenome'
[2026-06-05T14:00:09.049424Z] [nf-93c3b5700b26584d347e24a2ba34eb47-3e4df-pvz9j] [613_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_018_chr19_0000] Task initiated on local node
[2026-06-05T14:00:09.110807Z] [nf-93c3b5700b26584d347e24a2ba34eb47-3e4df-pvz9j] [613_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_018_chr19_0000' launched from sub-workflow 'CallGenome'
[2026-06-05T14:00:09.111517Z] [nf-93c3b5700b26584d347e24a2ba34eb47-3e4df-pvz9j] [613_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0008' from sub-workflow 'CallGenome'
[2026-06-05T14:00:09.114599Z] [nf-93c3b5700b26584d347e24a2ba34eb47-3e4df-pvz9j] [613_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0008] Task initiated on local node
[2026-06-05T14:00:09.175908Z] [nf-93c3b5700b26584d347e24a2ba34eb47-3e4df-pvz9j] [613_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0008' launched from sub-workflow 'CallGenome'
[2026-06-05T14:00:09.176594Z] [nf-93c3b5700b26584d347e24a2ba34eb47-3e4df-pvz9j] [613_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0012' from sub-workflow 'CallGenome'
[2026-06-05T14:00:09.180030Z] [nf-93c3b5700b26584d347e24a2ba34eb47-3e4df-pvz9j] [613_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0012] Task initiated on local node
[2026-06-05T14:00:09.241228Z] [nf-93c3b5700b26584d347e24a2ba34eb47-3e4df-pvz9j] [613_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0012' launched from sub-workflow 'CallGenome'
[2026-06-05T14:00:09.241337Z] [nf-93c3b5700b26584d347e24a2ba34eb47-3e4df-pvz9j] [613_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0010' launched from sub-workflow 'CallGenome'
[2026-06-05T14:00:09.241886Z] [nf-93c3b5700b26584d347e24a2ba34eb47-3e4df-pvz9j] [613_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0010' from sub-workflow 'CallGenome'
[2026-06-05T14:00:09.242226Z] [nf-93c3b5700b26584d347e24a2ba34eb47-3e4df-pvz9j] [613_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_019_chr20_0004' from sub-workflow 'CallGenome'
[2026-06-05T14:00:09.245759Z] [nf-93c3b5700b26584d347e24a2ba34eb47-3e4df-pvz9j] [613_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0010] Task initiated on local node
[2026-06-05T14:00:09.247399Z] [nf-93c3b5700b26584d347e24a2ba34eb47-3e4df-pvz9j] [613_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_019_chr20_0004] Task initiated on local node
[2026-06-05T14:00:09.307298Z] [nf-93c3b5700b26584d347e24a2ba34eb47-3e4df-pvz9j] [613_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0010' launched from sub-workflow 'CallGenome'
[2026-06-05T14:00:09.308008Z] [nf-93c3b5700b26584d347e24a2ba34eb47-3e4df-pvz9j] [613_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_019_chr20_0002' from sub-workflow 'CallGenome'
[2026-06-05T14:00:09.311280Z] [nf-93c3b5700b26584d347e24a2ba34eb47-3e4df-pvz9j] [613_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_019_chr20_0002] Task initiated on local node
[2026-06-05T14:00:09.315925Z] [nf-93c3b5700b26584d347e24a2ba34eb47-3e4df-pvz9j] [613_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_019_chr20_0004' launched from sub-workflow 'CallGenome'
[2026-06-05T14:00:09.316352Z] [nf-93c3b5700b26584d347e24a2ba34eb47-3e4df-pvz9j] [613_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_019_chr20_0004' from sub-workflow 'CallGenome'
[2026-06-05T14:00:09.319269Z] [nf-93c3b5700b26584d347e24a2ba34eb47-3e4df-pvz9j] [613_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_019_chr20_0004] Task initiated on local node
[2026-06-05T14:00:09.348563Z] [nf-93c3b5700b26584d347e24a2ba34eb47-3e4df-pvz9j] [613_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_019_chr20_0002' launched from sub-workflow 'CallGenome'
[2026-06-05T14:00:09.356640Z] [nf-93c3b5700b26584d347e24a2ba34eb47-3e4df-pvz9j] [613_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_019_chr20_0004' launched from sub-workflow 'CallGenome'
[2026-06-05T14:00:10.474382Z] [nf-93c3b5700b26584d347e24a2ba34eb47-3e4df-pvz9j] [613_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0002' launched from sub-workflow 'CallGenome'
[2026-06-05T14:00:10.475048Z] [nf-93c3b5700b26584d347e24a2ba34eb47-3e4df-pvz9j] [613_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0002' from sub-workflow 'CallGenome'
[2026-06-05T14:00:10.478202Z] [nf-93c3b5700b26584d347e24a2ba34eb47-3e4df-pvz9j] [613_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0002] Task initiated on local node
[2026-06-05T14:00:10.539375Z] [nf-93c3b5700b26584d347e24a2ba34eb47-3e4df-pvz9j] [613_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0002' launched from sub-workflow 'CallGenome'
[2026-06-05T14:00:10.603824Z] [nf-93c3b5700b26584d347e24a2ba34eb47-3e4df-pvz9j] [613_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0004' launched from sub-workflow 'CallGenome'
[2026-06-05T14:00:10.604596Z] [nf-93c3b5700b26584d347e24a2ba34eb47-3e4df-pvz9j] [613_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0004' from sub-workflow 'CallGenome'
[2026-06-05T14:00:10.607547Z] [nf-93c3b5700b26584d347e24a2ba34eb47-3e4df-pvz9j] [613_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0004] Task initiated on local node
[2026-06-05T14:00:10.669219Z] [nf-93c3b5700b26584d347e24a2ba34eb47-3e4df-pvz9j] [613_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0004' launched from sub-workflow 'CallGenome'
[2026-06-05T14:00:10.934208Z] [nf-93c3b5700b26584d347e24a2ba34eb47-3e4df-pvz9j] [613_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0015' launched from sub-workflow 'CallGenome'
[2026-06-05T14:00:10.935006Z] [nf-93c3b5700b26584d347e24a2ba34eb47-3e4df-pvz9j] [613_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0015' from sub-workflow 'CallGenome'
[2026-06-05T14:00:10.938756Z] [nf-93c3b5700b26584d347e24a2ba34eb47-3e4df-pvz9j] [613_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0015] Task initiated on local node
[2026-06-05T14:00:10.999894Z] [nf-93c3b5700b26584d347e24a2ba34eb47-3e4df-pvz9j] [613_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0015' launched from sub-workflow 'CallGenome'
[2026-06-05T14:00:11.315125Z] [nf-93c3b5700b26584d347e24a2ba34eb47-3e4df-pvz9j] [613_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0017' launched from sub-workflow 'CallGenome'
[2026-06-05T14:00:11.315852Z] [nf-93c3b5700b26584d347e24a2ba34eb47-3e4df-pvz9j] [613_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0017' from sub-workflow 'CallGenome'
[2026-06-05T14:00:11.318813Z] [nf-93c3b5700b26584d347e24a2ba34eb47-3e4df-pvz9j] [613_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0017] Task initiated on local node
[2026-06-05T14:00:11.380393Z] [nf-93c3b5700b26584d347e24a2ba34eb47-3e4df-pvz9j] [613_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0017' launched from sub-workflow 'CallGenome'
[2026-06-05T14:00:11.595748Z] [nf-93c3b5700b26584d347e24a2ba34eb47-3e4df-pvz9j] [613_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_018_chr19_0004' launched from sub-workflow 'CallGenome'
[2026-06-05T14:00:11.596357Z] [nf-93c3b5700b26584d347e24a2ba34eb47-3e4df-pvz9j] [613_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_018_chr19_0004' from sub-workflow 'CallGenome'
[2026-06-05T14:00:11.599543Z] [nf-93c3b5700b26584d347e24a2ba34eb47-3e4df-pvz9j] [613_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_018_chr19_0004] Task initiated on local node
[2026-06-05T14:00:11.660977Z] [nf-93c3b5700b26584d347e24a2ba34eb47-3e4df-pvz9j] [613_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_018_chr19_0004' launched from sub-workflow 'CallGenome'
[2026-06-05T14:00:11.775734Z] [nf-93c3b5700b26584d347e24a2ba34eb47-3e4df-pvz9j] [613_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0020' launched from sub-workflow 'CallGenome'
[2026-06-05T14:00:11.776269Z] [nf-93c3b5700b26584d347e24a2ba34eb47-3e4df-pvz9j] [613_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0020' from sub-workflow 'CallGenome'
[2026-06-05T14:00:11.779508Z] [nf-93c3b5700b26584d347e24a2ba34eb47-3e4df-pvz9j] [613_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0020] Task initiated on local node
[2026-06-05T14:00:11.840958Z] [nf-93c3b5700b26584d347e24a2ba34eb47-3e4df-pvz9j] [613_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0020' launched from sub-workflow 'CallGenome'
[2026-06-05T14:00:11.841454Z] [nf-93c3b5700b26584d347e24a2ba34eb47-3e4df-pvz9j] [613_1] [TaskManager] Completed command task: 'CallGenome+completedAllGenomeSegments' launched from sub-workflow 'CallGenome'
[2026-06-05T14:00:11.841716Z] [nf-93c3b5700b26584d347e24a2ba34eb47-3e4df-pvz9j] [613_1] [TaskManager] Launching command task: 'CallGenome+mergeRunStats' from sub-workflow 'CallGenome'
[2026-06-05T14:00:11.842303Z] [nf-93c3b5700b26584d347e24a2ba34eb47-3e4df-pvz9j] [613_1] [TaskManager] Launching command task: 'CallGenome+SNV_concat_vcf' from sub-workflow 'CallGenome'
[2026-06-05T14:00:11.842730Z] [nf-93c3b5700b26584d347e24a2ba34eb47-3e4df-pvz9j] [613_1] [TaskManager] Launching command task: 'CallGenome+Indel_concat_vcf' from sub-workflow 'CallGenome'
[2026-06-05T14:00:11.847536Z] [nf-93c3b5700b26584d347e24a2ba34eb47-3e4df-pvz9j] [613_1] [TaskRunner:CallGenome+SNV_concat_vcf] Task initiated on local node
[2026-06-05T14:00:11.848973Z] [nf-93c3b5700b26584d347e24a2ba34eb47-3e4df-pvz9j] [613_1] [TaskRunner:CallGenome+Indel_concat_vcf] Task initiated on local node
[2026-06-05T14:00:11.850204Z] [nf-93c3b5700b26584d347e24a2ba34eb47-3e4df-pvz9j] [613_1] [TaskRunner:CallGenome+mergeRunStats] Task initiated on local node
[2026-06-05T14:00:11.908046Z] [nf-93c3b5700b26584d347e24a2ba34eb47-3e4df-pvz9j] [613_1] [TaskManager] Completed command task: 'CallGenome+Indel_concat_vcf' launched from sub-workflow 'CallGenome'
[2026-06-05T14:00:11.908153Z] [nf-93c3b5700b26584d347e24a2ba34eb47-3e4df-pvz9j] [613_1] [TaskManager] Completed command task: 'CallGenome+SNV_concat_vcf' launched from sub-workflow 'CallGenome'
[2026-06-05T14:00:11.908184Z] [nf-93c3b5700b26584d347e24a2ba34eb47-3e4df-pvz9j] [613_1] [TaskManager] Completed command task: 'CallGenome+mergeRunStats' launched from sub-workflow 'CallGenome'
[2026-06-05T14:00:11.908571Z] [nf-93c3b5700b26584d347e24a2ba34eb47-3e4df-pvz9j] [613_1] [TaskManager] Launching command task: 'CallGenome+Indel_index_vcf' from sub-workflow 'CallGenome'
[2026-06-05T14:00:11.909146Z] [nf-93c3b5700b26584d347e24a2ba34eb47-3e4df-pvz9j] [613_1] [TaskManager] Launching command task: 'CallGenome+SNV_index_vcf' from sub-workflow 'CallGenome'
[2026-06-05T14:00:11.912918Z] [nf-93c3b5700b26584d347e24a2ba34eb47-3e4df-pvz9j] [613_1] [TaskRunner:CallGenome+SNV_index_vcf] Task initiated on local node
[2026-06-05T14:00:11.913946Z] [nf-93c3b5700b26584d347e24a2ba34eb47-3e4df-pvz9j] [613_1] [TaskRunner:CallGenome+Indel_index_vcf] Task initiated on local node
[2026-06-05T14:00:11.973822Z] [nf-93c3b5700b26584d347e24a2ba34eb47-3e4df-pvz9j] [613_1] [TaskManager] Completed command task: 'CallGenome+SNV_index_vcf' launched from sub-workflow 'CallGenome'
[2026-06-05T14:00:11.973921Z] [nf-93c3b5700b26584d347e24a2ba34eb47-3e4df-pvz9j] [613_1] [TaskManager] Completed command task: 'CallGenome+Indel_index_vcf' launched from sub-workflow 'CallGenome'
[2026-06-05T14:00:11.974240Z] [nf-93c3b5700b26584d347e24a2ba34eb47-3e4df-pvz9j] [613_1] [TaskManager] Launching command task: 'CallGenome+removeTmpDir' from sub-workflow 'CallGenome'
[2026-06-05T14:00:11.977328Z] [nf-93c3b5700b26584d347e24a2ba34eb47-3e4df-pvz9j] [613_1] [TaskRunner:CallGenome+removeTmpDir] Task initiated on local node
[2026-06-05T14:00:12.039241Z] [nf-93c3b5700b26584d347e24a2ba34eb47-3e4df-pvz9j] [613_1] [TaskManager] Completed command task: 'CallGenome+removeTmpDir' launched from sub-workflow 'CallGenome'
[2026-06-05T14:00:14.361140Z] [nf-93c3b5700b26584d347e24a2ba34eb47-3e4df-pvz9j] [613_1] [TaskManager] Completed sub-workflow task: 'CallGenome' launched from master workflow
[2026-06-05T14:00:22.684505Z] [nf-93c3b5700b26584d347e24a2ba34eb47-3e4df-pvz9j] [613_1] [WorkflowRunner] Strelka somatic workflow successfully completed.
[2026-06-05T14:00:22.684505Z] [nf-93c3b5700b26584d347e24a2ba34eb47-3e4df-pvz9j] [613_1] [WorkflowRunner] 
[2026-06-05T14:00:22.684505Z] [nf-93c3b5700b26584d347e24a2ba34eb47-3e4df-pvz9j] [613_1] [WorkflowRunner] 	workflow version: 2.9.10
[2026-06-05T14:00:22.684587Z] [nf-93c3b5700b26584d347e24a2ba34eb47-3e4df-pvz9j] [613_1] [WorkflowRunner] 
[2026-06-05T14:00:22.684596Z] [nf-93c3b5700b26584d347e24a2ba34eb47-3e4df-pvz9j] [613_1] [WorkflowRunner] Workflow successfully completed all tasks
[2026-06-05T14:00:22.684604Z] [nf-93c3b5700b26584d347e24a2ba34eb47-3e4df-pvz9j] [613_1] [WorkflowRunner] Elapsed time for full workflow: 18 sec