File Info

Filename
.command.log
Full Path
s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/e3/503de90c5758a7974ce8ed69ec2a1d/.command.log
Size
61.6 KB
Task
DAQ:CONTROL_VARIANT_CALLING:CONTROL_SOMATIC_VC:BAM_VARIANT_CALLING_SOMATIC_STRELKA:STRELKA_SOMATIC (positive_somatic_control_2;chr9_110971973-110972217.bed)
Attempt

Content

View in new tab 
  Downloading: s3://natera-platform-sandbox/pipeline-resources/ngi-igenomes/igenomes/Homo_sapiens/GATK/GRCh38/Sequence/WholeGenomeFasta/Homo_sapiens_assembly38.fasta
  Downloading: s3://natera-platform-sandbox/pipeline-resources/AIH/dna_daq/stored-normals/reference-NA12878-downsampled-500k.bam
  Downloading: s3://natera-platform-sandbox/pipeline-resources/ngi-igenomes/igenomes/Homo_sapiens/GATK/GRCh38/Annotation/intervals/altera_padded_intervals/scatter/chr9_110971973-110972217.bed.gz
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/e3/503de90c5758a7974ce8ed69ec2a1d/.command.sh
  Downloading: s3://natera-platform-sandbox/pipeline-resources/ngi-igenomes/igenomes/Homo_sapiens/GATK/GRCh38/Sequence/WholeGenomeFasta/Homo_sapiens_assembly38.fasta.fai
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/50/509fa580b3dd16e8438dcd8edd0905/Sig_18_tissue.recalibrated.bam
  Downloading: s3://natera-platform-sandbox/pipeline-resources/AIH/dna_daq/stored-normals/reference-NA12878-downsampled-500k.bam.bai
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/50/509fa580b3dd16e8438dcd8edd0905/Sig_18_tissue.recalibrated.bam.bai
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/e3/503de90c5758a7974ce8ed69ec2a1d/.command.run
  Downloading: s3://natera-platform-sandbox/pipeline-resources/ngi-igenomes/igenomes/Homo_sapiens/GATK/GRCh38/Annotation/intervals/altera_padded_intervals/scatter/chr9_110971973-110972217.bed.gz.tbi
==> STAGING COMPLETE (10 inputs)


Successfully created workflow run script.
To execute the workflow, run the following script and set appropriate options:

/var/tmp/strelka/runWorkflow.py
[2026-06-05T13:59:49.498660Z] [nf-e3503de90c5758a7974ce8ed69ec2a1d-db1bb-5m77g] [618_1] [WorkflowRunner] Initiating pyFlow run
[2026-06-05T13:59:49.500077Z] [nf-e3503de90c5758a7974ce8ed69ec2a1d-db1bb-5m77g] [618_1] [WorkflowRunner] pyFlowClientWorkflowClass: StrelkaSomaticWorkflow
[2026-06-05T13:59:49.500101Z] [nf-e3503de90c5758a7974ce8ed69ec2a1d-db1bb-5m77g] [618_1] [WorkflowRunner] pyFlowVersion: 1.1.20
[2026-06-05T13:59:49.500106Z] [nf-e3503de90c5758a7974ce8ed69ec2a1d-db1bb-5m77g] [618_1] [WorkflowRunner] pythonVersion: 2.7.15.final.0
[2026-06-05T13:59:49.500111Z] [nf-e3503de90c5758a7974ce8ed69ec2a1d-db1bb-5m77g] [618_1] [WorkflowRunner] WorkingDir: '/tmp/nxf.XXXX27PHBF'
[2026-06-05T13:59:49.500115Z] [nf-e3503de90c5758a7974ce8ed69ec2a1d-db1bb-5m77g] [618_1] [WorkflowRunner] ProcessCmdLine: '/var/tmp/strelka/runWorkflow.py -m local -j 8'
[2026-06-05T13:59:49.500120Z] [nf-e3503de90c5758a7974ce8ed69ec2a1d-db1bb-5m77g] [618_1] [WorkflowRunner] [RunParameters] mode: local
[2026-06-05T13:59:49.500124Z] [nf-e3503de90c5758a7974ce8ed69ec2a1d-db1bb-5m77g] [618_1] [WorkflowRunner] [RunParameters] nCores: 8
[2026-06-05T13:59:49.500127Z] [nf-e3503de90c5758a7974ce8ed69ec2a1d-db1bb-5m77g] [618_1] [WorkflowRunner] [RunParameters] memMb: 3096076
[2026-06-05T13:59:49.500131Z] [nf-e3503de90c5758a7974ce8ed69ec2a1d-db1bb-5m77g] [618_1] [WorkflowRunner] [RunParameters] dataDir: /var/tmp/strelka/workspace/pyflow.data
[2026-06-05T13:59:49.500134Z] [nf-e3503de90c5758a7974ce8ed69ec2a1d-db1bb-5m77g] [618_1] [WorkflowRunner] [RunParameters] isDryRun: False
[2026-06-05T13:59:49.500138Z] [nf-e3503de90c5758a7974ce8ed69ec2a1d-db1bb-5m77g] [618_1] [WorkflowRunner] [RunParameters] isContinue: False
[2026-06-05T13:59:49.500141Z] [nf-e3503de90c5758a7974ce8ed69ec2a1d-db1bb-5m77g] [618_1] [WorkflowRunner] [RunParameters] isForceContinue: True
[2026-06-05T13:59:49.500145Z] [nf-e3503de90c5758a7974ce8ed69ec2a1d-db1bb-5m77g] [618_1] [WorkflowRunner] [RunParameters] mailTo: ''
[2026-06-05T13:59:49.500563Z] [nf-e3503de90c5758a7974ce8ed69ec2a1d-db1bb-5m77g] [618_1] [TaskRunner:masterWorkflow] Starting task specification for master workflow
[2026-06-05T13:59:49.500668Z] [nf-e3503de90c5758a7974ce8ed69ec2a1d-db1bb-5m77g] [618_1] [StrelkaSomaticWorkflow] Initiating Strelka somatic workflow version: 2.9.10
[2026-06-05T13:59:49.506793Z] [nf-e3503de90c5758a7974ce8ed69ec2a1d-db1bb-5m77g] [618_1] [WorkflowRunner] Adding sub-workflow task 'CallGenome' to master workflow
[2026-06-05T13:59:49.507607Z] [nf-e3503de90c5758a7974ce8ed69ec2a1d-db1bb-5m77g] [618_1] [TaskManager] Launching sub-workflow task: 'CallGenome' from master workflow
[2026-06-05T13:59:49.507874Z] [nf-e3503de90c5758a7974ce8ed69ec2a1d-db1bb-5m77g] [618_1] [TaskRunner:CallGenome] Starting task specification for sub-workflow
[2026-06-05T13:59:49.508098Z] [nf-e3503de90c5758a7974ce8ed69ec2a1d-db1bb-5m77g] [618_1] [WorkflowRunner] Adding command task 'CallGenome+makeTmpDir' to sub-workflow 'CallGenome'
[2026-06-05T13:59:49.508241Z] [nf-e3503de90c5758a7974ce8ed69ec2a1d-db1bb-5m77g] [618_1] [TaskRunner:masterWorkflow] Finished task specification for master workflow
[2026-06-05T13:59:49.509041Z] [nf-e3503de90c5758a7974ce8ed69ec2a1d-db1bb-5m77g] [618_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_008_chr9_0000' to sub-workflow 'CallGenome'
[2026-06-05T13:59:49.509145Z] [nf-e3503de90c5758a7974ce8ed69ec2a1d-db1bb-5m77g] [618_1] [WorkflowRunner] Adding command task 'CallGenome+fixVcfHeader_chromId_008_chr9_0000' to sub-workflow 'CallGenome'
[2026-06-05T13:59:49.509501Z] [nf-e3503de90c5758a7974ce8ed69ec2a1d-db1bb-5m77g] [618_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_008_chr9_0000' to sub-workflow 'CallGenome'
[2026-06-05T13:59:49.509700Z] [nf-e3503de90c5758a7974ce8ed69ec2a1d-db1bb-5m77g] [618_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_008_chr9_0001' to sub-workflow 'CallGenome'
[2026-06-05T13:59:49.509859Z] [nf-e3503de90c5758a7974ce8ed69ec2a1d-db1bb-5m77g] [618_1] [TaskManager] Launching command task: 'CallGenome+makeTmpDir' from sub-workflow 'CallGenome'
[2026-06-05T13:59:49.510204Z] [nf-e3503de90c5758a7974ce8ed69ec2a1d-db1bb-5m77g] [618_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_008_chr9_0001' to sub-workflow 'CallGenome'
[2026-06-05T13:59:49.510896Z] [nf-e3503de90c5758a7974ce8ed69ec2a1d-db1bb-5m77g] [618_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_008_chr9_0002' to sub-workflow 'CallGenome'
[2026-06-05T13:59:49.511162Z] [nf-e3503de90c5758a7974ce8ed69ec2a1d-db1bb-5m77g] [618_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_008_chr9_0002' to sub-workflow 'CallGenome'
[2026-06-05T13:59:49.511364Z] [nf-e3503de90c5758a7974ce8ed69ec2a1d-db1bb-5m77g] [618_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_008_chr9_0003' to sub-workflow 'CallGenome'
[2026-06-05T13:59:49.513339Z] [nf-e3503de90c5758a7974ce8ed69ec2a1d-db1bb-5m77g] [618_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_008_chr9_0003' to sub-workflow 'CallGenome'
[2026-06-05T13:59:49.514041Z] [nf-e3503de90c5758a7974ce8ed69ec2a1d-db1bb-5m77g] [618_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_008_chr9_0004' to sub-workflow 'CallGenome'
[2026-06-05T13:59:49.514593Z] [nf-e3503de90c5758a7974ce8ed69ec2a1d-db1bb-5m77g] [618_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_008_chr9_0004' to sub-workflow 'CallGenome'
[2026-06-05T13:59:49.515062Z] [nf-e3503de90c5758a7974ce8ed69ec2a1d-db1bb-5m77g] [618_1] [TaskRunner:CallGenome+makeTmpDir] Task initiated on local node
[2026-06-05T13:59:49.515352Z] [nf-e3503de90c5758a7974ce8ed69ec2a1d-db1bb-5m77g] [618_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_008_chr9_0005' to sub-workflow 'CallGenome'
[2026-06-05T13:59:49.515566Z] [nf-e3503de90c5758a7974ce8ed69ec2a1d-db1bb-5m77g] [618_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_008_chr9_0005' to sub-workflow 'CallGenome'
[2026-06-05T13:59:49.515731Z] [nf-e3503de90c5758a7974ce8ed69ec2a1d-db1bb-5m77g] [618_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_008_chr9_0006' to sub-workflow 'CallGenome'
[2026-06-05T13:59:49.515805Z] [nf-e3503de90c5758a7974ce8ed69ec2a1d-db1bb-5m77g] [618_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_008_chr9_0006' to sub-workflow 'CallGenome'
[2026-06-05T13:59:49.515925Z] [nf-e3503de90c5758a7974ce8ed69ec2a1d-db1bb-5m77g] [618_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_008_chr9_0007' to sub-workflow 'CallGenome'
[2026-06-05T13:59:49.515992Z] [nf-e3503de90c5758a7974ce8ed69ec2a1d-db1bb-5m77g] [618_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_008_chr9_0007' to sub-workflow 'CallGenome'
[2026-06-05T13:59:49.516206Z] [nf-e3503de90c5758a7974ce8ed69ec2a1d-db1bb-5m77g] [618_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_008_chr9_0008' to sub-workflow 'CallGenome'
[2026-06-05T13:59:49.516273Z] [nf-e3503de90c5758a7974ce8ed69ec2a1d-db1bb-5m77g] [618_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_008_chr9_0008' to sub-workflow 'CallGenome'
[2026-06-05T13:59:49.516540Z] [nf-e3503de90c5758a7974ce8ed69ec2a1d-db1bb-5m77g] [618_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_008_chr9_0009' to sub-workflow 'CallGenome'
[2026-06-05T13:59:49.517048Z] [nf-e3503de90c5758a7974ce8ed69ec2a1d-db1bb-5m77g] [618_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_008_chr9_0009' to sub-workflow 'CallGenome'
[2026-06-05T13:59:49.517261Z] [nf-e3503de90c5758a7974ce8ed69ec2a1d-db1bb-5m77g] [618_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_008_chr9_0010' to sub-workflow 'CallGenome'
[2026-06-05T13:59:49.517336Z] [nf-e3503de90c5758a7974ce8ed69ec2a1d-db1bb-5m77g] [618_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_008_chr9_0010' to sub-workflow 'CallGenome'
[2026-06-05T13:59:49.517767Z] [nf-e3503de90c5758a7974ce8ed69ec2a1d-db1bb-5m77g] [618_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_008_chr9_0011' to sub-workflow 'CallGenome'
[2026-06-05T13:59:49.517919Z] [nf-e3503de90c5758a7974ce8ed69ec2a1d-db1bb-5m77g] [618_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_008_chr9_0011' to sub-workflow 'CallGenome'
[2026-06-05T13:59:49.518264Z] [nf-e3503de90c5758a7974ce8ed69ec2a1d-db1bb-5m77g] [618_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_022_chrX_0000' to sub-workflow 'CallGenome'
[2026-06-05T13:59:49.518332Z] [nf-e3503de90c5758a7974ce8ed69ec2a1d-db1bb-5m77g] [618_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_022_chrX_0000' to sub-workflow 'CallGenome'
[2026-06-05T13:59:49.518444Z] [nf-e3503de90c5758a7974ce8ed69ec2a1d-db1bb-5m77g] [618_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_022_chrX_0001' to sub-workflow 'CallGenome'
[2026-06-05T13:59:49.518512Z] [nf-e3503de90c5758a7974ce8ed69ec2a1d-db1bb-5m77g] [618_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_022_chrX_0001' to sub-workflow 'CallGenome'
[2026-06-05T13:59:49.518635Z] [nf-e3503de90c5758a7974ce8ed69ec2a1d-db1bb-5m77g] [618_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_022_chrX_0002' to sub-workflow 'CallGenome'
[2026-06-05T13:59:49.518697Z] [nf-e3503de90c5758a7974ce8ed69ec2a1d-db1bb-5m77g] [618_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_022_chrX_0002' to sub-workflow 'CallGenome'
[2026-06-05T13:59:49.518811Z] [nf-e3503de90c5758a7974ce8ed69ec2a1d-db1bb-5m77g] [618_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_022_chrX_0003' to sub-workflow 'CallGenome'
[2026-06-05T13:59:49.518876Z] [nf-e3503de90c5758a7974ce8ed69ec2a1d-db1bb-5m77g] [618_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_022_chrX_0003' to sub-workflow 'CallGenome'
[2026-06-05T13:59:49.518987Z] [nf-e3503de90c5758a7974ce8ed69ec2a1d-db1bb-5m77g] [618_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_022_chrX_0004' to sub-workflow 'CallGenome'
[2026-06-05T13:59:49.519049Z] [nf-e3503de90c5758a7974ce8ed69ec2a1d-db1bb-5m77g] [618_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_022_chrX_0004' to sub-workflow 'CallGenome'
[2026-06-05T13:59:49.519159Z] [nf-e3503de90c5758a7974ce8ed69ec2a1d-db1bb-5m77g] [618_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_022_chrX_0005' to sub-workflow 'CallGenome'
[2026-06-05T13:59:49.519233Z] [nf-e3503de90c5758a7974ce8ed69ec2a1d-db1bb-5m77g] [618_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_022_chrX_0005' to sub-workflow 'CallGenome'
[2026-06-05T13:59:49.519475Z] [nf-e3503de90c5758a7974ce8ed69ec2a1d-db1bb-5m77g] [618_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_022_chrX_0006' to sub-workflow 'CallGenome'
[2026-06-05T13:59:49.519820Z] [nf-e3503de90c5758a7974ce8ed69ec2a1d-db1bb-5m77g] [618_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_022_chrX_0006' to sub-workflow 'CallGenome'
[2026-06-05T13:59:49.519932Z] [nf-e3503de90c5758a7974ce8ed69ec2a1d-db1bb-5m77g] [618_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_022_chrX_0007' to sub-workflow 'CallGenome'
[2026-06-05T13:59:49.519994Z] [nf-e3503de90c5758a7974ce8ed69ec2a1d-db1bb-5m77g] [618_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_022_chrX_0007' to sub-workflow 'CallGenome'
[2026-06-05T13:59:49.520100Z] [nf-e3503de90c5758a7974ce8ed69ec2a1d-db1bb-5m77g] [618_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_022_chrX_0008' to sub-workflow 'CallGenome'
[2026-06-05T13:59:49.520165Z] [nf-e3503de90c5758a7974ce8ed69ec2a1d-db1bb-5m77g] [618_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_022_chrX_0008' to sub-workflow 'CallGenome'
[2026-06-05T13:59:49.520271Z] [nf-e3503de90c5758a7974ce8ed69ec2a1d-db1bb-5m77g] [618_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_022_chrX_0009' to sub-workflow 'CallGenome'
[2026-06-05T13:59:49.520389Z] [nf-e3503de90c5758a7974ce8ed69ec2a1d-db1bb-5m77g] [618_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_022_chrX_0009' to sub-workflow 'CallGenome'
[2026-06-05T13:59:49.520510Z] [nf-e3503de90c5758a7974ce8ed69ec2a1d-db1bb-5m77g] [618_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_022_chrX_0010' to sub-workflow 'CallGenome'
[2026-06-05T13:59:49.520578Z] [nf-e3503de90c5758a7974ce8ed69ec2a1d-db1bb-5m77g] [618_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_022_chrX_0010' to sub-workflow 'CallGenome'
[2026-06-05T13:59:49.520685Z] [nf-e3503de90c5758a7974ce8ed69ec2a1d-db1bb-5m77g] [618_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_022_chrX_0011' to sub-workflow 'CallGenome'
[2026-06-05T13:59:49.520752Z] [nf-e3503de90c5758a7974ce8ed69ec2a1d-db1bb-5m77g] [618_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_022_chrX_0011' to sub-workflow 'CallGenome'
[2026-06-05T13:59:49.520871Z] [nf-e3503de90c5758a7974ce8ed69ec2a1d-db1bb-5m77g] [618_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_022_chrX_0012' to sub-workflow 'CallGenome'
[2026-06-05T13:59:49.520985Z] [nf-e3503de90c5758a7974ce8ed69ec2a1d-db1bb-5m77g] [618_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_022_chrX_0012' to sub-workflow 'CallGenome'
[2026-06-05T13:59:49.521513Z] [nf-e3503de90c5758a7974ce8ed69ec2a1d-db1bb-5m77g] [618_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_022_chrX_0013' to sub-workflow 'CallGenome'
[2026-06-05T13:59:49.521580Z] [nf-e3503de90c5758a7974ce8ed69ec2a1d-db1bb-5m77g] [618_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_022_chrX_0013' to sub-workflow 'CallGenome'
[2026-06-05T13:59:49.521697Z] [nf-e3503de90c5758a7974ce8ed69ec2a1d-db1bb-5m77g] [618_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_023_chrY_0000' to sub-workflow 'CallGenome'
[2026-06-05T13:59:49.521762Z] [nf-e3503de90c5758a7974ce8ed69ec2a1d-db1bb-5m77g] [618_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_023_chrY_0000' to sub-workflow 'CallGenome'
[2026-06-05T13:59:49.521870Z] [nf-e3503de90c5758a7974ce8ed69ec2a1d-db1bb-5m77g] [618_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_023_chrY_0001' to sub-workflow 'CallGenome'
[2026-06-05T13:59:49.521934Z] [nf-e3503de90c5758a7974ce8ed69ec2a1d-db1bb-5m77g] [618_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_023_chrY_0001' to sub-workflow 'CallGenome'
[2026-06-05T13:59:49.522043Z] [nf-e3503de90c5758a7974ce8ed69ec2a1d-db1bb-5m77g] [618_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_023_chrY_0002' to sub-workflow 'CallGenome'
[2026-06-05T13:59:49.522105Z] [nf-e3503de90c5758a7974ce8ed69ec2a1d-db1bb-5m77g] [618_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_023_chrY_0002' to sub-workflow 'CallGenome'
[2026-06-05T13:59:49.522217Z] [nf-e3503de90c5758a7974ce8ed69ec2a1d-db1bb-5m77g] [618_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_023_chrY_0003' to sub-workflow 'CallGenome'
[2026-06-05T13:59:49.522281Z] [nf-e3503de90c5758a7974ce8ed69ec2a1d-db1bb-5m77g] [618_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_023_chrY_0003' to sub-workflow 'CallGenome'
[2026-06-05T13:59:49.537681Z] [nf-e3503de90c5758a7974ce8ed69ec2a1d-db1bb-5m77g] [618_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_023_chrY_0004' to sub-workflow 'CallGenome'
[2026-06-05T13:59:49.537911Z] [nf-e3503de90c5758a7974ce8ed69ec2a1d-db1bb-5m77g] [618_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_023_chrY_0004' to sub-workflow 'CallGenome'
[2026-06-05T13:59:49.537985Z] [nf-e3503de90c5758a7974ce8ed69ec2a1d-db1bb-5m77g] [618_1] [WorkflowRunner] Adding command task 'CallGenome+completedAllGenomeSegments' to sub-workflow 'CallGenome'
[2026-06-05T13:59:49.538147Z] [nf-e3503de90c5758a7974ce8ed69ec2a1d-db1bb-5m77g] [618_1] [WorkflowRunner] Adding command task 'CallGenome+SNV_concat_vcf' to sub-workflow 'CallGenome'
[2026-06-05T13:59:49.538220Z] [nf-e3503de90c5758a7974ce8ed69ec2a1d-db1bb-5m77g] [618_1] [WorkflowRunner] Adding command task 'CallGenome+SNV_index_vcf' to sub-workflow 'CallGenome'
[2026-06-05T13:59:49.538303Z] [nf-e3503de90c5758a7974ce8ed69ec2a1d-db1bb-5m77g] [618_1] [WorkflowRunner] Adding command task 'CallGenome+Indel_concat_vcf' to sub-workflow 'CallGenome'
[2026-06-05T13:59:49.538372Z] [nf-e3503de90c5758a7974ce8ed69ec2a1d-db1bb-5m77g] [618_1] [WorkflowRunner] Adding command task 'CallGenome+Indel_index_vcf' to sub-workflow 'CallGenome'
[2026-06-05T13:59:49.538483Z] [nf-e3503de90c5758a7974ce8ed69ec2a1d-db1bb-5m77g] [618_1] [WorkflowRunner] Adding command task 'CallGenome+mergeRunStats' to sub-workflow 'CallGenome'
[2026-06-05T13:59:49.538551Z] [nf-e3503de90c5758a7974ce8ed69ec2a1d-db1bb-5m77g] [618_1] [WorkflowRunner] Adding command task 'CallGenome+removeTmpDir' to sub-workflow 'CallGenome'
[2026-06-05T13:59:49.538599Z] [nf-e3503de90c5758a7974ce8ed69ec2a1d-db1bb-5m77g] [618_1] [TaskRunner:CallGenome] Finished task specification for sub-workflow
[2026-06-05T13:59:49.544091Z] [nf-e3503de90c5758a7974ce8ed69ec2a1d-db1bb-5m77g] [618_1] [TaskManager] Completed command task: 'CallGenome+makeTmpDir' launched from sub-workflow 'CallGenome'
[2026-06-05T13:59:49.544688Z] [nf-e3503de90c5758a7974ce8ed69ec2a1d-db1bb-5m77g] [618_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0002' from sub-workflow 'CallGenome'
[2026-06-05T13:59:49.545178Z] [nf-e3503de90c5758a7974ce8ed69ec2a1d-db1bb-5m77g] [618_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0012' from sub-workflow 'CallGenome'
[2026-06-05T13:59:49.545722Z] [nf-e3503de90c5758a7974ce8ed69ec2a1d-db1bb-5m77g] [618_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_023_chrY_0003' from sub-workflow 'CallGenome'
[2026-06-05T13:59:49.546446Z] [nf-e3503de90c5758a7974ce8ed69ec2a1d-db1bb-5m77g] [618_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_023_chrY_0001' from sub-workflow 'CallGenome'
[2026-06-05T13:59:49.549129Z] [nf-e3503de90c5758a7974ce8ed69ec2a1d-db1bb-5m77g] [618_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_022_chrX_0002] Task initiated on local node
[2026-06-05T13:59:49.551015Z] [nf-e3503de90c5758a7974ce8ed69ec2a1d-db1bb-5m77g] [618_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0001' from sub-workflow 'CallGenome'
[2026-06-05T13:59:49.551726Z] [nf-e3503de90c5758a7974ce8ed69ec2a1d-db1bb-5m77g] [618_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_023_chrY_0003] Task initiated on local node
[2026-06-05T13:59:49.556240Z] [nf-e3503de90c5758a7974ce8ed69ec2a1d-db1bb-5m77g] [618_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0013' from sub-workflow 'CallGenome'
[2026-06-05T13:59:49.557736Z] [nf-e3503de90c5758a7974ce8ed69ec2a1d-db1bb-5m77g] [618_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_022_chrX_0012] Task initiated on local node
[2026-06-05T13:59:49.558441Z] [nf-e3503de90c5758a7974ce8ed69ec2a1d-db1bb-5m77g] [618_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0011' from sub-workflow 'CallGenome'
[2026-06-05T13:59:49.558729Z] [nf-e3503de90c5758a7974ce8ed69ec2a1d-db1bb-5m77g] [618_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_008_chr9_0001] Task initiated on local node
[2026-06-05T13:59:49.559132Z] [nf-e3503de90c5758a7974ce8ed69ec2a1d-db1bb-5m77g] [618_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0004' from sub-workflow 'CallGenome'
[2026-06-05T13:59:49.566066Z] [nf-e3503de90c5758a7974ce8ed69ec2a1d-db1bb-5m77g] [618_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_022_chrX_0004] Task initiated on local node
[2026-06-05T13:59:49.568268Z] [nf-e3503de90c5758a7974ce8ed69ec2a1d-db1bb-5m77g] [618_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_008_chr9_0011] Task initiated on local node
[2026-06-05T13:59:49.569347Z] [nf-e3503de90c5758a7974ce8ed69ec2a1d-db1bb-5m77g] [618_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_022_chrX_0013] Task initiated on local node
[2026-06-05T13:59:49.678370Z] [nf-e3503de90c5758a7974ce8ed69ec2a1d-db1bb-5m77g] [618_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_023_chrY_0003' launched from sub-workflow 'CallGenome'
[2026-06-05T13:59:49.678498Z] [nf-e3503de90c5758a7974ce8ed69ec2a1d-db1bb-5m77g] [618_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0001' launched from sub-workflow 'CallGenome'
[2026-06-05T13:59:49.679344Z] [nf-e3503de90c5758a7974ce8ed69ec2a1d-db1bb-5m77g] [618_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0007' from sub-workflow 'CallGenome'
[2026-06-05T13:59:49.680173Z] [nf-e3503de90c5758a7974ce8ed69ec2a1d-db1bb-5m77g] [618_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0001' from sub-workflow 'CallGenome'
[2026-06-05T13:59:49.685751Z] [nf-e3503de90c5758a7974ce8ed69ec2a1d-db1bb-5m77g] [618_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_022_chrX_0001] Task initiated on local node
[2026-06-05T13:59:49.687300Z] [nf-e3503de90c5758a7974ce8ed69ec2a1d-db1bb-5m77g] [618_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_022_chrX_0007] Task initiated on local node
[2026-06-05T13:59:50.447334Z] [nf-e3503de90c5758a7974ce8ed69ec2a1d-db1bb-5m77g] [618_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0007' launched from sub-workflow 'CallGenome'
[2026-06-05T13:59:50.448243Z] [nf-e3503de90c5758a7974ce8ed69ec2a1d-db1bb-5m77g] [618_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0004' from sub-workflow 'CallGenome'
[2026-06-05T13:59:50.453261Z] [nf-e3503de90c5758a7974ce8ed69ec2a1d-db1bb-5m77g] [618_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_008_chr9_0004] Task initiated on local node
[2026-06-05T13:59:50.563418Z] [nf-e3503de90c5758a7974ce8ed69ec2a1d-db1bb-5m77g] [618_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0004' launched from sub-workflow 'CallGenome'
[2026-06-05T13:59:50.564192Z] [nf-e3503de90c5758a7974ce8ed69ec2a1d-db1bb-5m77g] [618_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0010' from sub-workflow 'CallGenome'
[2026-06-05T13:59:50.568725Z] [nf-e3503de90c5758a7974ce8ed69ec2a1d-db1bb-5m77g] [618_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_022_chrX_0010] Task initiated on local node
[2026-06-05T13:59:50.681867Z] [nf-e3503de90c5758a7974ce8ed69ec2a1d-db1bb-5m77g] [618_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_023_chrY_0001] Task initiated on local node
[2026-06-05T13:59:50.729847Z] [nf-e3503de90c5758a7974ce8ed69ec2a1d-db1bb-5m77g] [618_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0012' launched from sub-workflow 'CallGenome'
[2026-06-05T13:59:50.729937Z] [nf-e3503de90c5758a7974ce8ed69ec2a1d-db1bb-5m77g] [618_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_023_chrY_0001' launched from sub-workflow 'CallGenome'
[2026-06-05T13:59:50.730727Z] [nf-e3503de90c5758a7974ce8ed69ec2a1d-db1bb-5m77g] [618_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_023_chrY_0001' from sub-workflow 'CallGenome'
[2026-06-05T13:59:50.731214Z] [nf-e3503de90c5758a7974ce8ed69ec2a1d-db1bb-5m77g] [618_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_023_chrY_0000' from sub-workflow 'CallGenome'
[2026-06-05T13:59:50.734962Z] [nf-e3503de90c5758a7974ce8ed69ec2a1d-db1bb-5m77g] [618_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_023_chrY_0001] Task initiated on local node
[2026-06-05T13:59:50.736042Z] [nf-e3503de90c5758a7974ce8ed69ec2a1d-db1bb-5m77g] [618_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_023_chrY_0000] Task initiated on local node
[2026-06-05T13:59:50.749140Z] [nf-e3503de90c5758a7974ce8ed69ec2a1d-db1bb-5m77g] [618_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0002' launched from sub-workflow 'CallGenome'
[2026-06-05T13:59:50.749920Z] [nf-e3503de90c5758a7974ce8ed69ec2a1d-db1bb-5m77g] [618_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0000' from sub-workflow 'CallGenome'
[2026-06-05T13:59:50.753421Z] [nf-e3503de90c5758a7974ce8ed69ec2a1d-db1bb-5m77g] [618_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_022_chrX_0000] Task initiated on local node
[2026-06-05T13:59:50.782622Z] [nf-e3503de90c5758a7974ce8ed69ec2a1d-db1bb-5m77g] [618_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_023_chrY_0001' launched from sub-workflow 'CallGenome'
[2026-06-05T13:59:50.783411Z] [nf-e3503de90c5758a7974ce8ed69ec2a1d-db1bb-5m77g] [618_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0009' from sub-workflow 'CallGenome'
[2026-06-05T13:59:50.786649Z] [nf-e3503de90c5758a7974ce8ed69ec2a1d-db1bb-5m77g] [618_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_022_chrX_0009] Task initiated on local node
[2026-06-05T13:59:51.249446Z] [nf-e3503de90c5758a7974ce8ed69ec2a1d-db1bb-5m77g] [618_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_023_chrY_0000' launched from sub-workflow 'CallGenome'
[2026-06-05T13:59:51.250259Z] [nf-e3503de90c5758a7974ce8ed69ec2a1d-db1bb-5m77g] [618_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_023_chrY_0004' from sub-workflow 'CallGenome'
[2026-06-05T13:59:51.255130Z] [nf-e3503de90c5758a7974ce8ed69ec2a1d-db1bb-5m77g] [618_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_023_chrY_0004] Task initiated on local node
[2026-06-05T13:59:51.416330Z] [nf-e3503de90c5758a7974ce8ed69ec2a1d-db1bb-5m77g] [618_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_023_chrY_0004' launched from sub-workflow 'CallGenome'
[2026-06-05T13:59:51.417231Z] [nf-e3503de90c5758a7974ce8ed69ec2a1d-db1bb-5m77g] [618_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0006' from sub-workflow 'CallGenome'
[2026-06-05T13:59:51.420074Z] [nf-e3503de90c5758a7974ce8ed69ec2a1d-db1bb-5m77g] [618_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0013' launched from sub-workflow 'CallGenome'
[2026-06-05T13:59:51.420905Z] [nf-e3503de90c5758a7974ce8ed69ec2a1d-db1bb-5m77g] [618_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0001' from sub-workflow 'CallGenome'
[2026-06-05T13:59:51.421321Z] [nf-e3503de90c5758a7974ce8ed69ec2a1d-db1bb-5m77g] [618_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_008_chr9_0006] Task initiated on local node
[2026-06-05T13:59:51.424161Z] [nf-e3503de90c5758a7974ce8ed69ec2a1d-db1bb-5m77g] [618_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_008_chr9_0001] Task initiated on local node
[2026-06-05T13:59:51.485895Z] [nf-e3503de90c5758a7974ce8ed69ec2a1d-db1bb-5m77g] [618_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0001' launched from sub-workflow 'CallGenome'
[2026-06-05T13:59:51.486011Z] [nf-e3503de90c5758a7974ce8ed69ec2a1d-db1bb-5m77g] [618_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0006' launched from sub-workflow 'CallGenome'
[2026-06-05T13:59:51.486736Z] [nf-e3503de90c5758a7974ce8ed69ec2a1d-db1bb-5m77g] [618_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_023_chrY_0000' from sub-workflow 'CallGenome'
[2026-06-05T13:59:51.487508Z] [nf-e3503de90c5758a7974ce8ed69ec2a1d-db1bb-5m77g] [618_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0002' from sub-workflow 'CallGenome'
[2026-06-05T13:59:51.491967Z] [nf-e3503de90c5758a7974ce8ed69ec2a1d-db1bb-5m77g] [618_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_022_chrX_0002] Task initiated on local node
[2026-06-05T13:59:51.493594Z] [nf-e3503de90c5758a7974ce8ed69ec2a1d-db1bb-5m77g] [618_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_023_chrY_0000] Task initiated on local node
[2026-06-05T13:59:51.552203Z] [nf-e3503de90c5758a7974ce8ed69ec2a1d-db1bb-5m77g] [618_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_023_chrY_0000' launched from sub-workflow 'CallGenome'
[2026-06-05T13:59:51.552301Z] [nf-e3503de90c5758a7974ce8ed69ec2a1d-db1bb-5m77g] [618_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0002' launched from sub-workflow 'CallGenome'
[2026-06-05T13:59:51.553058Z] [nf-e3503de90c5758a7974ce8ed69ec2a1d-db1bb-5m77g] [618_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0006' from sub-workflow 'CallGenome'
[2026-06-05T13:59:51.553852Z] [nf-e3503de90c5758a7974ce8ed69ec2a1d-db1bb-5m77g] [618_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0009' from sub-workflow 'CallGenome'
[2026-06-05T13:59:51.557554Z] [nf-e3503de90c5758a7974ce8ed69ec2a1d-db1bb-5m77g] [618_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_008_chr9_0006] Task initiated on local node
[2026-06-05T13:59:51.560860Z] [nf-e3503de90c5758a7974ce8ed69ec2a1d-db1bb-5m77g] [618_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_008_chr9_0009] Task initiated on local node
[2026-06-05T13:59:51.589863Z] [nf-e3503de90c5758a7974ce8ed69ec2a1d-db1bb-5m77g] [618_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0004' launched from sub-workflow 'CallGenome'
[2026-06-05T13:59:51.590673Z] [nf-e3503de90c5758a7974ce8ed69ec2a1d-db1bb-5m77g] [618_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0004' from sub-workflow 'CallGenome'
[2026-06-05T13:59:51.594819Z] [nf-e3503de90c5758a7974ce8ed69ec2a1d-db1bb-5m77g] [618_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_022_chrX_0004] Task initiated on local node
[2026-06-05T13:59:51.598814Z] [nf-e3503de90c5758a7974ce8ed69ec2a1d-db1bb-5m77g] [618_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0006' launched from sub-workflow 'CallGenome'
[2026-06-05T13:59:51.599527Z] [nf-e3503de90c5758a7974ce8ed69ec2a1d-db1bb-5m77g] [618_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0004' from sub-workflow 'CallGenome'
[2026-06-05T13:59:51.603432Z] [nf-e3503de90c5758a7974ce8ed69ec2a1d-db1bb-5m77g] [618_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_008_chr9_0004] Task initiated on local node
[2026-06-05T13:59:51.632319Z] [nf-e3503de90c5758a7974ce8ed69ec2a1d-db1bb-5m77g] [618_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0004' launched from sub-workflow 'CallGenome'
[2026-06-05T13:59:51.633045Z] [nf-e3503de90c5758a7974ce8ed69ec2a1d-db1bb-5m77g] [618_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0003' from sub-workflow 'CallGenome'
[2026-06-05T13:59:51.637048Z] [nf-e3503de90c5758a7974ce8ed69ec2a1d-db1bb-5m77g] [618_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_008_chr9_0003] Task initiated on local node
[2026-06-05T13:59:51.641379Z] [nf-e3503de90c5758a7974ce8ed69ec2a1d-db1bb-5m77g] [618_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0004' launched from sub-workflow 'CallGenome'
[2026-06-05T13:59:51.642076Z] [nf-e3503de90c5758a7974ce8ed69ec2a1d-db1bb-5m77g] [618_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_023_chrY_0004' from sub-workflow 'CallGenome'
[2026-06-05T13:59:51.645197Z] [nf-e3503de90c5758a7974ce8ed69ec2a1d-db1bb-5m77g] [618_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_023_chrY_0004] Task initiated on local node
[2026-06-05T13:59:51.706586Z] [nf-e3503de90c5758a7974ce8ed69ec2a1d-db1bb-5m77g] [618_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_023_chrY_0004' launched from sub-workflow 'CallGenome'
[2026-06-05T13:59:51.706693Z] [nf-e3503de90c5758a7974ce8ed69ec2a1d-db1bb-5m77g] [618_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0003' launched from sub-workflow 'CallGenome'
[2026-06-05T13:59:51.706729Z] [nf-e3503de90c5758a7974ce8ed69ec2a1d-db1bb-5m77g] [618_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0010' launched from sub-workflow 'CallGenome'
[2026-06-05T13:59:51.707402Z] [nf-e3503de90c5758a7974ce8ed69ec2a1d-db1bb-5m77g] [618_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_023_chrY_0003' from sub-workflow 'CallGenome'
[2026-06-05T13:59:51.708030Z] [nf-e3503de90c5758a7974ce8ed69ec2a1d-db1bb-5m77g] [618_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0003' from sub-workflow 'CallGenome'
[2026-06-05T13:59:51.710319Z] [nf-e3503de90c5758a7974ce8ed69ec2a1d-db1bb-5m77g] [618_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0010' from sub-workflow 'CallGenome'
[2026-06-05T13:59:51.713842Z] [nf-e3503de90c5758a7974ce8ed69ec2a1d-db1bb-5m77g] [618_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_023_chrY_0003] Task initiated on local node
[2026-06-05T13:59:51.714132Z] [nf-e3503de90c5758a7974ce8ed69ec2a1d-db1bb-5m77g] [618_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_008_chr9_0003] Task initiated on local node
[2026-06-05T13:59:51.715279Z] [nf-e3503de90c5758a7974ce8ed69ec2a1d-db1bb-5m77g] [618_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_022_chrX_0010] Task initiated on local node
[2026-06-05T13:59:51.778109Z] [nf-e3503de90c5758a7974ce8ed69ec2a1d-db1bb-5m77g] [618_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0003' launched from sub-workflow 'CallGenome'
[2026-06-05T13:59:51.778209Z] [nf-e3503de90c5758a7974ce8ed69ec2a1d-db1bb-5m77g] [618_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_023_chrY_0003' launched from sub-workflow 'CallGenome'
[2026-06-05T13:59:51.778240Z] [nf-e3503de90c5758a7974ce8ed69ec2a1d-db1bb-5m77g] [618_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0010' launched from sub-workflow 'CallGenome'
[2026-06-05T13:59:51.778908Z] [nf-e3503de90c5758a7974ce8ed69ec2a1d-db1bb-5m77g] [618_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0000' from sub-workflow 'CallGenome'
[2026-06-05T13:59:51.779636Z] [nf-e3503de90c5758a7974ce8ed69ec2a1d-db1bb-5m77g] [618_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0008' from sub-workflow 'CallGenome'
[2026-06-05T13:59:51.780533Z] [nf-e3503de90c5758a7974ce8ed69ec2a1d-db1bb-5m77g] [618_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0007' from sub-workflow 'CallGenome'
[2026-06-05T13:59:51.781001Z] [nf-e3503de90c5758a7974ce8ed69ec2a1d-db1bb-5m77g] [618_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0001' launched from sub-workflow 'CallGenome'
[2026-06-05T13:59:51.783654Z] [nf-e3503de90c5758a7974ce8ed69ec2a1d-db1bb-5m77g] [618_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0013' from sub-workflow 'CallGenome'
[2026-06-05T13:59:51.790124Z] [nf-e3503de90c5758a7974ce8ed69ec2a1d-db1bb-5m77g] [618_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_022_chrX_0008] Task initiated on local node
[2026-06-05T13:59:51.790469Z] [nf-e3503de90c5758a7974ce8ed69ec2a1d-db1bb-5m77g] [618_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_022_chrX_0013] Task initiated on local node
[2026-06-05T13:59:51.791802Z] [nf-e3503de90c5758a7974ce8ed69ec2a1d-db1bb-5m77g] [618_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_008_chr9_0007] Task initiated on local node
[2026-06-05T13:59:51.824052Z] [nf-e3503de90c5758a7974ce8ed69ec2a1d-db1bb-5m77g] [618_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_008_chr9_0000] Task initiated on local node
[2026-06-05T13:59:51.851437Z] [nf-e3503de90c5758a7974ce8ed69ec2a1d-db1bb-5m77g] [618_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0013' launched from sub-workflow 'CallGenome'
[2026-06-05T13:59:51.851526Z] [nf-e3503de90c5758a7974ce8ed69ec2a1d-db1bb-5m77g] [618_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0007' launched from sub-workflow 'CallGenome'
[2026-06-05T13:59:51.852645Z] [nf-e3503de90c5758a7974ce8ed69ec2a1d-db1bb-5m77g] [618_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0007' from sub-workflow 'CallGenome'
[2026-06-05T13:59:51.853404Z] [nf-e3503de90c5758a7974ce8ed69ec2a1d-db1bb-5m77g] [618_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0010' from sub-workflow 'CallGenome'
[2026-06-05T13:59:51.855596Z] [nf-e3503de90c5758a7974ce8ed69ec2a1d-db1bb-5m77g] [618_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0000' launched from sub-workflow 'CallGenome'
[2026-06-05T13:59:51.856839Z] [nf-e3503de90c5758a7974ce8ed69ec2a1d-db1bb-5m77g] [618_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_008_chr9_0007] Task initiated on local node
[2026-06-05T13:59:51.857403Z] [nf-e3503de90c5758a7974ce8ed69ec2a1d-db1bb-5m77g] [618_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0007' from sub-workflow 'CallGenome'
[2026-06-05T13:59:51.860985Z] [nf-e3503de90c5758a7974ce8ed69ec2a1d-db1bb-5m77g] [618_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_008_chr9_0010] Task initiated on local node
[2026-06-05T13:59:51.862454Z] [nf-e3503de90c5758a7974ce8ed69ec2a1d-db1bb-5m77g] [618_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_022_chrX_0007] Task initiated on local node
[2026-06-05T13:59:51.922664Z] [nf-e3503de90c5758a7974ce8ed69ec2a1d-db1bb-5m77g] [618_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0007' launched from sub-workflow 'CallGenome'
[2026-06-05T13:59:51.922762Z] [nf-e3503de90c5758a7974ce8ed69ec2a1d-db1bb-5m77g] [618_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0007' launched from sub-workflow 'CallGenome'
[2026-06-05T13:59:51.923398Z] [nf-e3503de90c5758a7974ce8ed69ec2a1d-db1bb-5m77g] [618_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0005' from sub-workflow 'CallGenome'
[2026-06-05T13:59:51.923774Z] [nf-e3503de90c5758a7974ce8ed69ec2a1d-db1bb-5m77g] [618_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0003' from sub-workflow 'CallGenome'
[2026-06-05T13:59:51.927915Z] [nf-e3503de90c5758a7974ce8ed69ec2a1d-db1bb-5m77g] [618_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_022_chrX_0003] Task initiated on local node
[2026-06-05T13:59:51.928730Z] [nf-e3503de90c5758a7974ce8ed69ec2a1d-db1bb-5m77g] [618_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0000' launched from sub-workflow 'CallGenome'
[2026-06-05T13:59:51.929432Z] [nf-e3503de90c5758a7974ce8ed69ec2a1d-db1bb-5m77g] [618_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0005' from sub-workflow 'CallGenome'
[2026-06-05T13:59:51.930205Z] [nf-e3503de90c5758a7974ce8ed69ec2a1d-db1bb-5m77g] [618_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_022_chrX_0005] Task initiated on local node
[2026-06-05T13:59:51.934004Z] [nf-e3503de90c5758a7974ce8ed69ec2a1d-db1bb-5m77g] [618_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_008_chr9_0005] Task initiated on local node
[2026-06-05T13:59:51.994932Z] [nf-e3503de90c5758a7974ce8ed69ec2a1d-db1bb-5m77g] [618_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0005' launched from sub-workflow 'CallGenome'
[2026-06-05T13:59:51.995630Z] [nf-e3503de90c5758a7974ce8ed69ec2a1d-db1bb-5m77g] [618_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0006' from sub-workflow 'CallGenome'
[2026-06-05T13:59:51.999685Z] [nf-e3503de90c5758a7974ce8ed69ec2a1d-db1bb-5m77g] [618_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_022_chrX_0006] Task initiated on local node
[2026-06-05T13:59:52.161674Z] [nf-e3503de90c5758a7974ce8ed69ec2a1d-db1bb-5m77g] [618_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0008' launched from sub-workflow 'CallGenome'
[2026-06-05T13:59:52.162356Z] [nf-e3503de90c5758a7974ce8ed69ec2a1d-db1bb-5m77g] [618_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0012' from sub-workflow 'CallGenome'
[2026-06-05T13:59:52.166282Z] [nf-e3503de90c5758a7974ce8ed69ec2a1d-db1bb-5m77g] [618_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_022_chrX_0012] Task initiated on local node
[2026-06-05T13:59:52.227495Z] [nf-e3503de90c5758a7974ce8ed69ec2a1d-db1bb-5m77g] [618_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0012' launched from sub-workflow 'CallGenome'
[2026-06-05T13:59:52.228169Z] [nf-e3503de90c5758a7974ce8ed69ec2a1d-db1bb-5m77g] [618_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0008' from sub-workflow 'CallGenome'
[2026-06-05T13:59:52.231820Z] [nf-e3503de90c5758a7974ce8ed69ec2a1d-db1bb-5m77g] [618_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_022_chrX_0008] Task initiated on local node
[2026-06-05T13:59:52.292997Z] [nf-e3503de90c5758a7974ce8ed69ec2a1d-db1bb-5m77g] [618_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0008' launched from sub-workflow 'CallGenome'
[2026-06-05T13:59:52.293608Z] [nf-e3503de90c5758a7974ce8ed69ec2a1d-db1bb-5m77g] [618_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0000' from sub-workflow 'CallGenome'
[2026-06-05T13:59:52.297148Z] [nf-e3503de90c5758a7974ce8ed69ec2a1d-db1bb-5m77g] [618_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_022_chrX_0000] Task initiated on local node
[2026-06-05T13:59:52.358415Z] [nf-e3503de90c5758a7974ce8ed69ec2a1d-db1bb-5m77g] [618_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0000' launched from sub-workflow 'CallGenome'
[2026-06-05T13:59:52.359085Z] [nf-e3503de90c5758a7974ce8ed69ec2a1d-db1bb-5m77g] [618_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0005' from sub-workflow 'CallGenome'
[2026-06-05T13:59:52.362679Z] [nf-e3503de90c5758a7974ce8ed69ec2a1d-db1bb-5m77g] [618_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_008_chr9_0005] Task initiated on local node
[2026-06-05T13:59:52.423838Z] [nf-e3503de90c5758a7974ce8ed69ec2a1d-db1bb-5m77g] [618_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0005' launched from sub-workflow 'CallGenome'
[2026-06-05T13:59:52.424498Z] [nf-e3503de90c5758a7974ce8ed69ec2a1d-db1bb-5m77g] [618_1] [TaskManager] Launching command task: 'CallGenome+fixVcfHeader_chromId_008_chr9_0000' from sub-workflow 'CallGenome'
[2026-06-05T13:59:52.428366Z] [nf-e3503de90c5758a7974ce8ed69ec2a1d-db1bb-5m77g] [618_1] [TaskRunner:CallGenome+fixVcfHeader_chromId_008_chr9_0000] Task initiated on local node
[2026-06-05T13:59:52.489431Z] [nf-e3503de90c5758a7974ce8ed69ec2a1d-db1bb-5m77g] [618_1] [TaskManager] Completed command task: 'CallGenome+fixVcfHeader_chromId_008_chr9_0000' launched from sub-workflow 'CallGenome'
[2026-06-05T13:59:52.490078Z] [nf-e3503de90c5758a7974ce8ed69ec2a1d-db1bb-5m77g] [618_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0000' from sub-workflow 'CallGenome'
[2026-06-05T13:59:52.493739Z] [nf-e3503de90c5758a7974ce8ed69ec2a1d-db1bb-5m77g] [618_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_008_chr9_0000] Task initiated on local node
[2026-06-05T13:59:52.506820Z] [nf-e3503de90c5758a7974ce8ed69ec2a1d-db1bb-5m77g] [618_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0005' launched from sub-workflow 'CallGenome'
[2026-06-05T13:59:52.507500Z] [nf-e3503de90c5758a7974ce8ed69ec2a1d-db1bb-5m77g] [618_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0005' from sub-workflow 'CallGenome'
[2026-06-05T13:59:52.511392Z] [nf-e3503de90c5758a7974ce8ed69ec2a1d-db1bb-5m77g] [618_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_022_chrX_0005] Task initiated on local node
[2026-06-05T13:59:52.540386Z] [nf-e3503de90c5758a7974ce8ed69ec2a1d-db1bb-5m77g] [618_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0000' launched from sub-workflow 'CallGenome'
[2026-06-05T13:59:52.540995Z] [nf-e3503de90c5758a7974ce8ed69ec2a1d-db1bb-5m77g] [618_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0002' from sub-workflow 'CallGenome'
[2026-06-05T13:59:52.545327Z] [nf-e3503de90c5758a7974ce8ed69ec2a1d-db1bb-5m77g] [618_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_008_chr9_0002] Task initiated on local node
[2026-06-05T13:59:52.545992Z] [nf-e3503de90c5758a7974ce8ed69ec2a1d-db1bb-5m77g] [618_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0005' launched from sub-workflow 'CallGenome'
[2026-06-05T13:59:52.546594Z] [nf-e3503de90c5758a7974ce8ed69ec2a1d-db1bb-5m77g] [618_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0001' from sub-workflow 'CallGenome'
[2026-06-05T13:59:52.549993Z] [nf-e3503de90c5758a7974ce8ed69ec2a1d-db1bb-5m77g] [618_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_022_chrX_0001] Task initiated on local node
[2026-06-05T13:59:52.611451Z] [nf-e3503de90c5758a7974ce8ed69ec2a1d-db1bb-5m77g] [618_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0001' launched from sub-workflow 'CallGenome'
[2026-06-05T13:59:52.611545Z] [nf-e3503de90c5758a7974ce8ed69ec2a1d-db1bb-5m77g] [618_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0002' launched from sub-workflow 'CallGenome'
[2026-06-05T13:59:52.612099Z] [nf-e3503de90c5758a7974ce8ed69ec2a1d-db1bb-5m77g] [618_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0008' from sub-workflow 'CallGenome'
[2026-06-05T13:59:52.612450Z] [nf-e3503de90c5758a7974ce8ed69ec2a1d-db1bb-5m77g] [618_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0011' from sub-workflow 'CallGenome'
[2026-06-05T13:59:52.617396Z] [nf-e3503de90c5758a7974ce8ed69ec2a1d-db1bb-5m77g] [618_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_008_chr9_0008] Task initiated on local node
[2026-06-05T13:59:52.618827Z] [nf-e3503de90c5758a7974ce8ed69ec2a1d-db1bb-5m77g] [618_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_022_chrX_0011] Task initiated on local node
[2026-06-05T13:59:52.728685Z] [nf-e3503de90c5758a7974ce8ed69ec2a1d-db1bb-5m77g] [618_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0008' launched from sub-workflow 'CallGenome'
[2026-06-05T13:59:52.729270Z] [nf-e3503de90c5758a7974ce8ed69ec2a1d-db1bb-5m77g] [618_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0008' from sub-workflow 'CallGenome'
[2026-06-05T13:59:52.733128Z] [nf-e3503de90c5758a7974ce8ed69ec2a1d-db1bb-5m77g] [618_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_008_chr9_0008] Task initiated on local node
[2026-06-05T13:59:52.794584Z] [nf-e3503de90c5758a7974ce8ed69ec2a1d-db1bb-5m77g] [618_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0008' launched from sub-workflow 'CallGenome'
[2026-06-05T13:59:52.795206Z] [nf-e3503de90c5758a7974ce8ed69ec2a1d-db1bb-5m77g] [618_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0002' from sub-workflow 'CallGenome'
[2026-06-05T13:59:52.799212Z] [nf-e3503de90c5758a7974ce8ed69ec2a1d-db1bb-5m77g] [618_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_008_chr9_0002] Task initiated on local node
[2026-06-05T13:59:52.812105Z] [nf-e3503de90c5758a7974ce8ed69ec2a1d-db1bb-5m77g] [618_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0009' launched from sub-workflow 'CallGenome'
[2026-06-05T13:59:52.812690Z] [nf-e3503de90c5758a7974ce8ed69ec2a1d-db1bb-5m77g] [618_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0009' from sub-workflow 'CallGenome'
[2026-06-05T13:59:52.816208Z] [nf-e3503de90c5758a7974ce8ed69ec2a1d-db1bb-5m77g] [618_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_022_chrX_0009] Task initiated on local node
[2026-06-05T13:59:52.829121Z] [nf-e3503de90c5758a7974ce8ed69ec2a1d-db1bb-5m77g] [618_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0009' launched from sub-workflow 'CallGenome'
[2026-06-05T13:59:52.829603Z] [nf-e3503de90c5758a7974ce8ed69ec2a1d-db1bb-5m77g] [618_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0009' from sub-workflow 'CallGenome'
[2026-06-05T13:59:52.833453Z] [nf-e3503de90c5758a7974ce8ed69ec2a1d-db1bb-5m77g] [618_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_008_chr9_0009] Task initiated on local node
[2026-06-05T13:59:52.834158Z] [nf-e3503de90c5758a7974ce8ed69ec2a1d-db1bb-5m77g] [618_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0002' launched from sub-workflow 'CallGenome'
[2026-06-05T13:59:52.834748Z] [nf-e3503de90c5758a7974ce8ed69ec2a1d-db1bb-5m77g] [618_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_023_chrY_0002' from sub-workflow 'CallGenome'
[2026-06-05T13:59:52.839108Z] [nf-e3503de90c5758a7974ce8ed69ec2a1d-db1bb-5m77g] [618_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_023_chrY_0002] Task initiated on local node
[2026-06-05T13:59:52.851584Z] [nf-e3503de90c5758a7974ce8ed69ec2a1d-db1bb-5m77g] [618_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0009' launched from sub-workflow 'CallGenome'
[2026-06-05T13:59:52.883788Z] [nf-e3503de90c5758a7974ce8ed69ec2a1d-db1bb-5m77g] [618_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0009' launched from sub-workflow 'CallGenome'
[2026-06-05T13:59:52.916065Z] [nf-e3503de90c5758a7974ce8ed69ec2a1d-db1bb-5m77g] [618_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0011' launched from sub-workflow 'CallGenome'
[2026-06-05T13:59:52.916682Z] [nf-e3503de90c5758a7974ce8ed69ec2a1d-db1bb-5m77g] [618_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0011' from sub-workflow 'CallGenome'
[2026-06-05T13:59:52.920968Z] [nf-e3503de90c5758a7974ce8ed69ec2a1d-db1bb-5m77g] [618_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_008_chr9_0011] Task initiated on local node
[2026-06-05T13:59:52.981767Z] [nf-e3503de90c5758a7974ce8ed69ec2a1d-db1bb-5m77g] [618_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0011' launched from sub-workflow 'CallGenome'
[2026-06-05T13:59:53.146550Z] [nf-e3503de90c5758a7974ce8ed69ec2a1d-db1bb-5m77g] [618_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_023_chrY_0002' launched from sub-workflow 'CallGenome'
[2026-06-05T13:59:53.147041Z] [nf-e3503de90c5758a7974ce8ed69ec2a1d-db1bb-5m77g] [618_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_023_chrY_0002' from sub-workflow 'CallGenome'
[2026-06-05T13:59:53.150903Z] [nf-e3503de90c5758a7974ce8ed69ec2a1d-db1bb-5m77g] [618_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_023_chrY_0002] Task initiated on local node
[2026-06-05T13:59:53.212120Z] [nf-e3503de90c5758a7974ce8ed69ec2a1d-db1bb-5m77g] [618_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_023_chrY_0002' launched from sub-workflow 'CallGenome'
[2026-06-05T13:59:53.277129Z] [nf-e3503de90c5758a7974ce8ed69ec2a1d-db1bb-5m77g] [618_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0003' launched from sub-workflow 'CallGenome'
[2026-06-05T13:59:53.277785Z] [nf-e3503de90c5758a7974ce8ed69ec2a1d-db1bb-5m77g] [618_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0003' from sub-workflow 'CallGenome'
[2026-06-05T13:59:53.281353Z] [nf-e3503de90c5758a7974ce8ed69ec2a1d-db1bb-5m77g] [618_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_022_chrX_0003] Task initiated on local node
[2026-06-05T13:59:53.342710Z] [nf-e3503de90c5758a7974ce8ed69ec2a1d-db1bb-5m77g] [618_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0003' launched from sub-workflow 'CallGenome'
[2026-06-05T13:59:53.908676Z] [nf-e3503de90c5758a7974ce8ed69ec2a1d-db1bb-5m77g] [618_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0006' launched from sub-workflow 'CallGenome'
[2026-06-05T13:59:53.908781Z] [nf-e3503de90c5758a7974ce8ed69ec2a1d-db1bb-5m77g] [618_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0011' launched from sub-workflow 'CallGenome'
[2026-06-05T13:59:53.909237Z] [nf-e3503de90c5758a7974ce8ed69ec2a1d-db1bb-5m77g] [618_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0006' from sub-workflow 'CallGenome'
[2026-06-05T13:59:53.909995Z] [nf-e3503de90c5758a7974ce8ed69ec2a1d-db1bb-5m77g] [618_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0011' from sub-workflow 'CallGenome'
[2026-06-05T13:59:53.913494Z] [nf-e3503de90c5758a7974ce8ed69ec2a1d-db1bb-5m77g] [618_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_022_chrX_0006] Task initiated on local node
[2026-06-05T13:59:53.914637Z] [nf-e3503de90c5758a7974ce8ed69ec2a1d-db1bb-5m77g] [618_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_022_chrX_0011] Task initiated on local node
[2026-06-05T13:59:53.974864Z] [nf-e3503de90c5758a7974ce8ed69ec2a1d-db1bb-5m77g] [618_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0006' launched from sub-workflow 'CallGenome'
[2026-06-05T13:59:53.974986Z] [nf-e3503de90c5758a7974ce8ed69ec2a1d-db1bb-5m77g] [618_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0011' launched from sub-workflow 'CallGenome'
[2026-06-05T13:59:53.991005Z] [nf-e3503de90c5758a7974ce8ed69ec2a1d-db1bb-5m77g] [618_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0010' launched from sub-workflow 'CallGenome'
[2026-06-05T13:59:53.991687Z] [nf-e3503de90c5758a7974ce8ed69ec2a1d-db1bb-5m77g] [618_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0010' from sub-workflow 'CallGenome'
[2026-06-05T13:59:53.995248Z] [nf-e3503de90c5758a7974ce8ed69ec2a1d-db1bb-5m77g] [618_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_008_chr9_0010] Task initiated on local node
[2026-06-05T13:59:54.056772Z] [nf-e3503de90c5758a7974ce8ed69ec2a1d-db1bb-5m77g] [618_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0010' launched from sub-workflow 'CallGenome'
[2026-06-05T13:59:54.057168Z] [nf-e3503de90c5758a7974ce8ed69ec2a1d-db1bb-5m77g] [618_1] [TaskManager] Completed command task: 'CallGenome+completedAllGenomeSegments' launched from sub-workflow 'CallGenome'
[2026-06-05T13:59:54.057398Z] [nf-e3503de90c5758a7974ce8ed69ec2a1d-db1bb-5m77g] [618_1] [TaskManager] Launching command task: 'CallGenome+mergeRunStats' from sub-workflow 'CallGenome'
[2026-06-05T13:59:54.058377Z] [nf-e3503de90c5758a7974ce8ed69ec2a1d-db1bb-5m77g] [618_1] [TaskManager] Launching command task: 'CallGenome+Indel_concat_vcf' from sub-workflow 'CallGenome'
[2026-06-05T13:59:54.058816Z] [nf-e3503de90c5758a7974ce8ed69ec2a1d-db1bb-5m77g] [618_1] [TaskManager] Launching command task: 'CallGenome+SNV_concat_vcf' from sub-workflow 'CallGenome'
[2026-06-05T13:59:54.062671Z] [nf-e3503de90c5758a7974ce8ed69ec2a1d-db1bb-5m77g] [618_1] [TaskRunner:CallGenome+mergeRunStats] Task initiated on local node
[2026-06-05T13:59:54.063717Z] [nf-e3503de90c5758a7974ce8ed69ec2a1d-db1bb-5m77g] [618_1] [TaskRunner:CallGenome+Indel_concat_vcf] Task initiated on local node
[2026-06-05T13:59:54.066270Z] [nf-e3503de90c5758a7974ce8ed69ec2a1d-db1bb-5m77g] [618_1] [TaskRunner:CallGenome+SNV_concat_vcf] Task initiated on local node
[2026-06-05T13:59:54.095686Z] [nf-e3503de90c5758a7974ce8ed69ec2a1d-db1bb-5m77g] [618_1] [TaskManager] Completed command task: 'CallGenome+mergeRunStats' launched from sub-workflow 'CallGenome'
[2026-06-05T13:59:54.095802Z] [nf-e3503de90c5758a7974ce8ed69ec2a1d-db1bb-5m77g] [618_1] [TaskManager] Completed command task: 'CallGenome+Indel_concat_vcf' launched from sub-workflow 'CallGenome'
[2026-06-05T13:59:54.096109Z] [nf-e3503de90c5758a7974ce8ed69ec2a1d-db1bb-5m77g] [618_1] [TaskManager] Launching command task: 'CallGenome+Indel_index_vcf' from sub-workflow 'CallGenome'
[2026-06-05T13:59:54.096832Z] [nf-e3503de90c5758a7974ce8ed69ec2a1d-db1bb-5m77g] [618_1] [TaskManager] Completed command task: 'CallGenome+SNV_concat_vcf' launched from sub-workflow 'CallGenome'
[2026-06-05T13:59:54.097196Z] [nf-e3503de90c5758a7974ce8ed69ec2a1d-db1bb-5m77g] [618_1] [TaskManager] Launching command task: 'CallGenome+SNV_index_vcf' from sub-workflow 'CallGenome'
[2026-06-05T13:59:54.100930Z] [nf-e3503de90c5758a7974ce8ed69ec2a1d-db1bb-5m77g] [618_1] [TaskRunner:CallGenome+Indel_index_vcf] Task initiated on local node
[2026-06-05T13:59:54.102177Z] [nf-e3503de90c5758a7974ce8ed69ec2a1d-db1bb-5m77g] [618_1] [TaskRunner:CallGenome+SNV_index_vcf] Task initiated on local node
[2026-06-05T13:59:54.163720Z] [nf-e3503de90c5758a7974ce8ed69ec2a1d-db1bb-5m77g] [618_1] [TaskManager] Completed command task: 'CallGenome+SNV_index_vcf' launched from sub-workflow 'CallGenome'
[2026-06-05T13:59:54.163831Z] [nf-e3503de90c5758a7974ce8ed69ec2a1d-db1bb-5m77g] [618_1] [TaskManager] Completed command task: 'CallGenome+Indel_index_vcf' launched from sub-workflow 'CallGenome'
[2026-06-05T13:59:54.164143Z] [nf-e3503de90c5758a7974ce8ed69ec2a1d-db1bb-5m77g] [618_1] [TaskManager] Launching command task: 'CallGenome+removeTmpDir' from sub-workflow 'CallGenome'
[2026-06-05T13:59:54.168318Z] [nf-e3503de90c5758a7974ce8ed69ec2a1d-db1bb-5m77g] [618_1] [TaskRunner:CallGenome+removeTmpDir] Task initiated on local node
[2026-06-05T13:59:54.228958Z] [nf-e3503de90c5758a7974ce8ed69ec2a1d-db1bb-5m77g] [618_1] [TaskManager] Completed command task: 'CallGenome+removeTmpDir' launched from sub-workflow 'CallGenome'
[2026-06-05T13:59:55.145557Z] [nf-e3503de90c5758a7974ce8ed69ec2a1d-db1bb-5m77g] [618_1] [TaskManager] Completed sub-workflow task: 'CallGenome' launched from master workflow
[2026-06-05T14:00:00.071702Z] [nf-e3503de90c5758a7974ce8ed69ec2a1d-db1bb-5m77g] [618_1] [WorkflowRunner] Strelka somatic workflow successfully completed.
[2026-06-05T14:00:00.071702Z] [nf-e3503de90c5758a7974ce8ed69ec2a1d-db1bb-5m77g] [618_1] [WorkflowRunner] 
[2026-06-05T14:00:00.071702Z] [nf-e3503de90c5758a7974ce8ed69ec2a1d-db1bb-5m77g] [618_1] [WorkflowRunner] 	workflow version: 2.9.10
[2026-06-05T14:00:00.071755Z] [nf-e3503de90c5758a7974ce8ed69ec2a1d-db1bb-5m77g] [618_1] [WorkflowRunner] 
[2026-06-05T14:00:00.071762Z] [nf-e3503de90c5758a7974ce8ed69ec2a1d-db1bb-5m77g] [618_1] [WorkflowRunner] Workflow successfully completed all tasks
[2026-06-05T14:00:00.071768Z] [nf-e3503de90c5758a7974ce8ed69ec2a1d-db1bb-5m77g] [618_1] [WorkflowRunner] Elapsed time for full workflow: 10 sec