File Info

Filename
.command.err
Full Path
s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/17/c713215a03b40d794ef524c0aa2a21/.command.err
Size
63.3 KB
Task
DAQ:CONTROL_VARIANT_CALLING:CONTROL_SOMATIC_VC:BAM_VARIANT_CALLING_SOMATIC_STRELKA:STRELKA_SOMATIC (negative_somatic_control_2;chr1_68991-70108.bed)
Attempt

Content

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[2026-06-05T13:59:50.430681Z] [nf-17c713215a03b40d794ef524c0aa2a21-939ef-8wnmd] [615_1] [WorkflowRunner] Initiating pyFlow run
[2026-06-05T13:59:50.431582Z] [nf-17c713215a03b40d794ef524c0aa2a21-939ef-8wnmd] [615_1] [WorkflowRunner] pyFlowClientWorkflowClass: StrelkaSomaticWorkflow
[2026-06-05T13:59:50.431595Z] [nf-17c713215a03b40d794ef524c0aa2a21-939ef-8wnmd] [615_1] [WorkflowRunner] pyFlowVersion: 1.1.20
[2026-06-05T13:59:50.431599Z] [nf-17c713215a03b40d794ef524c0aa2a21-939ef-8wnmd] [615_1] [WorkflowRunner] pythonVersion: 2.7.15.final.0
[2026-06-05T13:59:50.431603Z] [nf-17c713215a03b40d794ef524c0aa2a21-939ef-8wnmd] [615_1] [WorkflowRunner] WorkingDir: '/tmp/nxf.XXXXpSMad1'
[2026-06-05T13:59:50.431607Z] [nf-17c713215a03b40d794ef524c0aa2a21-939ef-8wnmd] [615_1] [WorkflowRunner] ProcessCmdLine: '/var/tmp/strelka/runWorkflow.py -m local -j 8'
[2026-06-05T13:59:50.431613Z] [nf-17c713215a03b40d794ef524c0aa2a21-939ef-8wnmd] [615_1] [WorkflowRunner] [RunParameters] mode: local
[2026-06-05T13:59:50.431616Z] [nf-17c713215a03b40d794ef524c0aa2a21-939ef-8wnmd] [615_1] [WorkflowRunner] [RunParameters] nCores: 8
[2026-06-05T13:59:50.431620Z] [nf-17c713215a03b40d794ef524c0aa2a21-939ef-8wnmd] [615_1] [WorkflowRunner] [RunParameters] memMb: 3096076
[2026-06-05T13:59:50.431623Z] [nf-17c713215a03b40d794ef524c0aa2a21-939ef-8wnmd] [615_1] [WorkflowRunner] [RunParameters] dataDir: /var/tmp/strelka/workspace/pyflow.data
[2026-06-05T13:59:50.431627Z] [nf-17c713215a03b40d794ef524c0aa2a21-939ef-8wnmd] [615_1] [WorkflowRunner] [RunParameters] isDryRun: False
[2026-06-05T13:59:50.431631Z] [nf-17c713215a03b40d794ef524c0aa2a21-939ef-8wnmd] [615_1] [WorkflowRunner] [RunParameters] isContinue: False
[2026-06-05T13:59:50.431634Z] [nf-17c713215a03b40d794ef524c0aa2a21-939ef-8wnmd] [615_1] [WorkflowRunner] [RunParameters] isForceContinue: True
[2026-06-05T13:59:50.431638Z] [nf-17c713215a03b40d794ef524c0aa2a21-939ef-8wnmd] [615_1] [WorkflowRunner] [RunParameters] mailTo: ''
[2026-06-05T13:59:50.432604Z] [nf-17c713215a03b40d794ef524c0aa2a21-939ef-8wnmd] [615_1] [TaskRunner:masterWorkflow] Starting task specification for master workflow
[2026-06-05T13:59:50.432729Z] [nf-17c713215a03b40d794ef524c0aa2a21-939ef-8wnmd] [615_1] [StrelkaSomaticWorkflow] Initiating Strelka somatic workflow version: 2.9.10
[2026-06-05T13:59:50.438814Z] [nf-17c713215a03b40d794ef524c0aa2a21-939ef-8wnmd] [615_1] [WorkflowRunner] Adding sub-workflow task 'CallGenome' to master workflow
[2026-06-05T13:59:50.439923Z] [nf-17c713215a03b40d794ef524c0aa2a21-939ef-8wnmd] [615_1] [TaskManager] Launching sub-workflow task: 'CallGenome' from master workflow
[2026-06-05T13:59:50.440481Z] [nf-17c713215a03b40d794ef524c0aa2a21-939ef-8wnmd] [615_1] [TaskRunner:masterWorkflow] Finished task specification for master workflow
[2026-06-05T13:59:50.440697Z] [nf-17c713215a03b40d794ef524c0aa2a21-939ef-8wnmd] [615_1] [TaskRunner:CallGenome] Starting task specification for sub-workflow
[2026-06-05T13:59:50.441005Z] [nf-17c713215a03b40d794ef524c0aa2a21-939ef-8wnmd] [615_1] [WorkflowRunner] Adding command task 'CallGenome+makeTmpDir' to sub-workflow 'CallGenome'
[2026-06-05T13:59:50.441378Z] [nf-17c713215a03b40d794ef524c0aa2a21-939ef-8wnmd] [615_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0000' to sub-workflow 'CallGenome'
[2026-06-05T13:59:50.441477Z] [nf-17c713215a03b40d794ef524c0aa2a21-939ef-8wnmd] [615_1] [WorkflowRunner] Adding command task 'CallGenome+fixVcfHeader_chromId_000_chr1_0000' to sub-workflow 'CallGenome'
[2026-06-05T13:59:50.441547Z] [nf-17c713215a03b40d794ef524c0aa2a21-939ef-8wnmd] [615_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0000' to sub-workflow 'CallGenome'
[2026-06-05T13:59:50.441664Z] [nf-17c713215a03b40d794ef524c0aa2a21-939ef-8wnmd] [615_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0001' to sub-workflow 'CallGenome'
[2026-06-05T13:59:50.441730Z] [nf-17c713215a03b40d794ef524c0aa2a21-939ef-8wnmd] [615_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0001' to sub-workflow 'CallGenome'
[2026-06-05T13:59:50.441846Z] [nf-17c713215a03b40d794ef524c0aa2a21-939ef-8wnmd] [615_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0002' to sub-workflow 'CallGenome'
[2026-06-05T13:59:50.441906Z] [nf-17c713215a03b40d794ef524c0aa2a21-939ef-8wnmd] [615_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0002' to sub-workflow 'CallGenome'
[2026-06-05T13:59:50.442019Z] [nf-17c713215a03b40d794ef524c0aa2a21-939ef-8wnmd] [615_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0003' to sub-workflow 'CallGenome'
[2026-06-05T13:59:50.442097Z] [nf-17c713215a03b40d794ef524c0aa2a21-939ef-8wnmd] [615_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0003' to sub-workflow 'CallGenome'
[2026-06-05T13:59:50.442338Z] [nf-17c713215a03b40d794ef524c0aa2a21-939ef-8wnmd] [615_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0004' to sub-workflow 'CallGenome'
[2026-06-05T13:59:50.442401Z] [nf-17c713215a03b40d794ef524c0aa2a21-939ef-8wnmd] [615_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0004' to sub-workflow 'CallGenome'
[2026-06-05T13:59:50.442847Z] [nf-17c713215a03b40d794ef524c0aa2a21-939ef-8wnmd] [615_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0005' to sub-workflow 'CallGenome'
[2026-06-05T13:59:50.443361Z] [nf-17c713215a03b40d794ef524c0aa2a21-939ef-8wnmd] [615_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0005' to sub-workflow 'CallGenome'
[2026-06-05T13:59:50.443519Z] [nf-17c713215a03b40d794ef524c0aa2a21-939ef-8wnmd] [615_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0006' to sub-workflow 'CallGenome'
[2026-06-05T13:59:50.443781Z] [nf-17c713215a03b40d794ef524c0aa2a21-939ef-8wnmd] [615_1] [TaskManager] Launching command task: 'CallGenome+makeTmpDir' from sub-workflow 'CallGenome'
[2026-06-05T13:59:50.444345Z] [nf-17c713215a03b40d794ef524c0aa2a21-939ef-8wnmd] [615_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0006' to sub-workflow 'CallGenome'
[2026-06-05T13:59:50.444932Z] [nf-17c713215a03b40d794ef524c0aa2a21-939ef-8wnmd] [615_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0007' to sub-workflow 'CallGenome'
[2026-06-05T13:59:50.447550Z] [nf-17c713215a03b40d794ef524c0aa2a21-939ef-8wnmd] [615_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0007' to sub-workflow 'CallGenome'
[2026-06-05T13:59:50.448676Z] [nf-17c713215a03b40d794ef524c0aa2a21-939ef-8wnmd] [615_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0008' to sub-workflow 'CallGenome'
[2026-06-05T13:59:50.449054Z] [nf-17c713215a03b40d794ef524c0aa2a21-939ef-8wnmd] [615_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0008' to sub-workflow 'CallGenome'
[2026-06-05T13:59:50.449437Z] [nf-17c713215a03b40d794ef524c0aa2a21-939ef-8wnmd] [615_1] [TaskRunner:CallGenome+makeTmpDir] Task initiated on local node
[2026-06-05T13:59:50.449855Z] [nf-17c713215a03b40d794ef524c0aa2a21-939ef-8wnmd] [615_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0009' to sub-workflow 'CallGenome'
[2026-06-05T13:59:50.450117Z] [nf-17c713215a03b40d794ef524c0aa2a21-939ef-8wnmd] [615_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0009' to sub-workflow 'CallGenome'
[2026-06-05T13:59:50.450342Z] [nf-17c713215a03b40d794ef524c0aa2a21-939ef-8wnmd] [615_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0010' to sub-workflow 'CallGenome'
[2026-06-05T13:59:50.450866Z] [nf-17c713215a03b40d794ef524c0aa2a21-939ef-8wnmd] [615_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0010' to sub-workflow 'CallGenome'
[2026-06-05T13:59:50.451075Z] [nf-17c713215a03b40d794ef524c0aa2a21-939ef-8wnmd] [615_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0011' to sub-workflow 'CallGenome'
[2026-06-05T13:59:50.451211Z] [nf-17c713215a03b40d794ef524c0aa2a21-939ef-8wnmd] [615_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0011' to sub-workflow 'CallGenome'
[2026-06-05T13:59:50.451338Z] [nf-17c713215a03b40d794ef524c0aa2a21-939ef-8wnmd] [615_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0012' to sub-workflow 'CallGenome'
[2026-06-05T13:59:50.451409Z] [nf-17c713215a03b40d794ef524c0aa2a21-939ef-8wnmd] [615_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0012' to sub-workflow 'CallGenome'
[2026-06-05T13:59:50.451524Z] [nf-17c713215a03b40d794ef524c0aa2a21-939ef-8wnmd] [615_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0013' to sub-workflow 'CallGenome'
[2026-06-05T13:59:50.451593Z] [nf-17c713215a03b40d794ef524c0aa2a21-939ef-8wnmd] [615_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0013' to sub-workflow 'CallGenome'
[2026-06-05T13:59:50.451842Z] [nf-17c713215a03b40d794ef524c0aa2a21-939ef-8wnmd] [615_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0014' to sub-workflow 'CallGenome'
[2026-06-05T13:59:50.452168Z] [nf-17c713215a03b40d794ef524c0aa2a21-939ef-8wnmd] [615_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0014' to sub-workflow 'CallGenome'
[2026-06-05T13:59:50.452301Z] [nf-17c713215a03b40d794ef524c0aa2a21-939ef-8wnmd] [615_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0015' to sub-workflow 'CallGenome'
[2026-06-05T13:59:50.452368Z] [nf-17c713215a03b40d794ef524c0aa2a21-939ef-8wnmd] [615_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0015' to sub-workflow 'CallGenome'
[2026-06-05T13:59:50.452481Z] [nf-17c713215a03b40d794ef524c0aa2a21-939ef-8wnmd] [615_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0016' to sub-workflow 'CallGenome'
[2026-06-05T13:59:50.452543Z] [nf-17c713215a03b40d794ef524c0aa2a21-939ef-8wnmd] [615_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0016' to sub-workflow 'CallGenome'
[2026-06-05T13:59:50.452656Z] [nf-17c713215a03b40d794ef524c0aa2a21-939ef-8wnmd] [615_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0017' to sub-workflow 'CallGenome'
[2026-06-05T13:59:50.452719Z] [nf-17c713215a03b40d794ef524c0aa2a21-939ef-8wnmd] [615_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0017' to sub-workflow 'CallGenome'
[2026-06-05T13:59:50.452836Z] [nf-17c713215a03b40d794ef524c0aa2a21-939ef-8wnmd] [615_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0018' to sub-workflow 'CallGenome'
[2026-06-05T13:59:50.452896Z] [nf-17c713215a03b40d794ef524c0aa2a21-939ef-8wnmd] [615_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0018' to sub-workflow 'CallGenome'
[2026-06-05T13:59:50.453009Z] [nf-17c713215a03b40d794ef524c0aa2a21-939ef-8wnmd] [615_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0019' to sub-workflow 'CallGenome'
[2026-06-05T13:59:50.453077Z] [nf-17c713215a03b40d794ef524c0aa2a21-939ef-8wnmd] [615_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0019' to sub-workflow 'CallGenome'
[2026-06-05T13:59:50.453781Z] [nf-17c713215a03b40d794ef524c0aa2a21-939ef-8wnmd] [615_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0020' to sub-workflow 'CallGenome'
[2026-06-05T13:59:50.454111Z] [nf-17c713215a03b40d794ef524c0aa2a21-939ef-8wnmd] [615_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0020' to sub-workflow 'CallGenome'
[2026-06-05T13:59:50.454226Z] [nf-17c713215a03b40d794ef524c0aa2a21-939ef-8wnmd] [615_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0000' to sub-workflow 'CallGenome'
[2026-06-05T13:59:50.454294Z] [nf-17c713215a03b40d794ef524c0aa2a21-939ef-8wnmd] [615_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0000' to sub-workflow 'CallGenome'
[2026-06-05T13:59:50.454473Z] [nf-17c713215a03b40d794ef524c0aa2a21-939ef-8wnmd] [615_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0001' to sub-workflow 'CallGenome'
[2026-06-05T13:59:50.454538Z] [nf-17c713215a03b40d794ef524c0aa2a21-939ef-8wnmd] [615_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0001' to sub-workflow 'CallGenome'
[2026-06-05T13:59:50.454649Z] [nf-17c713215a03b40d794ef524c0aa2a21-939ef-8wnmd] [615_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0002' to sub-workflow 'CallGenome'
[2026-06-05T13:59:50.454717Z] [nf-17c713215a03b40d794ef524c0aa2a21-939ef-8wnmd] [615_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0002' to sub-workflow 'CallGenome'
[2026-06-05T13:59:50.454831Z] [nf-17c713215a03b40d794ef524c0aa2a21-939ef-8wnmd] [615_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0003' to sub-workflow 'CallGenome'
[2026-06-05T13:59:50.454891Z] [nf-17c713215a03b40d794ef524c0aa2a21-939ef-8wnmd] [615_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0003' to sub-workflow 'CallGenome'
[2026-06-05T13:59:50.455005Z] [nf-17c713215a03b40d794ef524c0aa2a21-939ef-8wnmd] [615_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0004' to sub-workflow 'CallGenome'
[2026-06-05T13:59:50.455068Z] [nf-17c713215a03b40d794ef524c0aa2a21-939ef-8wnmd] [615_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0004' to sub-workflow 'CallGenome'
[2026-06-05T13:59:50.455256Z] [nf-17c713215a03b40d794ef524c0aa2a21-939ef-8wnmd] [615_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0005' to sub-workflow 'CallGenome'
[2026-06-05T13:59:50.455727Z] [nf-17c713215a03b40d794ef524c0aa2a21-939ef-8wnmd] [615_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0005' to sub-workflow 'CallGenome'
[2026-06-05T13:59:50.455842Z] [nf-17c713215a03b40d794ef524c0aa2a21-939ef-8wnmd] [615_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0006' to sub-workflow 'CallGenome'
[2026-06-05T13:59:50.455908Z] [nf-17c713215a03b40d794ef524c0aa2a21-939ef-8wnmd] [615_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0006' to sub-workflow 'CallGenome'
[2026-06-05T13:59:50.456019Z] [nf-17c713215a03b40d794ef524c0aa2a21-939ef-8wnmd] [615_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0007' to sub-workflow 'CallGenome'
[2026-06-05T13:59:50.456080Z] [nf-17c713215a03b40d794ef524c0aa2a21-939ef-8wnmd] [615_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0007' to sub-workflow 'CallGenome'
[2026-06-05T13:59:50.456190Z] [nf-17c713215a03b40d794ef524c0aa2a21-939ef-8wnmd] [615_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0008' to sub-workflow 'CallGenome'
[2026-06-05T13:59:50.456252Z] [nf-17c713215a03b40d794ef524c0aa2a21-939ef-8wnmd] [615_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0008' to sub-workflow 'CallGenome'
[2026-06-05T13:59:50.456357Z] [nf-17c713215a03b40d794ef524c0aa2a21-939ef-8wnmd] [615_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0009' to sub-workflow 'CallGenome'
[2026-06-05T13:59:50.456423Z] [nf-17c713215a03b40d794ef524c0aa2a21-939ef-8wnmd] [615_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0009' to sub-workflow 'CallGenome'
[2026-06-05T13:59:50.456530Z] [nf-17c713215a03b40d794ef524c0aa2a21-939ef-8wnmd] [615_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0010' to sub-workflow 'CallGenome'
[2026-06-05T13:59:50.456590Z] [nf-17c713215a03b40d794ef524c0aa2a21-939ef-8wnmd] [615_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0010' to sub-workflow 'CallGenome'
[2026-06-05T13:59:50.472027Z] [nf-17c713215a03b40d794ef524c0aa2a21-939ef-8wnmd] [615_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0011' to sub-workflow 'CallGenome'
[2026-06-05T13:59:50.472133Z] [nf-17c713215a03b40d794ef524c0aa2a21-939ef-8wnmd] [615_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0011' to sub-workflow 'CallGenome'
[2026-06-05T13:59:50.472207Z] [nf-17c713215a03b40d794ef524c0aa2a21-939ef-8wnmd] [615_1] [WorkflowRunner] Adding command task 'CallGenome+completedAllGenomeSegments' to sub-workflow 'CallGenome'
[2026-06-05T13:59:50.472386Z] [nf-17c713215a03b40d794ef524c0aa2a21-939ef-8wnmd] [615_1] [WorkflowRunner] Adding command task 'CallGenome+SNV_concat_vcf' to sub-workflow 'CallGenome'
[2026-06-05T13:59:50.472460Z] [nf-17c713215a03b40d794ef524c0aa2a21-939ef-8wnmd] [615_1] [WorkflowRunner] Adding command task 'CallGenome+SNV_index_vcf' to sub-workflow 'CallGenome'
[2026-06-05T13:59:50.472548Z] [nf-17c713215a03b40d794ef524c0aa2a21-939ef-8wnmd] [615_1] [WorkflowRunner] Adding command task 'CallGenome+Indel_concat_vcf' to sub-workflow 'CallGenome'
[2026-06-05T13:59:50.472621Z] [nf-17c713215a03b40d794ef524c0aa2a21-939ef-8wnmd] [615_1] [WorkflowRunner] Adding command task 'CallGenome+Indel_index_vcf' to sub-workflow 'CallGenome'
[2026-06-05T13:59:50.474552Z] [nf-17c713215a03b40d794ef524c0aa2a21-939ef-8wnmd] [615_1] [WorkflowRunner] Adding command task 'CallGenome+mergeRunStats' to sub-workflow 'CallGenome'
[2026-06-05T13:59:50.474840Z] [nf-17c713215a03b40d794ef524c0aa2a21-939ef-8wnmd] [615_1] [WorkflowRunner] Adding command task 'CallGenome+removeTmpDir' to sub-workflow 'CallGenome'
[2026-06-05T13:59:50.475400Z] [nf-17c713215a03b40d794ef524c0aa2a21-939ef-8wnmd] [615_1] [TaskRunner:CallGenome] Finished task specification for sub-workflow
[2026-06-05T13:59:50.481014Z] [nf-17c713215a03b40d794ef524c0aa2a21-939ef-8wnmd] [615_1] [TaskManager] Completed command task: 'CallGenome+makeTmpDir' launched from sub-workflow 'CallGenome'
[2026-06-05T13:59:50.481739Z] [nf-17c713215a03b40d794ef524c0aa2a21-939ef-8wnmd] [615_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0006' from sub-workflow 'CallGenome'
[2026-06-05T13:59:50.482519Z] [nf-17c713215a03b40d794ef524c0aa2a21-939ef-8wnmd] [615_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0003' from sub-workflow 'CallGenome'
[2026-06-05T13:59:50.483262Z] [nf-17c713215a03b40d794ef524c0aa2a21-939ef-8wnmd] [615_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0003' from sub-workflow 'CallGenome'
[2026-06-05T13:59:50.484422Z] [nf-17c713215a03b40d794ef524c0aa2a21-939ef-8wnmd] [615_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0000' from sub-workflow 'CallGenome'
[2026-06-05T13:59:50.487390Z] [nf-17c713215a03b40d794ef524c0aa2a21-939ef-8wnmd] [615_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0014' from sub-workflow 'CallGenome'
[2026-06-05T13:59:50.487817Z] [nf-17c713215a03b40d794ef524c0aa2a21-939ef-8wnmd] [615_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0006] Task initiated on local node
[2026-06-05T13:59:50.488504Z] [nf-17c713215a03b40d794ef524c0aa2a21-939ef-8wnmd] [615_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0000' from sub-workflow 'CallGenome'
[2026-06-05T13:59:50.489644Z] [nf-17c713215a03b40d794ef524c0aa2a21-939ef-8wnmd] [615_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0016' from sub-workflow 'CallGenome'
[2026-06-05T13:59:50.493856Z] [nf-17c713215a03b40d794ef524c0aa2a21-939ef-8wnmd] [615_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0003] Task initiated on local node
[2026-06-05T13:59:50.494879Z] [nf-17c713215a03b40d794ef524c0aa2a21-939ef-8wnmd] [615_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0017' from sub-workflow 'CallGenome'
[2026-06-05T13:59:50.500618Z] [nf-17c713215a03b40d794ef524c0aa2a21-939ef-8wnmd] [615_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0003] Task initiated on local node
[2026-06-05T13:59:50.504757Z] [nf-17c713215a03b40d794ef524c0aa2a21-939ef-8wnmd] [615_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0014] Task initiated on local node
[2026-06-05T13:59:50.509317Z] [nf-17c713215a03b40d794ef524c0aa2a21-939ef-8wnmd] [615_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0000] Task initiated on local node
[2026-06-05T13:59:50.514629Z] [nf-17c713215a03b40d794ef524c0aa2a21-939ef-8wnmd] [615_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0000] Task initiated on local node
[2026-06-05T13:59:50.516752Z] [nf-17c713215a03b40d794ef524c0aa2a21-939ef-8wnmd] [615_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0017] Task initiated on local node
[2026-06-05T13:59:50.517933Z] [nf-17c713215a03b40d794ef524c0aa2a21-939ef-8wnmd] [615_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0016] Task initiated on local node
[2026-06-05T13:59:51.318013Z] [nf-17c713215a03b40d794ef524c0aa2a21-939ef-8wnmd] [615_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0003' launched from sub-workflow 'CallGenome'
[2026-06-05T13:59:51.318988Z] [nf-17c713215a03b40d794ef524c0aa2a21-939ef-8wnmd] [615_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0019' from sub-workflow 'CallGenome'
[2026-06-05T13:59:51.323033Z] [nf-17c713215a03b40d794ef524c0aa2a21-939ef-8wnmd] [615_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0019] Task initiated on local node
[2026-06-05T13:59:51.685598Z] [nf-17c713215a03b40d794ef524c0aa2a21-939ef-8wnmd] [615_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0000' launched from sub-workflow 'CallGenome'
[2026-06-05T13:59:51.686527Z] [nf-17c713215a03b40d794ef524c0aa2a21-939ef-8wnmd] [615_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0008' from sub-workflow 'CallGenome'
[2026-06-05T13:59:51.690557Z] [nf-17c713215a03b40d794ef524c0aa2a21-939ef-8wnmd] [615_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0008] Task initiated on local node
[2026-06-05T13:59:51.751539Z] [nf-17c713215a03b40d794ef524c0aa2a21-939ef-8wnmd] [615_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0008' launched from sub-workflow 'CallGenome'
[2026-06-05T13:59:51.751673Z] [nf-17c713215a03b40d794ef524c0aa2a21-939ef-8wnmd] [615_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0006' launched from sub-workflow 'CallGenome'
[2026-06-05T13:59:51.752568Z] [nf-17c713215a03b40d794ef524c0aa2a21-939ef-8wnmd] [615_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0005' from sub-workflow 'CallGenome'
[2026-06-05T13:59:51.753641Z] [nf-17c713215a03b40d794ef524c0aa2a21-939ef-8wnmd] [615_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0011' from sub-workflow 'CallGenome'
[2026-06-05T13:59:51.758100Z] [nf-17c713215a03b40d794ef524c0aa2a21-939ef-8wnmd] [615_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0005] Task initiated on local node
[2026-06-05T13:59:51.759691Z] [nf-17c713215a03b40d794ef524c0aa2a21-939ef-8wnmd] [615_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0011] Task initiated on local node
[2026-06-05T13:59:51.870315Z] [nf-17c713215a03b40d794ef524c0aa2a21-939ef-8wnmd] [615_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0011' launched from sub-workflow 'CallGenome'
[2026-06-05T13:59:51.871392Z] [nf-17c713215a03b40d794ef524c0aa2a21-939ef-8wnmd] [615_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0011' from sub-workflow 'CallGenome'
[2026-06-05T13:59:51.874779Z] [nf-17c713215a03b40d794ef524c0aa2a21-939ef-8wnmd] [615_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0011] Task initiated on local node
[2026-06-05T13:59:51.936025Z] [nf-17c713215a03b40d794ef524c0aa2a21-939ef-8wnmd] [615_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0011' launched from sub-workflow 'CallGenome'
[2026-06-05T13:59:51.937011Z] [nf-17c713215a03b40d794ef524c0aa2a21-939ef-8wnmd] [615_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0001' from sub-workflow 'CallGenome'
[2026-06-05T13:59:51.940463Z] [nf-17c713215a03b40d794ef524c0aa2a21-939ef-8wnmd] [615_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0001] Task initiated on local node
[2026-06-05T13:59:51.941179Z] [nf-17c713215a03b40d794ef524c0aa2a21-939ef-8wnmd] [615_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0016' launched from sub-workflow 'CallGenome'
[2026-06-05T13:59:51.941971Z] [nf-17c713215a03b40d794ef524c0aa2a21-939ef-8wnmd] [615_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0010' from sub-workflow 'CallGenome'
[2026-06-05T13:59:51.945068Z] [nf-17c713215a03b40d794ef524c0aa2a21-939ef-8wnmd] [615_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0010] Task initiated on local node
[2026-06-05T13:59:52.006669Z] [nf-17c713215a03b40d794ef524c0aa2a21-939ef-8wnmd] [615_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0010' launched from sub-workflow 'CallGenome'
[2026-06-05T13:59:52.007724Z] [nf-17c713215a03b40d794ef524c0aa2a21-939ef-8wnmd] [615_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0010' from sub-workflow 'CallGenome'
[2026-06-05T13:59:52.011311Z] [nf-17c713215a03b40d794ef524c0aa2a21-939ef-8wnmd] [615_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0010] Task initiated on local node
[2026-06-05T13:59:52.072578Z] [nf-17c713215a03b40d794ef524c0aa2a21-939ef-8wnmd] [615_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0010' launched from sub-workflow 'CallGenome'
[2026-06-05T13:59:52.073611Z] [nf-17c713215a03b40d794ef524c0aa2a21-939ef-8wnmd] [615_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0003' from sub-workflow 'CallGenome'
[2026-06-05T13:59:52.078106Z] [nf-17c713215a03b40d794ef524c0aa2a21-939ef-8wnmd] [615_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0003] Task initiated on local node
[2026-06-05T13:59:52.139515Z] [nf-17c713215a03b40d794ef524c0aa2a21-939ef-8wnmd] [615_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0003' launched from sub-workflow 'CallGenome'
[2026-06-05T13:59:52.140560Z] [nf-17c713215a03b40d794ef524c0aa2a21-939ef-8wnmd] [615_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0008' from sub-workflow 'CallGenome'
[2026-06-05T13:59:52.144215Z] [nf-17c713215a03b40d794ef524c0aa2a21-939ef-8wnmd] [615_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0008] Task initiated on local node
[2026-06-05T13:59:52.205801Z] [nf-17c713215a03b40d794ef524c0aa2a21-939ef-8wnmd] [615_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0008' launched from sub-workflow 'CallGenome'
[2026-06-05T13:59:52.206830Z] [nf-17c713215a03b40d794ef524c0aa2a21-939ef-8wnmd] [615_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0011' from sub-workflow 'CallGenome'
[2026-06-05T13:59:52.210914Z] [nf-17c713215a03b40d794ef524c0aa2a21-939ef-8wnmd] [615_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0011] Task initiated on local node
[2026-06-05T13:59:52.322196Z] [nf-17c713215a03b40d794ef524c0aa2a21-939ef-8wnmd] [615_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0011' launched from sub-workflow 'CallGenome'
[2026-06-05T13:59:52.323097Z] [nf-17c713215a03b40d794ef524c0aa2a21-939ef-8wnmd] [615_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0011' from sub-workflow 'CallGenome'
[2026-06-05T13:59:52.327084Z] [nf-17c713215a03b40d794ef524c0aa2a21-939ef-8wnmd] [615_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0011] Task initiated on local node
[2026-06-05T13:59:52.388468Z] [nf-17c713215a03b40d794ef524c0aa2a21-939ef-8wnmd] [615_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0011' launched from sub-workflow 'CallGenome'
[2026-06-05T13:59:52.389389Z] [nf-17c713215a03b40d794ef524c0aa2a21-939ef-8wnmd] [615_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0000' from sub-workflow 'CallGenome'
[2026-06-05T13:59:52.392892Z] [nf-17c713215a03b40d794ef524c0aa2a21-939ef-8wnmd] [615_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0000] Task initiated on local node
[2026-06-05T13:59:52.454368Z] [nf-17c713215a03b40d794ef524c0aa2a21-939ef-8wnmd] [615_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0000' launched from sub-workflow 'CallGenome'
[2026-06-05T13:59:52.455327Z] [nf-17c713215a03b40d794ef524c0aa2a21-939ef-8wnmd] [615_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0018' from sub-workflow 'CallGenome'
[2026-06-05T13:59:52.458806Z] [nf-17c713215a03b40d794ef524c0aa2a21-939ef-8wnmd] [615_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0018] Task initiated on local node
[2026-06-05T13:59:52.921428Z] [nf-17c713215a03b40d794ef524c0aa2a21-939ef-8wnmd] [615_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0005' launched from sub-workflow 'CallGenome'
[2026-06-05T13:59:52.922334Z] [nf-17c713215a03b40d794ef524c0aa2a21-939ef-8wnmd] [615_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0006' from sub-workflow 'CallGenome'
[2026-06-05T13:59:52.927233Z] [nf-17c713215a03b40d794ef524c0aa2a21-939ef-8wnmd] [615_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0006] Task initiated on local node
[2026-06-05T13:59:52.988333Z] [nf-17c713215a03b40d794ef524c0aa2a21-939ef-8wnmd] [615_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0006' launched from sub-workflow 'CallGenome'
[2026-06-05T13:59:52.989248Z] [nf-17c713215a03b40d794ef524c0aa2a21-939ef-8wnmd] [615_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0007' from sub-workflow 'CallGenome'
[2026-06-05T13:59:52.993069Z] [nf-17c713215a03b40d794ef524c0aa2a21-939ef-8wnmd] [615_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0007] Task initiated on local node
[2026-06-05T13:59:53.104930Z] [nf-17c713215a03b40d794ef524c0aa2a21-939ef-8wnmd] [615_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0014' launched from sub-workflow 'CallGenome'
[2026-06-05T13:59:53.105835Z] [nf-17c713215a03b40d794ef524c0aa2a21-939ef-8wnmd] [615_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0005' from sub-workflow 'CallGenome'
[2026-06-05T13:59:53.109291Z] [nf-17c713215a03b40d794ef524c0aa2a21-939ef-8wnmd] [615_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0005] Task initiated on local node
[2026-06-05T13:59:53.170297Z] [nf-17c713215a03b40d794ef524c0aa2a21-939ef-8wnmd] [615_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0005' launched from sub-workflow 'CallGenome'
[2026-06-05T13:59:53.171290Z] [nf-17c713215a03b40d794ef524c0aa2a21-939ef-8wnmd] [615_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0002' from sub-workflow 'CallGenome'
[2026-06-05T13:59:53.175904Z] [nf-17c713215a03b40d794ef524c0aa2a21-939ef-8wnmd] [615_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0002] Task initiated on local node
[2026-06-05T13:59:53.387490Z] [nf-17c713215a03b40d794ef524c0aa2a21-939ef-8wnmd] [615_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0017' launched from sub-workflow 'CallGenome'
[2026-06-05T13:59:53.388334Z] [nf-17c713215a03b40d794ef524c0aa2a21-939ef-8wnmd] [615_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0016' from sub-workflow 'CallGenome'
[2026-06-05T13:59:53.392824Z] [nf-17c713215a03b40d794ef524c0aa2a21-939ef-8wnmd] [615_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0016] Task initiated on local node
[2026-06-05T13:59:53.453344Z] [nf-17c713215a03b40d794ef524c0aa2a21-939ef-8wnmd] [615_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0016' launched from sub-workflow 'CallGenome'
[2026-06-05T13:59:53.454259Z] [nf-17c713215a03b40d794ef524c0aa2a21-939ef-8wnmd] [615_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0013' from sub-workflow 'CallGenome'
[2026-06-05T13:59:53.457833Z] [nf-17c713215a03b40d794ef524c0aa2a21-939ef-8wnmd] [615_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0013] Task initiated on local node
[2026-06-05T13:59:53.519535Z] [nf-17c713215a03b40d794ef524c0aa2a21-939ef-8wnmd] [615_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0000' launched from sub-workflow 'CallGenome'
[2026-06-05T13:59:53.520433Z] [nf-17c713215a03b40d794ef524c0aa2a21-939ef-8wnmd] [615_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0006' from sub-workflow 'CallGenome'
[2026-06-05T13:59:53.524092Z] [nf-17c713215a03b40d794ef524c0aa2a21-939ef-8wnmd] [615_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0006] Task initiated on local node
[2026-06-05T13:59:53.886050Z] [nf-17c713215a03b40d794ef524c0aa2a21-939ef-8wnmd] [615_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0003' launched from sub-workflow 'CallGenome'
[2026-06-05T13:59:53.886913Z] [nf-17c713215a03b40d794ef524c0aa2a21-939ef-8wnmd] [615_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0015' from sub-workflow 'CallGenome'
[2026-06-05T13:59:53.891039Z] [nf-17c713215a03b40d794ef524c0aa2a21-939ef-8wnmd] [615_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0015] Task initiated on local node
[2026-06-05T13:59:54.002248Z] [nf-17c713215a03b40d794ef524c0aa2a21-939ef-8wnmd] [615_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0019' launched from sub-workflow 'CallGenome'
[2026-06-05T13:59:54.003147Z] [nf-17c713215a03b40d794ef524c0aa2a21-939ef-8wnmd] [615_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0017' from sub-workflow 'CallGenome'
[2026-06-05T13:59:54.006894Z] [nf-17c713215a03b40d794ef524c0aa2a21-939ef-8wnmd] [615_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0017] Task initiated on local node
[2026-06-05T13:59:54.068242Z] [nf-17c713215a03b40d794ef524c0aa2a21-939ef-8wnmd] [615_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0017' launched from sub-workflow 'CallGenome'
[2026-06-05T13:59:54.069199Z] [nf-17c713215a03b40d794ef524c0aa2a21-939ef-8wnmd] [615_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0007' from sub-workflow 'CallGenome'
[2026-06-05T13:59:54.073660Z] [nf-17c713215a03b40d794ef524c0aa2a21-939ef-8wnmd] [615_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0007] Task initiated on local node
[2026-06-05T13:59:54.134357Z] [nf-17c713215a03b40d794ef524c0aa2a21-939ef-8wnmd] [615_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0007' launched from sub-workflow 'CallGenome'
[2026-06-05T13:59:54.135415Z] [nf-17c713215a03b40d794ef524c0aa2a21-939ef-8wnmd] [615_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0007' from sub-workflow 'CallGenome'
[2026-06-05T13:59:54.139374Z] [nf-17c713215a03b40d794ef524c0aa2a21-939ef-8wnmd] [615_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0007] Task initiated on local node
[2026-06-05T13:59:54.199527Z] [nf-17c713215a03b40d794ef524c0aa2a21-939ef-8wnmd] [615_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0007' launched from sub-workflow 'CallGenome'
[2026-06-05T13:59:54.200491Z] [nf-17c713215a03b40d794ef524c0aa2a21-939ef-8wnmd] [615_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0012' from sub-workflow 'CallGenome'
[2026-06-05T13:59:54.203773Z] [nf-17c713215a03b40d794ef524c0aa2a21-939ef-8wnmd] [615_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0012] Task initiated on local node
[2026-06-05T13:59:54.315128Z] [nf-17c713215a03b40d794ef524c0aa2a21-939ef-8wnmd] [615_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0018' launched from sub-workflow 'CallGenome'
[2026-06-05T13:59:54.316254Z] [nf-17c713215a03b40d794ef524c0aa2a21-939ef-8wnmd] [615_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0009' from sub-workflow 'CallGenome'
[2026-06-05T13:59:54.319784Z] [nf-17c713215a03b40d794ef524c0aa2a21-939ef-8wnmd] [615_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0009] Task initiated on local node
[2026-06-05T13:59:54.931893Z] [nf-17c713215a03b40d794ef524c0aa2a21-939ef-8wnmd] [615_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0001' launched from sub-workflow 'CallGenome'
[2026-06-05T13:59:54.932856Z] [nf-17c713215a03b40d794ef524c0aa2a21-939ef-8wnmd] [615_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0004' from sub-workflow 'CallGenome'
[2026-06-05T13:59:54.936634Z] [nf-17c713215a03b40d794ef524c0aa2a21-939ef-8wnmd] [615_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0004] Task initiated on local node
[2026-06-05T13:59:55.247827Z] [nf-17c713215a03b40d794ef524c0aa2a21-939ef-8wnmd] [615_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0007' launched from sub-workflow 'CallGenome'
[2026-06-05T13:59:55.247952Z] [nf-17c713215a03b40d794ef524c0aa2a21-939ef-8wnmd] [615_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0002' launched from sub-workflow 'CallGenome'
[2026-06-05T13:59:55.248871Z] [nf-17c713215a03b40d794ef524c0aa2a21-939ef-8wnmd] [615_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0003' from sub-workflow 'CallGenome'
[2026-06-05T13:59:55.249257Z] [nf-17c713215a03b40d794ef524c0aa2a21-939ef-8wnmd] [615_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0001' from sub-workflow 'CallGenome'
[2026-06-05T13:59:55.252727Z] [nf-17c713215a03b40d794ef524c0aa2a21-939ef-8wnmd] [615_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0003] Task initiated on local node
[2026-06-05T13:59:55.254146Z] [nf-17c713215a03b40d794ef524c0aa2a21-939ef-8wnmd] [615_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0001] Task initiated on local node
[2026-06-05T13:59:55.313703Z] [nf-17c713215a03b40d794ef524c0aa2a21-939ef-8wnmd] [615_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0003' launched from sub-workflow 'CallGenome'
[2026-06-05T13:59:55.314633Z] [nf-17c713215a03b40d794ef524c0aa2a21-939ef-8wnmd] [615_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0005' from sub-workflow 'CallGenome'
[2026-06-05T13:59:55.318336Z] [nf-17c713215a03b40d794ef524c0aa2a21-939ef-8wnmd] [615_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0005] Task initiated on local node
[2026-06-05T13:59:55.429183Z] [nf-17c713215a03b40d794ef524c0aa2a21-939ef-8wnmd] [615_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0006' launched from sub-workflow 'CallGenome'
[2026-06-05T13:59:55.430068Z] [nf-17c713215a03b40d794ef524c0aa2a21-939ef-8wnmd] [615_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0006' from sub-workflow 'CallGenome'
[2026-06-05T13:59:55.433433Z] [nf-17c713215a03b40d794ef524c0aa2a21-939ef-8wnmd] [615_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0006] Task initiated on local node
[2026-06-05T13:59:55.494739Z] [nf-17c713215a03b40d794ef524c0aa2a21-939ef-8wnmd] [615_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0006' launched from sub-workflow 'CallGenome'
[2026-06-05T13:59:55.495889Z] [nf-17c713215a03b40d794ef524c0aa2a21-939ef-8wnmd] [615_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0014' from sub-workflow 'CallGenome'
[2026-06-05T13:59:55.499086Z] [nf-17c713215a03b40d794ef524c0aa2a21-939ef-8wnmd] [615_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0014] Task initiated on local node
[2026-06-05T13:59:55.560155Z] [nf-17c713215a03b40d794ef524c0aa2a21-939ef-8wnmd] [615_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0014' launched from sub-workflow 'CallGenome'
[2026-06-05T13:59:55.561053Z] [nf-17c713215a03b40d794ef524c0aa2a21-939ef-8wnmd] [615_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0019' from sub-workflow 'CallGenome'
[2026-06-05T13:59:55.564907Z] [nf-17c713215a03b40d794ef524c0aa2a21-939ef-8wnmd] [615_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0019] Task initiated on local node
[2026-06-05T13:59:55.625844Z] [nf-17c713215a03b40d794ef524c0aa2a21-939ef-8wnmd] [615_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0019' launched from sub-workflow 'CallGenome'
[2026-06-05T13:59:55.626756Z] [nf-17c713215a03b40d794ef524c0aa2a21-939ef-8wnmd] [615_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0007' from sub-workflow 'CallGenome'
[2026-06-05T13:59:55.630142Z] [nf-17c713215a03b40d794ef524c0aa2a21-939ef-8wnmd] [615_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0007] Task initiated on local node
[2026-06-05T13:59:55.691210Z] [nf-17c713215a03b40d794ef524c0aa2a21-939ef-8wnmd] [615_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0007' launched from sub-workflow 'CallGenome'
[2026-06-05T13:59:55.692127Z] [nf-17c713215a03b40d794ef524c0aa2a21-939ef-8wnmd] [615_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0020' from sub-workflow 'CallGenome'
[2026-06-05T13:59:55.695952Z] [nf-17c713215a03b40d794ef524c0aa2a21-939ef-8wnmd] [615_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0020] Task initiated on local node
[2026-06-05T13:59:55.856554Z] [nf-17c713215a03b40d794ef524c0aa2a21-939ef-8wnmd] [615_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0015' launched from sub-workflow 'CallGenome'
[2026-06-05T13:59:55.857468Z] [nf-17c713215a03b40d794ef524c0aa2a21-939ef-8wnmd] [615_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0008' from sub-workflow 'CallGenome'
[2026-06-05T13:59:55.861166Z] [nf-17c713215a03b40d794ef524c0aa2a21-939ef-8wnmd] [615_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0008] Task initiated on local node
[2026-06-05T13:59:56.623361Z] [nf-17c713215a03b40d794ef524c0aa2a21-939ef-8wnmd] [615_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0004' launched from sub-workflow 'CallGenome'
[2026-06-05T13:59:56.624182Z] [nf-17c713215a03b40d794ef524c0aa2a21-939ef-8wnmd] [615_1] [TaskManager] Launching command task: 'CallGenome+fixVcfHeader_chromId_000_chr1_0000' from sub-workflow 'CallGenome'
[2026-06-05T13:59:56.627381Z] [nf-17c713215a03b40d794ef524c0aa2a21-939ef-8wnmd] [615_1] [TaskRunner:CallGenome+fixVcfHeader_chromId_000_chr1_0000] Task initiated on local node
[2026-06-05T13:59:56.688428Z] [nf-17c713215a03b40d794ef524c0aa2a21-939ef-8wnmd] [615_1] [TaskManager] Completed command task: 'CallGenome+fixVcfHeader_chromId_000_chr1_0000' launched from sub-workflow 'CallGenome'
[2026-06-05T13:59:56.689384Z] [nf-17c713215a03b40d794ef524c0aa2a21-939ef-8wnmd] [615_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0000' from sub-workflow 'CallGenome'
[2026-06-05T13:59:56.693493Z] [nf-17c713215a03b40d794ef524c0aa2a21-939ef-8wnmd] [615_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0000] Task initiated on local node
[2026-06-05T13:59:56.721571Z] [nf-17c713215a03b40d794ef524c0aa2a21-939ef-8wnmd] [615_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0012' launched from sub-workflow 'CallGenome'
[2026-06-05T13:59:56.722382Z] [nf-17c713215a03b40d794ef524c0aa2a21-939ef-8wnmd] [615_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0012' from sub-workflow 'CallGenome'
[2026-06-05T13:59:56.726388Z] [nf-17c713215a03b40d794ef524c0aa2a21-939ef-8wnmd] [615_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0012] Task initiated on local node
[2026-06-05T13:59:56.738780Z] [nf-17c713215a03b40d794ef524c0aa2a21-939ef-8wnmd] [615_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0000' launched from sub-workflow 'CallGenome'
[2026-06-05T13:59:56.739851Z] [nf-17c713215a03b40d794ef524c0aa2a21-939ef-8wnmd] [615_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0002' from sub-workflow 'CallGenome'
[2026-06-05T13:59:56.743804Z] [nf-17c713215a03b40d794ef524c0aa2a21-939ef-8wnmd] [615_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0002] Task initiated on local node
[2026-06-05T13:59:56.756200Z] [nf-17c713215a03b40d794ef524c0aa2a21-939ef-8wnmd] [615_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0009' launched from sub-workflow 'CallGenome'
[2026-06-05T13:59:56.756937Z] [nf-17c713215a03b40d794ef524c0aa2a21-939ef-8wnmd] [615_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0009' from sub-workflow 'CallGenome'
[2026-06-05T13:59:56.760403Z] [nf-17c713215a03b40d794ef524c0aa2a21-939ef-8wnmd] [615_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0009] Task initiated on local node
[2026-06-05T13:59:56.765123Z] [nf-17c713215a03b40d794ef524c0aa2a21-939ef-8wnmd] [615_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0012' launched from sub-workflow 'CallGenome'
[2026-06-05T13:59:56.765926Z] [nf-17c713215a03b40d794ef524c0aa2a21-939ef-8wnmd] [615_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0001' from sub-workflow 'CallGenome'
[2026-06-05T13:59:56.768898Z] [nf-17c713215a03b40d794ef524c0aa2a21-939ef-8wnmd] [615_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0001] Task initiated on local node
[2026-06-05T13:59:56.798069Z] [nf-17c713215a03b40d794ef524c0aa2a21-939ef-8wnmd] [615_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0009' launched from sub-workflow 'CallGenome'
[2026-06-05T13:59:56.798189Z] [nf-17c713215a03b40d794ef524c0aa2a21-939ef-8wnmd] [615_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0002' launched from sub-workflow 'CallGenome'
[2026-06-05T13:59:56.798948Z] [nf-17c713215a03b40d794ef524c0aa2a21-939ef-8wnmd] [615_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0015' from sub-workflow 'CallGenome'
[2026-06-05T13:59:56.799464Z] [nf-17c713215a03b40d794ef524c0aa2a21-939ef-8wnmd] [615_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0004' from sub-workflow 'CallGenome'
[2026-06-05T13:59:56.804542Z] [nf-17c713215a03b40d794ef524c0aa2a21-939ef-8wnmd] [615_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0015] Task initiated on local node
[2026-06-05T13:59:56.805499Z] [nf-17c713215a03b40d794ef524c0aa2a21-939ef-8wnmd] [615_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0004] Task initiated on local node
[2026-06-05T13:59:56.808253Z] [nf-17c713215a03b40d794ef524c0aa2a21-939ef-8wnmd] [615_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0001' launched from sub-workflow 'CallGenome'
[2026-06-05T13:59:56.809008Z] [nf-17c713215a03b40d794ef524c0aa2a21-939ef-8wnmd] [615_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0002' from sub-workflow 'CallGenome'
[2026-06-05T13:59:56.812363Z] [nf-17c713215a03b40d794ef524c0aa2a21-939ef-8wnmd] [615_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0002] Task initiated on local node
[2026-06-05T13:59:56.841488Z] [nf-17c713215a03b40d794ef524c0aa2a21-939ef-8wnmd] [615_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0015' launched from sub-workflow 'CallGenome'
[2026-06-05T13:59:56.842277Z] [nf-17c713215a03b40d794ef524c0aa2a21-939ef-8wnmd] [615_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0010' from sub-workflow 'CallGenome'
[2026-06-05T13:59:56.845553Z] [nf-17c713215a03b40d794ef524c0aa2a21-939ef-8wnmd] [615_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0010] Task initiated on local node
[2026-06-05T13:59:56.906559Z] [nf-17c713215a03b40d794ef524c0aa2a21-939ef-8wnmd] [615_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0013' launched from sub-workflow 'CallGenome'
[2026-06-05T13:59:56.907350Z] [nf-17c713215a03b40d794ef524c0aa2a21-939ef-8wnmd] [615_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0013' from sub-workflow 'CallGenome'
[2026-06-05T13:59:56.910922Z] [nf-17c713215a03b40d794ef524c0aa2a21-939ef-8wnmd] [615_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0013] Task initiated on local node
[2026-06-05T13:59:56.971674Z] [nf-17c713215a03b40d794ef524c0aa2a21-939ef-8wnmd] [615_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0013' launched from sub-workflow 'CallGenome'
[2026-06-05T13:59:56.971779Z] [nf-17c713215a03b40d794ef524c0aa2a21-939ef-8wnmd] [615_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0008' launched from sub-workflow 'CallGenome'
[2026-06-05T13:59:56.972657Z] [nf-17c713215a03b40d794ef524c0aa2a21-939ef-8wnmd] [615_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0008' from sub-workflow 'CallGenome'
[2026-06-05T13:59:56.973383Z] [nf-17c713215a03b40d794ef524c0aa2a21-939ef-8wnmd] [615_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0018' from sub-workflow 'CallGenome'
[2026-06-05T13:59:56.977456Z] [nf-17c713215a03b40d794ef524c0aa2a21-939ef-8wnmd] [615_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0018] Task initiated on local node
[2026-06-05T13:59:56.979248Z] [nf-17c713215a03b40d794ef524c0aa2a21-939ef-8wnmd] [615_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0008] Task initiated on local node
[2026-06-05T13:59:57.038231Z] [nf-17c713215a03b40d794ef524c0aa2a21-939ef-8wnmd] [615_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0008' launched from sub-workflow 'CallGenome'
[2026-06-05T13:59:57.038330Z] [nf-17c713215a03b40d794ef524c0aa2a21-939ef-8wnmd] [615_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0018' launched from sub-workflow 'CallGenome'
[2026-06-05T13:59:57.038976Z] [nf-17c713215a03b40d794ef524c0aa2a21-939ef-8wnmd] [615_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0004' from sub-workflow 'CallGenome'
[2026-06-05T13:59:57.039597Z] [nf-17c713215a03b40d794ef524c0aa2a21-939ef-8wnmd] [615_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0009' from sub-workflow 'CallGenome'
[2026-06-05T13:59:57.043363Z] [nf-17c713215a03b40d794ef524c0aa2a21-939ef-8wnmd] [615_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0004] Task initiated on local node
[2026-06-05T13:59:57.045009Z] [nf-17c713215a03b40d794ef524c0aa2a21-939ef-8wnmd] [615_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0009] Task initiated on local node
[2026-06-05T13:59:57.104319Z] [nf-17c713215a03b40d794ef524c0aa2a21-939ef-8wnmd] [615_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0004' launched from sub-workflow 'CallGenome'
[2026-06-05T13:59:57.104401Z] [nf-17c713215a03b40d794ef524c0aa2a21-939ef-8wnmd] [615_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0009' launched from sub-workflow 'CallGenome'
[2026-06-05T13:59:57.105038Z] [nf-17c713215a03b40d794ef524c0aa2a21-939ef-8wnmd] [615_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0009' from sub-workflow 'CallGenome'
[2026-06-05T13:59:57.109146Z] [nf-17c713215a03b40d794ef524c0aa2a21-939ef-8wnmd] [615_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0009] Task initiated on local node
[2026-06-05T13:59:57.169801Z] [nf-17c713215a03b40d794ef524c0aa2a21-939ef-8wnmd] [615_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0009' launched from sub-workflow 'CallGenome'
[2026-06-05T13:59:57.334127Z] [nf-17c713215a03b40d794ef524c0aa2a21-939ef-8wnmd] [615_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0010' launched from sub-workflow 'CallGenome'
[2026-06-05T13:59:57.334811Z] [nf-17c713215a03b40d794ef524c0aa2a21-939ef-8wnmd] [615_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0010' from sub-workflow 'CallGenome'
[2026-06-05T13:59:57.338134Z] [nf-17c713215a03b40d794ef524c0aa2a21-939ef-8wnmd] [615_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0010] Task initiated on local node
[2026-06-05T13:59:57.399152Z] [nf-17c713215a03b40d794ef524c0aa2a21-939ef-8wnmd] [615_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0010' launched from sub-workflow 'CallGenome'
[2026-06-05T13:59:57.463222Z] [nf-17c713215a03b40d794ef524c0aa2a21-939ef-8wnmd] [615_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0005' launched from sub-workflow 'CallGenome'
[2026-06-05T13:59:57.463845Z] [nf-17c713215a03b40d794ef524c0aa2a21-939ef-8wnmd] [615_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0005' from sub-workflow 'CallGenome'
[2026-06-05T13:59:57.468171Z] [nf-17c713215a03b40d794ef524c0aa2a21-939ef-8wnmd] [615_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0005] Task initiated on local node
[2026-06-05T13:59:57.528425Z] [nf-17c713215a03b40d794ef524c0aa2a21-939ef-8wnmd] [615_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0001' launched from sub-workflow 'CallGenome'
[2026-06-05T13:59:57.528508Z] [nf-17c713215a03b40d794ef524c0aa2a21-939ef-8wnmd] [615_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0005' launched from sub-workflow 'CallGenome'
[2026-06-05T13:59:57.529142Z] [nf-17c713215a03b40d794ef524c0aa2a21-939ef-8wnmd] [615_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0001' from sub-workflow 'CallGenome'
[2026-06-05T13:59:57.532342Z] [nf-17c713215a03b40d794ef524c0aa2a21-939ef-8wnmd] [615_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0001] Task initiated on local node
[2026-06-05T13:59:57.544984Z] [nf-17c713215a03b40d794ef524c0aa2a21-939ef-8wnmd] [615_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0020' launched from sub-workflow 'CallGenome'
[2026-06-05T13:59:57.545532Z] [nf-17c713215a03b40d794ef524c0aa2a21-939ef-8wnmd] [615_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0020' from sub-workflow 'CallGenome'
[2026-06-05T13:59:57.549474Z] [nf-17c713215a03b40d794ef524c0aa2a21-939ef-8wnmd] [615_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0020] Task initiated on local node
[2026-06-05T13:59:57.577991Z] [nf-17c713215a03b40d794ef524c0aa2a21-939ef-8wnmd] [615_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0001' launched from sub-workflow 'CallGenome'
[2026-06-05T13:59:57.581762Z] [nf-17c713215a03b40d794ef524c0aa2a21-939ef-8wnmd] [615_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0020' launched from sub-workflow 'CallGenome'
[2026-06-05T13:59:58.246838Z] [nf-17c713215a03b40d794ef524c0aa2a21-939ef-8wnmd] [615_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0004' launched from sub-workflow 'CallGenome'
[2026-06-05T13:59:58.247337Z] [nf-17c713215a03b40d794ef524c0aa2a21-939ef-8wnmd] [615_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0004' from sub-workflow 'CallGenome'
[2026-06-05T13:59:58.250880Z] [nf-17c713215a03b40d794ef524c0aa2a21-939ef-8wnmd] [615_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0004] Task initiated on local node
[2026-06-05T13:59:58.280238Z] [nf-17c713215a03b40d794ef524c0aa2a21-939ef-8wnmd] [615_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0004' launched from sub-workflow 'CallGenome'
[2026-06-05T13:59:59.095658Z] [nf-17c713215a03b40d794ef524c0aa2a21-939ef-8wnmd] [615_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0002' launched from sub-workflow 'CallGenome'
[2026-06-05T13:59:59.096127Z] [nf-17c713215a03b40d794ef524c0aa2a21-939ef-8wnmd] [615_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0002' from sub-workflow 'CallGenome'
[2026-06-05T13:59:59.099001Z] [nf-17c713215a03b40d794ef524c0aa2a21-939ef-8wnmd] [615_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0002] Task initiated on local node
[2026-06-05T13:59:59.129652Z] [nf-17c713215a03b40d794ef524c0aa2a21-939ef-8wnmd] [615_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0002' launched from sub-workflow 'CallGenome'
[2026-06-05T13:59:59.129893Z] [nf-17c713215a03b40d794ef524c0aa2a21-939ef-8wnmd] [615_1] [TaskManager] Completed command task: 'CallGenome+completedAllGenomeSegments' launched from sub-workflow 'CallGenome'
[2026-06-05T13:59:59.130015Z] [nf-17c713215a03b40d794ef524c0aa2a21-939ef-8wnmd] [615_1] [TaskManager] Launching command task: 'CallGenome+Indel_concat_vcf' from sub-workflow 'CallGenome'
[2026-06-05T13:59:59.130351Z] [nf-17c713215a03b40d794ef524c0aa2a21-939ef-8wnmd] [615_1] [TaskManager] Launching command task: 'CallGenome+SNV_concat_vcf' from sub-workflow 'CallGenome'
[2026-06-05T13:59:59.131030Z] [nf-17c713215a03b40d794ef524c0aa2a21-939ef-8wnmd] [615_1] [TaskManager] Launching command task: 'CallGenome+mergeRunStats' from sub-workflow 'CallGenome'
[2026-06-05T13:59:59.136810Z] [nf-17c713215a03b40d794ef524c0aa2a21-939ef-8wnmd] [615_1] [TaskRunner:CallGenome+Indel_concat_vcf] Task initiated on local node
[2026-06-05T13:59:59.137153Z] [nf-17c713215a03b40d794ef524c0aa2a21-939ef-8wnmd] [615_1] [TaskRunner:CallGenome+SNV_concat_vcf] Task initiated on local node
[2026-06-05T13:59:59.138020Z] [nf-17c713215a03b40d794ef524c0aa2a21-939ef-8wnmd] [615_1] [TaskRunner:CallGenome+mergeRunStats] Task initiated on local node
[2026-06-05T13:59:59.165392Z] [nf-17c713215a03b40d794ef524c0aa2a21-939ef-8wnmd] [615_1] [TaskManager] Completed command task: 'CallGenome+SNV_concat_vcf' launched from sub-workflow 'CallGenome'
[2026-06-05T13:59:59.165472Z] [nf-17c713215a03b40d794ef524c0aa2a21-939ef-8wnmd] [615_1] [TaskManager] Completed command task: 'CallGenome+Indel_concat_vcf' launched from sub-workflow 'CallGenome'
[2026-06-05T13:59:59.165499Z] [nf-17c713215a03b40d794ef524c0aa2a21-939ef-8wnmd] [615_1] [TaskManager] Completed command task: 'CallGenome+mergeRunStats' launched from sub-workflow 'CallGenome'
[2026-06-05T13:59:59.165722Z] [nf-17c713215a03b40d794ef524c0aa2a21-939ef-8wnmd] [615_1] [TaskManager] Launching command task: 'CallGenome+Indel_index_vcf' from sub-workflow 'CallGenome'
[2026-06-05T13:59:59.166087Z] [nf-17c713215a03b40d794ef524c0aa2a21-939ef-8wnmd] [615_1] [TaskManager] Launching command task: 'CallGenome+SNV_index_vcf' from sub-workflow 'CallGenome'
[2026-06-05T13:59:59.169882Z] [nf-17c713215a03b40d794ef524c0aa2a21-939ef-8wnmd] [615_1] [TaskRunner:CallGenome+SNV_index_vcf] Task initiated on local node
[2026-06-05T13:59:59.171200Z] [nf-17c713215a03b40d794ef524c0aa2a21-939ef-8wnmd] [615_1] [TaskRunner:CallGenome+Indel_index_vcf] Task initiated on local node
[2026-06-05T13:59:59.198540Z] [nf-17c713215a03b40d794ef524c0aa2a21-939ef-8wnmd] [615_1] [TaskManager] Completed command task: 'CallGenome+SNV_index_vcf' launched from sub-workflow 'CallGenome'
[2026-06-05T13:59:59.199886Z] [nf-17c713215a03b40d794ef524c0aa2a21-939ef-8wnmd] [615_1] [TaskManager] Completed command task: 'CallGenome+Indel_index_vcf' launched from sub-workflow 'CallGenome'
[2026-06-05T13:59:59.200099Z] [nf-17c713215a03b40d794ef524c0aa2a21-939ef-8wnmd] [615_1] [TaskManager] Launching command task: 'CallGenome+removeTmpDir' from sub-workflow 'CallGenome'
[2026-06-05T13:59:59.202566Z] [nf-17c713215a03b40d794ef524c0aa2a21-939ef-8wnmd] [615_1] [TaskRunner:CallGenome+removeTmpDir] Task initiated on local node
[2026-06-05T13:59:59.232097Z] [nf-17c713215a03b40d794ef524c0aa2a21-939ef-8wnmd] [615_1] [TaskManager] Completed command task: 'CallGenome+removeTmpDir' launched from sub-workflow 'CallGenome'
[2026-06-05T14:00:00.999096Z] [nf-17c713215a03b40d794ef524c0aa2a21-939ef-8wnmd] [615_1] [TaskManager] Completed sub-workflow task: 'CallGenome' launched from master workflow
[2026-06-05T14:00:09.320690Z] [nf-17c713215a03b40d794ef524c0aa2a21-939ef-8wnmd] [615_1] [WorkflowRunner] Strelka somatic workflow successfully completed.
[2026-06-05T14:00:09.320690Z] [nf-17c713215a03b40d794ef524c0aa2a21-939ef-8wnmd] [615_1] [WorkflowRunner] 
[2026-06-05T14:00:09.320690Z] [nf-17c713215a03b40d794ef524c0aa2a21-939ef-8wnmd] [615_1] [WorkflowRunner] 	workflow version: 2.9.10
[2026-06-05T14:00:09.320771Z] [nf-17c713215a03b40d794ef524c0aa2a21-939ef-8wnmd] [615_1] [WorkflowRunner] 
[2026-06-05T14:00:09.320780Z] [nf-17c713215a03b40d794ef524c0aa2a21-939ef-8wnmd] [615_1] [WorkflowRunner] Workflow successfully completed all tasks
[2026-06-05T14:00:09.320788Z] [nf-17c713215a03b40d794ef524c0aa2a21-939ef-8wnmd] [615_1] [WorkflowRunner] Elapsed time for full workflow: 18 sec