cmdline: /opt/conda/share/sentieon-202308.03-3/libexec/driver -r Homo_sapiens_assembly38.fasta -t 12 --interval chr1_69091-70008.bed.gz -i Sig_18_Blood.recalibrated.bam --algo Haplotyper -d dbsnp_146.hg38.vcf.gz --emit_mode variant germline_control_2.haplotyper.chr1_69091-70008.bed.unfiltered.vcf.gz
This software is licensed to bgold@natera.com by Sentieon Inc.
progress 5% @chr1:18362115, elapsed 0.0s, est remaining 0.8s, peak mem 82MB, user 0.1s, sys 0.1s, output queue size 1095
progress 10% @chr1:37752876, elapsed 0.1s, est remaining 0.8s, peak mem 97MB, user 0.1s, sys 0.2s, output queue size 3748
progress 15% @chr1:65408641, elapsed 0.1s, est remaining 0.7s, peak mem 109MB, user 0.2s, sys 0.4s, output queue size 6471
progress 20% @chr1:113834309, elapsed 0.2s, est remaining 0.7s, peak mem 121MB, user 0.2s, sys 0.6s, output queue size 9230
progress 25% @chr1:155247782, elapsed 0.2s, est remaining 0.6s, peak mem 129MB, user 0.2s, sys 0.8s, output queue size 11572
progress 30% @chr1:179102287, elapsed 0.3s, est remaining 0.6s, peak mem 135MB, user 0.2s, sys 1.0s, output queue size 14043
progress 35% @chr1:209795290, elapsed 0.3s, est remaining 0.6s, peak mem 145MB, user 0.3s, sys 1.2s, output queue size 16475
progress 40% @chr1:246913232, elapsed 0.4s, est remaining 0.5s, peak mem 154MB, user 0.3s, sys 1.5s, output queue size 18884
progress 45% @chr2:32575156, elapsed 0.4s, est remaining 0.5s, peak mem 165MB, user 0.3s, sys 1.6s, output queue size 21172
progress 50% @chr2:74457334, elapsed 0.5s, est remaining 0.5s, peak mem 177MB, user 0.4s, sys 1.9s, output queue size 23661
progress 55% @chr2:113628607, elapsed 0.5s, est remaining 0.4s, peak mem 187MB, user 0.4s, sys 2.2s, output queue size 26190
progress 60% @chr2:170954650, elapsed 0.6s, est remaining 0.4s, peak mem 198MB, user 0.4s, sys 2.5s, output queue size 28888
progress 65% @chr2:202765446, elapsed 0.6s, est remaining 0.3s, peak mem 204MB, user 0.5s, sys 2.7s, output queue size 31158
progress 70% @chr2:233771174, elapsed 0.7s, est remaining 0.3s, peak mem 216MB, user 0.5s, sys 2.8s, output queue size 33640
progress 75% @chr3:25618654, elapsed 0.7s, est remaining 0.2s, peak mem 228MB, user 0.5s, sys 3.0s, output queue size 1394
progress 80% @chr3:49804181, elapsed 0.8s, est remaining 0.2s, peak mem 238MB, user 0.5s, sys 3.3s, output queue size 3870
progress 85% @chr3:101859272, elapsed 0.9s, est remaining 0.2s, peak mem 247MB, user 0.6s, sys 3.6s, output queue size 6502
progress 90% @chr3:139561010, elapsed 0.9s, est remaining 0.1s, peak mem 259MB, user 0.6s, sys 3.8s, output queue size 9099
progress 95% @chr3:187741772, elapsed 1.0s, est remaining 0.1s, peak mem 268MB, user 0.7s, sys 4.0s, output queue size 11513
progress 100% @chr4:15059187, elapsed 1.0s, est remaining 0.0s, peak mem 279MB, user 0.7s, sys 4.2s, output queue size 13743
sw version: sentieon-genomics-202308.03
os version: Linux 6.12.88
cpu vendor: GenuineIntel
 signature: 000c06f2
  features: bfebfbff 7ffefbff
  extended: f3bfb7ef fb417ffe
  amd bits: 2c100800 00000121
     brand: INTEL(R) XEON(R) PLATINUM 8559C
threads: 12 max 192
algo: Haplotyper
license: sentieon:Haplotyper=12
input file size: 74586803
output file size: 22307
reads: 1001133
contig: 49651 intervals 9000373 bases
active: 100735 calls 0.001 user 0.002 sys 0.016 real
advance: 51084 calls 0.023 user 0.020 sys 0.020 real
calc: 100735 calls 0.000 user 0.007 sys 0.016 real
done: 1 calls 0.000 user 0.000 sys 0.002 real
execute: 1 calls 0.000 user 0.006 sys 1.893 real
fetch: 100735 calls 0.000 user 0.007 sys 0.016 real
fetch_ref: 100735 calls 0.099 user 0.087 sys 0.365 real
idle: 39 calls 0.008 user 0.023 sys 23.094 real
init: 1 calls 0.043 user 0.011 sys 0.047 real
region: 100735 calls 0.000 user 0.010 sys 0.017 real
tracker: 100735 calls 0.022 user 0.025 sys 0.088 real
overall: 292868096 mem 1.332 user 6.525 sys 3.028 real
ls: cannot access '*.g.vcf.gz': No such file or directory
ls: cannot access '*.g.vcf.gz.tbi': No such file or directory