Downloading: s3://natera-platform-sandbox/pipeline-resources/ngi-igenomes/igenomes/Homo_sapiens/GATK/GRCh38/Sequence/WholeGenomeFasta/Homo_sapiens_assembly38.fasta
  Downloading: s3://natera-platform-sandbox/pipeline-resources/AIH/dna_daq/stored-normals/reference-NA12878-downsampled-500k.bam
  Downloading: s3://natera-platform-sandbox/pipeline-resources/ngi-igenomes/igenomes/Homo_sapiens/GATK/GRCh38/Annotation/intervals/altera_padded_intervals/scatter/chr10_74133927-74134264.bed.gz
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/50/d01d8e710f15ed91c1f097c9359cfb/.command.sh
  Downloading: s3://natera-platform-sandbox/pipeline-resources/ngi-igenomes/igenomes/Homo_sapiens/GATK/GRCh38/Annotation/intervals/altera_padded_intervals/scatter/chr10_74133927-74134264.bed.gz.tbi
  Downloading: s3://natera-platform-sandbox/pipeline-resources/ngi-igenomes/igenomes/Homo_sapiens/GATK/GRCh38/Sequence/WholeGenomeFasta/Homo_sapiens_assembly38.fasta.fai
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/f0/61734391e4f47c8b44be28e79e0683/HCC1395_BL.recalibrated.bam
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/f0/61734391e4f47c8b44be28e79e0683/HCC1395_BL.recalibrated.bam.bai
  Downloading: s3://natera-platform-sandbox/pipeline-resources/AIH/dna_daq/stored-normals/reference-NA12878-downsampled-500k.bam.bai
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/50/d01d8e710f15ed91c1f097c9359cfb/.command.run
==> STAGING COMPLETE (10 inputs)


Successfully created workflow run script.
To execute the workflow, run the following script and set appropriate options:

/var/tmp/strelka/runWorkflow.py
[2026-06-05T14:00:07.987855Z] [nf-50d01d8e710f15ed91c1f097c9359cfb-ab327-xndgl] [599_1] [WorkflowRunner] Initiating pyFlow run
[2026-06-05T14:00:07.989770Z] [nf-50d01d8e710f15ed91c1f097c9359cfb-ab327-xndgl] [599_1] [WorkflowRunner] pyFlowClientWorkflowClass: StrelkaSomaticWorkflow
[2026-06-05T14:00:07.989786Z] [nf-50d01d8e710f15ed91c1f097c9359cfb-ab327-xndgl] [599_1] [WorkflowRunner] pyFlowVersion: 1.1.20
[2026-06-05T14:00:07.989791Z] [nf-50d01d8e710f15ed91c1f097c9359cfb-ab327-xndgl] [599_1] [WorkflowRunner] pythonVersion: 2.7.15.final.0
[2026-06-05T14:00:07.989796Z] [nf-50d01d8e710f15ed91c1f097c9359cfb-ab327-xndgl] [599_1] [WorkflowRunner] WorkingDir: '/tmp/nxf.XXXXi36jyE'
[2026-06-05T14:00:07.989801Z] [nf-50d01d8e710f15ed91c1f097c9359cfb-ab327-xndgl] [599_1] [WorkflowRunner] ProcessCmdLine: '/var/tmp/strelka/runWorkflow.py -m local -j 8'
[2026-06-05T14:00:07.989807Z] [nf-50d01d8e710f15ed91c1f097c9359cfb-ab327-xndgl] [599_1] [WorkflowRunner] [RunParameters] mode: local
[2026-06-05T14:00:07.989811Z] [nf-50d01d8e710f15ed91c1f097c9359cfb-ab327-xndgl] [599_1] [WorkflowRunner] [RunParameters] nCores: 8
[2026-06-05T14:00:07.989815Z] [nf-50d01d8e710f15ed91c1f097c9359cfb-ab327-xndgl] [599_1] [WorkflowRunner] [RunParameters] memMb: 3047507
[2026-06-05T14:00:07.989819Z] [nf-50d01d8e710f15ed91c1f097c9359cfb-ab327-xndgl] [599_1] [WorkflowRunner] [RunParameters] dataDir: /var/tmp/strelka/workspace/pyflow.data
[2026-06-05T14:00:07.989823Z] [nf-50d01d8e710f15ed91c1f097c9359cfb-ab327-xndgl] [599_1] [WorkflowRunner] [RunParameters] isDryRun: False
[2026-06-05T14:00:07.989826Z] [nf-50d01d8e710f15ed91c1f097c9359cfb-ab327-xndgl] [599_1] [WorkflowRunner] [RunParameters] isContinue: False
[2026-06-05T14:00:07.989830Z] [nf-50d01d8e710f15ed91c1f097c9359cfb-ab327-xndgl] [599_1] [WorkflowRunner] [RunParameters] isForceContinue: True
[2026-06-05T14:00:07.989834Z] [nf-50d01d8e710f15ed91c1f097c9359cfb-ab327-xndgl] [599_1] [WorkflowRunner] [RunParameters] mailTo: ''
[2026-06-05T14:00:07.990399Z] [nf-50d01d8e710f15ed91c1f097c9359cfb-ab327-xndgl] [599_1] [TaskRunner:masterWorkflow] Starting task specification for master workflow
[2026-06-05T14:00:07.990512Z] [nf-50d01d8e710f15ed91c1f097c9359cfb-ab327-xndgl] [599_1] [StrelkaSomaticWorkflow] Initiating Strelka somatic workflow version: 2.9.10
[2026-06-05T14:00:07.997547Z] [nf-50d01d8e710f15ed91c1f097c9359cfb-ab327-xndgl] [599_1] [WorkflowRunner] Adding sub-workflow task 'CallGenome' to master workflow
[2026-06-05T14:00:07.998777Z] [nf-50d01d8e710f15ed91c1f097c9359cfb-ab327-xndgl] [599_1] [TaskRunner:masterWorkflow] Finished task specification for master workflow
[2026-06-05T14:00:07.998949Z] [nf-50d01d8e710f15ed91c1f097c9359cfb-ab327-xndgl] [599_1] [TaskManager] Launching sub-workflow task: 'CallGenome' from master workflow
[2026-06-05T14:00:07.999523Z] [nf-50d01d8e710f15ed91c1f097c9359cfb-ab327-xndgl] [599_1] [TaskRunner:CallGenome] Starting task specification for sub-workflow
[2026-06-05T14:00:07.999984Z] [nf-50d01d8e710f15ed91c1f097c9359cfb-ab327-xndgl] [599_1] [WorkflowRunner] Adding command task 'CallGenome+makeTmpDir' to sub-workflow 'CallGenome'
[2026-06-05T14:00:08.000851Z] [nf-50d01d8e710f15ed91c1f097c9359cfb-ab327-xndgl] [599_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0000' to sub-workflow 'CallGenome'
[2026-06-05T14:00:08.000957Z] [nf-50d01d8e710f15ed91c1f097c9359cfb-ab327-xndgl] [599_1] [WorkflowRunner] Adding command task 'CallGenome+fixVcfHeader_chromId_009_chr10_0000' to sub-workflow 'CallGenome'
[2026-06-05T14:00:08.001040Z] [nf-50d01d8e710f15ed91c1f097c9359cfb-ab327-xndgl] [599_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0000' to sub-workflow 'CallGenome'
[2026-06-05T14:00:08.001868Z] [nf-50d01d8e710f15ed91c1f097c9359cfb-ab327-xndgl] [599_1] [TaskManager] Launching command task: 'CallGenome+makeTmpDir' from sub-workflow 'CallGenome'
[2026-06-05T14:00:08.002100Z] [nf-50d01d8e710f15ed91c1f097c9359cfb-ab327-xndgl] [599_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0001' to sub-workflow 'CallGenome'
[2026-06-05T14:00:08.002456Z] [nf-50d01d8e710f15ed91c1f097c9359cfb-ab327-xndgl] [599_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0001' to sub-workflow 'CallGenome'
[2026-06-05T14:00:08.002752Z] [nf-50d01d8e710f15ed91c1f097c9359cfb-ab327-xndgl] [599_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0002' to sub-workflow 'CallGenome'
[2026-06-05T14:00:08.002994Z] [nf-50d01d8e710f15ed91c1f097c9359cfb-ab327-xndgl] [599_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0002' to sub-workflow 'CallGenome'
[2026-06-05T14:00:08.003285Z] [nf-50d01d8e710f15ed91c1f097c9359cfb-ab327-xndgl] [599_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0003' to sub-workflow 'CallGenome'
[2026-06-05T14:00:08.006589Z] [nf-50d01d8e710f15ed91c1f097c9359cfb-ab327-xndgl] [599_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0003' to sub-workflow 'CallGenome'
[2026-06-05T14:00:08.006882Z] [nf-50d01d8e710f15ed91c1f097c9359cfb-ab327-xndgl] [599_1] [TaskRunner:CallGenome+makeTmpDir] Task initiated on local node
[2026-06-05T14:00:08.007389Z] [nf-50d01d8e710f15ed91c1f097c9359cfb-ab327-xndgl] [599_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0004' to sub-workflow 'CallGenome'
[2026-06-05T14:00:08.007617Z] [nf-50d01d8e710f15ed91c1f097c9359cfb-ab327-xndgl] [599_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0004' to sub-workflow 'CallGenome'
[2026-06-05T14:00:08.007738Z] [nf-50d01d8e710f15ed91c1f097c9359cfb-ab327-xndgl] [599_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0005' to sub-workflow 'CallGenome'
[2026-06-05T14:00:08.007805Z] [nf-50d01d8e710f15ed91c1f097c9359cfb-ab327-xndgl] [599_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0005' to sub-workflow 'CallGenome'
[2026-06-05T14:00:08.007918Z] [nf-50d01d8e710f15ed91c1f097c9359cfb-ab327-xndgl] [599_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0006' to sub-workflow 'CallGenome'
[2026-06-05T14:00:08.007982Z] [nf-50d01d8e710f15ed91c1f097c9359cfb-ab327-xndgl] [599_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0006' to sub-workflow 'CallGenome'
[2026-06-05T14:00:08.008095Z] [nf-50d01d8e710f15ed91c1f097c9359cfb-ab327-xndgl] [599_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0007' to sub-workflow 'CallGenome'
[2026-06-05T14:00:08.008158Z] [nf-50d01d8e710f15ed91c1f097c9359cfb-ab327-xndgl] [599_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0007' to sub-workflow 'CallGenome'
[2026-06-05T14:00:08.008346Z] [nf-50d01d8e710f15ed91c1f097c9359cfb-ab327-xndgl] [599_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0008' to sub-workflow 'CallGenome'
[2026-06-05T14:00:08.008415Z] [nf-50d01d8e710f15ed91c1f097c9359cfb-ab327-xndgl] [599_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0008' to sub-workflow 'CallGenome'
[2026-06-05T14:00:08.008528Z] [nf-50d01d8e710f15ed91c1f097c9359cfb-ab327-xndgl] [599_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0009' to sub-workflow 'CallGenome'
[2026-06-05T14:00:08.008715Z] [nf-50d01d8e710f15ed91c1f097c9359cfb-ab327-xndgl] [599_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0009' to sub-workflow 'CallGenome'
[2026-06-05T14:00:08.009203Z] [nf-50d01d8e710f15ed91c1f097c9359cfb-ab327-xndgl] [599_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0010' to sub-workflow 'CallGenome'
[2026-06-05T14:00:08.009475Z] [nf-50d01d8e710f15ed91c1f097c9359cfb-ab327-xndgl] [599_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0010' to sub-workflow 'CallGenome'
[2026-06-05T14:00:08.009605Z] [nf-50d01d8e710f15ed91c1f097c9359cfb-ab327-xndgl] [599_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0011' to sub-workflow 'CallGenome'
[2026-06-05T14:00:08.009673Z] [nf-50d01d8e710f15ed91c1f097c9359cfb-ab327-xndgl] [599_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0011' to sub-workflow 'CallGenome'
[2026-06-05T14:00:08.009788Z] [nf-50d01d8e710f15ed91c1f097c9359cfb-ab327-xndgl] [599_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_010_chr11_0000' to sub-workflow 'CallGenome'
[2026-06-05T14:00:08.009853Z] [nf-50d01d8e710f15ed91c1f097c9359cfb-ab327-xndgl] [599_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_010_chr11_0000' to sub-workflow 'CallGenome'
[2026-06-05T14:00:08.009962Z] [nf-50d01d8e710f15ed91c1f097c9359cfb-ab327-xndgl] [599_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_010_chr11_0001' to sub-workflow 'CallGenome'
[2026-06-05T14:00:08.010039Z] [nf-50d01d8e710f15ed91c1f097c9359cfb-ab327-xndgl] [599_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_010_chr11_0001' to sub-workflow 'CallGenome'
[2026-06-05T14:00:08.010155Z] [nf-50d01d8e710f15ed91c1f097c9359cfb-ab327-xndgl] [599_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_010_chr11_0002' to sub-workflow 'CallGenome'
[2026-06-05T14:00:08.010218Z] [nf-50d01d8e710f15ed91c1f097c9359cfb-ab327-xndgl] [599_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_010_chr11_0002' to sub-workflow 'CallGenome'
[2026-06-05T14:00:08.010330Z] [nf-50d01d8e710f15ed91c1f097c9359cfb-ab327-xndgl] [599_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_010_chr11_0003' to sub-workflow 'CallGenome'
[2026-06-05T14:00:08.010395Z] [nf-50d01d8e710f15ed91c1f097c9359cfb-ab327-xndgl] [599_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_010_chr11_0003' to sub-workflow 'CallGenome'
[2026-06-05T14:00:08.010552Z] [nf-50d01d8e710f15ed91c1f097c9359cfb-ab327-xndgl] [599_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_010_chr11_0004' to sub-workflow 'CallGenome'
[2026-06-05T14:00:08.010813Z] [nf-50d01d8e710f15ed91c1f097c9359cfb-ab327-xndgl] [599_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_010_chr11_0004' to sub-workflow 'CallGenome'
[2026-06-05T14:00:08.011211Z] [nf-50d01d8e710f15ed91c1f097c9359cfb-ab327-xndgl] [599_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_010_chr11_0005' to sub-workflow 'CallGenome'
[2026-06-05T14:00:08.011276Z] [nf-50d01d8e710f15ed91c1f097c9359cfb-ab327-xndgl] [599_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_010_chr11_0005' to sub-workflow 'CallGenome'
[2026-06-05T14:00:08.011388Z] [nf-50d01d8e710f15ed91c1f097c9359cfb-ab327-xndgl] [599_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_010_chr11_0006' to sub-workflow 'CallGenome'
[2026-06-05T14:00:08.011449Z] [nf-50d01d8e710f15ed91c1f097c9359cfb-ab327-xndgl] [599_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_010_chr11_0006' to sub-workflow 'CallGenome'
[2026-06-05T14:00:08.011563Z] [nf-50d01d8e710f15ed91c1f097c9359cfb-ab327-xndgl] [599_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_010_chr11_0007' to sub-workflow 'CallGenome'
[2026-06-05T14:00:08.011630Z] [nf-50d01d8e710f15ed91c1f097c9359cfb-ab327-xndgl] [599_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_010_chr11_0007' to sub-workflow 'CallGenome'
[2026-06-05T14:00:08.011737Z] [nf-50d01d8e710f15ed91c1f097c9359cfb-ab327-xndgl] [599_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_010_chr11_0008' to sub-workflow 'CallGenome'
[2026-06-05T14:00:08.011800Z] [nf-50d01d8e710f15ed91c1f097c9359cfb-ab327-xndgl] [599_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_010_chr11_0008' to sub-workflow 'CallGenome'
[2026-06-05T14:00:08.011913Z] [nf-50d01d8e710f15ed91c1f097c9359cfb-ab327-xndgl] [599_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_010_chr11_0009' to sub-workflow 'CallGenome'
[2026-06-05T14:00:08.011976Z] [nf-50d01d8e710f15ed91c1f097c9359cfb-ab327-xndgl] [599_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_010_chr11_0009' to sub-workflow 'CallGenome'
[2026-06-05T14:00:08.012136Z] [nf-50d01d8e710f15ed91c1f097c9359cfb-ab327-xndgl] [599_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_010_chr11_0010' to sub-workflow 'CallGenome'
[2026-06-05T14:00:08.012208Z] [nf-50d01d8e710f15ed91c1f097c9359cfb-ab327-xndgl] [599_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_010_chr11_0010' to sub-workflow 'CallGenome'
[2026-06-05T14:00:08.012716Z] [nf-50d01d8e710f15ed91c1f097c9359cfb-ab327-xndgl] [599_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_010_chr11_0011' to sub-workflow 'CallGenome'
[2026-06-05T14:00:08.013114Z] [nf-50d01d8e710f15ed91c1f097c9359cfb-ab327-xndgl] [599_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_010_chr11_0011' to sub-workflow 'CallGenome'
[2026-06-05T14:00:08.013267Z] [nf-50d01d8e710f15ed91c1f097c9359cfb-ab327-xndgl] [599_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_011_chr12_0000' to sub-workflow 'CallGenome'
[2026-06-05T14:00:08.013345Z] [nf-50d01d8e710f15ed91c1f097c9359cfb-ab327-xndgl] [599_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_011_chr12_0000' to sub-workflow 'CallGenome'
[2026-06-05T14:00:08.013461Z] [nf-50d01d8e710f15ed91c1f097c9359cfb-ab327-xndgl] [599_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_011_chr12_0001' to sub-workflow 'CallGenome'
[2026-06-05T14:00:08.013525Z] [nf-50d01d8e710f15ed91c1f097c9359cfb-ab327-xndgl] [599_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_011_chr12_0001' to sub-workflow 'CallGenome'
[2026-06-05T14:00:08.013637Z] [nf-50d01d8e710f15ed91c1f097c9359cfb-ab327-xndgl] [599_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_011_chr12_0002' to sub-workflow 'CallGenome'
[2026-06-05T14:00:08.013702Z] [nf-50d01d8e710f15ed91c1f097c9359cfb-ab327-xndgl] [599_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_011_chr12_0002' to sub-workflow 'CallGenome'
[2026-06-05T14:00:08.013807Z] [nf-50d01d8e710f15ed91c1f097c9359cfb-ab327-xndgl] [599_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_011_chr12_0003' to sub-workflow 'CallGenome'
[2026-06-05T14:00:08.013871Z] [nf-50d01d8e710f15ed91c1f097c9359cfb-ab327-xndgl] [599_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_011_chr12_0003' to sub-workflow 'CallGenome'
[2026-06-05T14:00:08.013983Z] [nf-50d01d8e710f15ed91c1f097c9359cfb-ab327-xndgl] [599_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_011_chr12_0004' to sub-workflow 'CallGenome'
[2026-06-05T14:00:08.014045Z] [nf-50d01d8e710f15ed91c1f097c9359cfb-ab327-xndgl] [599_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_011_chr12_0004' to sub-workflow 'CallGenome'
[2026-06-05T14:00:08.014317Z] [nf-50d01d8e710f15ed91c1f097c9359cfb-ab327-xndgl] [599_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_011_chr12_0005' to sub-workflow 'CallGenome'
[2026-06-05T14:00:08.014892Z] [nf-50d01d8e710f15ed91c1f097c9359cfb-ab327-xndgl] [599_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_011_chr12_0005' to sub-workflow 'CallGenome'
[2026-06-05T14:00:08.015011Z] [nf-50d01d8e710f15ed91c1f097c9359cfb-ab327-xndgl] [599_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_011_chr12_0006' to sub-workflow 'CallGenome'
[2026-06-05T14:00:08.015079Z] [nf-50d01d8e710f15ed91c1f097c9359cfb-ab327-xndgl] [599_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_011_chr12_0006' to sub-workflow 'CallGenome'
[2026-06-05T14:00:08.015189Z] [nf-50d01d8e710f15ed91c1f097c9359cfb-ab327-xndgl] [599_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_011_chr12_0007' to sub-workflow 'CallGenome'
[2026-06-05T14:00:08.015251Z] [nf-50d01d8e710f15ed91c1f097c9359cfb-ab327-xndgl] [599_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_011_chr12_0007' to sub-workflow 'CallGenome'
[2026-06-05T14:00:08.015361Z] [nf-50d01d8e710f15ed91c1f097c9359cfb-ab327-xndgl] [599_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_011_chr12_0008' to sub-workflow 'CallGenome'
[2026-06-05T14:00:08.015425Z] [nf-50d01d8e710f15ed91c1f097c9359cfb-ab327-xndgl] [599_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_011_chr12_0008' to sub-workflow 'CallGenome'
[2026-06-05T14:00:08.015535Z] [nf-50d01d8e710f15ed91c1f097c9359cfb-ab327-xndgl] [599_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_011_chr12_0009' to sub-workflow 'CallGenome'
[2026-06-05T14:00:08.015598Z] [nf-50d01d8e710f15ed91c1f097c9359cfb-ab327-xndgl] [599_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_011_chr12_0009' to sub-workflow 'CallGenome'
[2026-06-05T14:00:08.015706Z] [nf-50d01d8e710f15ed91c1f097c9359cfb-ab327-xndgl] [599_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_011_chr12_0010' to sub-workflow 'CallGenome'
[2026-06-05T14:00:08.015769Z] [nf-50d01d8e710f15ed91c1f097c9359cfb-ab327-xndgl] [599_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_011_chr12_0010' to sub-workflow 'CallGenome'
[2026-06-05T14:00:08.033155Z] [nf-50d01d8e710f15ed91c1f097c9359cfb-ab327-xndgl] [599_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_011_chr12_0011' to sub-workflow 'CallGenome'
[2026-06-05T14:00:08.033311Z] [nf-50d01d8e710f15ed91c1f097c9359cfb-ab327-xndgl] [599_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_011_chr12_0011' to sub-workflow 'CallGenome'
[2026-06-05T14:00:08.033395Z] [nf-50d01d8e710f15ed91c1f097c9359cfb-ab327-xndgl] [599_1] [WorkflowRunner] Adding command task 'CallGenome+completedAllGenomeSegments' to sub-workflow 'CallGenome'
[2026-06-05T14:00:08.033583Z] [nf-50d01d8e710f15ed91c1f097c9359cfb-ab327-xndgl] [599_1] [WorkflowRunner] Adding command task 'CallGenome+SNV_concat_vcf' to sub-workflow 'CallGenome'
[2026-06-05T14:00:08.033659Z] [nf-50d01d8e710f15ed91c1f097c9359cfb-ab327-xndgl] [599_1] [WorkflowRunner] Adding command task 'CallGenome+SNV_index_vcf' to sub-workflow 'CallGenome'
[2026-06-05T14:00:08.033765Z] [nf-50d01d8e710f15ed91c1f097c9359cfb-ab327-xndgl] [599_1] [WorkflowRunner] Adding command task 'CallGenome+Indel_concat_vcf' to sub-workflow 'CallGenome'
[2026-06-05T14:00:08.033834Z] [nf-50d01d8e710f15ed91c1f097c9359cfb-ab327-xndgl] [599_1] [WorkflowRunner] Adding command task 'CallGenome+Indel_index_vcf' to sub-workflow 'CallGenome'
[2026-06-05T14:00:08.033972Z] [nf-50d01d8e710f15ed91c1f097c9359cfb-ab327-xndgl] [599_1] [WorkflowRunner] Adding command task 'CallGenome+mergeRunStats' to sub-workflow 'CallGenome'
[2026-06-05T14:00:08.034048Z] [nf-50d01d8e710f15ed91c1f097c9359cfb-ab327-xndgl] [599_1] [WorkflowRunner] Adding command task 'CallGenome+removeTmpDir' to sub-workflow 'CallGenome'
[2026-06-05T14:00:08.034108Z] [nf-50d01d8e710f15ed91c1f097c9359cfb-ab327-xndgl] [599_1] [TaskRunner:CallGenome] Finished task specification for sub-workflow
[2026-06-05T14:00:08.035113Z] [nf-50d01d8e710f15ed91c1f097c9359cfb-ab327-xndgl] [599_1] [TaskManager] Completed command task: 'CallGenome+makeTmpDir' launched from sub-workflow 'CallGenome'
[2026-06-05T14:00:08.036042Z] [nf-50d01d8e710f15ed91c1f097c9359cfb-ab327-xndgl] [599_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0002' from sub-workflow 'CallGenome'
[2026-06-05T14:00:08.036687Z] [nf-50d01d8e710f15ed91c1f097c9359cfb-ab327-xndgl] [599_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0009' from sub-workflow 'CallGenome'
[2026-06-05T14:00:08.037162Z] [nf-50d01d8e710f15ed91c1f097c9359cfb-ab327-xndgl] [599_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0010' from sub-workflow 'CallGenome'
[2026-06-05T14:00:08.038402Z] [nf-50d01d8e710f15ed91c1f097c9359cfb-ab327-xndgl] [599_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0008' from sub-workflow 'CallGenome'
[2026-06-05T14:00:08.039909Z] [nf-50d01d8e710f15ed91c1f097c9359cfb-ab327-xndgl] [599_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0004' from sub-workflow 'CallGenome'
[2026-06-05T14:00:08.041017Z] [nf-50d01d8e710f15ed91c1f097c9359cfb-ab327-xndgl] [599_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0005' from sub-workflow 'CallGenome'
[2026-06-05T14:00:08.042576Z] [nf-50d01d8e710f15ed91c1f097c9359cfb-ab327-xndgl] [599_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0009' from sub-workflow 'CallGenome'
[2026-06-05T14:00:08.043846Z] [nf-50d01d8e710f15ed91c1f097c9359cfb-ab327-xndgl] [599_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0011' from sub-workflow 'CallGenome'
[2026-06-05T14:00:08.048330Z] [nf-50d01d8e710f15ed91c1f097c9359cfb-ab327-xndgl] [599_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_010_chr11_0002] Task initiated on local node
[2026-06-05T14:00:08.055398Z] [nf-50d01d8e710f15ed91c1f097c9359cfb-ab327-xndgl] [599_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0010] Task initiated on local node
[2026-06-05T14:00:08.056468Z] [nf-50d01d8e710f15ed91c1f097c9359cfb-ab327-xndgl] [599_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_011_chr12_0008] Task initiated on local node
[2026-06-05T14:00:08.061872Z] [nf-50d01d8e710f15ed91c1f097c9359cfb-ab327-xndgl] [599_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0009] Task initiated on local node
[2026-06-05T14:00:08.062995Z] [nf-50d01d8e710f15ed91c1f097c9359cfb-ab327-xndgl] [599_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0004] Task initiated on local node
[2026-06-05T14:00:08.067452Z] [nf-50d01d8e710f15ed91c1f097c9359cfb-ab327-xndgl] [599_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_011_chr12_0005] Task initiated on local node
[2026-06-05T14:00:08.071020Z] [nf-50d01d8e710f15ed91c1f097c9359cfb-ab327-xndgl] [599_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_010_chr11_0009] Task initiated on local node
[2026-06-05T14:00:08.072629Z] [nf-50d01d8e710f15ed91c1f097c9359cfb-ab327-xndgl] [599_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0011] Task initiated on local node
[2026-06-05T14:00:08.184447Z] [nf-50d01d8e710f15ed91c1f097c9359cfb-ab327-xndgl] [599_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0004' launched from sub-workflow 'CallGenome'
[2026-06-05T14:00:08.185441Z] [nf-50d01d8e710f15ed91c1f097c9359cfb-ab327-xndgl] [599_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0000' from sub-workflow 'CallGenome'
[2026-06-05T14:00:08.190221Z] [nf-50d01d8e710f15ed91c1f097c9359cfb-ab327-xndgl] [599_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_011_chr12_0000] Task initiated on local node
[2026-06-05T14:00:09.605108Z] [nf-50d01d8e710f15ed91c1f097c9359cfb-ab327-xndgl] [599_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0002' launched from sub-workflow 'CallGenome'
[2026-06-05T14:00:09.606404Z] [nf-50d01d8e710f15ed91c1f097c9359cfb-ab327-xndgl] [599_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0010' from sub-workflow 'CallGenome'
[2026-06-05T14:00:09.610072Z] [nf-50d01d8e710f15ed91c1f097c9359cfb-ab327-xndgl] [599_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_011_chr12_0010] Task initiated on local node
[2026-06-05T14:00:09.671273Z] [nf-50d01d8e710f15ed91c1f097c9359cfb-ab327-xndgl] [599_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0010' launched from sub-workflow 'CallGenome'
[2026-06-05T14:00:09.672559Z] [nf-50d01d8e710f15ed91c1f097c9359cfb-ab327-xndgl] [599_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0008' from sub-workflow 'CallGenome'
[2026-06-05T14:00:09.676185Z] [nf-50d01d8e710f15ed91c1f097c9359cfb-ab327-xndgl] [599_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0008] Task initiated on local node
[2026-06-05T14:00:09.887778Z] [nf-50d01d8e710f15ed91c1f097c9359cfb-ab327-xndgl] [599_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0008' launched from sub-workflow 'CallGenome'
[2026-06-05T14:00:09.889158Z] [nf-50d01d8e710f15ed91c1f097c9359cfb-ab327-xndgl] [599_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0007' from sub-workflow 'CallGenome'
[2026-06-05T14:00:09.894103Z] [nf-50d01d8e710f15ed91c1f097c9359cfb-ab327-xndgl] [599_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_010_chr11_0007] Task initiated on local node
[2026-06-05T14:00:10.155010Z] [nf-50d01d8e710f15ed91c1f097c9359cfb-ab327-xndgl] [599_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0005' launched from sub-workflow 'CallGenome'
[2026-06-05T14:00:10.156320Z] [nf-50d01d8e710f15ed91c1f097c9359cfb-ab327-xndgl] [599_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0003' from sub-workflow 'CallGenome'
[2026-06-05T14:00:10.159539Z] [nf-50d01d8e710f15ed91c1f097c9359cfb-ab327-xndgl] [599_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0011' launched from sub-workflow 'CallGenome'
[2026-06-05T14:00:10.160851Z] [nf-50d01d8e710f15ed91c1f097c9359cfb-ab327-xndgl] [599_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_011_chr12_0003] Task initiated on local node
[2026-06-05T14:00:10.161595Z] [nf-50d01d8e710f15ed91c1f097c9359cfb-ab327-xndgl] [599_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0010' from sub-workflow 'CallGenome'
[2026-06-05T14:00:10.164506Z] [nf-50d01d8e710f15ed91c1f097c9359cfb-ab327-xndgl] [599_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_011_chr12_0010] Task initiated on local node
[2026-06-05T14:00:10.193976Z] [nf-50d01d8e710f15ed91c1f097c9359cfb-ab327-xndgl] [599_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0009' launched from sub-workflow 'CallGenome'
[2026-06-05T14:00:10.195700Z] [nf-50d01d8e710f15ed91c1f097c9359cfb-ab327-xndgl] [599_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0001' from sub-workflow 'CallGenome'
[2026-06-05T14:00:10.196201Z] [nf-50d01d8e710f15ed91c1f097c9359cfb-ab327-xndgl] [599_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0009' launched from sub-workflow 'CallGenome'
[2026-06-05T14:00:10.197828Z] [nf-50d01d8e710f15ed91c1f097c9359cfb-ab327-xndgl] [599_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0009' from sub-workflow 'CallGenome'
[2026-06-05T14:00:10.202193Z] [nf-50d01d8e710f15ed91c1f097c9359cfb-ab327-xndgl] [599_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0009] Task initiated on local node
[2026-06-05T14:00:10.202524Z] [nf-50d01d8e710f15ed91c1f097c9359cfb-ab327-xndgl] [599_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_010_chr11_0001] Task initiated on local node
[2026-06-05T14:00:10.206592Z] [nf-50d01d8e710f15ed91c1f097c9359cfb-ab327-xndgl] [599_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0010' launched from sub-workflow 'CallGenome'
[2026-06-05T14:00:10.207598Z] [nf-50d01d8e710f15ed91c1f097c9359cfb-ab327-xndgl] [599_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0007' from sub-workflow 'CallGenome'
[2026-06-05T14:00:10.210842Z] [nf-50d01d8e710f15ed91c1f097c9359cfb-ab327-xndgl] [599_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0007] Task initiated on local node
[2026-06-05T14:00:10.272248Z] [nf-50d01d8e710f15ed91c1f097c9359cfb-ab327-xndgl] [599_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0009' launched from sub-workflow 'CallGenome'
[2026-06-05T14:00:10.273802Z] [nf-50d01d8e710f15ed91c1f097c9359cfb-ab327-xndgl] [599_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0003' from sub-workflow 'CallGenome'
[2026-06-05T14:00:10.277588Z] [nf-50d01d8e710f15ed91c1f097c9359cfb-ab327-xndgl] [599_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0003] Task initiated on local node
[2026-06-05T14:00:10.338933Z] [nf-50d01d8e710f15ed91c1f097c9359cfb-ab327-xndgl] [599_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0003' launched from sub-workflow 'CallGenome'
[2026-06-05T14:00:10.340390Z] [nf-50d01d8e710f15ed91c1f097c9359cfb-ab327-xndgl] [599_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0010' from sub-workflow 'CallGenome'
[2026-06-05T14:00:10.344198Z] [nf-50d01d8e710f15ed91c1f097c9359cfb-ab327-xndgl] [599_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_010_chr11_0010] Task initiated on local node
[2026-06-05T14:00:10.405192Z] [nf-50d01d8e710f15ed91c1f097c9359cfb-ab327-xndgl] [599_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0010' launched from sub-workflow 'CallGenome'
[2026-06-05T14:00:10.406327Z] [nf-50d01d8e710f15ed91c1f097c9359cfb-ab327-xndgl] [599_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0008' from sub-workflow 'CallGenome'
[2026-06-05T14:00:10.410303Z] [nf-50d01d8e710f15ed91c1f097c9359cfb-ab327-xndgl] [599_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_011_chr12_0008] Task initiated on local node
[2026-06-05T14:00:10.471653Z] [nf-50d01d8e710f15ed91c1f097c9359cfb-ab327-xndgl] [599_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0008' launched from sub-workflow 'CallGenome'
[2026-06-05T14:00:10.472833Z] [nf-50d01d8e710f15ed91c1f097c9359cfb-ab327-xndgl] [599_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0005' from sub-workflow 'CallGenome'
[2026-06-05T14:00:10.476705Z] [nf-50d01d8e710f15ed91c1f097c9359cfb-ab327-xndgl] [599_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0005] Task initiated on local node
[2026-06-05T14:00:10.538040Z] [nf-50d01d8e710f15ed91c1f097c9359cfb-ab327-xndgl] [599_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0005' launched from sub-workflow 'CallGenome'
[2026-06-05T14:00:10.539390Z] [nf-50d01d8e710f15ed91c1f097c9359cfb-ab327-xndgl] [599_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0009' from sub-workflow 'CallGenome'
[2026-06-05T14:00:10.543145Z] [nf-50d01d8e710f15ed91c1f097c9359cfb-ab327-xndgl] [599_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_010_chr11_0009] Task initiated on local node
[2026-06-05T14:00:10.604171Z] [nf-50d01d8e710f15ed91c1f097c9359cfb-ab327-xndgl] [599_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0009' launched from sub-workflow 'CallGenome'
[2026-06-05T14:00:10.605427Z] [nf-50d01d8e710f15ed91c1f097c9359cfb-ab327-xndgl] [599_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0006' from sub-workflow 'CallGenome'
[2026-06-05T14:00:10.609264Z] [nf-50d01d8e710f15ed91c1f097c9359cfb-ab327-xndgl] [599_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0006] Task initiated on local node
[2026-06-05T14:00:11.272157Z] [nf-50d01d8e710f15ed91c1f097c9359cfb-ab327-xndgl] [599_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0006' launched from sub-workflow 'CallGenome'
[2026-06-05T14:00:11.272333Z] [nf-50d01d8e710f15ed91c1f097c9359cfb-ab327-xndgl] [599_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0003' launched from sub-workflow 'CallGenome'
[2026-06-05T14:00:11.273354Z] [nf-50d01d8e710f15ed91c1f097c9359cfb-ab327-xndgl] [599_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0003' from sub-workflow 'CallGenome'
[2026-06-05T14:00:11.273937Z] [nf-50d01d8e710f15ed91c1f097c9359cfb-ab327-xndgl] [599_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0011' from sub-workflow 'CallGenome'
[2026-06-05T14:00:11.274605Z] [nf-50d01d8e710f15ed91c1f097c9359cfb-ab327-xndgl] [599_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0007' launched from sub-workflow 'CallGenome'
[2026-06-05T14:00:11.279004Z] [nf-50d01d8e710f15ed91c1f097c9359cfb-ab327-xndgl] [599_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_011_chr12_0003] Task initiated on local node
[2026-06-05T14:00:11.280681Z] [nf-50d01d8e710f15ed91c1f097c9359cfb-ab327-xndgl] [599_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_011_chr12_0011] Task initiated on local node
[2026-06-05T14:00:11.280790Z] [nf-50d01d8e710f15ed91c1f097c9359cfb-ab327-xndgl] [599_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0007' from sub-workflow 'CallGenome'
[2026-06-05T14:00:11.283859Z] [nf-50d01d8e710f15ed91c1f097c9359cfb-ab327-xndgl] [599_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_010_chr11_0007] Task initiated on local node
[2026-06-05T14:00:11.313345Z] [nf-50d01d8e710f15ed91c1f097c9359cfb-ab327-xndgl] [599_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0000' launched from sub-workflow 'CallGenome'
[2026-06-05T14:00:11.314454Z] [nf-50d01d8e710f15ed91c1f097c9359cfb-ab327-xndgl] [599_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0000' from sub-workflow 'CallGenome'
[2026-06-05T14:00:11.314793Z] [nf-50d01d8e710f15ed91c1f097c9359cfb-ab327-xndgl] [599_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0003' launched from sub-workflow 'CallGenome'
[2026-06-05T14:00:11.317369Z] [nf-50d01d8e710f15ed91c1f097c9359cfb-ab327-xndgl] [599_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0002' from sub-workflow 'CallGenome'
[2026-06-05T14:00:11.318367Z] [nf-50d01d8e710f15ed91c1f097c9359cfb-ab327-xndgl] [599_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_011_chr12_0000] Task initiated on local node
[2026-06-05T14:00:11.320645Z] [nf-50d01d8e710f15ed91c1f097c9359cfb-ab327-xndgl] [599_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_011_chr12_0002] Task initiated on local node
[2026-06-05T14:00:11.321485Z] [nf-50d01d8e710f15ed91c1f097c9359cfb-ab327-xndgl] [599_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0007' launched from sub-workflow 'CallGenome'
[2026-06-05T14:00:11.322104Z] [nf-50d01d8e710f15ed91c1f097c9359cfb-ab327-xndgl] [599_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0004' from sub-workflow 'CallGenome'
[2026-06-05T14:00:11.325468Z] [nf-50d01d8e710f15ed91c1f097c9359cfb-ab327-xndgl] [599_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_010_chr11_0004] Task initiated on local node
[2026-06-05T14:00:11.354332Z] [nf-50d01d8e710f15ed91c1f097c9359cfb-ab327-xndgl] [599_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0011' launched from sub-workflow 'CallGenome'
[2026-06-05T14:00:11.354460Z] [nf-50d01d8e710f15ed91c1f097c9359cfb-ab327-xndgl] [599_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0000' launched from sub-workflow 'CallGenome'
[2026-06-05T14:00:11.355232Z] [nf-50d01d8e710f15ed91c1f097c9359cfb-ab327-xndgl] [599_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0001' from sub-workflow 'CallGenome'
[2026-06-05T14:00:11.355581Z] [nf-50d01d8e710f15ed91c1f097c9359cfb-ab327-xndgl] [599_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0007' from sub-workflow 'CallGenome'
[2026-06-05T14:00:11.360211Z] [nf-50d01d8e710f15ed91c1f097c9359cfb-ab327-xndgl] [599_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0001] Task initiated on local node
[2026-06-05T14:00:11.360995Z] [nf-50d01d8e710f15ed91c1f097c9359cfb-ab327-xndgl] [599_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_011_chr12_0007] Task initiated on local node
[2026-06-05T14:00:11.420307Z] [nf-50d01d8e710f15ed91c1f097c9359cfb-ab327-xndgl] [599_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0001' launched from sub-workflow 'CallGenome'
[2026-06-05T14:00:11.421154Z] [nf-50d01d8e710f15ed91c1f097c9359cfb-ab327-xndgl] [599_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0002' from sub-workflow 'CallGenome'
[2026-06-05T14:00:11.424427Z] [nf-50d01d8e710f15ed91c1f097c9359cfb-ab327-xndgl] [599_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_010_chr11_0002] Task initiated on local node
[2026-06-05T14:00:11.485914Z] [nf-50d01d8e710f15ed91c1f097c9359cfb-ab327-xndgl] [599_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0002' launched from sub-workflow 'CallGenome'
[2026-06-05T14:00:11.486796Z] [nf-50d01d8e710f15ed91c1f097c9359cfb-ab327-xndgl] [599_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0002' from sub-workflow 'CallGenome'
[2026-06-05T14:00:11.490602Z] [nf-50d01d8e710f15ed91c1f097c9359cfb-ab327-xndgl] [599_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0002] Task initiated on local node
[2026-06-05T14:00:11.551772Z] [nf-50d01d8e710f15ed91c1f097c9359cfb-ab327-xndgl] [599_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0002' launched from sub-workflow 'CallGenome'
[2026-06-05T14:00:11.552565Z] [nf-50d01d8e710f15ed91c1f097c9359cfb-ab327-xndgl] [599_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0011' from sub-workflow 'CallGenome'
[2026-06-05T14:00:11.556154Z] [nf-50d01d8e710f15ed91c1f097c9359cfb-ab327-xndgl] [599_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0011] Task initiated on local node
[2026-06-05T14:00:11.617346Z] [nf-50d01d8e710f15ed91c1f097c9359cfb-ab327-xndgl] [599_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0011' launched from sub-workflow 'CallGenome'
[2026-06-05T14:00:11.618212Z] [nf-50d01d8e710f15ed91c1f097c9359cfb-ab327-xndgl] [599_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0004' from sub-workflow 'CallGenome'
[2026-06-05T14:00:11.622102Z] [nf-50d01d8e710f15ed91c1f097c9359cfb-ab327-xndgl] [599_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_011_chr12_0004] Task initiated on local node
[2026-06-05T14:00:11.733562Z] [nf-50d01d8e710f15ed91c1f097c9359cfb-ab327-xndgl] [599_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0007' launched from sub-workflow 'CallGenome'
[2026-06-05T14:00:11.734410Z] [nf-50d01d8e710f15ed91c1f097c9359cfb-ab327-xndgl] [599_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0003' from sub-workflow 'CallGenome'
[2026-06-05T14:00:11.738363Z] [nf-50d01d8e710f15ed91c1f097c9359cfb-ab327-xndgl] [599_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_010_chr11_0003] Task initiated on local node
[2026-06-05T14:00:12.401763Z] [nf-50d01d8e710f15ed91c1f097c9359cfb-ab327-xndgl] [599_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0001' launched from sub-workflow 'CallGenome'
[2026-06-05T14:00:12.402605Z] [nf-50d01d8e710f15ed91c1f097c9359cfb-ab327-xndgl] [599_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0009' from sub-workflow 'CallGenome'
[2026-06-05T14:00:12.406346Z] [nf-50d01d8e710f15ed91c1f097c9359cfb-ab327-xndgl] [599_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_011_chr12_0009] Task initiated on local node
[2026-06-05T14:00:12.567691Z] [nf-50d01d8e710f15ed91c1f097c9359cfb-ab327-xndgl] [599_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0004' launched from sub-workflow 'CallGenome'
[2026-06-05T14:00:12.568547Z] [nf-50d01d8e710f15ed91c1f097c9359cfb-ab327-xndgl] [599_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0000' from sub-workflow 'CallGenome'
[2026-06-05T14:00:12.573003Z] [nf-50d01d8e710f15ed91c1f097c9359cfb-ab327-xndgl] [599_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_010_chr11_0000] Task initiated on local node
[2026-06-05T14:00:12.576925Z] [nf-50d01d8e710f15ed91c1f097c9359cfb-ab327-xndgl] [599_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0010' launched from sub-workflow 'CallGenome'
[2026-06-05T14:00:12.577660Z] [nf-50d01d8e710f15ed91c1f097c9359cfb-ab327-xndgl] [599_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0011' from sub-workflow 'CallGenome'
[2026-06-05T14:00:12.581327Z] [nf-50d01d8e710f15ed91c1f097c9359cfb-ab327-xndgl] [599_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_011_chr12_0011] Task initiated on local node
[2026-06-05T14:00:12.642220Z] [nf-50d01d8e710f15ed91c1f097c9359cfb-ab327-xndgl] [599_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0011' launched from sub-workflow 'CallGenome'
[2026-06-05T14:00:12.643068Z] [nf-50d01d8e710f15ed91c1f097c9359cfb-ab327-xndgl] [599_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0005' from sub-workflow 'CallGenome'
[2026-06-05T14:00:12.646920Z] [nf-50d01d8e710f15ed91c1f097c9359cfb-ab327-xndgl] [599_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_010_chr11_0005] Task initiated on local node
[2026-06-05T14:00:12.651639Z] [nf-50d01d8e710f15ed91c1f097c9359cfb-ab327-xndgl] [599_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0008' launched from sub-workflow 'CallGenome'
[2026-06-05T14:00:12.652262Z] [nf-50d01d8e710f15ed91c1f097c9359cfb-ab327-xndgl] [599_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0003' from sub-workflow 'CallGenome'
[2026-06-05T14:00:12.655637Z] [nf-50d01d8e710f15ed91c1f097c9359cfb-ab327-xndgl] [599_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0003] Task initiated on local node
[2026-06-05T14:00:12.716787Z] [nf-50d01d8e710f15ed91c1f097c9359cfb-ab327-xndgl] [599_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0003' launched from sub-workflow 'CallGenome'
[2026-06-05T14:00:12.717654Z] [nf-50d01d8e710f15ed91c1f097c9359cfb-ab327-xndgl] [599_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0006' from sub-workflow 'CallGenome'
[2026-06-05T14:00:12.721033Z] [nf-50d01d8e710f15ed91c1f097c9359cfb-ab327-xndgl] [599_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0006] Task initiated on local node
[2026-06-05T14:00:12.782407Z] [nf-50d01d8e710f15ed91c1f097c9359cfb-ab327-xndgl] [599_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0006' launched from sub-workflow 'CallGenome'
[2026-06-05T14:00:12.782525Z] [nf-50d01d8e710f15ed91c1f097c9359cfb-ab327-xndgl] [599_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0007' launched from sub-workflow 'CallGenome'
[2026-06-05T14:00:12.783257Z] [nf-50d01d8e710f15ed91c1f097c9359cfb-ab327-xndgl] [599_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0011' from sub-workflow 'CallGenome'
[2026-06-05T14:00:12.783632Z] [nf-50d01d8e710f15ed91c1f097c9359cfb-ab327-xndgl] [599_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0001' from sub-workflow 'CallGenome'
[2026-06-05T14:00:12.787567Z] [nf-50d01d8e710f15ed91c1f097c9359cfb-ab327-xndgl] [599_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_010_chr11_0001] Task initiated on local node
[2026-06-05T14:00:12.788716Z] [nf-50d01d8e710f15ed91c1f097c9359cfb-ab327-xndgl] [599_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_010_chr11_0011] Task initiated on local node
[2026-06-05T14:00:12.849071Z] [nf-50d01d8e710f15ed91c1f097c9359cfb-ab327-xndgl] [599_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0001' launched from sub-workflow 'CallGenome'
[2026-06-05T14:00:12.849168Z] [nf-50d01d8e710f15ed91c1f097c9359cfb-ab327-xndgl] [599_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0003' launched from sub-workflow 'CallGenome'
[2026-06-05T14:00:12.849887Z] [nf-50d01d8e710f15ed91c1f097c9359cfb-ab327-xndgl] [599_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0007' from sub-workflow 'CallGenome'
[2026-06-05T14:00:12.850257Z] [nf-50d01d8e710f15ed91c1f097c9359cfb-ab327-xndgl] [599_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0000' from sub-workflow 'CallGenome'
[2026-06-05T14:00:12.854599Z] [nf-50d01d8e710f15ed91c1f097c9359cfb-ab327-xndgl] [599_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_011_chr12_0007] Task initiated on local node
[2026-06-05T14:00:12.855922Z] [nf-50d01d8e710f15ed91c1f097c9359cfb-ab327-xndgl] [599_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0000] Task initiated on local node
[2026-06-05T14:00:12.917028Z] [nf-50d01d8e710f15ed91c1f097c9359cfb-ab327-xndgl] [599_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0007' launched from sub-workflow 'CallGenome'
[2026-06-05T14:00:12.917136Z] [nf-50d01d8e710f15ed91c1f097c9359cfb-ab327-xndgl] [599_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0000' launched from sub-workflow 'CallGenome'
[2026-06-05T14:00:12.917874Z] [nf-50d01d8e710f15ed91c1f097c9359cfb-ab327-xndgl] [599_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0008' from sub-workflow 'CallGenome'
[2026-06-05T14:00:12.918269Z] [nf-50d01d8e710f15ed91c1f097c9359cfb-ab327-xndgl] [599_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0001' from sub-workflow 'CallGenome'
[2026-06-05T14:00:12.922285Z] [nf-50d01d8e710f15ed91c1f097c9359cfb-ab327-xndgl] [599_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0008] Task initiated on local node
[2026-06-05T14:00:12.923370Z] [nf-50d01d8e710f15ed91c1f097c9359cfb-ab327-xndgl] [599_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_011_chr12_0001] Task initiated on local node
[2026-06-05T14:00:12.983524Z] [nf-50d01d8e710f15ed91c1f097c9359cfb-ab327-xndgl] [599_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0008' launched from sub-workflow 'CallGenome'
[2026-06-05T14:00:12.984295Z] [nf-50d01d8e710f15ed91c1f097c9359cfb-ab327-xndgl] [599_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0004' from sub-workflow 'CallGenome'
[2026-06-05T14:00:12.987481Z] [nf-50d01d8e710f15ed91c1f097c9359cfb-ab327-xndgl] [599_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0004] Task initiated on local node
[2026-06-05T14:00:13.049054Z] [nf-50d01d8e710f15ed91c1f097c9359cfb-ab327-xndgl] [599_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0004' launched from sub-workflow 'CallGenome'
[2026-06-05T14:00:13.049806Z] [nf-50d01d8e710f15ed91c1f097c9359cfb-ab327-xndgl] [599_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0005' from sub-workflow 'CallGenome'
[2026-06-05T14:00:13.053423Z] [nf-50d01d8e710f15ed91c1f097c9359cfb-ab327-xndgl] [599_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_011_chr12_0005] Task initiated on local node
[2026-06-05T14:00:13.114807Z] [nf-50d01d8e710f15ed91c1f097c9359cfb-ab327-xndgl] [599_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0005' launched from sub-workflow 'CallGenome'
[2026-06-05T14:00:13.115587Z] [nf-50d01d8e710f15ed91c1f097c9359cfb-ab327-xndgl] [599_1] [TaskManager] Launching command task: 'CallGenome+fixVcfHeader_chromId_009_chr10_0000' from sub-workflow 'CallGenome'
[2026-06-05T14:00:13.118962Z] [nf-50d01d8e710f15ed91c1f097c9359cfb-ab327-xndgl] [599_1] [TaskRunner:CallGenome+fixVcfHeader_chromId_009_chr10_0000] Task initiated on local node
[2026-06-05T14:00:13.180285Z] [nf-50d01d8e710f15ed91c1f097c9359cfb-ab327-xndgl] [599_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0002' launched from sub-workflow 'CallGenome'
[2026-06-05T14:00:13.180394Z] [nf-50d01d8e710f15ed91c1f097c9359cfb-ab327-xndgl] [599_1] [TaskManager] Completed command task: 'CallGenome+fixVcfHeader_chromId_009_chr10_0000' launched from sub-workflow 'CallGenome'
[2026-06-05T14:00:13.181041Z] [nf-50d01d8e710f15ed91c1f097c9359cfb-ab327-xndgl] [599_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0002' from sub-workflow 'CallGenome'
[2026-06-05T14:00:13.181635Z] [nf-50d01d8e710f15ed91c1f097c9359cfb-ab327-xndgl] [599_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0006' from sub-workflow 'CallGenome'
[2026-06-05T14:00:13.185697Z] [nf-50d01d8e710f15ed91c1f097c9359cfb-ab327-xndgl] [599_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_011_chr12_0002] Task initiated on local node
[2026-06-05T14:00:13.186992Z] [nf-50d01d8e710f15ed91c1f097c9359cfb-ab327-xndgl] [599_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_011_chr12_0006] Task initiated on local node
[2026-06-05T14:00:13.246855Z] [nf-50d01d8e710f15ed91c1f097c9359cfb-ab327-xndgl] [599_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0002' launched from sub-workflow 'CallGenome'
[2026-06-05T14:00:13.246979Z] [nf-50d01d8e710f15ed91c1f097c9359cfb-ab327-xndgl] [599_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0009' launched from sub-workflow 'CallGenome'
[2026-06-05T14:00:13.247633Z] [nf-50d01d8e710f15ed91c1f097c9359cfb-ab327-xndgl] [599_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0009' from sub-workflow 'CallGenome'
[2026-06-05T14:00:13.247980Z] [nf-50d01d8e710f15ed91c1f097c9359cfb-ab327-xndgl] [599_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0000' from sub-workflow 'CallGenome'
[2026-06-05T14:00:13.252514Z] [nf-50d01d8e710f15ed91c1f097c9359cfb-ab327-xndgl] [599_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0000] Task initiated on local node
[2026-06-05T14:00:13.252721Z] [nf-50d01d8e710f15ed91c1f097c9359cfb-ab327-xndgl] [599_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_011_chr12_0009] Task initiated on local node
[2026-06-05T14:00:13.313360Z] [nf-50d01d8e710f15ed91c1f097c9359cfb-ab327-xndgl] [599_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0009' launched from sub-workflow 'CallGenome'
[2026-06-05T14:00:13.313475Z] [nf-50d01d8e710f15ed91c1f097c9359cfb-ab327-xndgl] [599_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0000' launched from sub-workflow 'CallGenome'
[2026-06-05T14:00:13.314144Z] [nf-50d01d8e710f15ed91c1f097c9359cfb-ab327-xndgl] [599_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0007' from sub-workflow 'CallGenome'
[2026-06-05T14:00:13.314688Z] [nf-50d01d8e710f15ed91c1f097c9359cfb-ab327-xndgl] [599_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0005' from sub-workflow 'CallGenome'
[2026-06-05T14:00:13.318337Z] [nf-50d01d8e710f15ed91c1f097c9359cfb-ab327-xndgl] [599_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0007] Task initiated on local node
[2026-06-05T14:00:13.319528Z] [nf-50d01d8e710f15ed91c1f097c9359cfb-ab327-xndgl] [599_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0005] Task initiated on local node
[2026-06-05T14:00:13.379587Z] [nf-50d01d8e710f15ed91c1f097c9359cfb-ab327-xndgl] [599_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0007' launched from sub-workflow 'CallGenome'
[2026-06-05T14:00:13.379680Z] [nf-50d01d8e710f15ed91c1f097c9359cfb-ab327-xndgl] [599_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0005' launched from sub-workflow 'CallGenome'
[2026-06-05T14:00:13.380229Z] [nf-50d01d8e710f15ed91c1f097c9359cfb-ab327-xndgl] [599_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0001' from sub-workflow 'CallGenome'
[2026-06-05T14:00:13.380582Z] [nf-50d01d8e710f15ed91c1f097c9359cfb-ab327-xndgl] [599_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0004' from sub-workflow 'CallGenome'
[2026-06-05T14:00:13.384201Z] [nf-50d01d8e710f15ed91c1f097c9359cfb-ab327-xndgl] [599_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0001] Task initiated on local node
[2026-06-05T14:00:13.418093Z] [nf-50d01d8e710f15ed91c1f097c9359cfb-ab327-xndgl] [599_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_010_chr11_0004] Task initiated on local node
[2026-06-05T14:00:13.445583Z] [nf-50d01d8e710f15ed91c1f097c9359cfb-ab327-xndgl] [599_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0001' launched from sub-workflow 'CallGenome'
[2026-06-05T14:00:13.445693Z] [nf-50d01d8e710f15ed91c1f097c9359cfb-ab327-xndgl] [599_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0004' launched from sub-workflow 'CallGenome'
[2026-06-05T14:00:13.446325Z] [nf-50d01d8e710f15ed91c1f097c9359cfb-ab327-xndgl] [599_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0010' from sub-workflow 'CallGenome'
[2026-06-05T14:00:13.446734Z] [nf-50d01d8e710f15ed91c1f097c9359cfb-ab327-xndgl] [599_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0006' from sub-workflow 'CallGenome'
[2026-06-05T14:00:13.450862Z] [nf-50d01d8e710f15ed91c1f097c9359cfb-ab327-xndgl] [599_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_010_chr11_0010] Task initiated on local node
[2026-06-05T14:00:13.452194Z] [nf-50d01d8e710f15ed91c1f097c9359cfb-ab327-xndgl] [599_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_010_chr11_0006] Task initiated on local node
[2026-06-05T14:00:13.511933Z] [nf-50d01d8e710f15ed91c1f097c9359cfb-ab327-xndgl] [599_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0010' launched from sub-workflow 'CallGenome'
[2026-06-05T14:00:13.512668Z] [nf-50d01d8e710f15ed91c1f097c9359cfb-ab327-xndgl] [599_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0010' from sub-workflow 'CallGenome'
[2026-06-05T14:00:13.516279Z] [nf-50d01d8e710f15ed91c1f097c9359cfb-ab327-xndgl] [599_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0010] Task initiated on local node
[2026-06-05T14:00:13.577824Z] [nf-50d01d8e710f15ed91c1f097c9359cfb-ab327-xndgl] [599_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0010' launched from sub-workflow 'CallGenome'
[2026-06-05T14:00:13.578482Z] [nf-50d01d8e710f15ed91c1f097c9359cfb-ab327-xndgl] [599_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0003' from sub-workflow 'CallGenome'
[2026-06-05T14:00:13.581790Z] [nf-50d01d8e710f15ed91c1f097c9359cfb-ab327-xndgl] [599_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_010_chr11_0003] Task initiated on local node
[2026-06-05T14:00:13.643343Z] [nf-50d01d8e710f15ed91c1f097c9359cfb-ab327-xndgl] [599_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0003' launched from sub-workflow 'CallGenome'
[2026-06-05T14:00:13.643974Z] [nf-50d01d8e710f15ed91c1f097c9359cfb-ab327-xndgl] [599_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0002' from sub-workflow 'CallGenome'
[2026-06-05T14:00:13.647402Z] [nf-50d01d8e710f15ed91c1f097c9359cfb-ab327-xndgl] [599_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0002] Task initiated on local node
[2026-06-05T14:00:13.709081Z] [nf-50d01d8e710f15ed91c1f097c9359cfb-ab327-xndgl] [599_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0002' launched from sub-workflow 'CallGenome'
[2026-06-05T14:00:13.709784Z] [nf-50d01d8e710f15ed91c1f097c9359cfb-ab327-xndgl] [599_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0008' from sub-workflow 'CallGenome'
[2026-06-05T14:00:13.713035Z] [nf-50d01d8e710f15ed91c1f097c9359cfb-ab327-xndgl] [599_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_010_chr11_0008] Task initiated on local node
[2026-06-05T14:00:14.426972Z] [nf-50d01d8e710f15ed91c1f097c9359cfb-ab327-xndgl] [599_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0011' launched from sub-workflow 'CallGenome'
[2026-06-05T14:00:14.427625Z] [nf-50d01d8e710f15ed91c1f097c9359cfb-ab327-xndgl] [599_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0011' from sub-workflow 'CallGenome'
[2026-06-05T14:00:14.431555Z] [nf-50d01d8e710f15ed91c1f097c9359cfb-ab327-xndgl] [599_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_010_chr11_0011] Task initiated on local node
[2026-06-05T14:00:14.492803Z] [nf-50d01d8e710f15ed91c1f097c9359cfb-ab327-xndgl] [599_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0011' launched from sub-workflow 'CallGenome'
[2026-06-05T14:00:14.607802Z] [nf-50d01d8e710f15ed91c1f097c9359cfb-ab327-xndgl] [599_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0006' launched from sub-workflow 'CallGenome'
[2026-06-05T14:00:14.608445Z] [nf-50d01d8e710f15ed91c1f097c9359cfb-ab327-xndgl] [599_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0006' from sub-workflow 'CallGenome'
[2026-06-05T14:00:14.611667Z] [nf-50d01d8e710f15ed91c1f097c9359cfb-ab327-xndgl] [599_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_011_chr12_0006] Task initiated on local node
[2026-06-05T14:00:14.673278Z] [nf-50d01d8e710f15ed91c1f097c9359cfb-ab327-xndgl] [599_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0006' launched from sub-workflow 'CallGenome'
[2026-06-05T14:00:14.838107Z] [nf-50d01d8e710f15ed91c1f097c9359cfb-ab327-xndgl] [599_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0001' launched from sub-workflow 'CallGenome'
[2026-06-05T14:00:14.838811Z] [nf-50d01d8e710f15ed91c1f097c9359cfb-ab327-xndgl] [599_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0001' from sub-workflow 'CallGenome'
[2026-06-05T14:00:14.842215Z] [nf-50d01d8e710f15ed91c1f097c9359cfb-ab327-xndgl] [599_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_011_chr12_0001] Task initiated on local node
[2026-06-05T14:00:14.903642Z] [nf-50d01d8e710f15ed91c1f097c9359cfb-ab327-xndgl] [599_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0001' launched from sub-workflow 'CallGenome'
[2026-06-05T14:00:14.967983Z] [nf-50d01d8e710f15ed91c1f097c9359cfb-ab327-xndgl] [599_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0008' launched from sub-workflow 'CallGenome'
[2026-06-05T14:00:14.968659Z] [nf-50d01d8e710f15ed91c1f097c9359cfb-ab327-xndgl] [599_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0008' from sub-workflow 'CallGenome'
[2026-06-05T14:00:14.972454Z] [nf-50d01d8e710f15ed91c1f097c9359cfb-ab327-xndgl] [599_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_010_chr11_0008] Task initiated on local node
[2026-06-05T14:00:15.033749Z] [nf-50d01d8e710f15ed91c1f097c9359cfb-ab327-xndgl] [599_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0008' launched from sub-workflow 'CallGenome'
[2026-06-05T14:00:15.249043Z] [nf-50d01d8e710f15ed91c1f097c9359cfb-ab327-xndgl] [599_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0004' launched from sub-workflow 'CallGenome'
[2026-06-05T14:00:15.249660Z] [nf-50d01d8e710f15ed91c1f097c9359cfb-ab327-xndgl] [599_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0004' from sub-workflow 'CallGenome'
[2026-06-05T14:00:15.253114Z] [nf-50d01d8e710f15ed91c1f097c9359cfb-ab327-xndgl] [599_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_011_chr12_0004] Task initiated on local node
[2026-06-05T14:00:15.314622Z] [nf-50d01d8e710f15ed91c1f097c9359cfb-ab327-xndgl] [599_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0004' launched from sub-workflow 'CallGenome'
[2026-06-05T14:00:15.730148Z] [nf-50d01d8e710f15ed91c1f097c9359cfb-ab327-xndgl] [599_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0000' launched from sub-workflow 'CallGenome'
[2026-06-05T14:00:15.730799Z] [nf-50d01d8e710f15ed91c1f097c9359cfb-ab327-xndgl] [599_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0000' from sub-workflow 'CallGenome'
[2026-06-05T14:00:15.734581Z] [nf-50d01d8e710f15ed91c1f097c9359cfb-ab327-xndgl] [599_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_010_chr11_0000] Task initiated on local node
[2026-06-05T14:00:15.796065Z] [nf-50d01d8e710f15ed91c1f097c9359cfb-ab327-xndgl] [599_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0000' launched from sub-workflow 'CallGenome'
[2026-06-05T14:00:15.860482Z] [nf-50d01d8e710f15ed91c1f097c9359cfb-ab327-xndgl] [599_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0005' launched from sub-workflow 'CallGenome'
[2026-06-05T14:00:15.861040Z] [nf-50d01d8e710f15ed91c1f097c9359cfb-ab327-xndgl] [599_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0005' from sub-workflow 'CallGenome'
[2026-06-05T14:00:15.864388Z] [nf-50d01d8e710f15ed91c1f097c9359cfb-ab327-xndgl] [599_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_010_chr11_0005] Task initiated on local node
[2026-06-05T14:00:15.925724Z] [nf-50d01d8e710f15ed91c1f097c9359cfb-ab327-xndgl] [599_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0005' launched from sub-workflow 'CallGenome'
[2026-06-05T14:00:16.290982Z] [nf-50d01d8e710f15ed91c1f097c9359cfb-ab327-xndgl] [599_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0006' launched from sub-workflow 'CallGenome'
[2026-06-05T14:00:16.291567Z] [nf-50d01d8e710f15ed91c1f097c9359cfb-ab327-xndgl] [599_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0006' from sub-workflow 'CallGenome'
[2026-06-05T14:00:16.294764Z] [nf-50d01d8e710f15ed91c1f097c9359cfb-ab327-xndgl] [599_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_010_chr11_0006] Task initiated on local node
[2026-06-05T14:00:16.356166Z] [nf-50d01d8e710f15ed91c1f097c9359cfb-ab327-xndgl] [599_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0006' launched from sub-workflow 'CallGenome'
[2026-06-05T14:00:16.356507Z] [nf-50d01d8e710f15ed91c1f097c9359cfb-ab327-xndgl] [599_1] [TaskManager] Completed command task: 'CallGenome+completedAllGenomeSegments' launched from sub-workflow 'CallGenome'
[2026-06-05T14:00:16.356680Z] [nf-50d01d8e710f15ed91c1f097c9359cfb-ab327-xndgl] [599_1] [TaskManager] Launching command task: 'CallGenome+SNV_concat_vcf' from sub-workflow 'CallGenome'
[2026-06-05T14:00:16.357000Z] [nf-50d01d8e710f15ed91c1f097c9359cfb-ab327-xndgl] [599_1] [TaskManager] Launching command task: 'CallGenome+Indel_concat_vcf' from sub-workflow 'CallGenome'
[2026-06-05T14:00:16.357923Z] [nf-50d01d8e710f15ed91c1f097c9359cfb-ab327-xndgl] [599_1] [TaskManager] Launching command task: 'CallGenome+mergeRunStats' from sub-workflow 'CallGenome'
[2026-06-05T14:00:16.363623Z] [nf-50d01d8e710f15ed91c1f097c9359cfb-ab327-xndgl] [599_1] [TaskRunner:CallGenome+SNV_concat_vcf] Task initiated on local node
[2026-06-05T14:00:16.364297Z] [nf-50d01d8e710f15ed91c1f097c9359cfb-ab327-xndgl] [599_1] [TaskRunner:CallGenome+Indel_concat_vcf] Task initiated on local node
[2026-06-05T14:00:16.364706Z] [nf-50d01d8e710f15ed91c1f097c9359cfb-ab327-xndgl] [599_1] [TaskRunner:CallGenome+mergeRunStats] Task initiated on local node
[2026-06-05T14:00:16.392348Z] [nf-50d01d8e710f15ed91c1f097c9359cfb-ab327-xndgl] [599_1] [TaskManager] Completed command task: 'CallGenome+Indel_concat_vcf' launched from sub-workflow 'CallGenome'
[2026-06-05T14:00:16.392434Z] [nf-50d01d8e710f15ed91c1f097c9359cfb-ab327-xndgl] [599_1] [TaskManager] Completed command task: 'CallGenome+SNV_concat_vcf' launched from sub-workflow 'CallGenome'
[2026-06-05T14:00:16.392675Z] [nf-50d01d8e710f15ed91c1f097c9359cfb-ab327-xndgl] [599_1] [TaskManager] Launching command task: 'CallGenome+Indel_index_vcf' from sub-workflow 'CallGenome'
[2026-06-05T14:00:16.393228Z] [nf-50d01d8e710f15ed91c1f097c9359cfb-ab327-xndgl] [599_1] [TaskManager] Launching command task: 'CallGenome+SNV_index_vcf' from sub-workflow 'CallGenome'
[2026-06-05T14:00:16.396395Z] [nf-50d01d8e710f15ed91c1f097c9359cfb-ab327-xndgl] [599_1] [TaskManager] Completed command task: 'CallGenome+mergeRunStats' launched from sub-workflow 'CallGenome'
[2026-06-05T14:00:16.396709Z] [nf-50d01d8e710f15ed91c1f097c9359cfb-ab327-xndgl] [599_1] [TaskRunner:CallGenome+SNV_index_vcf] Task initiated on local node
[2026-06-05T14:00:16.423537Z] [nf-50d01d8e710f15ed91c1f097c9359cfb-ab327-xndgl] [599_1] [TaskRunner:CallGenome+Indel_index_vcf] Task initiated on local node
[2026-06-05T14:00:16.428159Z] [nf-50d01d8e710f15ed91c1f097c9359cfb-ab327-xndgl] [599_1] [TaskManager] Completed command task: 'CallGenome+SNV_index_vcf' launched from sub-workflow 'CallGenome'
[2026-06-05T14:00:16.428226Z] [nf-50d01d8e710f15ed91c1f097c9359cfb-ab327-xndgl] [599_1] [TaskManager] Completed command task: 'CallGenome+Indel_index_vcf' launched from sub-workflow 'CallGenome'
[2026-06-05T14:00:16.428440Z] [nf-50d01d8e710f15ed91c1f097c9359cfb-ab327-xndgl] [599_1] [TaskManager] Launching command task: 'CallGenome+removeTmpDir' from sub-workflow 'CallGenome'
[2026-06-05T14:00:16.431135Z] [nf-50d01d8e710f15ed91c1f097c9359cfb-ab327-xndgl] [599_1] [TaskRunner:CallGenome+removeTmpDir] Task initiated on local node
[2026-06-05T14:00:16.460501Z] [nf-50d01d8e710f15ed91c1f097c9359cfb-ab327-xndgl] [599_1] [TaskManager] Completed command task: 'CallGenome+removeTmpDir' launched from sub-workflow 'CallGenome'
[2026-06-05T14:00:18.630393Z] [nf-50d01d8e710f15ed91c1f097c9359cfb-ab327-xndgl] [599_1] [TaskManager] Completed sub-workflow task: 'CallGenome' launched from master workflow
[2026-06-05T14:00:26.878322Z] [nf-50d01d8e710f15ed91c1f097c9359cfb-ab327-xndgl] [599_1] [WorkflowRunner] Strelka somatic workflow successfully completed.
[2026-06-05T14:00:26.878322Z] [nf-50d01d8e710f15ed91c1f097c9359cfb-ab327-xndgl] [599_1] [WorkflowRunner] 
[2026-06-05T14:00:26.878322Z] [nf-50d01d8e710f15ed91c1f097c9359cfb-ab327-xndgl] [599_1] [WorkflowRunner] 	workflow version: 2.9.10
[2026-06-05T14:00:26.878395Z] [nf-50d01d8e710f15ed91c1f097c9359cfb-ab327-xndgl] [599_1] [WorkflowRunner] 
[2026-06-05T14:00:26.878410Z] [nf-50d01d8e710f15ed91c1f097c9359cfb-ab327-xndgl] [599_1] [WorkflowRunner] Workflow successfully completed all tasks
[2026-06-05T14:00:26.878417Z] [nf-50d01d8e710f15ed91c1f097c9359cfb-ab327-xndgl] [599_1] [WorkflowRunner] Elapsed time for full workflow: 18 sec