Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/cb/1f3f5d48ef1b235d1c38bee4cab1ab/output/Reports/Adapter_Metrics.csv
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/0b/ee04bcff5b121391c5552c3fe75d00/HCC1395_BL.fastp.json
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/4c/f84457a21aa906d2a86c8a3c95aa99/Sig_18_Blood.md.metrics
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/6d/f56c194c586e4440bf2c6ff0812049/Sig_18_Blood/Sig_18_Blood.md/depth_stats.altera_v3_targets_noncoding_postQC_hg38.bed.tsv
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/77/a170f9787852f253579d1b9088aba7/output/Reports/Demultiplex_Detailed_Stats.csv
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/e7/c0e8d0dd5b747788b8cb1174576e44/HCC1395_tumor_xgen-exome-hyb-panel-v2_AND_altera_v3_probes_short_hg38_AND_cdx_spike_custom30off4x_hg38_AND_foresight_clarity_footprint.sentieon.hs_metrics
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/6d/f56c194c586e4440bf2c6ff0812049/Sig_18_Blood/Sig_18_Blood.md/total_base_counts.xgen-exome-hyb-panel-v2_AND_altera_v3_probes_short_hg38_AND_cdx_spike_custom30off4x_hg38_AND_foresight_clarity_footprint.bed.tsv
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/06/295f471a0a0535cd46010ed3a0ba5f/HCC1395_BL.sentieon.quality_by_cycle_metrics
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/6d/f56c194c586e4440bf2c6ff0812049/Sig_18_Blood/Sig_18_Blood.md/total_base_counts.altera_v3_targets_coding_postQC_hg38.bed.tsv
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/c4/918f7df06867c246448e911c8cda89/HCC1395_BL/HCC1395_BL.md/read_qc.foresight_clarity_targets_hg38.bed.tsv
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/e9/213d6a9a2c0ea9fe79578aa2d24aaf/HCC1395_tumor/HCC1395_tumor.md/saturation_qc.tsv
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/01/15ad96b7409a285238286991136ee1/Sig_18_tissue/Sig_18_tissue.md/read_qc.altera_v3_targets_coding_postQC_hg38.bed.tsv
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/e9/213d6a9a2c0ea9fe79578aa2d24aaf/HCC1395_tumor/HCC1395_tumor.md/reads_per_target.xgen-exome-hyb-panel-v2_AND_altera_v3_probes_short_hg38_AND_cdx_spike_custom30off4x_hg38_AND_foresight_clarity_footprint.bed.tsv
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/01/15ad96b7409a285238286991136ee1/Sig_18_tissue/Sig_18_tissue.md/depth_stats.xgen-exome-hyb-panel-v2-targets-hg38_AND_altera_v3_targets_postQC_hg38_AND_foresight_clarity.bed.tsv
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/c4/918f7df06867c246448e911c8cda89/HCC1395_BL/HCC1395_BL.md/reads_per_target.foresight_clarity_targets_hg38.bed.tsv
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/f5/8d5f9e97e91c33634ed2343c5b31a1/HCC1395_tumor.sentieon.quality_by_cycle_metrics
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/cb/1f3f5d48ef1b235d1c38bee4cab1ab/output/Reports/Quality_Metrics.csv
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/c4/918f7df06867c246448e911c8cda89/HCC1395_BL/HCC1395_BL.md/gc_bias_qc.FINAL_hotspot_list_07302025_hg38_sorted.bed.tsv
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/fe/6361504ab2227d9de1656800b41e59/output/Reports/Demultiplex_Tile_Stats.csv
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/d8/9a7e14e27042e576900f5c2db0d4ff/Sig_18_tissue_altera_v3_targets_postQC_hg38.sentieon.hs_metrics
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/77/a170f9787852f253579d1b9088aba7/output/Reports/Top_Unknown_Barcodes.csv
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/6f/ec080176bf81e3b2349061e1e2c87c/output/Reports/Demultiplex_Stats.csv
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/e9/213d6a9a2c0ea9fe79578aa2d24aaf/HCC1395_tumor/HCC1395_tumor.md/fragsize.fragsize.table
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/01/15ad96b7409a285238286991136ee1/Sig_18_tissue/Sig_18_tissue.md/read_qc.xgen-exome-hyb-panel-v2-targets-hg38_AND_altera_v3_targets_postQC_hg38_AND_foresight_clarity.bed.tsv
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/fb/26ac11510e7d5dcb565109598304fc/Sig_18_Blood_xgen-exome-hyb-panel-v2-targets-hg38_minus_altera_v3_targets_postQC_hg38.sentieon.hs_metrics
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/e9/213d6a9a2c0ea9fe79578aa2d24aaf/HCC1395_tumor/HCC1395_tumor.md/read_qc.altera_v3_targets_postQC_hg38.bed.tsv
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/96/5493e7706623b5b9061e2bda47b42e/Sig_18_Blood_altera_v3_targets_postQC_hg38.sentieon.hs_metrics
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/9b/711e81c4a6989a23e1519825af11ee/HCC1395_BL.fastp.json
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/6d/f56c194c586e4440bf2c6ff0812049/Sig_18_Blood/Sig_18_Blood.md/gc_bias_qc.xgen-exome-hyb-panel-v2_AND_altera_v3_probes_short_hg38_AND_cdx_spike_custom30off4x_hg38_AND_foresight_clarity_footprint.bed.tsv
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/6d/f56c194c586e4440bf2c6ff0812049/Sig_18_Blood/Sig_18_Blood.md/depth_stats.xgen-exome-hyb-panel-v2_AND_altera_v3_probes_short_hg38_AND_cdx_spike_custom30off4x_hg38_AND_foresight_clarity_footprint.bed.tsv
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/e9/213d6a9a2c0ea9fe79578aa2d24aaf/HCC1395_tumor/HCC1395_tumor.md/reads_per_target.xgen-exome-hyb-panel-v2-targets-hg38_AND_altera_v3_targets_postQC_hg38_AND_foresight_clarity.bed.tsv
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/01/15ad96b7409a285238286991136ee1/Sig_18_tissue/Sig_18_tissue.md/read_qc.altera_v3_targets_postQC_hg38.bed.tsv
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/e9/213d6a9a2c0ea9fe79578aa2d24aaf/HCC1395_tumor/HCC1395_tumor.md/reads_per_target.FINAL_hotspot_list_07302025_hg38_sorted.bed.tsv
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/c1/4acd7807cd810a8c648a96ee4c2110/HCC1395_tumor_foresight_clarity_targets_hg38.sentieon.hs_metrics
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/0e/cb052eb1b199967655db98e759fa29/output/Reports/Quality_Metrics.csv
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/01/15ad96b7409a285238286991136ee1/Sig_18_tissue/Sig_18_tissue.md/read_qc.foresight_clarity_targets_hg38.bed.tsv
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/6d/f56c194c586e4440bf2c6ff0812049/Sig_18_Blood/Sig_18_Blood.md/total_base_counts.altera_v3_targets_noncoding_postQC_hg38.bed.tsv
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/d1/8baba49f96d0fbbac127750a5b6684/output/Reports/Demultiplex_Detailed_Stats.csv
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/c4/918f7df06867c246448e911c8cda89/HCC1395_BL/HCC1395_BL_full_basic_stats.tsv
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/01/15ad96b7409a285238286991136ee1/Sig_18_tissue/Sig_18_tissue.md/total_base_counts.xgen-exome-hyb-panel-v2_AND_altera_v3_probes_short_hg38_AND_cdx_spike_custom30off4x_hg38_AND_foresight_clarity_footprint.bed.tsv
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/94/2738ba50d5bb5619d745e40654df9b/Sig_18_Blood.fastp.json
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/77/a170f9787852f253579d1b9088aba7/output/Reports/Quality_Tile_Metrics.csv
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/c4/918f7df06867c246448e911c8cda89/HCC1395_BL/HCC1395_BL.md/gc_bias_qc.xgen-exome-hyb-panel-v2-targets-hg38_minus_altera_v3_targets_postQC_hg38.bed.tsv
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/c4/918f7df06867c246448e911c8cda89/HCC1395_BL/HCC1395_BL.md/reads_per_target.altera_v3_targets_coding_postQC_hg38.bed.tsv
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/d9/55a8e7be8034c54e59b69c6cd49e7c/HCC1395_tumor.fastp.json
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/e5/7c03da3863c3954e50630360f667e2/output/Reports/fastq_list.csv
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/f5/8d5f9e97e91c33634ed2343c5b31a1/HCC1395_tumor.sentieon.quality_distribution_metrics
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/cb/1f3f5d48ef1b235d1c38bee4cab1ab/output/Reports/Index_Hopping_Counts.csv
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/e9/213d6a9a2c0ea9fe79578aa2d24aaf/HCC1395_tumor/HCC1395_tumor.md/read_qc.xgen-exome-hyb-panel-v2_AND_altera_v3_probes_short_hg38_AND_cdx_spike_custom30off4x_hg38_AND_foresight_clarity_footprint.bed.tsv
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/fe/6361504ab2227d9de1656800b41e59/output/Reports/Demultiplex_Stats.csv
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/c4/918f7df06867c246448e911c8cda89/HCC1395_BL/HCC1395_BL.md/total_base_counts.xgen-exome-hyb-panel-v2-targets-hg38_AND_altera_v3_targets_postQC_hg38_AND_foresight_clarity.bed.tsv
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/6d/f56c194c586e4440bf2c6ff0812049/Sig_18_Blood/Sig_18_Blood.md/total_base_counts.xgen-exome-hyb-panel-v2-targets-hg38_AND_altera_v3_targets_postQC_hg38_AND_foresight_clarity.bed.tsv
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/46/fb26f93276c6b35cf542925a342d8d/Sig_18_Blood.sentieon.quality_distribution_metrics
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/46/fb26f93276c6b35cf542925a342d8d/Sig_18_Blood.sentieon.quality_by_cycle_metrics
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/01/15ad96b7409a285238286991136ee1/Sig_18_tissue/Sig_18_tissue.md/full_bed.bed
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/6d/f56c194c586e4440bf2c6ff0812049/Sig_18_Blood/Sig_18_Blood.md/gc_bias_qc.altera_v3_targets_coding_postQC_hg38.bed.tsv
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/e9/213d6a9a2c0ea9fe79578aa2d24aaf/HCC1395_tumor/HCC1395_tumor.md/read_qc.foresight_clarity_targets_hg38.bed.tsv
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/c5/a9cbd2afeeaa4ff683b7a218ce8125/Sig_18_Blood.mosdepth.region.dist.txt
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/ff/d376d384ffc3e6e80bad349051b43d/Sig_18_Blood.fastp.json
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/e9/213d6a9a2c0ea9fe79578aa2d24aaf/HCC1395_tumor/HCC1395_tumor.md/reads_per_target.foresight_clarity_targets_hg38.bed.tsv
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/09/b8a8457c928cbed601e907a38b7e91/Sig_18_tissue_foresight_clarity_targets_hg38.sentieon.hs_metrics
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/06/295f471a0a0535cd46010ed3a0ba5f/HCC1395_BL.sentieon.quality_distribution_metrics
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/c4/918f7df06867c246448e911c8cda89/HCC1395_BL/HCC1395_BL_basic_stats.tsv
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/d1/8baba49f96d0fbbac127750a5b6684/output/Reports/Demultiplex_Stats.csv
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/82/d2362959e3d227d336c30ffeb16d2d/output/Reports/Index_Hopping_Counts.csv
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/fe/6361504ab2227d9de1656800b41e59/output/Reports/IndexMetricsOut.bin
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/fe/6361504ab2227d9de1656800b41e59/output/Reports/Quality_Tile_Metrics.csv
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/0a/69ea509821375c21c5ef8a68c659ef/HCC1395_tumor.fastp.json
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/6d/f56c194c586e4440bf2c6ff0812049/Sig_18_Blood/Sig_18_Blood.md/reads_per_target.foresight_clarity_targets_hg38.bed.tsv
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/01/15ad96b7409a285238286991136ee1/Sig_18_tissue/Sig_18_tissue.md/gc_bias_qc.xgen-exome-hyb-panel-v2-targets-hg38_AND_altera_v3_targets_postQC_hg38_AND_foresight_clarity.bed.tsv
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/6d/f56c194c586e4440bf2c6ff0812049/Sig_18_Blood/Sig_18_Blood.md/Sig_18_Blood.md.noise_summary.tsv
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/e9/213d6a9a2c0ea9fe79578aa2d24aaf/HCC1395_tumor/HCC1395_tumor.md/reads_per_target.altera_v3_targets_noncoding_postQC_hg38.bed.tsv
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/82/d2362959e3d227d336c30ffeb16d2d/output/Reports/Quality_Metrics.csv
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/6d/f56c194c586e4440bf2c6ff0812049/Sig_18_Blood/Sig_18_Blood.md/depth_stats.FINAL_hotspot_list_07302025_hg38_sorted.bed.tsv
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/01/15ad96b7409a285238286991136ee1/Sig_18_tissue/Sig_18_tissue.md/contamination.tsv
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/fe/6361504ab2227d9de1656800b41e59/output/Reports/RunInfo.xml
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/6f/ec080176bf81e3b2349061e1e2c87c/output/Reports/Top_Unknown_Barcodes.csv
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/0e/cb052eb1b199967655db98e759fa29/output/Reports/IndexMetricsOut.bin
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/82/d2362959e3d227d336c30ffeb16d2d/output/Reports/RunInfo.xml
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/6f/ec080176bf81e3b2349061e1e2c87c/output/Reports/SampleSheet.csv
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/01/15ad96b7409a285238286991136ee1/Sig_18_tissue/Sig_18_tissue.md/Sig_18_tissue.md.depth_hist.tsv
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/8f/903d1ad2cc0b6d3d594d280d2c2a39/Sig_18_tissue_xgen-exome-hyb-panel-v2_AND_altera_v3_probes_short_hg38_AND_cdx_spike_custom30off4x_hg38_AND_foresight_clarity_footprint.sentieon.hs_metrics
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/56/642a392ca013205e9aeb3b4ee11882/HCC1395_BL.fastp.json
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/e8/58a23329f8089c5159004e853652c6/HCC1395_tumor_xgen-exome-hyb-panel-v2-targets-hg38_AND_altera_v3_targets_postQC_hg38_AND_foresight_clarity.sentieon.hs_metrics
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/c4/918f7df06867c246448e911c8cda89/HCC1395_BL/HCC1395_BL.md/reads_per_target.xgen-exome-hyb-panel-v2-targets-hg38_minus_altera_v3_targets_postQC_hg38.bed.tsv
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/b3/5599d0a431f801ac42920a517c0f8d/HCC1395_BL.fastp.json
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/e9/213d6a9a2c0ea9fe79578aa2d24aaf/HCC1395_tumor/HCC1395_tumor.md/reads_per_target.altera_v3_targets_postQC_hg38.bed.tsv
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/77/a170f9787852f253579d1b9088aba7/output/Reports/Demultiplex_Stats.csv
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/f4/b7195145f277341eef69e550af877b/HCC1395_BL.fastp.json
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/6d/f56c194c586e4440bf2c6ff0812049/Sig_18_Blood/Sig_18_Blood.md/read_qc.foresight_clarity_targets_hg38.bed.tsv
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/24/d96ec4b8efe4db295c0e48c9a38b79/Sig_18_Blood.fastp.json
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/6d/f56c194c586e4440bf2c6ff0812049/Sig_18_Blood/Sig_18_Blood.md/reads_per_target.altera_v3_targets_noncoding_postQC_hg38.bed.tsv
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/6d/f56c194c586e4440bf2c6ff0812049/Sig_18_Blood/Sig_18_Blood.md/reads_per_target.FINAL_hotspot_list_07302025_hg38_sorted.bed.tsv
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/6d/f56c194c586e4440bf2c6ff0812049/Sig_18_Blood/Sig_18_Blood.md/reads_per_target.altera_v3_targets_postQC_hg38.bed.tsv
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/e9/213d6a9a2c0ea9fe79578aa2d24aaf/HCC1395_tumor/HCC1395_tumor.md/gc_bias_qc.altera_v3_targets_noncoding_postQC_hg38.bed.tsv
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/01/55878f9faa68bbb9b0878e40ef69d8/HCC1395_BL_altera_v3_targets_postQC_hg38.sentieon.hs_metrics
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/6d/f56c194c586e4440bf2c6ff0812049/Sig_18_Blood/Sig_18_Blood.md/gc_bias_qc.xgen-exome-hyb-panel-v2-targets-hg38_minus_altera_v3_targets_postQC_hg38.bed.tsv
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/8f/d81ade9fa6ec63088e841a03aec035/HCC1395_tumor_altera_v3_targets_noncoding_postQC_hg38.sentieon.hs_metrics
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/6f/ec080176bf81e3b2349061e1e2c87c/output/Reports/fastq_list.csv
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/fe/6361504ab2227d9de1656800b41e59/output/Reports/Top_Unknown_Barcodes.csv
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/a4/9bcea3b1bbeabcc54da1a2fcc2d4c5/Sig_18_Blood.fastp.json
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/6d/f56c194c586e4440bf2c6ff0812049/Sig_18_Blood/Sig_18_Blood.md/full_bed.bed
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/c4/918f7df06867c246448e911c8cda89/HCC1395_BL/HCC1395_BL.md/HCC1395_BL.md.noise_summary.tsv
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/6d/f56c194c586e4440bf2c6ff0812049/Sig_18_Blood/Sig_18_Blood.md/gc_bias_qc.altera_v3_targets_noncoding_postQC_hg38.bed.tsv
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/01/15ad96b7409a285238286991136ee1/Sig_18_tissue/Sig_18_tissue.md/depth_stats.altera_v3_targets_postQC_hg38.bed.tsv
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/c4/918f7df06867c246448e911c8cda89/HCC1395_BL/HCC1395_BL.md/total_base_counts.altera_v3_targets_postQC_hg38.bed.tsv
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/e9/213d6a9a2c0ea9fe79578aa2d24aaf/HCC1395_tumor/HCC1395_tumor.md/total_base_counts.altera_v3_targets_coding_postQC_hg38.bed.tsv
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/01/15ad96b7409a285238286991136ee1/Sig_18_tissue/Sig_18_tissue.md/total_base_counts.FINAL_hotspot_list_07302025_hg38_sorted.bed.tsv
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/e9/213d6a9a2c0ea9fe79578aa2d24aaf/HCC1395_tumor/HCC1395_tumor.md/read_qc.xgen-exome-hyb-panel-v2-targets-hg38_minus_altera_v3_targets_postQC_hg38.bed.tsv
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/d1/8baba49f96d0fbbac127750a5b6684/output/Reports/RunInfo.xml
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/c4/918f7df06867c246448e911c8cda89/HCC1395_BL/HCC1395_BL.md/read_qc.xgen-exome-hyb-panel-v2_AND_altera_v3_probes_short_hg38_AND_cdx_spike_custom30off4x_hg38_AND_foresight_clarity_footprint.bed.tsv
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/7a/4c0bd99a2af9ac45efe9c1b1bbf6ef/HCC1395_BL_xgen-exome-hyb-panel-v2-targets-hg38_minus_altera_v3_targets_postQC_hg38.sentieon.hs_metrics
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/6d/f56c194c586e4440bf2c6ff0812049/Sig_18_Blood/Sig_18_Blood.md/read_qc.altera_v3_targets_noncoding_postQC_hg38.bed.tsv
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/c4/918f7df06867c246448e911c8cda89/HCC1395_BL/HCC1395_BL.md/depth_stats.altera_v3_targets_postQC_hg38.bed.tsv
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/3a/645caaafb331e2c3c0292d02903b9e/HCC1395_BL.mosdepth.global.dist.txt
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/77/a170f9787852f253579d1b9088aba7/output/Reports/IndexMetricsOut.bin
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/87/53632924df4c5bd048407d9727ed82/Sig_18_Blood.fastp.json
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/6d/f56c194c586e4440bf2c6ff0812049/Sig_18_Blood/Sig_18_Blood.md/qc_complete.txt
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/c4/918f7df06867c246448e911c8cda89/HCC1395_BL/HCC1395_BL.md/gc_bias_qc.altera_v3_targets_coding_postQC_hg38.bed.tsv
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/6d/f56c194c586e4440bf2c6ff0812049/Sig_18_Blood/Sig_18_Blood.md/read_qc.xgen-exome-hyb-panel-v2-targets-hg38_minus_altera_v3_targets_postQC_hg38.bed.tsv
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/e9/213d6a9a2c0ea9fe79578aa2d24aaf/HCC1395_tumor/HCC1395_tumor.md/reads_per_target.xgen-exome-hyb-panel-v2-targets-hg38_minus_altera_v3_targets_postQC_hg38.bed.tsv
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/e9/213d6a9a2c0ea9fe79578aa2d24aaf/HCC1395_tumor/HCC1395_tumor.md/total_base_counts.FINAL_hotspot_list_07302025_hg38_sorted.bed.tsv
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/01/15ad96b7409a285238286991136ee1/Sig_18_tissue/Sig_18_tissue.md/read_qc.xgen-exome-hyb-panel-v2-targets-hg38_minus_altera_v3_targets_postQC_hg38.bed.tsv
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/e9/213d6a9a2c0ea9fe79578aa2d24aaf/HCC1395_tumor/HCC1395_tumor.md/total_base_counts.foresight_clarity_targets_hg38.bed.tsv
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/01/15ad96b7409a285238286991136ee1/Sig_18_tissue/Sig_18_tissue.md/gc_bias_qc.altera_v3_targets_noncoding_postQC_hg38.bed.tsv
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/aa/4c6a361caee33e1c6657fb511978ea/.command.sh
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/e5/7c03da3863c3954e50630360f667e2/output/Reports/SampleSheet.csv
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/01/15ad96b7409a285238286991136ee1/Sig_18_tissue/Sig_18_tissue.md/reads_per_target.xgen-exome-hyb-panel-v2_AND_altera_v3_probes_short_hg38_AND_cdx_spike_custom30off4x_hg38_AND_foresight_clarity_footprint.bed.tsv
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/cb/1f3f5d48ef1b235d1c38bee4cab1ab/output/Reports/Demultiplex_Tile_Stats.csv
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/69/ac664a560fcca89e8714ca5487bcab/Sig_18_Blood_xgen-exome-hyb-panel-v2_AND_altera_v3_probes_short_hg38_AND_cdx_spike_custom30off4x_hg38_AND_foresight_clarity_footprint.sentieon.hs_metrics
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/01/15ad96b7409a285238286991136ee1/Sig_18_tissue/Sig_18_tissue.md/Sig_18_tissue.md.noise_summary.tsv
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/c5/a9cbd2afeeaa4ff683b7a218ce8125/Sig_18_Blood.mosdepth.summary.txt
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/6f/ec080176bf81e3b2349061e1e2c87c/output/Reports/Index_Hopping_Counts.csv
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/d0/6bfc8ceb16e7ffcb01befe62bda124/HCC1395_tumor.fastp.json
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/77/a170f9787852f253579d1b9088aba7/output/Reports/Index_Hopping_Counts.csv
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/92/01963e6b27b0787586b3c141208fce/Sig_18_tissue.sentieon.base_distribution_by_cycle_metrics
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/01/15ad96b7409a285238286991136ee1/Sig_18_tissue/Sig_18_tissue.md/reads_per_target.foresight_clarity_targets_hg38.bed.tsv
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/cb/1f3f5d48ef1b235d1c38bee4cab1ab/output/Reports/Quality_Tile_Metrics.csv
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/e9/213d6a9a2c0ea9fe79578aa2d24aaf/HCC1395_tumor/HCC1395_tumor.md/depth_stats.altera_v3_targets_noncoding_postQC_hg38.bed.tsv
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/c4/918f7df06867c246448e911c8cda89/HCC1395_BL/HCC1395_BL.md/depth_stats.FINAL_hotspot_list_07302025_hg38_sorted.bed.tsv
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/d1/8baba49f96d0fbbac127750a5b6684/output/Reports/IndexMetricsOut.bin
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/6d/f56c194c586e4440bf2c6ff0812049/Sig_18_Blood/Sig_18_Blood.md/depth_stats.altera_v3_targets_coding_postQC_hg38.bed.tsv
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/06/295f471a0a0535cd46010ed3a0ba5f/HCC1395_BL.sentieon.insert_size_metrics
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/6d/f56c194c586e4440bf2c6ff0812049/Sig_18_Blood/Sig_18_Blood.md/depth_stats.xgen-exome-hyb-panel-v2-targets-hg38_minus_altera_v3_targets_postQC_hg38.bed.tsv
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/c4/918f7df06867c246448e911c8cda89/HCC1395_BL/HCC1395_BL.md/saturation_qc.tsv
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/cb/1f3f5d48ef1b235d1c38bee4cab1ab/output/Reports/SampleSheet.csv
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/e9/213d6a9a2c0ea9fe79578aa2d24aaf/HCC1395_tumor/HCC1395_tumor.md/depth_stats.xgen-exome-hyb-panel-v2_AND_altera_v3_probes_short_hg38_AND_cdx_spike_custom30off4x_hg38_AND_foresight_clarity_footprint.bed.tsv
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/c4/918f7df06867c246448e911c8cda89/HCC1395_BL/HCC1395_BL.md/read_qc.xgen-exome-hyb-panel-v2-targets-hg38_minus_altera_v3_targets_postQC_hg38.bed.tsv
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/e9/213d6a9a2c0ea9fe79578aa2d24aaf/HCC1395_tumor/HCC1395_tumor.md/read_qc.xgen-exome-hyb-panel-v2-targets-hg38_AND_altera_v3_targets_postQC_hg38_AND_foresight_clarity.bed.tsv
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/82/d2362959e3d227d336c30ffeb16d2d/output/Reports/Top_Unknown_Barcodes.csv
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/6d/f56c194c586e4440bf2c6ff0812049/Sig_18_Blood/Sig_18_Blood.md/read_qc.FINAL_hotspot_list_07302025_hg38_sorted.bed.tsv
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/6d/f56c194c586e4440bf2c6ff0812049/Sig_18_Blood/Sig_18_Blood.md/depth_stats.altera_v3_targets_postQC_hg38.bed.tsv
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/83/638499465d3eab6674c2fdf32a7fc4/Sig_18_Blood_altera_v3_targets_noncoding_postQC_hg38.sentieon.hs_metrics
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/82/d2362959e3d227d336c30ffeb16d2d/output/Reports/Quality_Tile_Metrics.csv
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/6d/f56c194c586e4440bf2c6ff0812049/Sig_18_Blood/Sig_18_Blood.md/depth_stats.xgen-exome-hyb-panel-v2-targets-hg38_AND_altera_v3_targets_postQC_hg38_AND_foresight_clarity.bed.tsv
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/31/43288d2dabb562706d05f3e55a2ce5/HCC1395_tumor.stats
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/cb/1f3f5d48ef1b235d1c38bee4cab1ab/output/Reports/RunInfo.xml
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/6f/ec080176bf81e3b2349061e1e2c87c/output/Reports/Adapter_Metrics.csv
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/c4/918f7df06867c246448e911c8cda89/HCC1395_BL/HCC1395_BL.md/contamination.tsv
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/01/15ad96b7409a285238286991136ee1/Sig_18_tissue/Sig_18_tissue.md/gc_bias_qc.foresight_clarity_targets_hg38.bed.tsv
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/e5/7c03da3863c3954e50630360f667e2/output/Reports/Demultiplex_Detailed_Stats.csv
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/fe/6361504ab2227d9de1656800b41e59/output/Reports/Quality_Metrics.csv
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/e9/213d6a9a2c0ea9fe79578aa2d24aaf/HCC1395_tumor/HCC1395_tumor.md/depth_stats.altera_v3_targets_postQC_hg38.bed.tsv
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/0e/62c809939583567d8fa113f3b1a3aa/HCC1395_BL.stats
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/01/15ad96b7409a285238286991136ee1/Sig_18_tissue/Sig_18_tissue.md/gc_bias_qc.altera_v3_targets_postQC_hg38.bed.tsv
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/e7/fafc2264ad7b3cf549ba37d95e9405/HCC1395_tumor_xgen-exome-hyb-panel-v2-targets-hg38_minus_altera_v3_targets_postQC_hg38.sentieon.hs_metrics
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/d1/8baba49f96d0fbbac127750a5b6684/output/Reports/fastq_list.csv
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/82/d2362959e3d227d336c30ffeb16d2d/output/Reports/SampleSheet.csv
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/6d/f56c194c586e4440bf2c6ff0812049/Sig_18_Blood/Sig_18_Blood.md/Sig_18_Blood.md.depth_hist.tsv
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/c4/918f7df06867c246448e911c8cda89/HCC1395_BL/HCC1395_BL.md/reads_per_target.altera_v3_targets_postQC_hg38.bed.tsv
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/cb/1f3f5d48ef1b235d1c38bee4cab1ab/output/Reports/IndexMetricsOut.bin
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/c4/918f7df06867c246448e911c8cda89/HCC1395_BL/HCC1395_BL.md/reads_per_target.altera_v3_targets_noncoding_postQC_hg38.bed.tsv
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/c5/a9cbd2afeeaa4ff683b7a218ce8125/Sig_18_Blood.mosdepth.global.dist.txt
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/01/15ad96b7409a285238286991136ee1/Sig_18_tissue/Sig_18_tissue.md/reads_per_target.FINAL_hotspot_list_07302025_hg38_sorted.bed.tsv
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/c4/918f7df06867c246448e911c8cda89/HCC1395_BL/HCC1395_BL.md/gc_bias_qc.foresight_clarity_targets_hg38.bed.tsv
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/01/15ad96b7409a285238286991136ee1/Sig_18_tissue/Sig_18_tissue.md/total_base_counts.xgen-exome-hyb-panel-v2-targets-hg38_AND_altera_v3_targets_postQC_hg38_AND_foresight_clarity.bed.tsv
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/e9/213d6a9a2c0ea9fe79578aa2d24aaf/HCC1395_tumor/HCC1395_tumor.md/HCC1395_tumor.md.noise_summary.tsv
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/82/d2362959e3d227d336c30ffeb16d2d/output/Reports/Demultiplex_Stats.csv
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/fe/6361504ab2227d9de1656800b41e59/output/Reports/Index_Hopping_Counts.csv
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/19/dc56f53229d59fbb8f36034b7f3735/HCC1395_tumor_altera_v3_targets_coding_postQC_hg38.sentieon.hs_metrics
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/6d/f56c194c586e4440bf2c6ff0812049/Sig_18_Blood/Sig_18_Blood.md/gc_bias_qc.foresight_clarity_targets_hg38.bed.tsv
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/6d/f56c194c586e4440bf2c6ff0812049/Sig_18_Blood/Sig_18_Blood.md/reads_per_target.altera_v3_targets_coding_postQC_hg38.bed.tsv
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/c4/918f7df06867c246448e911c8cda89/HCC1395_BL/HCC1395_BL.md/reads_per_target.FINAL_hotspot_list_07302025_hg38_sorted.bed.tsv
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/81/89be7b55dd3a63d13301e5582027c4/HCC1395_tumor.md.metrics
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/01/15ad96b7409a285238286991136ee1/Sig_18_tissue/Sig_18_tissue.md/read_qc.FINAL_hotspot_list_07302025_hg38_sorted.bed.tsv
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/0e/cb052eb1b199967655db98e759fa29/output/Reports/fastq_list.csv
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/d1/8baba49f96d0fbbac127750a5b6684/output/Reports/Adapter_Cycle_Metrics.csv
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/01/15ad96b7409a285238286991136ee1/Sig_18_tissue/Sig_18_tissue.md/qc_complete.txt
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/01/15ad96b7409a285238286991136ee1/Sig_18_tissue/Sig_18_tissue.md/reads_per_target.altera_v3_targets_postQC_hg38.bed.tsv
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/cb/1f3f5d48ef1b235d1c38bee4cab1ab/output/Reports/Demultiplex_Stats.csv
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/e9/213d6a9a2c0ea9fe79578aa2d24aaf/HCC1395_tumor/HCC1395_tumor.md/read_qc.altera_v3_targets_noncoding_postQC_hg38.bed.tsv
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/0e/cb052eb1b199967655db98e759fa29/output/Reports/SampleSheet.csv
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/46/fb26f93276c6b35cf542925a342d8d/Sig_18_Blood.sentieon.insert_size_metrics
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/e9/213d6a9a2c0ea9fe79578aa2d24aaf/HCC1395_tumor/HCC1395_tumor.md/gc_bias_qc.foresight_clarity_targets_hg38.bed.tsv
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/e5/7c03da3863c3954e50630360f667e2/output/Reports/IndexMetricsOut.bin
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/e9/213d6a9a2c0ea9fe79578aa2d24aaf/HCC1395_tumor/HCC1395_tumor.md/depth_stats.FINAL_hotspot_list_07302025_hg38_sorted.bed.tsv
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/77/a170f9787852f253579d1b9088aba7/output/Reports/fastq_list.csv
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/01/15ad96b7409a285238286991136ee1/Sig_18_tissue/Sig_18_tissue.md/gc_bias_qc.xgen-exome-hyb-panel-v2-targets-hg38_minus_altera_v3_targets_postQC_hg38.bed.tsv
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/e5/7c03da3863c3954e50630360f667e2/output/Reports/RunInfo.xml
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/c4/918f7df06867c246448e911c8cda89/HCC1395_BL/HCC1395_BL.md/gc_bias_qc.altera_v3_targets_noncoding_postQC_hg38.bed.tsv
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/e9/213d6a9a2c0ea9fe79578aa2d24aaf/HCC1395_tumor/HCC1395_tumor.md/HCC1395_tumor.md.depth_hist.tsv
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/01/15ad96b7409a285238286991136ee1/Sig_18_tissue/Sig_18_tissue.md/depth_stats.FINAL_hotspot_list_07302025_hg38_sorted.bed.tsv
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/77/a170f9787852f253579d1b9088aba7/output/Reports/Adapter_Cycle_Metrics.csv
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/e9/213d6a9a2c0ea9fe79578aa2d24aaf/HCC1395_tumor/HCC1395_tumor.md/depth_stats.xgen-exome-hyb-panel-v2-targets-hg38_minus_altera_v3_targets_postQC_hg38.bed.tsv
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/6d/f56c194c586e4440bf2c6ff0812049/Sig_18_Blood/Sig_18_Blood.md/read_qc.xgen-exome-hyb-panel-v2-targets-hg38_AND_altera_v3_targets_postQC_hg38_AND_foresight_clarity.bed.tsv
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/e9/213d6a9a2c0ea9fe79578aa2d24aaf/HCC1395_tumor/HCC1395_tumor.md/total_base_counts.xgen-exome-hyb-panel-v2-targets-hg38_minus_altera_v3_targets_postQC_hg38.bed.tsv
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/0e/cb052eb1b199967655db98e759fa29/output/Reports/RunInfo.xml
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/82/d2362959e3d227d336c30ffeb16d2d/output/Reports/Adapter_Cycle_Metrics.csv
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/6f/ec080176bf81e3b2349061e1e2c87c/output/Reports/RunInfo.xml
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/22/e8b54fd79143313e686d6e21e72d50/HCC1395_BL.fastp.json
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/0c/6a3c235a33111426d67af38808f0b2/Sig_18_tissue_xgen-exome-hyb-panel-v2-targets-hg38_AND_altera_v3_targets_postQC_hg38_AND_foresight_clarity.sentieon.hs_metrics
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/06/295f471a0a0535cd46010ed3a0ba5f/HCC1395_BL.sentieon.alignment_summary_metrics
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/77/a170f9787852f253579d1b9088aba7/output/Reports/Demultiplex_Tile_Stats.csv
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/c4/918f7df06867c246448e911c8cda89/HCC1395_BL/HCC1395_BL.md/depth_stats.foresight_clarity_targets_hg38.bed.tsv
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/3a/645caaafb331e2c3c0292d02903b9e/HCC1395_BL.mosdepth.summary.txt
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/6d/f56c194c586e4440bf2c6ff0812049/Sig_18_Blood/Sig_18_Blood_full_basic_stats.tsv
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/01/15ad96b7409a285238286991136ee1/Sig_18_tissue/Sig_18_tissue.md/total_base_counts.altera_v3_targets_postQC_hg38.bed.tsv
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/d1/8baba49f96d0fbbac127750a5b6684/output/Reports/Quality_Metrics.csv
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/c4/918f7df06867c246448e911c8cda89/HCC1395_BL/HCC1395_BL.md/depth_stats.xgen-exome-hyb-panel-v2_AND_altera_v3_probes_short_hg38_AND_cdx_spike_custom30off4x_hg38_AND_foresight_clarity_footprint.bed.tsv
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/6d/f56c194c586e4440bf2c6ff0812049/Sig_18_Blood/Sig_18_Blood.md/reads_per_target.xgen-exome-hyb-panel-v2_AND_altera_v3_probes_short_hg38_AND_cdx_spike_custom30off4x_hg38_AND_foresight_clarity_footprint.bed.tsv
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/01/15ad96b7409a285238286991136ee1/Sig_18_tissue/Sig_18_tissue.md/reads_per_target.altera_v3_targets_coding_postQC_hg38.bed.tsv
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/ae/d846bbd7583f21108f44e58d5e7bf2/HCC1395_BL_altera_v3_targets_coding_postQC_hg38.sentieon.hs_metrics
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/e9/213d6a9a2c0ea9fe79578aa2d24aaf/HCC1395_tumor/HCC1395_tumor.md/read_qc.FINAL_hotspot_list_07302025_hg38_sorted.bed.tsv
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/e9/213d6a9a2c0ea9fe79578aa2d24aaf/HCC1395_tumor/HCC1395_tumor.md/total_base_counts.altera_v3_targets_postQC_hg38.bed.tsv
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/1f/b1e9f54065543beb31deeb373b4c5d/Sig_18_tissue.md.metrics
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/97/cd5a11c37c4bdf986bd22eccc4f46e/HCC1395_tumor.mosdepth.global.dist.txt
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/0e/cb052eb1b199967655db98e759fa29/output/Reports/Demultiplex_Detailed_Stats.csv
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/6d/f56c194c586e4440bf2c6ff0812049/Sig_18_Blood/Sig_18_Blood.md/contamination.tsv
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/e5/7c03da3863c3954e50630360f667e2/output/Reports/Quality_Metrics.csv
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/77/a170f9787852f253579d1b9088aba7/output/Reports/Adapter_Metrics.csv
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/dc/034e05dc55df5feffff45afe9c99c1/Sig_18_tissue.mosdepth.global.dist.txt
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/c4/918f7df06867c246448e911c8cda89/HCC1395_BL/HCC1395_BL.md/total_base_counts.altera_v3_targets_coding_postQC_hg38.bed.tsv
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/6d/f56c194c586e4440bf2c6ff0812049/Sig_18_Blood/Sig_18_Blood.md/fragsize.fragsize.table
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/a8/7b6344e604a4a3f5a01e6cc770fa7a/HCC1395_tumor.fastp.json
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/01/15ad96b7409a285238286991136ee1/Sig_18_tissue/Sig_18_tissue.md/depth_stats.xgen-exome-hyb-panel-v2-targets-hg38_minus_altera_v3_targets_postQC_hg38.bed.tsv
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/c4/918f7df06867c246448e911c8cda89/HCC1395_BL/HCC1395_BL.md/total_base_counts.xgen-exome-hyb-panel-v2_AND_altera_v3_probes_short_hg38_AND_cdx_spike_custom30off4x_hg38_AND_foresight_clarity_footprint.bed.tsv
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/77/a170f9787852f253579d1b9088aba7/output/Reports/SampleSheet.csv
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/ec/77c1118bb3acc540288187d841e707/HCC1395_BL.fastp.json
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/01/15ad96b7409a285238286991136ee1/Sig_18_tissue/Sig_18_tissue.md/reads_per_target.altera_v3_targets_noncoding_postQC_hg38.bed.tsv
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/01/15ad96b7409a285238286991136ee1/Sig_18_tissue/Sig_18_tissue.md/fragsize.fragsize.table
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/01/15ad96b7409a285238286991136ee1/Sig_18_tissue/Sig_18_tissue.md/total_base_counts.xgen-exome-hyb-panel-v2-targets-hg38_minus_altera_v3_targets_postQC_hg38.bed.tsv
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/01/15ad96b7409a285238286991136ee1/Sig_18_tissue/Sig_18_tissue.md/gc_bias_qc.altera_v3_targets_coding_postQC_hg38.bed.tsv
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/7b/ff6704e738a1ba32a04dc36326819b/Sig_18_tissue_altera_v3_targets_noncoding_postQC_hg38.sentieon.hs_metrics
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/c4/918f7df06867c246448e911c8cda89/HCC1395_BL/HCC1395_BL.md/read_qc.xgen-exome-hyb-panel-v2-targets-hg38_AND_altera_v3_targets_postQC_hg38_AND_foresight_clarity.bed.tsv
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/72/7101f06ac7558f9cf8f12eea6b02ec/HCC1395_BL_xgen-exome-hyb-panel-v2_AND_altera_v3_probes_short_hg38_AND_cdx_spike_custom30off4x_hg38_AND_foresight_clarity_footprint.sentieon.hs_metrics
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/01/15ad96b7409a285238286991136ee1/Sig_18_tissue/Sig_18_tissue.md/gc_bias_qc.xgen-exome-hyb-panel-v2_AND_altera_v3_probes_short_hg38_AND_cdx_spike_custom30off4x_hg38_AND_foresight_clarity_footprint.bed.tsv
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/70/4db273d371c85768f4819eeb75aed3/HCC1395_tumor.fastp.json
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/97/cd5a11c37c4bdf986bd22eccc4f46e/HCC1395_tumor.mosdepth.summary.txt
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/cb/1f3f5d48ef1b235d1c38bee4cab1ab/output/Reports/fastq_list.csv
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/c4/918f7df06867c246448e911c8cda89/HCC1395_BL/HCC1395_BL.md/depth_stats.xgen-exome-hyb-panel-v2-targets-hg38_minus_altera_v3_targets_postQC_hg38.bed.tsv
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/6d/f56c194c586e4440bf2c6ff0812049/Sig_18_Blood/Sig_18_Blood.md/total_base_counts.xgen-exome-hyb-panel-v2-targets-hg38_minus_altera_v3_targets_postQC_hg38.bed.tsv
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/d1/060c20bd01d00a24c86b73816247bd/HCC1395_BL.fastp.json
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/c4/918f7df06867c246448e911c8cda89/HCC1395_BL/HCC1395_BL.md/depth_stats.altera_v3_targets_coding_postQC_hg38.bed.tsv
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/e9/213d6a9a2c0ea9fe79578aa2d24aaf/HCC1395_tumor/HCC1395_tumor_basic_stats.tsv
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/0e/cb052eb1b199967655db98e759fa29/output/Reports/Index_Hopping_Counts.csv
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/01/15ad96b7409a285238286991136ee1/Sig_18_tissue/Sig_18_tissue.md/reads_per_target.xgen-exome-hyb-panel-v2-targets-hg38_AND_altera_v3_targets_postQC_hg38_AND_foresight_clarity.bed.tsv
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/71/601ae47f057b5bf03210256cde7144/Sig_18_Blood_foresight_clarity_targets_hg38.sentieon.hs_metrics
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/e9/213d6a9a2c0ea9fe79578aa2d24aaf/HCC1395_tumor/HCC1395_tumor.md/depth_stats.altera_v3_targets_coding_postQC_hg38.bed.tsv
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/6d/f56c194c586e4440bf2c6ff0812049/Sig_18_Blood/Sig_18_Blood.md/total_base_counts.altera_v3_targets_postQC_hg38.bed.tsv
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/e9/213d6a9a2c0ea9fe79578aa2d24aaf/HCC1395_tumor/HCC1395_tumor.md/gc_bias_qc.xgen-exome-hyb-panel-v2-targets-hg38_AND_altera_v3_targets_postQC_hg38_AND_foresight_clarity.bed.tsv
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/07/1f4fc99a98c751069d6e171833351f/HCC1395_tumor.fastp.json
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/c4/918f7df06867c246448e911c8cda89/HCC1395_BL/HCC1395_BL.md/total_base_counts.xgen-exome-hyb-panel-v2-targets-hg38_minus_altera_v3_targets_postQC_hg38.bed.tsv
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/6d/f56c194c586e4440bf2c6ff0812049/Sig_18_Blood/Sig_18_Blood.md/depth_stats.foresight_clarity_targets_hg38.bed.tsv
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/e9/213d6a9a2c0ea9fe79578aa2d24aaf/HCC1395_tumor/HCC1395_tumor.md/gc_bias_qc.xgen-exome-hyb-panel-v2-targets-hg38_minus_altera_v3_targets_postQC_hg38.bed.tsv
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/e1/fe009f420fdbbcb4ca3cacd3d04035/HCC1395_tumor.fastp.json
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/6f/ec080176bf81e3b2349061e1e2c87c/output/Reports/Adapter_Cycle_Metrics.csv
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/aa/4c6a361caee33e1c6657fb511978ea/.command.run
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/64/4e470d818d1a6a2d68d621d5293ffc/Sig_18_tissue.fastp.json
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/46/16630988f146d309bdaa8287eb4583/HCC1395_tumor_FINAL_hotspot_list_07302025_hg38_sorted.sentieon.hs_metrics
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/e9/213d6a9a2c0ea9fe79578aa2d24aaf/HCC1395_tumor/HCC1395_tumor.md/qc_complete.txt
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/08/ba44596c31b07530f5a72f671aa281/Sig_18_Blood.fastp.json
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/01/15ad96b7409a285238286991136ee1/Sig_18_tissue/Sig_18_tissue.md/saturation_qc.tsv
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/f5/8d5f9e97e91c33634ed2343c5b31a1/HCC1395_tumor.sentieon.insert_size_metrics
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/46/fb26f93276c6b35cf542925a342d8d/Sig_18_Blood.sentieon.base_distribution_by_cycle_metrics
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/e9/213d6a9a2c0ea9fe79578aa2d24aaf/HCC1395_tumor/HCC1395_tumor.md/gc_bias_qc.altera_v3_targets_coding_postQC_hg38.bed.tsv
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/6f/ec080176bf81e3b2349061e1e2c87c/output/Reports/Demultiplex_Detailed_Stats.csv
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/6d/f56c194c586e4440bf2c6ff0812049/Sig_18_Blood/Sig_18_Blood.md/total_base_counts.foresight_clarity_targets_hg38.bed.tsv
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/c4/918f7df06867c246448e911c8cda89/HCC1395_BL/HCC1395_BL.md/fragsize.fragsize.table
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/e5/7c03da3863c3954e50630360f667e2/output/Reports/Demultiplex_Tile_Stats.csv
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/c4/918f7df06867c246448e911c8cda89/HCC1395_BL/HCC1395_BL.md/gc_bias_qc.altera_v3_targets_postQC_hg38.bed.tsv
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/01/15ad96b7409a285238286991136ee1/Sig_18_tissue/Sig_18_tissue.md/depth_stats.altera_v3_targets_noncoding_postQC_hg38.bed.tsv
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/6d/f56c194c586e4440bf2c6ff0812049/Sig_18_Blood/Sig_18_Blood.md/reads_per_target.xgen-exome-hyb-panel-v2-targets-hg38_minus_altera_v3_targets_postQC_hg38.bed.tsv
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/c4/918f7df06867c246448e911c8cda89/HCC1395_BL/HCC1395_BL.md/total_base_counts.foresight_clarity_targets_hg38.bed.tsv
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/e5/7c03da3863c3954e50630360f667e2/output/Reports/Adapter_Metrics.csv
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/ef/41f6ac3238019dd7c5103ab4e635bb/HCC1395_BL_foresight_clarity_targets_hg38.sentieon.hs_metrics
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/dc/034e05dc55df5feffff45afe9c99c1/Sig_18_tissue.mosdepth.summary.txt
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/01/15ad96b7409a285238286991136ee1/Sig_18_tissue/Sig_18_tissue_full_basic_stats.tsv
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/cb/1f3f5d48ef1b235d1c38bee4cab1ab/output/Reports/Top_Unknown_Barcodes.csv
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/c4/918f7df06867c246448e911c8cda89/HCC1395_BL/HCC1395_BL.md/gc_bias_qc.xgen-exome-hyb-panel-v2-targets-hg38_AND_altera_v3_targets_postQC_hg38_AND_foresight_clarity.bed.tsv
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/6f/ec080176bf81e3b2349061e1e2c87c/output/Reports/Demultiplex_Tile_Stats.csv
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/d9/62e684e38db63d3504964fc2b1cb83/Sig_18_Blood_FINAL_hotspot_list_07302025_hg38_sorted.sentieon.hs_metrics
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/6f/ec080176bf81e3b2349061e1e2c87c/output/Reports/IndexMetricsOut.bin
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/e9/213d6a9a2c0ea9fe79578aa2d24aaf/HCC1395_tumor/HCC1395_tumor.md/depth_stats.foresight_clarity_targets_hg38.bed.tsv
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/e9/213d6a9a2c0ea9fe79578aa2d24aaf/HCC1395_tumor/HCC1395_tumor.md/gc_bias_qc.xgen-exome-hyb-panel-v2_AND_altera_v3_probes_short_hg38_AND_cdx_spike_custom30off4x_hg38_AND_foresight_clarity_footprint.bed.tsv
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/e9/213d6a9a2c0ea9fe79578aa2d24aaf/HCC1395_tumor/HCC1395_tumor_full_basic_stats.tsv
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/97/cd5a11c37c4bdf986bd22eccc4f46e/HCC1395_tumor.mosdepth.region.dist.txt
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/fe/6361504ab2227d9de1656800b41e59/output/Reports/Adapter_Cycle_Metrics.csv
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/fe/6361504ab2227d9de1656800b41e59/output/Reports/Demultiplex_Detailed_Stats.csv
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/92/01963e6b27b0787586b3c141208fce/Sig_18_tissue.sentieon.insert_size_metrics
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/e9/213d6a9a2c0ea9fe79578aa2d24aaf/HCC1395_tumor/HCC1395_tumor.md/gc_bias_qc.FINAL_hotspot_list_07302025_hg38_sorted.bed.tsv
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/3a/645caaafb331e2c3c0292d02903b9e/HCC1395_BL.mosdepth.region.dist.txt
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/fe/6361504ab2227d9de1656800b41e59/output/Reports/fastq_list.csv
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/1d/21e19158014121d094945b6ca14128/Sig_18_Blood.fastp.json
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/c4/918f7df06867c246448e911c8cda89/HCC1395_BL/HCC1395_BL.md/reads_per_target.xgen-exome-hyb-panel-v2-targets-hg38_AND_altera_v3_targets_postQC_hg38_AND_foresight_clarity.bed.tsv
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/d1/8baba49f96d0fbbac127750a5b6684/output/Reports/Quality_Tile_Metrics.csv
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/e9/ef1f3b6bba09f4160fd58b116379fc/HCC1395_BL_altera_v3_targets_noncoding_postQC_hg38.sentieon.hs_metrics
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/d1/8baba49f96d0fbbac127750a5b6684/output/Reports/SampleSheet.csv
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/6d/f56c194c586e4440bf2c6ff0812049/Sig_18_Blood/Sig_18_Blood.md/read_qc.altera_v3_targets_postQC_hg38.bed.tsv
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/82/d2362959e3d227d336c30ffeb16d2d/output/Reports/Demultiplex_Tile_Stats.csv
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/c4/918f7df06867c246448e911c8cda89/HCC1395_BL/HCC1395_BL.md/reads_per_target.xgen-exome-hyb-panel-v2_AND_altera_v3_probes_short_hg38_AND_cdx_spike_custom30off4x_hg38_AND_foresight_clarity_footprint.bed.tsv
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/77/a170f9787852f253579d1b9088aba7/output/Reports/Quality_Metrics.csv
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/c4/918f7df06867c246448e911c8cda89/HCC1395_BL/HCC1395_BL.md/depth_stats.altera_v3_targets_noncoding_postQC_hg38.bed.tsv
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/e9/213d6a9a2c0ea9fe79578aa2d24aaf/HCC1395_tumor/HCC1395_tumor.md/depth_stats.xgen-exome-hyb-panel-v2-targets-hg38_AND_altera_v3_targets_postQC_hg38_AND_foresight_clarity.bed.tsv
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/c4/918f7df06867c246448e911c8cda89/HCC1395_BL/HCC1395_BL.md/HCC1395_BL.md.depth_hist.tsv
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/6d/f56c194c586e4440bf2c6ff0812049/Sig_18_Blood/Sig_18_Blood_basic_stats.tsv
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/e5/7c03da3863c3954e50630360f667e2/output/Reports/Demultiplex_Stats.csv
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/01/15ad96b7409a285238286991136ee1/Sig_18_tissue/Sig_18_tissue.md/depth_stats.foresight_clarity_targets_hg38.bed.tsv
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/a2/6b3f8e69ca336c6a31d1bb6f925ede/HCC1395_BL_FINAL_hotspot_list_07302025_hg38_sorted.sentieon.hs_metrics
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/c7/ebb7d353c4607f66f797befd1b86ee/HCC1395_tumor_altera_v3_targets_postQC_hg38.sentieon.hs_metrics
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/d1/8baba49f96d0fbbac127750a5b6684/output/Reports/Adapter_Metrics.csv
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/0e/cb052eb1b199967655db98e759fa29/output/Reports/Demultiplex_Tile_Stats.csv
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/01/15ad96b7409a285238286991136ee1/Sig_18_tissue/Sig_18_tissue.md/read_qc.xgen-exome-hyb-panel-v2_AND_altera_v3_probes_short_hg38_AND_cdx_spike_custom30off4x_hg38_AND_foresight_clarity_footprint.bed.tsv
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/01/15ad96b7409a285238286991136ee1/Sig_18_tissue/Sig_18_tissue.md/total_base_counts.foresight_clarity_targets_hg38.bed.tsv
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/82/d2362959e3d227d336c30ffeb16d2d/output/Reports/IndexMetricsOut.bin
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/c4/918f7df06867c246448e911c8cda89/HCC1395_BL/HCC1395_BL.md/read_qc.altera_v3_targets_postQC_hg38.bed.tsv
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/e5/7c03da3863c3954e50630360f667e2/output/Reports/Adapter_Cycle_Metrics.csv
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/06/295f471a0a0535cd46010ed3a0ba5f/HCC1395_BL.sentieon.base_distribution_by_cycle_metrics
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/e9/213d6a9a2c0ea9fe79578aa2d24aaf/HCC1395_tumor/HCC1395_tumor.md/gc_bias_qc.altera_v3_targets_postQC_hg38.bed.tsv
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/01/15ad96b7409a285238286991136ee1/Sig_18_tissue/Sig_18_tissue.md/reads_per_target.xgen-exome-hyb-panel-v2-targets-hg38_minus_altera_v3_targets_postQC_hg38.bed.tsv
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/6f/ec080176bf81e3b2349061e1e2c87c/output/Reports/Quality_Tile_Metrics.csv
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/6d/f56c194c586e4440bf2c6ff0812049/Sig_18_Blood/Sig_18_Blood.md/saturation_qc.tsv
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/46/fb26f93276c6b35cf542925a342d8d/Sig_18_Blood.sentieon.alignment_summary_metrics
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/d1/8baba49f96d0fbbac127750a5b6684/output/Reports/Index_Hopping_Counts.csv
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/cb/1f3f5d48ef1b235d1c38bee4cab1ab/output/Reports/Adapter_Cycle_Metrics.csv
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/fe/6361504ab2227d9de1656800b41e59/output/Reports/SampleSheet.csv
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/6d/f56c194c586e4440bf2c6ff0812049/Sig_18_Blood/Sig_18_Blood.md/gc_bias_qc.xgen-exome-hyb-panel-v2-targets-hg38_AND_altera_v3_targets_postQC_hg38_AND_foresight_clarity.bed.tsv
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/6d/f56c194c586e4440bf2c6ff0812049/Sig_18_Blood/Sig_18_Blood.md/total_base_counts.FINAL_hotspot_list_07302025_hg38_sorted.bed.tsv
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/39/5b7bbc069e5f630d3518a028ec9862/Sig_18_Blood.fastp.json
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/cb/1ceac938d368ef4db43478f956b89d/Sig_18_tissue.fastp.json
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/c4/918f7df06867c246448e911c8cda89/HCC1395_BL/HCC1395_BL.md/read_qc.altera_v3_targets_coding_postQC_hg38.bed.tsv
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/6d/f56c194c586e4440bf2c6ff0812049/Sig_18_Blood/Sig_18_Blood.md/read_qc.xgen-exome-hyb-panel-v2_AND_altera_v3_probes_short_hg38_AND_cdx_spike_custom30off4x_hg38_AND_foresight_clarity_footprint.bed.tsv
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/01/15ad96b7409a285238286991136ee1/Sig_18_tissue/Sig_18_tissue.md/depth_stats.altera_v3_targets_coding_postQC_hg38.bed.tsv
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/01/15ad96b7409a285238286991136ee1/Sig_18_tissue/Sig_18_tissue.md/gc_bias_qc.FINAL_hotspot_list_07302025_hg38_sorted.bed.tsv
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/ab/caab741c6bde6e04d008eb505e3691/Sig_18_tissue.fastp.json
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/f9/3178f4f16f81dbb8bb979f240257b4/Sig_18_Blood.stats
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/ae/a2dc54cfc4098da20658c85bc8f8a3/Sig_18_tissue.fastp.json
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/01/15ad96b7409a285238286991136ee1/Sig_18_tissue/Sig_18_tissue.md/read_qc.altera_v3_targets_noncoding_postQC_hg38.bed.tsv
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/82/d2362959e3d227d336c30ffeb16d2d/output/Reports/Demultiplex_Detailed_Stats.csv
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/82/d2362959e3d227d336c30ffeb16d2d/output/Reports/Adapter_Metrics.csv
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/c4/918f7df06867c246448e911c8cda89/HCC1395_BL/HCC1395_BL.md/depth_stats.xgen-exome-hyb-panel-v2-targets-hg38_AND_altera_v3_targets_postQC_hg38_AND_foresight_clarity.bed.tsv
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/e9/213d6a9a2c0ea9fe79578aa2d24aaf/HCC1395_tumor/HCC1395_tumor.md/read_qc.altera_v3_targets_coding_postQC_hg38.bed.tsv
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/d7/a08baaccc07f3a33058aaf714067d3/Sig_18_tissue.fastp.json
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/e5/7c03da3863c3954e50630360f667e2/output/Reports/Top_Unknown_Barcodes.csv
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/92/01963e6b27b0787586b3c141208fce/Sig_18_tissue.sentieon.alignment_summary_metrics
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/f3/56eae3ca3998ddf47305a9d8863232/HCC1395_BL_xgen-exome-hyb-panel-v2-targets-hg38_AND_altera_v3_targets_postQC_hg38_AND_foresight_clarity.sentieon.hs_metrics
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/8a/cfd7777c714bd5cb6a9e5cb7fdfafa/Sig_18_Blood_xgen-exome-hyb-panel-v2-targets-hg38_AND_altera_v3_targets_postQC_hg38_AND_foresight_clarity.sentieon.hs_metrics
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/6d/f56c194c586e4440bf2c6ff0812049/Sig_18_Blood/Sig_18_Blood.md/read_qc.altera_v3_targets_coding_postQC_hg38.bed.tsv
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/4d/55dfff9c0547139c47cc93fe837d99/Sig_18_tissue.fastp.json
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/92/01963e6b27b0787586b3c141208fce/Sig_18_tissue.sentieon.quality_by_cycle_metrics
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/cb/1f3f5d48ef1b235d1c38bee4cab1ab/output/Reports/Demultiplex_Detailed_Stats.csv
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/0e/cb052eb1b199967655db98e759fa29/output/Reports/Demultiplex_Stats.csv
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/82/d2362959e3d227d336c30ffeb16d2d/output/Reports/fastq_list.csv
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/c4/918f7df06867c246448e911c8cda89/HCC1395_BL/HCC1395_BL.md/total_base_counts.altera_v3_targets_noncoding_postQC_hg38.bed.tsv
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/0c/c2b74978999e79d68b10df4e48b8f5/HCC1395_BL.md.metrics
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/f5/8d5f9e97e91c33634ed2343c5b31a1/HCC1395_tumor.sentieon.base_distribution_by_cycle_metrics
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/01/15ad96b7409a285238286991136ee1/Sig_18_tissue/Sig_18_tissue.md/total_base_counts.altera_v3_targets_noncoding_postQC_hg38.bed.tsv
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/dc/034e05dc55df5feffff45afe9c99c1/Sig_18_tissue.mosdepth.region.dist.txt
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/7b/3245aef30d9d46a1935167780269bb/Sig_18_tissue.fastp.json
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/1d/d255a8c9c4de4404e1d18d320a57d3/Sig_18_tissue.fastp.json
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/e5/7c03da3863c3954e50630360f667e2/output/Reports/Quality_Tile_Metrics.csv
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/e5/7c03da3863c3954e50630360f667e2/output/Reports/Index_Hopping_Counts.csv
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/01/15ad96b7409a285238286991136ee1/Sig_18_tissue/Sig_18_tissue.md/depth_stats.xgen-exome-hyb-panel-v2_AND_altera_v3_probes_short_hg38_AND_cdx_spike_custom30off4x_hg38_AND_foresight_clarity_footprint.bed.tsv
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/e9/213d6a9a2c0ea9fe79578aa2d24aaf/HCC1395_tumor/HCC1395_tumor.md/total_base_counts.altera_v3_targets_noncoding_postQC_hg38.bed.tsv
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/df/6d9d448d87186f2f619932e6962bf6/HCC1395_tumor.fastp.json
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/e9/213d6a9a2c0ea9fe79578aa2d24aaf/HCC1395_tumor/HCC1395_tumor.md/total_base_counts.xgen-exome-hyb-panel-v2_AND_altera_v3_probes_short_hg38_AND_cdx_spike_custom30off4x_hg38_AND_foresight_clarity_footprint.bed.tsv
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/fb/b6aa147324b412ab538f5e0603d401/Sig_18_tissue_altera_v3_targets_coding_postQC_hg38.sentieon.hs_metrics
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/77/a170f9787852f253579d1b9088aba7/output/Reports/RunInfo.xml
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/f5/8d5f9e97e91c33634ed2343c5b31a1/HCC1395_tumor.sentieon.alignment_summary_metrics
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/01/15ad96b7409a285238286991136ee1/Sig_18_tissue/Sig_18_tissue_basic_stats.tsv
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/0e/cb052eb1b199967655db98e759fa29/output/Reports/Top_Unknown_Barcodes.csv
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/0e/cb052eb1b199967655db98e759fa29/output/Reports/Adapter_Metrics.csv
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/d6/272588fad74c57019e944ac50f0b23/Sig_18_tissue_FINAL_hotspot_list_07302025_hg38_sorted.sentieon.hs_metrics
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/c4/918f7df06867c246448e911c8cda89/HCC1395_BL/HCC1395_BL.md/gc_bias_qc.xgen-exome-hyb-panel-v2_AND_altera_v3_probes_short_hg38_AND_cdx_spike_custom30off4x_hg38_AND_foresight_clarity_footprint.bed.tsv
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/01/15ad96b7409a285238286991136ee1/Sig_18_tissue/Sig_18_tissue.md/total_base_counts.altera_v3_targets_coding_postQC_hg38.bed.tsv
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/6d/f56c194c586e4440bf2c6ff0812049/Sig_18_Blood/Sig_18_Blood.md/gc_bias_qc.altera_v3_targets_postQC_hg38.bed.tsv
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/e9/213d6a9a2c0ea9fe79578aa2d24aaf/HCC1395_tumor/HCC1395_tumor.md/full_bed.bed
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/0e/cb052eb1b199967655db98e759fa29/output/Reports/Quality_Tile_Metrics.csv
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/6f/ec080176bf81e3b2349061e1e2c87c/output/Reports/Quality_Metrics.csv
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/29/4b855f233a99a266720e2fbdebdd14/Sig_18_tissue.stats
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/0e/cb052eb1b199967655db98e759fa29/output/Reports/Adapter_Cycle_Metrics.csv
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/e9/213d6a9a2c0ea9fe79578aa2d24aaf/HCC1395_tumor/HCC1395_tumor.md/contamination.tsv
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/21/b5efc1035ee9c15fb074ceb9f88c95/Sig_18_tissue_xgen-exome-hyb-panel-v2-targets-hg38_minus_altera_v3_targets_postQC_hg38.sentieon.hs_metrics
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/92/01963e6b27b0787586b3c141208fce/Sig_18_tissue.sentieon.quality_distribution_metrics
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/6d/f56c194c586e4440bf2c6ff0812049/Sig_18_Blood/Sig_18_Blood.md/gc_bias_qc.FINAL_hotspot_list_07302025_hg38_sorted.bed.tsv
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/e9/213d6a9a2c0ea9fe79578aa2d24aaf/HCC1395_tumor/HCC1395_tumor.md/total_base_counts.xgen-exome-hyb-panel-v2-targets-hg38_AND_altera_v3_targets_postQC_hg38_AND_foresight_clarity.bed.tsv
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/6d/f56c194c586e4440bf2c6ff0812049/Sig_18_Blood/Sig_18_Blood.md/reads_per_target.xgen-exome-hyb-panel-v2-targets-hg38_AND_altera_v3_targets_postQC_hg38_AND_foresight_clarity.bed.tsv
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/c4/918f7df06867c246448e911c8cda89/HCC1395_BL/HCC1395_BL.md/total_base_counts.FINAL_hotspot_list_07302025_hg38_sorted.bed.tsv
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/fe/6361504ab2227d9de1656800b41e59/output/Reports/Adapter_Metrics.csv
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/c4/918f7df06867c246448e911c8cda89/HCC1395_BL/HCC1395_BL.md/full_bed.bed
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/d1/8baba49f96d0fbbac127750a5b6684/output/Reports/Top_Unknown_Barcodes.csv
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/c4/918f7df06867c246448e911c8cda89/HCC1395_BL/HCC1395_BL.md/read_qc.FINAL_hotspot_list_07302025_hg38_sorted.bed.tsv
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/d1/8baba49f96d0fbbac127750a5b6684/output/Reports/Demultiplex_Tile_Stats.csv
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/c4/918f7df06867c246448e911c8cda89/HCC1395_BL/HCC1395_BL.md/read_qc.altera_v3_targets_noncoding_postQC_hg38.bed.tsv
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/c4/918f7df06867c246448e911c8cda89/HCC1395_BL/HCC1395_BL.md/qc_complete.txt
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/e9/213d6a9a2c0ea9fe79578aa2d24aaf/HCC1395_tumor/HCC1395_tumor.md/reads_per_target.altera_v3_targets_coding_postQC_hg38.bed.tsv
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/38/d82e646be02b48a035893d4463d451/Sig_18_Blood_altera_v3_targets_coding_postQC_hg38.sentieon.hs_metrics
==> STAGING COMPLETE (406 inputs)
/usr/local/lib/python3.13/site-packages/click/core.py:1223: UserWarning: The parameter --disable-seqtool-plugin is used more than once. Remove its duplicate as parameters should be unique.
parser = self.make_parser(ctx)
/usr/local/lib/python3.13/site-packages/click/core.py:1216: UserWarning: The parameter --disable-seqtool-plugin is used more than once. Remove its duplicate as parameters should be unique.
self.parse_args(ctx, args)
/// MultiQC v1.33
update_config | Report title: REGRESSION
hooks | Running seqtool MultiQC Plugin v0.1.0
hooks | Running seqtool MultiQC Plugin v0.1.0
version_check | MultiQC Version v1.35 now available!
file_search | Search path: /tmp/nxf.dPXcN96iO7
basic_stats | Found 4 full_basics_stats files
depth_stats | Found 4 depth stats files for all_targets
depth_stats | Found 4 depth stats files for all_probes
depth_stats | Found 4 depth stats files for boosted_depth
depth_stats | Found 4 depth stats files for coding_depth
depth_stats | Found 4 depth stats files for noncoding_depth
depth_stats | Found 4 depth stats files for non_boosted_depth
depth_stats | Found 4 depth stats files for hotspot_depth
depth_stats | Found 4 depth stats files for foresight_depth
fragment_size | Found 4 fragment size files
gc_bias | Found 4 GC bias files for all_targets
gc_bias | Found 4 GC bias files for all_probes
gc_bias | Found 4 GC bias files for boosted_depth
gc_bias | Found 4 GC bias files for coding_depth
gc_bias | Found 4 GC bias files for noncoding_depth
gc_bias | Found 4 GC bias files for non_boosted_depth
gc_bias | Found 4 GC bias files for hotspot_depth
gc_bias | Found 4 GC bias files for foresight_depth
mosdepth | Found reports for 4 samples
picard | Found 4 AlignmentSummaryMetrics reports
picard | Found 4 HsMetrics reports
picard | Found 4 InsertSizeMetrics reports
picard | Found 4 MarkDuplicates reports
picard | Found 4 QualityByCycleMetrics reports
picard | Found 4 QualityScoreDistributionMetrics reports
samtools | Found 4 stats reports
fastp | Found 32 reports
bclconvert | Found RunInfo.xml file in 75 but no Demux Stats file, skipping
bclconvert | Found RunInfo.xml file in 88 but no Demux Stats file, skipping
bclconvert | Found RunInfo.xml file in 62 but no Demux Stats file, skipping
bclconvert | Found RunInfo.xml file in 49 but no Demux Stats file, skipping
bclconvert | Found RunInfo.xml file in 101 but no Demux Stats file, skipping
bclconvert | Found RunInfo.xml file in 10 but no Demux Stats file, skipping
bclconvert | Found RunInfo.xml file in 23 but no Demux Stats file, skipping
bclconvert | Found RunInfo.xml file in 36 but no Demux Stats file, skipping
bclconvert | Found Demux Stats file in 17 but no RunInfo.xml file, skipping
bclconvert | Found Demux Stats file in 69 but no RunInfo.xml file, skipping
bclconvert | Found Demux Stats file in 56 but no RunInfo.xml file, skipping
bclconvert | Found Demux Stats file in 30 but no RunInfo.xml file, skipping
bclconvert | Found Demux Stats file in 82 but no RunInfo.xml file, skipping
bclconvert | Found Demux Stats file in 43 but no RunInfo.xml file, skipping
bclconvert | Found Demux Stats file in 95 but no RunInfo.xml file, skipping
bclconvert | Found Demux Stats file in 4 but no RunInfo.xml file, skipping
write_results | Data : REGRESSION_multiqc_report_data
write_results | Report : REGRESSION_multiqc_report.html
multiqc | MultiQC complete
/usr/local/lib/python3.13/site-packages/click/core.py:1223: UserWarning: The parameter --disable-seqtool-plugin is used more than once. Remove its duplicate as parameters should be unique.
parser = self.make_parser(ctx)
/usr/local/lib/python3.13/site-packages/click/core.py:1216: UserWarning: The parameter --disable-seqtool-plugin is used more than once. Remove its duplicate as parameters should be unique.
self.parse_args(ctx, args)