File Info

Filename
.command.err
Full Path
s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/45/9de899ed3ab42a21cd2b4e5500d5cb/.command.err
Size
1.3 KB
Attempt
mkdir -p failed for path /.config/matplotlib: [Errno 13] Permission denied: '/.config'
Matplotlib created a temporary cache directory at /tmp/matplotlib-duz3_lxm because there was an issue with the default path (/.config/matplotlib); it is highly recommended to set the MPLCONFIGDIR environment variable to a writable directory, in particular to speed up the import of Matplotlib and to better support multiprocessing.
2026-06-05 14:05:13,568 - cnv_pipe.batch.jax_config - INFO - Setting JAX backend to 'cpu'
2026-06-05 14:05:14,465 - cnv_pipe.batch.run_model - INFO - JAX devices = [CpuDevice(id=0)]
2026-06-05 14:05:14,643 - cnv_pipe.batch.run_model - INFO - Loading counts from counts_1.parquet
2026-06-05 14:05:15,660 - cnv_pipe.batch.run_model - INFO - Loaded data with 4 samples
2026-06-05 14:05:15,837 - cnv_pipe.batch.run_model - INFO - Processing cluster 1134 with 168 probes
2026-06-05 14:05:16,216 - cnv_pipe.batch.run_model.cluster1134 - INFO - Child process started for cluster 1134 with 168 probes
2026-06-05 14:06:07,369 - cnv_pipe.batch.run_model.cluster1134 - INFO - Child process finished cluster 1134. Wrote cluster_1134_samples.csv and cluster_1134_params.csv
2026-06-05 14:06:07,371 - cnv_pipe.batch.run_model - INFO - Cluster 1134 finished in 51.53 seconds. Status: SUCCESS