File Info

Filename
.command.err
Full Path
s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/cd/0a7ee56efff04559cda9ab0b16ab98/.command.err
Size
60.0 KB
Task
DAQ:CONTROL_VARIANT_CALLING:CONTROL_SOMATIC_VC:BAM_VARIANT_CALLING_SOMATIC_STRELKA:STRELKA_SOMATIC (negative_somatic_control_2;chr9_110971973-110972217.bed)
Attempt

Content

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[2026-06-05T13:59:51.159993Z] [nf-cd0a7ee56efff04559cda9ab0b16ab98-b8d59-sc6lr] [596_1] [WorkflowRunner] Initiating pyFlow run
[2026-06-05T13:59:51.160857Z] [nf-cd0a7ee56efff04559cda9ab0b16ab98-b8d59-sc6lr] [596_1] [WorkflowRunner] pyFlowClientWorkflowClass: StrelkaSomaticWorkflow
[2026-06-05T13:59:51.160868Z] [nf-cd0a7ee56efff04559cda9ab0b16ab98-b8d59-sc6lr] [596_1] [WorkflowRunner] pyFlowVersion: 1.1.20
[2026-06-05T13:59:51.160872Z] [nf-cd0a7ee56efff04559cda9ab0b16ab98-b8d59-sc6lr] [596_1] [WorkflowRunner] pythonVersion: 2.7.15.final.0
[2026-06-05T13:59:51.160876Z] [nf-cd0a7ee56efff04559cda9ab0b16ab98-b8d59-sc6lr] [596_1] [WorkflowRunner] WorkingDir: '/tmp/nxf.XXXXBM3N2W'
[2026-06-05T13:59:51.160880Z] [nf-cd0a7ee56efff04559cda9ab0b16ab98-b8d59-sc6lr] [596_1] [WorkflowRunner] ProcessCmdLine: '/var/tmp/strelka/runWorkflow.py -m local -j 8'
[2026-06-05T13:59:51.160885Z] [nf-cd0a7ee56efff04559cda9ab0b16ab98-b8d59-sc6lr] [596_1] [WorkflowRunner] [RunParameters] mode: local
[2026-06-05T13:59:51.160889Z] [nf-cd0a7ee56efff04559cda9ab0b16ab98-b8d59-sc6lr] [596_1] [WorkflowRunner] [RunParameters] nCores: 8
[2026-06-05T13:59:51.160892Z] [nf-cd0a7ee56efff04559cda9ab0b16ab98-b8d59-sc6lr] [596_1] [WorkflowRunner] [RunParameters] memMb: 3096076
[2026-06-05T13:59:51.160896Z] [nf-cd0a7ee56efff04559cda9ab0b16ab98-b8d59-sc6lr] [596_1] [WorkflowRunner] [RunParameters] dataDir: /var/tmp/strelka/workspace/pyflow.data
[2026-06-05T13:59:51.160900Z] [nf-cd0a7ee56efff04559cda9ab0b16ab98-b8d59-sc6lr] [596_1] [WorkflowRunner] [RunParameters] isDryRun: False
[2026-06-05T13:59:51.160903Z] [nf-cd0a7ee56efff04559cda9ab0b16ab98-b8d59-sc6lr] [596_1] [WorkflowRunner] [RunParameters] isContinue: False
[2026-06-05T13:59:51.160907Z] [nf-cd0a7ee56efff04559cda9ab0b16ab98-b8d59-sc6lr] [596_1] [WorkflowRunner] [RunParameters] isForceContinue: True
[2026-06-05T13:59:51.160910Z] [nf-cd0a7ee56efff04559cda9ab0b16ab98-b8d59-sc6lr] [596_1] [WorkflowRunner] [RunParameters] mailTo: ''
[2026-06-05T13:59:51.162078Z] [nf-cd0a7ee56efff04559cda9ab0b16ab98-b8d59-sc6lr] [596_1] [TaskRunner:masterWorkflow] Starting task specification for master workflow
[2026-06-05T13:59:51.162152Z] [nf-cd0a7ee56efff04559cda9ab0b16ab98-b8d59-sc6lr] [596_1] [StrelkaSomaticWorkflow] Initiating Strelka somatic workflow version: 2.9.10
[2026-06-05T13:59:51.168034Z] [nf-cd0a7ee56efff04559cda9ab0b16ab98-b8d59-sc6lr] [596_1] [WorkflowRunner] Adding sub-workflow task 'CallGenome' to master workflow
[2026-06-05T13:59:51.168892Z] [nf-cd0a7ee56efff04559cda9ab0b16ab98-b8d59-sc6lr] [596_1] [TaskManager] Launching sub-workflow task: 'CallGenome' from master workflow
[2026-06-05T13:59:51.169263Z] [nf-cd0a7ee56efff04559cda9ab0b16ab98-b8d59-sc6lr] [596_1] [TaskRunner:masterWorkflow] Finished task specification for master workflow
[2026-06-05T13:59:51.169432Z] [nf-cd0a7ee56efff04559cda9ab0b16ab98-b8d59-sc6lr] [596_1] [TaskRunner:CallGenome] Starting task specification for sub-workflow
[2026-06-05T13:59:51.169626Z] [nf-cd0a7ee56efff04559cda9ab0b16ab98-b8d59-sc6lr] [596_1] [WorkflowRunner] Adding command task 'CallGenome+makeTmpDir' to sub-workflow 'CallGenome'
[2026-06-05T13:59:51.170768Z] [nf-cd0a7ee56efff04559cda9ab0b16ab98-b8d59-sc6lr] [596_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_008_chr9_0000' to sub-workflow 'CallGenome'
[2026-06-05T13:59:51.170901Z] [nf-cd0a7ee56efff04559cda9ab0b16ab98-b8d59-sc6lr] [596_1] [TaskManager] Launching command task: 'CallGenome+makeTmpDir' from sub-workflow 'CallGenome'
[2026-06-05T13:59:51.171182Z] [nf-cd0a7ee56efff04559cda9ab0b16ab98-b8d59-sc6lr] [596_1] [WorkflowRunner] Adding command task 'CallGenome+fixVcfHeader_chromId_008_chr9_0000' to sub-workflow 'CallGenome'
[2026-06-05T13:59:51.171469Z] [nf-cd0a7ee56efff04559cda9ab0b16ab98-b8d59-sc6lr] [596_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_008_chr9_0000' to sub-workflow 'CallGenome'
[2026-06-05T13:59:51.172142Z] [nf-cd0a7ee56efff04559cda9ab0b16ab98-b8d59-sc6lr] [596_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_008_chr9_0001' to sub-workflow 'CallGenome'
[2026-06-05T13:59:51.174640Z] [nf-cd0a7ee56efff04559cda9ab0b16ab98-b8d59-sc6lr] [596_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_008_chr9_0001' to sub-workflow 'CallGenome'
[2026-06-05T13:59:51.175027Z] [nf-cd0a7ee56efff04559cda9ab0b16ab98-b8d59-sc6lr] [596_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_008_chr9_0002' to sub-workflow 'CallGenome'
[2026-06-05T13:59:51.175319Z] [nf-cd0a7ee56efff04559cda9ab0b16ab98-b8d59-sc6lr] [596_1] [TaskRunner:CallGenome+makeTmpDir] Task initiated on local node
[2026-06-05T13:59:51.175622Z] [nf-cd0a7ee56efff04559cda9ab0b16ab98-b8d59-sc6lr] [596_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_008_chr9_0002' to sub-workflow 'CallGenome'
[2026-06-05T13:59:51.176352Z] [nf-cd0a7ee56efff04559cda9ab0b16ab98-b8d59-sc6lr] [596_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_008_chr9_0003' to sub-workflow 'CallGenome'
[2026-06-05T13:59:51.176554Z] [nf-cd0a7ee56efff04559cda9ab0b16ab98-b8d59-sc6lr] [596_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_008_chr9_0003' to sub-workflow 'CallGenome'
[2026-06-05T13:59:51.176723Z] [nf-cd0a7ee56efff04559cda9ab0b16ab98-b8d59-sc6lr] [596_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_008_chr9_0004' to sub-workflow 'CallGenome'
[2026-06-05T13:59:51.176798Z] [nf-cd0a7ee56efff04559cda9ab0b16ab98-b8d59-sc6lr] [596_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_008_chr9_0004' to sub-workflow 'CallGenome'
[2026-06-05T13:59:51.176919Z] [nf-cd0a7ee56efff04559cda9ab0b16ab98-b8d59-sc6lr] [596_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_008_chr9_0005' to sub-workflow 'CallGenome'
[2026-06-05T13:59:51.176989Z] [nf-cd0a7ee56efff04559cda9ab0b16ab98-b8d59-sc6lr] [596_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_008_chr9_0005' to sub-workflow 'CallGenome'
[2026-06-05T13:59:51.177104Z] [nf-cd0a7ee56efff04559cda9ab0b16ab98-b8d59-sc6lr] [596_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_008_chr9_0006' to sub-workflow 'CallGenome'
[2026-06-05T13:59:51.177170Z] [nf-cd0a7ee56efff04559cda9ab0b16ab98-b8d59-sc6lr] [596_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_008_chr9_0006' to sub-workflow 'CallGenome'
[2026-06-05T13:59:51.177288Z] [nf-cd0a7ee56efff04559cda9ab0b16ab98-b8d59-sc6lr] [596_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_008_chr9_0007' to sub-workflow 'CallGenome'
[2026-06-05T13:59:51.177376Z] [nf-cd0a7ee56efff04559cda9ab0b16ab98-b8d59-sc6lr] [596_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_008_chr9_0007' to sub-workflow 'CallGenome'
[2026-06-05T13:59:51.177839Z] [nf-cd0a7ee56efff04559cda9ab0b16ab98-b8d59-sc6lr] [596_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_008_chr9_0008' to sub-workflow 'CallGenome'
[2026-06-05T13:59:51.178025Z] [nf-cd0a7ee56efff04559cda9ab0b16ab98-b8d59-sc6lr] [596_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_008_chr9_0008' to sub-workflow 'CallGenome'
[2026-06-05T13:59:51.178138Z] [nf-cd0a7ee56efff04559cda9ab0b16ab98-b8d59-sc6lr] [596_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_008_chr9_0009' to sub-workflow 'CallGenome'
[2026-06-05T13:59:51.178207Z] [nf-cd0a7ee56efff04559cda9ab0b16ab98-b8d59-sc6lr] [596_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_008_chr9_0009' to sub-workflow 'CallGenome'
[2026-06-05T13:59:51.178357Z] [nf-cd0a7ee56efff04559cda9ab0b16ab98-b8d59-sc6lr] [596_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_008_chr9_0010' to sub-workflow 'CallGenome'
[2026-06-05T13:59:51.178424Z] [nf-cd0a7ee56efff04559cda9ab0b16ab98-b8d59-sc6lr] [596_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_008_chr9_0010' to sub-workflow 'CallGenome'
[2026-06-05T13:59:51.178848Z] [nf-cd0a7ee56efff04559cda9ab0b16ab98-b8d59-sc6lr] [596_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_008_chr9_0011' to sub-workflow 'CallGenome'
[2026-06-05T13:59:51.178917Z] [nf-cd0a7ee56efff04559cda9ab0b16ab98-b8d59-sc6lr] [596_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_008_chr9_0011' to sub-workflow 'CallGenome'
[2026-06-05T13:59:51.179030Z] [nf-cd0a7ee56efff04559cda9ab0b16ab98-b8d59-sc6lr] [596_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_022_chrX_0000' to sub-workflow 'CallGenome'
[2026-06-05T13:59:51.179098Z] [nf-cd0a7ee56efff04559cda9ab0b16ab98-b8d59-sc6lr] [596_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_022_chrX_0000' to sub-workflow 'CallGenome'
[2026-06-05T13:59:51.179208Z] [nf-cd0a7ee56efff04559cda9ab0b16ab98-b8d59-sc6lr] [596_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_022_chrX_0001' to sub-workflow 'CallGenome'
[2026-06-05T13:59:51.179295Z] [nf-cd0a7ee56efff04559cda9ab0b16ab98-b8d59-sc6lr] [596_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_022_chrX_0001' to sub-workflow 'CallGenome'
[2026-06-05T13:59:51.179668Z] [nf-cd0a7ee56efff04559cda9ab0b16ab98-b8d59-sc6lr] [596_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_022_chrX_0002' to sub-workflow 'CallGenome'
[2026-06-05T13:59:51.179975Z] [nf-cd0a7ee56efff04559cda9ab0b16ab98-b8d59-sc6lr] [596_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_022_chrX_0002' to sub-workflow 'CallGenome'
[2026-06-05T13:59:51.180089Z] [nf-cd0a7ee56efff04559cda9ab0b16ab98-b8d59-sc6lr] [596_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_022_chrX_0003' to sub-workflow 'CallGenome'
[2026-06-05T13:59:51.180156Z] [nf-cd0a7ee56efff04559cda9ab0b16ab98-b8d59-sc6lr] [596_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_022_chrX_0003' to sub-workflow 'CallGenome'
[2026-06-05T13:59:51.180268Z] [nf-cd0a7ee56efff04559cda9ab0b16ab98-b8d59-sc6lr] [596_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_022_chrX_0004' to sub-workflow 'CallGenome'
[2026-06-05T13:59:51.180329Z] [nf-cd0a7ee56efff04559cda9ab0b16ab98-b8d59-sc6lr] [596_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_022_chrX_0004' to sub-workflow 'CallGenome'
[2026-06-05T13:59:51.180437Z] [nf-cd0a7ee56efff04559cda9ab0b16ab98-b8d59-sc6lr] [596_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_022_chrX_0005' to sub-workflow 'CallGenome'
[2026-06-05T13:59:51.180497Z] [nf-cd0a7ee56efff04559cda9ab0b16ab98-b8d59-sc6lr] [596_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_022_chrX_0005' to sub-workflow 'CallGenome'
[2026-06-05T13:59:51.180611Z] [nf-cd0a7ee56efff04559cda9ab0b16ab98-b8d59-sc6lr] [596_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_022_chrX_0006' to sub-workflow 'CallGenome'
[2026-06-05T13:59:51.180672Z] [nf-cd0a7ee56efff04559cda9ab0b16ab98-b8d59-sc6lr] [596_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_022_chrX_0006' to sub-workflow 'CallGenome'
[2026-06-05T13:59:51.180786Z] [nf-cd0a7ee56efff04559cda9ab0b16ab98-b8d59-sc6lr] [596_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_022_chrX_0007' to sub-workflow 'CallGenome'
[2026-06-05T13:59:51.180850Z] [nf-cd0a7ee56efff04559cda9ab0b16ab98-b8d59-sc6lr] [596_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_022_chrX_0007' to sub-workflow 'CallGenome'
[2026-06-05T13:59:51.180962Z] [nf-cd0a7ee56efff04559cda9ab0b16ab98-b8d59-sc6lr] [596_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_022_chrX_0008' to sub-workflow 'CallGenome'
[2026-06-05T13:59:51.181135Z] [nf-cd0a7ee56efff04559cda9ab0b16ab98-b8d59-sc6lr] [596_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_022_chrX_0008' to sub-workflow 'CallGenome'
[2026-06-05T13:59:51.181619Z] [nf-cd0a7ee56efff04559cda9ab0b16ab98-b8d59-sc6lr] [596_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_022_chrX_0009' to sub-workflow 'CallGenome'
[2026-06-05T13:59:51.181736Z] [nf-cd0a7ee56efff04559cda9ab0b16ab98-b8d59-sc6lr] [596_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_022_chrX_0009' to sub-workflow 'CallGenome'
[2026-06-05T13:59:51.181851Z] [nf-cd0a7ee56efff04559cda9ab0b16ab98-b8d59-sc6lr] [596_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_022_chrX_0010' to sub-workflow 'CallGenome'
[2026-06-05T13:59:51.181913Z] [nf-cd0a7ee56efff04559cda9ab0b16ab98-b8d59-sc6lr] [596_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_022_chrX_0010' to sub-workflow 'CallGenome'
[2026-06-05T13:59:51.182026Z] [nf-cd0a7ee56efff04559cda9ab0b16ab98-b8d59-sc6lr] [596_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_022_chrX_0011' to sub-workflow 'CallGenome'
[2026-06-05T13:59:51.182093Z] [nf-cd0a7ee56efff04559cda9ab0b16ab98-b8d59-sc6lr] [596_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_022_chrX_0011' to sub-workflow 'CallGenome'
[2026-06-05T13:59:51.182201Z] [nf-cd0a7ee56efff04559cda9ab0b16ab98-b8d59-sc6lr] [596_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_022_chrX_0012' to sub-workflow 'CallGenome'
[2026-06-05T13:59:51.182261Z] [nf-cd0a7ee56efff04559cda9ab0b16ab98-b8d59-sc6lr] [596_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_022_chrX_0012' to sub-workflow 'CallGenome'
[2026-06-05T13:59:51.182371Z] [nf-cd0a7ee56efff04559cda9ab0b16ab98-b8d59-sc6lr] [596_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_022_chrX_0013' to sub-workflow 'CallGenome'
[2026-06-05T13:59:51.182435Z] [nf-cd0a7ee56efff04559cda9ab0b16ab98-b8d59-sc6lr] [596_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_022_chrX_0013' to sub-workflow 'CallGenome'
[2026-06-05T13:59:51.182546Z] [nf-cd0a7ee56efff04559cda9ab0b16ab98-b8d59-sc6lr] [596_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_023_chrY_0000' to sub-workflow 'CallGenome'
[2026-06-05T13:59:51.182621Z] [nf-cd0a7ee56efff04559cda9ab0b16ab98-b8d59-sc6lr] [596_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_023_chrY_0000' to sub-workflow 'CallGenome'
[2026-06-05T13:59:51.183172Z] [nf-cd0a7ee56efff04559cda9ab0b16ab98-b8d59-sc6lr] [596_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_023_chrY_0001' to sub-workflow 'CallGenome'
[2026-06-05T13:59:51.183445Z] [nf-cd0a7ee56efff04559cda9ab0b16ab98-b8d59-sc6lr] [596_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_023_chrY_0001' to sub-workflow 'CallGenome'
[2026-06-05T13:59:51.183560Z] [nf-cd0a7ee56efff04559cda9ab0b16ab98-b8d59-sc6lr] [596_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_023_chrY_0002' to sub-workflow 'CallGenome'
[2026-06-05T13:59:51.183622Z] [nf-cd0a7ee56efff04559cda9ab0b16ab98-b8d59-sc6lr] [596_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_023_chrY_0002' to sub-workflow 'CallGenome'
[2026-06-05T13:59:51.183735Z] [nf-cd0a7ee56efff04559cda9ab0b16ab98-b8d59-sc6lr] [596_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_023_chrY_0003' to sub-workflow 'CallGenome'
[2026-06-05T13:59:51.183803Z] [nf-cd0a7ee56efff04559cda9ab0b16ab98-b8d59-sc6lr] [596_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_023_chrY_0003' to sub-workflow 'CallGenome'
[2026-06-05T13:59:51.198766Z] [nf-cd0a7ee56efff04559cda9ab0b16ab98-b8d59-sc6lr] [596_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_023_chrY_0004' to sub-workflow 'CallGenome'
[2026-06-05T13:59:51.198877Z] [nf-cd0a7ee56efff04559cda9ab0b16ab98-b8d59-sc6lr] [596_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_023_chrY_0004' to sub-workflow 'CallGenome'
[2026-06-05T13:59:51.198945Z] [nf-cd0a7ee56efff04559cda9ab0b16ab98-b8d59-sc6lr] [596_1] [WorkflowRunner] Adding command task 'CallGenome+completedAllGenomeSegments' to sub-workflow 'CallGenome'
[2026-06-05T13:59:51.199114Z] [nf-cd0a7ee56efff04559cda9ab0b16ab98-b8d59-sc6lr] [596_1] [WorkflowRunner] Adding command task 'CallGenome+SNV_concat_vcf' to sub-workflow 'CallGenome'
[2026-06-05T13:59:51.199186Z] [nf-cd0a7ee56efff04559cda9ab0b16ab98-b8d59-sc6lr] [596_1] [WorkflowRunner] Adding command task 'CallGenome+SNV_index_vcf' to sub-workflow 'CallGenome'
[2026-06-05T13:59:51.199272Z] [nf-cd0a7ee56efff04559cda9ab0b16ab98-b8d59-sc6lr] [596_1] [WorkflowRunner] Adding command task 'CallGenome+Indel_concat_vcf' to sub-workflow 'CallGenome'
[2026-06-05T13:59:51.199338Z] [nf-cd0a7ee56efff04559cda9ab0b16ab98-b8d59-sc6lr] [596_1] [WorkflowRunner] Adding command task 'CallGenome+Indel_index_vcf' to sub-workflow 'CallGenome'
[2026-06-05T13:59:51.199449Z] [nf-cd0a7ee56efff04559cda9ab0b16ab98-b8d59-sc6lr] [596_1] [WorkflowRunner] Adding command task 'CallGenome+mergeRunStats' to sub-workflow 'CallGenome'
[2026-06-05T13:59:51.199520Z] [nf-cd0a7ee56efff04559cda9ab0b16ab98-b8d59-sc6lr] [596_1] [WorkflowRunner] Adding command task 'CallGenome+removeTmpDir' to sub-workflow 'CallGenome'
[2026-06-05T13:59:51.199571Z] [nf-cd0a7ee56efff04559cda9ab0b16ab98-b8d59-sc6lr] [596_1] [TaskRunner:CallGenome] Finished task specification for sub-workflow
[2026-06-05T13:59:51.210378Z] [nf-cd0a7ee56efff04559cda9ab0b16ab98-b8d59-sc6lr] [596_1] [TaskManager] Completed command task: 'CallGenome+makeTmpDir' launched from sub-workflow 'CallGenome'
[2026-06-05T13:59:51.211041Z] [nf-cd0a7ee56efff04559cda9ab0b16ab98-b8d59-sc6lr] [596_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0012' from sub-workflow 'CallGenome'
[2026-06-05T13:59:51.211781Z] [nf-cd0a7ee56efff04559cda9ab0b16ab98-b8d59-sc6lr] [596_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0001' from sub-workflow 'CallGenome'
[2026-06-05T13:59:51.214876Z] [nf-cd0a7ee56efff04559cda9ab0b16ab98-b8d59-sc6lr] [596_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0000' from sub-workflow 'CallGenome'
[2026-06-05T13:59:51.215146Z] [nf-cd0a7ee56efff04559cda9ab0b16ab98-b8d59-sc6lr] [596_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_022_chrX_0012] Task initiated on local node
[2026-06-05T13:59:51.215543Z] [nf-cd0a7ee56efff04559cda9ab0b16ab98-b8d59-sc6lr] [596_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0011' from sub-workflow 'CallGenome'
[2026-06-05T13:59:51.216125Z] [nf-cd0a7ee56efff04559cda9ab0b16ab98-b8d59-sc6lr] [596_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0000' from sub-workflow 'CallGenome'
[2026-06-05T13:59:51.218606Z] [nf-cd0a7ee56efff04559cda9ab0b16ab98-b8d59-sc6lr] [596_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0006' from sub-workflow 'CallGenome'
[2026-06-05T13:59:51.219568Z] [nf-cd0a7ee56efff04559cda9ab0b16ab98-b8d59-sc6lr] [596_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_008_chr9_0001] Task initiated on local node
[2026-06-05T13:59:51.222500Z] [nf-cd0a7ee56efff04559cda9ab0b16ab98-b8d59-sc6lr] [596_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0009' from sub-workflow 'CallGenome'
[2026-06-05T13:59:51.223858Z] [nf-cd0a7ee56efff04559cda9ab0b16ab98-b8d59-sc6lr] [596_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_008_chr9_0011] Task initiated on local node
[2026-06-05T13:59:51.223953Z] [nf-cd0a7ee56efff04559cda9ab0b16ab98-b8d59-sc6lr] [596_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0001' from sub-workflow 'CallGenome'
[2026-06-05T13:59:51.233536Z] [nf-cd0a7ee56efff04559cda9ab0b16ab98-b8d59-sc6lr] [596_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_008_chr9_0000] Task initiated on local node
[2026-06-05T13:59:51.235727Z] [nf-cd0a7ee56efff04559cda9ab0b16ab98-b8d59-sc6lr] [596_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_008_chr9_0006] Task initiated on local node
[2026-06-05T13:59:51.238207Z] [nf-cd0a7ee56efff04559cda9ab0b16ab98-b8d59-sc6lr] [596_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_022_chrX_0001] Task initiated on local node
[2026-06-05T13:59:51.241538Z] [nf-cd0a7ee56efff04559cda9ab0b16ab98-b8d59-sc6lr] [596_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_008_chr9_0009] Task initiated on local node
[2026-06-05T13:59:51.340628Z] [nf-cd0a7ee56efff04559cda9ab0b16ab98-b8d59-sc6lr] [596_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0001' launched from sub-workflow 'CallGenome'
[2026-06-05T13:59:51.340721Z] [nf-cd0a7ee56efff04559cda9ab0b16ab98-b8d59-sc6lr] [596_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0006' launched from sub-workflow 'CallGenome'
[2026-06-05T13:59:51.340751Z] [nf-cd0a7ee56efff04559cda9ab0b16ab98-b8d59-sc6lr] [596_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0000' launched from sub-workflow 'CallGenome'
[2026-06-05T13:59:51.341697Z] [nf-cd0a7ee56efff04559cda9ab0b16ab98-b8d59-sc6lr] [596_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_023_chrY_0004' from sub-workflow 'CallGenome'
[2026-06-05T13:59:51.342479Z] [nf-cd0a7ee56efff04559cda9ab0b16ab98-b8d59-sc6lr] [596_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0009' from sub-workflow 'CallGenome'
[2026-06-05T13:59:51.343314Z] [nf-cd0a7ee56efff04559cda9ab0b16ab98-b8d59-sc6lr] [596_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_023_chrY_0000' from sub-workflow 'CallGenome'
[2026-06-05T13:59:51.353755Z] [nf-cd0a7ee56efff04559cda9ab0b16ab98-b8d59-sc6lr] [596_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_022_chrX_0009] Task initiated on local node
[2026-06-05T13:59:51.354586Z] [nf-cd0a7ee56efff04559cda9ab0b16ab98-b8d59-sc6lr] [596_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_023_chrY_0004] Task initiated on local node
[2026-06-05T13:59:51.356120Z] [nf-cd0a7ee56efff04559cda9ab0b16ab98-b8d59-sc6lr] [596_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_023_chrY_0000] Task initiated on local node
[2026-06-05T13:59:51.517972Z] [nf-cd0a7ee56efff04559cda9ab0b16ab98-b8d59-sc6lr] [596_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_023_chrY_0004' launched from sub-workflow 'CallGenome'
[2026-06-05T13:59:51.518891Z] [nf-cd0a7ee56efff04559cda9ab0b16ab98-b8d59-sc6lr] [596_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0004' from sub-workflow 'CallGenome'
[2026-06-05T13:59:51.522822Z] [nf-cd0a7ee56efff04559cda9ab0b16ab98-b8d59-sc6lr] [596_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_022_chrX_0004] Task initiated on local node
[2026-06-05T13:59:51.985541Z] [nf-cd0a7ee56efff04559cda9ab0b16ab98-b8d59-sc6lr] [596_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_023_chrY_0000' launched from sub-workflow 'CallGenome'
[2026-06-05T13:59:51.986432Z] [nf-cd0a7ee56efff04559cda9ab0b16ab98-b8d59-sc6lr] [596_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0006' from sub-workflow 'CallGenome'
[2026-06-05T13:59:51.990500Z] [nf-cd0a7ee56efff04559cda9ab0b16ab98-b8d59-sc6lr] [596_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_008_chr9_0006] Task initiated on local node
[2026-06-05T13:59:52.052261Z] [nf-cd0a7ee56efff04559cda9ab0b16ab98-b8d59-sc6lr] [596_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0006' launched from sub-workflow 'CallGenome'
[2026-06-05T13:59:52.053072Z] [nf-cd0a7ee56efff04559cda9ab0b16ab98-b8d59-sc6lr] [596_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_023_chrY_0002' from sub-workflow 'CallGenome'
[2026-06-05T13:59:52.056642Z] [nf-cd0a7ee56efff04559cda9ab0b16ab98-b8d59-sc6lr] [596_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_023_chrY_0002] Task initiated on local node
[2026-06-05T13:59:52.368612Z] [nf-cd0a7ee56efff04559cda9ab0b16ab98-b8d59-sc6lr] [596_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_023_chrY_0002' launched from sub-workflow 'CallGenome'
[2026-06-05T13:59:52.369468Z] [nf-cd0a7ee56efff04559cda9ab0b16ab98-b8d59-sc6lr] [596_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_023_chrY_0001' from sub-workflow 'CallGenome'
[2026-06-05T13:59:52.372991Z] [nf-cd0a7ee56efff04559cda9ab0b16ab98-b8d59-sc6lr] [596_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_023_chrY_0001] Task initiated on local node
[2026-06-05T13:59:52.484826Z] [nf-cd0a7ee56efff04559cda9ab0b16ab98-b8d59-sc6lr] [596_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0012' launched from sub-workflow 'CallGenome'
[2026-06-05T13:59:52.485733Z] [nf-cd0a7ee56efff04559cda9ab0b16ab98-b8d59-sc6lr] [596_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0012' from sub-workflow 'CallGenome'
[2026-06-05T13:59:52.489241Z] [nf-cd0a7ee56efff04559cda9ab0b16ab98-b8d59-sc6lr] [596_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_022_chrX_0012] Task initiated on local node
[2026-06-05T13:59:52.550481Z] [nf-cd0a7ee56efff04559cda9ab0b16ab98-b8d59-sc6lr] [596_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0012' launched from sub-workflow 'CallGenome'
[2026-06-05T13:59:52.551505Z] [nf-cd0a7ee56efff04559cda9ab0b16ab98-b8d59-sc6lr] [596_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0003' from sub-workflow 'CallGenome'
[2026-06-05T13:59:52.555681Z] [nf-cd0a7ee56efff04559cda9ab0b16ab98-b8d59-sc6lr] [596_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_008_chr9_0003] Task initiated on local node
[2026-06-05T13:59:52.584012Z] [nf-cd0a7ee56efff04559cda9ab0b16ab98-b8d59-sc6lr] [596_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0009' launched from sub-workflow 'CallGenome'
[2026-06-05T13:59:52.584873Z] [nf-cd0a7ee56efff04559cda9ab0b16ab98-b8d59-sc6lr] [596_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0009' from sub-workflow 'CallGenome'
[2026-06-05T13:59:52.588270Z] [nf-cd0a7ee56efff04559cda9ab0b16ab98-b8d59-sc6lr] [596_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_008_chr9_0009] Task initiated on local node
[2026-06-05T13:59:52.618537Z] [nf-cd0a7ee56efff04559cda9ab0b16ab98-b8d59-sc6lr] [596_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0003' launched from sub-workflow 'CallGenome'
[2026-06-05T13:59:52.619307Z] [nf-cd0a7ee56efff04559cda9ab0b16ab98-b8d59-sc6lr] [596_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0007' from sub-workflow 'CallGenome'
[2026-06-05T13:59:52.622148Z] [nf-cd0a7ee56efff04559cda9ab0b16ab98-b8d59-sc6lr] [596_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0009' launched from sub-workflow 'CallGenome'
[2026-06-05T13:59:52.622810Z] [nf-cd0a7ee56efff04559cda9ab0b16ab98-b8d59-sc6lr] [596_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_022_chrX_0007] Task initiated on local node
[2026-06-05T13:59:52.623134Z] [nf-cd0a7ee56efff04559cda9ab0b16ab98-b8d59-sc6lr] [596_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0002' from sub-workflow 'CallGenome'
[2026-06-05T13:59:52.627134Z] [nf-cd0a7ee56efff04559cda9ab0b16ab98-b8d59-sc6lr] [596_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_008_chr9_0002] Task initiated on local node
[2026-06-05T13:59:52.688131Z] [nf-cd0a7ee56efff04559cda9ab0b16ab98-b8d59-sc6lr] [596_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0002' launched from sub-workflow 'CallGenome'
[2026-06-05T13:59:52.688978Z] [nf-cd0a7ee56efff04559cda9ab0b16ab98-b8d59-sc6lr] [596_1] [TaskManager] Launching command task: 'CallGenome+fixVcfHeader_chromId_008_chr9_0000' from sub-workflow 'CallGenome'
[2026-06-05T13:59:52.692264Z] [nf-cd0a7ee56efff04559cda9ab0b16ab98-b8d59-sc6lr] [596_1] [TaskRunner:CallGenome+fixVcfHeader_chromId_008_chr9_0000] Task initiated on local node
[2026-06-05T13:59:52.753613Z] [nf-cd0a7ee56efff04559cda9ab0b16ab98-b8d59-sc6lr] [596_1] [TaskManager] Completed command task: 'CallGenome+fixVcfHeader_chromId_008_chr9_0000' launched from sub-workflow 'CallGenome'
[2026-06-05T13:59:52.754459Z] [nf-cd0a7ee56efff04559cda9ab0b16ab98-b8d59-sc6lr] [596_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_023_chrY_0004' from sub-workflow 'CallGenome'
[2026-06-05T13:59:52.757761Z] [nf-cd0a7ee56efff04559cda9ab0b16ab98-b8d59-sc6lr] [596_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_023_chrY_0004] Task initiated on local node
[2026-06-05T13:59:52.818982Z] [nf-cd0a7ee56efff04559cda9ab0b16ab98-b8d59-sc6lr] [596_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_023_chrY_0004' launched from sub-workflow 'CallGenome'
[2026-06-05T13:59:52.819836Z] [nf-cd0a7ee56efff04559cda9ab0b16ab98-b8d59-sc6lr] [596_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0010' from sub-workflow 'CallGenome'
[2026-06-05T13:59:52.823736Z] [nf-cd0a7ee56efff04559cda9ab0b16ab98-b8d59-sc6lr] [596_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_022_chrX_0010] Task initiated on local node
[2026-06-05T13:59:52.935024Z] [nf-cd0a7ee56efff04559cda9ab0b16ab98-b8d59-sc6lr] [596_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_023_chrY_0001' launched from sub-workflow 'CallGenome'
[2026-06-05T13:59:52.935844Z] [nf-cd0a7ee56efff04559cda9ab0b16ab98-b8d59-sc6lr] [596_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0008' from sub-workflow 'CallGenome'
[2026-06-05T13:59:52.939488Z] [nf-cd0a7ee56efff04559cda9ab0b16ab98-b8d59-sc6lr] [596_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_022_chrX_0008] Task initiated on local node
[2026-06-05T13:59:53.302050Z] [nf-cd0a7ee56efff04559cda9ab0b16ab98-b8d59-sc6lr] [596_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0008' launched from sub-workflow 'CallGenome'
[2026-06-05T13:59:53.302812Z] [nf-cd0a7ee56efff04559cda9ab0b16ab98-b8d59-sc6lr] [596_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0005' from sub-workflow 'CallGenome'
[2026-06-05T13:59:53.306314Z] [nf-cd0a7ee56efff04559cda9ab0b16ab98-b8d59-sc6lr] [596_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_022_chrX_0005] Task initiated on local node
[2026-06-05T13:59:53.404738Z] [nf-cd0a7ee56efff04559cda9ab0b16ab98-b8d59-sc6lr] [596_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_022_chrX_0000] Task initiated on local node
[2026-06-05T13:59:53.417778Z] [nf-cd0a7ee56efff04559cda9ab0b16ab98-b8d59-sc6lr] [596_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0000' launched from sub-workflow 'CallGenome'
[2026-06-05T13:59:53.417882Z] [nf-cd0a7ee56efff04559cda9ab0b16ab98-b8d59-sc6lr] [596_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0001' launched from sub-workflow 'CallGenome'
[2026-06-05T13:59:53.417911Z] [nf-cd0a7ee56efff04559cda9ab0b16ab98-b8d59-sc6lr] [596_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0007' launched from sub-workflow 'CallGenome'
[2026-06-05T13:59:53.418594Z] [nf-cd0a7ee56efff04559cda9ab0b16ab98-b8d59-sc6lr] [596_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0002' from sub-workflow 'CallGenome'
[2026-06-05T13:59:53.418983Z] [nf-cd0a7ee56efff04559cda9ab0b16ab98-b8d59-sc6lr] [596_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0013' from sub-workflow 'CallGenome'
[2026-06-05T13:59:53.419202Z] [nf-cd0a7ee56efff04559cda9ab0b16ab98-b8d59-sc6lr] [596_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0007' from sub-workflow 'CallGenome'
[2026-06-05T13:59:53.423128Z] [nf-cd0a7ee56efff04559cda9ab0b16ab98-b8d59-sc6lr] [596_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_008_chr9_0002] Task initiated on local node
[2026-06-05T13:59:53.426009Z] [nf-cd0a7ee56efff04559cda9ab0b16ab98-b8d59-sc6lr] [596_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_022_chrX_0013] Task initiated on local node
[2026-06-05T13:59:53.455948Z] [nf-cd0a7ee56efff04559cda9ab0b16ab98-b8d59-sc6lr] [596_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_022_chrX_0007] Task initiated on local node
[2026-06-05T13:59:53.484210Z] [nf-cd0a7ee56efff04559cda9ab0b16ab98-b8d59-sc6lr] [596_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0002' launched from sub-workflow 'CallGenome'
[2026-06-05T13:59:53.484301Z] [nf-cd0a7ee56efff04559cda9ab0b16ab98-b8d59-sc6lr] [596_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0004' launched from sub-workflow 'CallGenome'
[2026-06-05T13:59:53.484342Z] [nf-cd0a7ee56efff04559cda9ab0b16ab98-b8d59-sc6lr] [596_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0007' launched from sub-workflow 'CallGenome'
[2026-06-05T13:59:53.485043Z] [nf-cd0a7ee56efff04559cda9ab0b16ab98-b8d59-sc6lr] [596_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0004' from sub-workflow 'CallGenome'
[2026-06-05T13:59:53.485366Z] [nf-cd0a7ee56efff04559cda9ab0b16ab98-b8d59-sc6lr] [596_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0006' from sub-workflow 'CallGenome'
[2026-06-05T13:59:53.485873Z] [nf-cd0a7ee56efff04559cda9ab0b16ab98-b8d59-sc6lr] [596_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0008' from sub-workflow 'CallGenome'
[2026-06-05T13:59:53.490427Z] [nf-cd0a7ee56efff04559cda9ab0b16ab98-b8d59-sc6lr] [596_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_022_chrX_0004] Task initiated on local node
[2026-06-05T13:59:53.492347Z] [nf-cd0a7ee56efff04559cda9ab0b16ab98-b8d59-sc6lr] [596_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_022_chrX_0008] Task initiated on local node
[2026-06-05T13:59:53.493516Z] [nf-cd0a7ee56efff04559cda9ab0b16ab98-b8d59-sc6lr] [596_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_022_chrX_0006] Task initiated on local node
[2026-06-05T13:59:53.551529Z] [nf-cd0a7ee56efff04559cda9ab0b16ab98-b8d59-sc6lr] [596_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0008' launched from sub-workflow 'CallGenome'
[2026-06-05T13:59:53.551645Z] [nf-cd0a7ee56efff04559cda9ab0b16ab98-b8d59-sc6lr] [596_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0004' launched from sub-workflow 'CallGenome'
[2026-06-05T13:59:53.552297Z] [nf-cd0a7ee56efff04559cda9ab0b16ab98-b8d59-sc6lr] [596_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0007' from sub-workflow 'CallGenome'
[2026-06-05T13:59:53.553051Z] [nf-cd0a7ee56efff04559cda9ab0b16ab98-b8d59-sc6lr] [596_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_023_chrY_0001' from sub-workflow 'CallGenome'
[2026-06-05T13:59:53.557469Z] [nf-cd0a7ee56efff04559cda9ab0b16ab98-b8d59-sc6lr] [596_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_023_chrY_0001] Task initiated on local node
[2026-06-05T13:59:53.557929Z] [nf-cd0a7ee56efff04559cda9ab0b16ab98-b8d59-sc6lr] [596_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_008_chr9_0007] Task initiated on local node
[2026-06-05T13:59:53.620382Z] [nf-cd0a7ee56efff04559cda9ab0b16ab98-b8d59-sc6lr] [596_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_023_chrY_0001' launched from sub-workflow 'CallGenome'
[2026-06-05T13:59:53.620486Z] [nf-cd0a7ee56efff04559cda9ab0b16ab98-b8d59-sc6lr] [596_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0007' launched from sub-workflow 'CallGenome'
[2026-06-05T13:59:53.621176Z] [nf-cd0a7ee56efff04559cda9ab0b16ab98-b8d59-sc6lr] [596_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_023_chrY_0000' from sub-workflow 'CallGenome'
[2026-06-05T13:59:53.621866Z] [nf-cd0a7ee56efff04559cda9ab0b16ab98-b8d59-sc6lr] [596_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0007' from sub-workflow 'CallGenome'
[2026-06-05T13:59:53.625445Z] [nf-cd0a7ee56efff04559cda9ab0b16ab98-b8d59-sc6lr] [596_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_023_chrY_0000] Task initiated on local node
[2026-06-05T13:59:53.626766Z] [nf-cd0a7ee56efff04559cda9ab0b16ab98-b8d59-sc6lr] [596_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_008_chr9_0007] Task initiated on local node
[2026-06-05T13:59:53.686590Z] [nf-cd0a7ee56efff04559cda9ab0b16ab98-b8d59-sc6lr] [596_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0007' launched from sub-workflow 'CallGenome'
[2026-06-05T13:59:53.686718Z] [nf-cd0a7ee56efff04559cda9ab0b16ab98-b8d59-sc6lr] [596_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_023_chrY_0000' launched from sub-workflow 'CallGenome'
[2026-06-05T13:59:53.687377Z] [nf-cd0a7ee56efff04559cda9ab0b16ab98-b8d59-sc6lr] [596_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0003' from sub-workflow 'CallGenome'
[2026-06-05T13:59:53.688081Z] [nf-cd0a7ee56efff04559cda9ab0b16ab98-b8d59-sc6lr] [596_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0011' from sub-workflow 'CallGenome'
[2026-06-05T13:59:53.691986Z] [nf-cd0a7ee56efff04559cda9ab0b16ab98-b8d59-sc6lr] [596_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_022_chrX_0003] Task initiated on local node
[2026-06-05T13:59:53.693651Z] [nf-cd0a7ee56efff04559cda9ab0b16ab98-b8d59-sc6lr] [596_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_022_chrX_0011] Task initiated on local node
[2026-06-05T13:59:53.803232Z] [nf-cd0a7ee56efff04559cda9ab0b16ab98-b8d59-sc6lr] [596_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0009' launched from sub-workflow 'CallGenome'
[2026-06-05T13:59:53.803969Z] [nf-cd0a7ee56efff04559cda9ab0b16ab98-b8d59-sc6lr] [596_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0005' from sub-workflow 'CallGenome'
[2026-06-05T13:59:53.807941Z] [nf-cd0a7ee56efff04559cda9ab0b16ab98-b8d59-sc6lr] [596_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_008_chr9_0005] Task initiated on local node
[2026-06-05T13:59:53.919209Z] [nf-cd0a7ee56efff04559cda9ab0b16ab98-b8d59-sc6lr] [596_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0005' launched from sub-workflow 'CallGenome'
[2026-06-05T13:59:53.919356Z] [nf-cd0a7ee56efff04559cda9ab0b16ab98-b8d59-sc6lr] [596_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0005' launched from sub-workflow 'CallGenome'
[2026-06-05T13:59:53.919994Z] [nf-cd0a7ee56efff04559cda9ab0b16ab98-b8d59-sc6lr] [596_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0005' from sub-workflow 'CallGenome'
[2026-06-05T13:59:53.920488Z] [nf-cd0a7ee56efff04559cda9ab0b16ab98-b8d59-sc6lr] [596_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0005' from sub-workflow 'CallGenome'
[2026-06-05T13:59:53.924828Z] [nf-cd0a7ee56efff04559cda9ab0b16ab98-b8d59-sc6lr] [596_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_008_chr9_0005] Task initiated on local node
[2026-06-05T13:59:53.925902Z] [nf-cd0a7ee56efff04559cda9ab0b16ab98-b8d59-sc6lr] [596_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_022_chrX_0005] Task initiated on local node
[2026-06-05T13:59:53.954044Z] [nf-cd0a7ee56efff04559cda9ab0b16ab98-b8d59-sc6lr] [596_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0010' launched from sub-workflow 'CallGenome'
[2026-06-05T13:59:53.954816Z] [nf-cd0a7ee56efff04559cda9ab0b16ab98-b8d59-sc6lr] [596_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0000' from sub-workflow 'CallGenome'
[2026-06-05T13:59:53.958441Z] [nf-cd0a7ee56efff04559cda9ab0b16ab98-b8d59-sc6lr] [596_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_022_chrX_0000] Task initiated on local node
[2026-06-05T13:59:53.963045Z] [nf-cd0a7ee56efff04559cda9ab0b16ab98-b8d59-sc6lr] [596_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0005' launched from sub-workflow 'CallGenome'
[2026-06-05T13:59:53.963124Z] [nf-cd0a7ee56efff04559cda9ab0b16ab98-b8d59-sc6lr] [596_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0005' launched from sub-workflow 'CallGenome'
[2026-06-05T13:59:53.963752Z] [nf-cd0a7ee56efff04559cda9ab0b16ab98-b8d59-sc6lr] [596_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0010' from sub-workflow 'CallGenome'
[2026-06-05T13:59:53.964487Z] [nf-cd0a7ee56efff04559cda9ab0b16ab98-b8d59-sc6lr] [596_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0003' from sub-workflow 'CallGenome'
[2026-06-05T13:59:53.967635Z] [nf-cd0a7ee56efff04559cda9ab0b16ab98-b8d59-sc6lr] [596_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_008_chr9_0003] Task initiated on local node
[2026-06-05T13:59:53.968318Z] [nf-cd0a7ee56efff04559cda9ab0b16ab98-b8d59-sc6lr] [596_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_022_chrX_0010] Task initiated on local node
[2026-06-05T13:59:53.997627Z] [nf-cd0a7ee56efff04559cda9ab0b16ab98-b8d59-sc6lr] [596_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0000' launched from sub-workflow 'CallGenome'
[2026-06-05T13:59:53.998400Z] [nf-cd0a7ee56efff04559cda9ab0b16ab98-b8d59-sc6lr] [596_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0000' from sub-workflow 'CallGenome'
[2026-06-05T13:59:54.002038Z] [nf-cd0a7ee56efff04559cda9ab0b16ab98-b8d59-sc6lr] [596_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_008_chr9_0000] Task initiated on local node
[2026-06-05T13:59:54.002544Z] [nf-cd0a7ee56efff04559cda9ab0b16ab98-b8d59-sc6lr] [596_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0010' launched from sub-workflow 'CallGenome'
[2026-06-05T13:59:54.003205Z] [nf-cd0a7ee56efff04559cda9ab0b16ab98-b8d59-sc6lr] [596_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0010' from sub-workflow 'CallGenome'
[2026-06-05T13:59:54.003910Z] [nf-cd0a7ee56efff04559cda9ab0b16ab98-b8d59-sc6lr] [596_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0003' launched from sub-workflow 'CallGenome'
[2026-06-05T13:59:54.006270Z] [nf-cd0a7ee56efff04559cda9ab0b16ab98-b8d59-sc6lr] [596_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_023_chrY_0003' from sub-workflow 'CallGenome'
[2026-06-05T13:59:54.008813Z] [nf-cd0a7ee56efff04559cda9ab0b16ab98-b8d59-sc6lr] [596_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_008_chr9_0010] Task initiated on local node
[2026-06-05T13:59:54.010666Z] [nf-cd0a7ee56efff04559cda9ab0b16ab98-b8d59-sc6lr] [596_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_023_chrY_0003] Task initiated on local node
[2026-06-05T13:59:54.071652Z] [nf-cd0a7ee56efff04559cda9ab0b16ab98-b8d59-sc6lr] [596_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_023_chrY_0003' launched from sub-workflow 'CallGenome'
[2026-06-05T13:59:54.071765Z] [nf-cd0a7ee56efff04559cda9ab0b16ab98-b8d59-sc6lr] [596_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0000' launched from sub-workflow 'CallGenome'
[2026-06-05T13:59:54.072451Z] [nf-cd0a7ee56efff04559cda9ab0b16ab98-b8d59-sc6lr] [596_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_023_chrY_0003' from sub-workflow 'CallGenome'
[2026-06-05T13:59:54.074796Z] [nf-cd0a7ee56efff04559cda9ab0b16ab98-b8d59-sc6lr] [596_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0009' from sub-workflow 'CallGenome'
[2026-06-05T13:59:54.075857Z] [nf-cd0a7ee56efff04559cda9ab0b16ab98-b8d59-sc6lr] [596_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_023_chrY_0003] Task initiated on local node
[2026-06-05T13:59:54.078846Z] [nf-cd0a7ee56efff04559cda9ab0b16ab98-b8d59-sc6lr] [596_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_022_chrX_0009] Task initiated on local node
[2026-06-05T13:59:54.140010Z] [nf-cd0a7ee56efff04559cda9ab0b16ab98-b8d59-sc6lr] [596_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0009' launched from sub-workflow 'CallGenome'
[2026-06-05T13:59:54.140144Z] [nf-cd0a7ee56efff04559cda9ab0b16ab98-b8d59-sc6lr] [596_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_023_chrY_0003' launched from sub-workflow 'CallGenome'
[2026-06-05T13:59:54.140767Z] [nf-cd0a7ee56efff04559cda9ab0b16ab98-b8d59-sc6lr] [596_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0008' from sub-workflow 'CallGenome'
[2026-06-05T13:59:54.141049Z] [nf-cd0a7ee56efff04559cda9ab0b16ab98-b8d59-sc6lr] [596_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0002' from sub-workflow 'CallGenome'
[2026-06-05T13:59:54.145717Z] [nf-cd0a7ee56efff04559cda9ab0b16ab98-b8d59-sc6lr] [596_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_022_chrX_0002] Task initiated on local node
[2026-06-05T13:59:54.146417Z] [nf-cd0a7ee56efff04559cda9ab0b16ab98-b8d59-sc6lr] [596_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_008_chr9_0008] Task initiated on local node
[2026-06-05T13:59:54.206891Z] [nf-cd0a7ee56efff04559cda9ab0b16ab98-b8d59-sc6lr] [596_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0008' launched from sub-workflow 'CallGenome'
[2026-06-05T13:59:54.207552Z] [nf-cd0a7ee56efff04559cda9ab0b16ab98-b8d59-sc6lr] [596_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0001' from sub-workflow 'CallGenome'
[2026-06-05T13:59:54.211718Z] [nf-cd0a7ee56efff04559cda9ab0b16ab98-b8d59-sc6lr] [596_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_008_chr9_0001] Task initiated on local node
[2026-06-05T13:59:54.272277Z] [nf-cd0a7ee56efff04559cda9ab0b16ab98-b8d59-sc6lr] [596_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0001' launched from sub-workflow 'CallGenome'
[2026-06-05T13:59:54.272980Z] [nf-cd0a7ee56efff04559cda9ab0b16ab98-b8d59-sc6lr] [596_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0008' from sub-workflow 'CallGenome'
[2026-06-05T13:59:54.276463Z] [nf-cd0a7ee56efff04559cda9ab0b16ab98-b8d59-sc6lr] [596_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_008_chr9_0008] Task initiated on local node
[2026-06-05T13:59:54.337923Z] [nf-cd0a7ee56efff04559cda9ab0b16ab98-b8d59-sc6lr] [596_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0008' launched from sub-workflow 'CallGenome'
[2026-06-05T13:59:54.338614Z] [nf-cd0a7ee56efff04559cda9ab0b16ab98-b8d59-sc6lr] [596_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0004' from sub-workflow 'CallGenome'
[2026-06-05T13:59:54.342328Z] [nf-cd0a7ee56efff04559cda9ab0b16ab98-b8d59-sc6lr] [596_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_008_chr9_0004] Task initiated on local node
[2026-06-05T13:59:54.403303Z] [nf-cd0a7ee56efff04559cda9ab0b16ab98-b8d59-sc6lr] [596_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0004' launched from sub-workflow 'CallGenome'
[2026-06-05T13:59:54.404013Z] [nf-cd0a7ee56efff04559cda9ab0b16ab98-b8d59-sc6lr] [596_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0004' from sub-workflow 'CallGenome'
[2026-06-05T13:59:54.407974Z] [nf-cd0a7ee56efff04559cda9ab0b16ab98-b8d59-sc6lr] [596_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_008_chr9_0004] Task initiated on local node
[2026-06-05T13:59:54.468923Z] [nf-cd0a7ee56efff04559cda9ab0b16ab98-b8d59-sc6lr] [596_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0004' launched from sub-workflow 'CallGenome'
[2026-06-05T13:59:54.469618Z] [nf-cd0a7ee56efff04559cda9ab0b16ab98-b8d59-sc6lr] [596_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_023_chrY_0002' from sub-workflow 'CallGenome'
[2026-06-05T13:59:54.473781Z] [nf-cd0a7ee56efff04559cda9ab0b16ab98-b8d59-sc6lr] [596_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_023_chrY_0002] Task initiated on local node
[2026-06-05T13:59:54.534603Z] [nf-cd0a7ee56efff04559cda9ab0b16ab98-b8d59-sc6lr] [596_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_023_chrY_0002' launched from sub-workflow 'CallGenome'
[2026-06-05T13:59:54.535183Z] [nf-cd0a7ee56efff04559cda9ab0b16ab98-b8d59-sc6lr] [596_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0001' from sub-workflow 'CallGenome'
[2026-06-05T13:59:54.538698Z] [nf-cd0a7ee56efff04559cda9ab0b16ab98-b8d59-sc6lr] [596_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_022_chrX_0001] Task initiated on local node
[2026-06-05T13:59:54.600061Z] [nf-cd0a7ee56efff04559cda9ab0b16ab98-b8d59-sc6lr] [596_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0001' launched from sub-workflow 'CallGenome'
[2026-06-05T13:59:54.915260Z] [nf-cd0a7ee56efff04559cda9ab0b16ab98-b8d59-sc6lr] [596_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0011' launched from sub-workflow 'CallGenome'
[2026-06-05T13:59:54.915871Z] [nf-cd0a7ee56efff04559cda9ab0b16ab98-b8d59-sc6lr] [596_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0011' from sub-workflow 'CallGenome'
[2026-06-05T13:59:54.919775Z] [nf-cd0a7ee56efff04559cda9ab0b16ab98-b8d59-sc6lr] [596_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_008_chr9_0011] Task initiated on local node
[2026-06-05T13:59:54.980710Z] [nf-cd0a7ee56efff04559cda9ab0b16ab98-b8d59-sc6lr] [596_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0011' launched from sub-workflow 'CallGenome'
[2026-06-05T13:59:54.980847Z] [nf-cd0a7ee56efff04559cda9ab0b16ab98-b8d59-sc6lr] [596_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0011' launched from sub-workflow 'CallGenome'
[2026-06-05T13:59:54.981436Z] [nf-cd0a7ee56efff04559cda9ab0b16ab98-b8d59-sc6lr] [596_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0011' from sub-workflow 'CallGenome'
[2026-06-05T13:59:54.984964Z] [nf-cd0a7ee56efff04559cda9ab0b16ab98-b8d59-sc6lr] [596_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_022_chrX_0011] Task initiated on local node
[2026-06-05T13:59:54.997766Z] [nf-cd0a7ee56efff04559cda9ab0b16ab98-b8d59-sc6lr] [596_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0003' launched from sub-workflow 'CallGenome'
[2026-06-05T13:59:54.998322Z] [nf-cd0a7ee56efff04559cda9ab0b16ab98-b8d59-sc6lr] [596_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0003' from sub-workflow 'CallGenome'
[2026-06-05T13:59:55.001896Z] [nf-cd0a7ee56efff04559cda9ab0b16ab98-b8d59-sc6lr] [596_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_022_chrX_0003] Task initiated on local node
[2026-06-05T13:59:55.031074Z] [nf-cd0a7ee56efff04559cda9ab0b16ab98-b8d59-sc6lr] [596_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0011' launched from sub-workflow 'CallGenome'
[2026-06-05T13:59:55.047072Z] [nf-cd0a7ee56efff04559cda9ab0b16ab98-b8d59-sc6lr] [596_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0003' launched from sub-workflow 'CallGenome'
[2026-06-05T13:59:55.161506Z] [nf-cd0a7ee56efff04559cda9ab0b16ab98-b8d59-sc6lr] [596_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0013' launched from sub-workflow 'CallGenome'
[2026-06-05T13:59:55.162066Z] [nf-cd0a7ee56efff04559cda9ab0b16ab98-b8d59-sc6lr] [596_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0013' from sub-workflow 'CallGenome'
[2026-06-05T13:59:55.165641Z] [nf-cd0a7ee56efff04559cda9ab0b16ab98-b8d59-sc6lr] [596_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_022_chrX_0013] Task initiated on local node
[2026-06-05T13:59:55.226883Z] [nf-cd0a7ee56efff04559cda9ab0b16ab98-b8d59-sc6lr] [596_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0013' launched from sub-workflow 'CallGenome'
[2026-06-05T13:59:55.291236Z] [nf-cd0a7ee56efff04559cda9ab0b16ab98-b8d59-sc6lr] [596_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0006' launched from sub-workflow 'CallGenome'
[2026-06-05T13:59:55.291734Z] [nf-cd0a7ee56efff04559cda9ab0b16ab98-b8d59-sc6lr] [596_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0006' from sub-workflow 'CallGenome'
[2026-06-05T13:59:55.295270Z] [nf-cd0a7ee56efff04559cda9ab0b16ab98-b8d59-sc6lr] [596_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_022_chrX_0006] Task initiated on local node
[2026-06-05T13:59:55.295899Z] [nf-cd0a7ee56efff04559cda9ab0b16ab98-b8d59-sc6lr] [596_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0002' launched from sub-workflow 'CallGenome'
[2026-06-05T13:59:55.296331Z] [nf-cd0a7ee56efff04559cda9ab0b16ab98-b8d59-sc6lr] [596_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0002' from sub-workflow 'CallGenome'
[2026-06-05T13:59:55.299334Z] [nf-cd0a7ee56efff04559cda9ab0b16ab98-b8d59-sc6lr] [596_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_022_chrX_0002] Task initiated on local node
[2026-06-05T13:59:55.360963Z] [nf-cd0a7ee56efff04559cda9ab0b16ab98-b8d59-sc6lr] [596_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0002' launched from sub-workflow 'CallGenome'
[2026-06-05T13:59:55.361098Z] [nf-cd0a7ee56efff04559cda9ab0b16ab98-b8d59-sc6lr] [596_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0006' launched from sub-workflow 'CallGenome'
[2026-06-05T13:59:56.026987Z] [nf-cd0a7ee56efff04559cda9ab0b16ab98-b8d59-sc6lr] [596_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0010' launched from sub-workflow 'CallGenome'
[2026-06-05T13:59:56.027553Z] [nf-cd0a7ee56efff04559cda9ab0b16ab98-b8d59-sc6lr] [596_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0010' from sub-workflow 'CallGenome'
[2026-06-05T13:59:56.031182Z] [nf-cd0a7ee56efff04559cda9ab0b16ab98-b8d59-sc6lr] [596_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_008_chr9_0010] Task initiated on local node
[2026-06-05T13:59:56.092250Z] [nf-cd0a7ee56efff04559cda9ab0b16ab98-b8d59-sc6lr] [596_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0010' launched from sub-workflow 'CallGenome'
[2026-06-05T13:59:56.092595Z] [nf-cd0a7ee56efff04559cda9ab0b16ab98-b8d59-sc6lr] [596_1] [TaskManager] Completed command task: 'CallGenome+completedAllGenomeSegments' launched from sub-workflow 'CallGenome'
[2026-06-05T13:59:56.092776Z] [nf-cd0a7ee56efff04559cda9ab0b16ab98-b8d59-sc6lr] [596_1] [TaskManager] Launching command task: 'CallGenome+Indel_concat_vcf' from sub-workflow 'CallGenome'
[2026-06-05T13:59:56.093386Z] [nf-cd0a7ee56efff04559cda9ab0b16ab98-b8d59-sc6lr] [596_1] [TaskManager] Launching command task: 'CallGenome+mergeRunStats' from sub-workflow 'CallGenome'
[2026-06-05T13:59:56.096274Z] [nf-cd0a7ee56efff04559cda9ab0b16ab98-b8d59-sc6lr] [596_1] [TaskManager] Launching command task: 'CallGenome+SNV_concat_vcf' from sub-workflow 'CallGenome'
[2026-06-05T13:59:56.096625Z] [nf-cd0a7ee56efff04559cda9ab0b16ab98-b8d59-sc6lr] [596_1] [TaskRunner:CallGenome+Indel_concat_vcf] Task initiated on local node
[2026-06-05T13:59:56.100142Z] [nf-cd0a7ee56efff04559cda9ab0b16ab98-b8d59-sc6lr] [596_1] [TaskRunner:CallGenome+mergeRunStats] Task initiated on local node
[2026-06-05T13:59:56.101197Z] [nf-cd0a7ee56efff04559cda9ab0b16ab98-b8d59-sc6lr] [596_1] [TaskRunner:CallGenome+SNV_concat_vcf] Task initiated on local node
[2026-06-05T13:59:56.129163Z] [nf-cd0a7ee56efff04559cda9ab0b16ab98-b8d59-sc6lr] [596_1] [TaskManager] Completed command task: 'CallGenome+Indel_concat_vcf' launched from sub-workflow 'CallGenome'
[2026-06-05T13:59:56.129337Z] [nf-cd0a7ee56efff04559cda9ab0b16ab98-b8d59-sc6lr] [596_1] [TaskManager] Completed command task: 'CallGenome+mergeRunStats' launched from sub-workflow 'CallGenome'
[2026-06-05T13:59:56.129596Z] [nf-cd0a7ee56efff04559cda9ab0b16ab98-b8d59-sc6lr] [596_1] [TaskManager] Launching command task: 'CallGenome+Indel_index_vcf' from sub-workflow 'CallGenome'
[2026-06-05T13:59:56.130298Z] [nf-cd0a7ee56efff04559cda9ab0b16ab98-b8d59-sc6lr] [596_1] [TaskManager] Completed command task: 'CallGenome+SNV_concat_vcf' launched from sub-workflow 'CallGenome'
[2026-06-05T13:59:56.132536Z] [nf-cd0a7ee56efff04559cda9ab0b16ab98-b8d59-sc6lr] [596_1] [TaskManager] Launching command task: 'CallGenome+SNV_index_vcf' from sub-workflow 'CallGenome'
[2026-06-05T13:59:56.133351Z] [nf-cd0a7ee56efff04559cda9ab0b16ab98-b8d59-sc6lr] [596_1] [TaskRunner:CallGenome+Indel_index_vcf] Task initiated on local node
[2026-06-05T13:59:56.136611Z] [nf-cd0a7ee56efff04559cda9ab0b16ab98-b8d59-sc6lr] [596_1] [TaskRunner:CallGenome+SNV_index_vcf] Task initiated on local node
[2026-06-05T13:59:56.197795Z] [nf-cd0a7ee56efff04559cda9ab0b16ab98-b8d59-sc6lr] [596_1] [TaskManager] Completed command task: 'CallGenome+Indel_index_vcf' launched from sub-workflow 'CallGenome'
[2026-06-05T13:59:56.197900Z] [nf-cd0a7ee56efff04559cda9ab0b16ab98-b8d59-sc6lr] [596_1] [TaskManager] Completed command task: 'CallGenome+SNV_index_vcf' launched from sub-workflow 'CallGenome'
[2026-06-05T13:59:56.198182Z] [nf-cd0a7ee56efff04559cda9ab0b16ab98-b8d59-sc6lr] [596_1] [TaskManager] Launching command task: 'CallGenome+removeTmpDir' from sub-workflow 'CallGenome'
[2026-06-05T13:59:56.201945Z] [nf-cd0a7ee56efff04559cda9ab0b16ab98-b8d59-sc6lr] [596_1] [TaskRunner:CallGenome+removeTmpDir] Task initiated on local node
[2026-06-05T13:59:56.263044Z] [nf-cd0a7ee56efff04559cda9ab0b16ab98-b8d59-sc6lr] [596_1] [TaskManager] Completed command task: 'CallGenome+removeTmpDir' launched from sub-workflow 'CallGenome'
[2026-06-05T13:59:56.828940Z] [nf-cd0a7ee56efff04559cda9ab0b16ab98-b8d59-sc6lr] [596_1] [TaskManager] Completed sub-workflow task: 'CallGenome' launched from master workflow
[2026-06-05T14:00:01.703939Z] [nf-cd0a7ee56efff04559cda9ab0b16ab98-b8d59-sc6lr] [596_1] [WorkflowRunner] Strelka somatic workflow successfully completed.
[2026-06-05T14:00:01.703939Z] [nf-cd0a7ee56efff04559cda9ab0b16ab98-b8d59-sc6lr] [596_1] [WorkflowRunner] 
[2026-06-05T14:00:01.703939Z] [nf-cd0a7ee56efff04559cda9ab0b16ab98-b8d59-sc6lr] [596_1] [WorkflowRunner] 	workflow version: 2.9.10
[2026-06-05T14:00:01.703991Z] [nf-cd0a7ee56efff04559cda9ab0b16ab98-b8d59-sc6lr] [596_1] [WorkflowRunner] 
[2026-06-05T14:00:01.703998Z] [nf-cd0a7ee56efff04559cda9ab0b16ab98-b8d59-sc6lr] [596_1] [WorkflowRunner] Workflow successfully completed all tasks
[2026-06-05T14:00:01.704005Z] [nf-cd0a7ee56efff04559cda9ab0b16ab98-b8d59-sc6lr] [596_1] [WorkflowRunner] Elapsed time for full workflow: 10 sec