cmdline: /opt/conda/share/sentieon-202308.03-3/libexec/driver -t 31 -i Sig_18_Blood.bam -r Homo_sapiens_assembly38.fasta --algo LocusCollector --fun score_info Sig_18_Blood.md.score
This software is licensed to bgold@natera.com by Sentieon Inc.
progress 5% @chr1:162000001, elapsed 0.1s, est remaining 1.2s, peak mem 78MB, user 0.1s, sys 1.5s, output queue size 25
progress 10% @chr2:74000001, elapsed 0.1s, est remaining 1.2s, peak mem 78MB, user 0.2s, sys 3.3s, output queue size 13
progress 15% @chr2:237000001, elapsed 0.2s, est remaining 1.1s, peak mem 78MB, user 0.4s, sys 5.0s, output queue size 11
progress 20% @chr3:154000001, elapsed 0.2s, est remaining 1.0s, peak mem 78MB, user 0.5s, sys 6.8s, output queue size 17
progress 25% @chr4:118000001, elapsed 0.3s, est remaining 0.9s, peak mem 78MB, user 0.6s, sys 8.5s, output queue size 11
progress 30% @chr5:88000001, elapsed 0.4s, est remaining 0.9s, peak mem 78MB, user 0.8s, sys 10.3s, output queue size 19
progress 35% @chr6:67000001, elapsed 0.4s, est remaining 0.8s, peak mem 78MB, user 0.8s, sys 12.0s, output queue size 13
progress 40% @chr7:55000001, elapsed 0.5s, est remaining 0.7s, peak mem 78MB, user 0.9s, sys 13.8s, output queue size 21
progress 45% @chr8:61000001, elapsed 0.6s, est remaining 0.7s, peak mem 78MB, user 1.1s, sys 15.5s, output queue size 14
progress 50% @chr9:75000001, elapsed 0.6s, est remaining 0.6s, peak mem 78MB, user 1.1s, sys 17.3s, output queue size 26
progress 55% @chr10:98000001, elapsed 0.7s, est remaining 0.6s, peak mem 78MB, user 1.3s, sys 19.1s, output queue size 15
progress 60% @chr11:124000001, elapsed 0.7s, est remaining 0.5s, peak mem 78MB, user 1.3s, sys 20.9s, output queue size 14
progress 65% @chr13:16000001, elapsed 0.8s, est remaining 0.4s, peak mem 78MB, user 1.4s, sys 22.7s, output queue size 15
progress 70% @chr14:63000001, elapsed 0.9s, est remaining 0.4s, peak mem 78MB, user 1.6s, sys 24.5s, output queue size 11
progress 75% @chr16:15000001, elapsed 0.9s, est remaining 0.3s, peak mem 78MB, user 1.7s, sys 26.2s, output queue size 19
progress 80% @chr18:2000001, elapsed 1.0s, est remaining 0.2s, peak mem 78MB, user 1.8s, sys 28.0s, output queue size 18
progress 85% @chr20:23000001, elapsed 1.0s, est remaining 0.2s, peak mem 78MB, user 1.8s, sys 29.9s, output queue size 19
progress 90% @chrX:30000001, elapsed 1.1s, est remaining 0.1s, peak mem 102MB, user 2.2s, sys 31.6s, output queue size 114
progress 95% @chrY:32000001, elapsed 1.2s, est remaining 0.1s, peak mem 138MB, user 2.6s, sys 33.8s, output queue size 276
progress 100% @chr21:41000001, elapsed 1.5s, est remaining 0.0s, peak mem 170MB, user 3.2s, sys 36.9s, output queue size 3664
sw version: sentieon-genomics-202308.03
os version: Linux 6.12.88
cpu vendor: GenuineIntel
 signature: 000a06d1
  features: bfebfbff 7ffefbff
  extended: f3bfb7ef fb417ffe
  amd bits: 2c100800 00000121
     brand: Intel(R) Xeon(R) 6975P-C
threads: 31 max 384
algo: LocusCollector
license: sentieon:Dedup=31
input file size: 51298916
reads: 1001133
contig: 3367 intervals 3217346917 bases
LocusCollector::merge: 1 calls 0.031 user 0.008 sys 0.053 real
VcfLineRecordHelper::sort: 29 calls 0.000 user 0.000 sys 0.000 real
advance: 3219322 calls 1.296 user 7.664 sys 8.995 real
calc: 3219322 calls 0.269 user 5.820 sys 6.131 real
done: 1 calls 0.031 user 0.008 sys 0.053 real
execute: 1 calls 0.002 user 0.002 sys 1.502 real
fetch: 3219322 calls 0.224 user 5.606 sys 6.186 real
idle: 72 calls 0.014 user 0.025 sys 36.364 real
init: 1 calls 0.000 user 0.000 sys 0.000 real
overall: 229220352 mem 3.379 user 37.483 sys 2.559 real
cmdline: /opt/conda/share/sentieon-202308.03-3/libexec/driver -t 31 -i Sig_18_Blood.bam -r Homo_sapiens_assembly38.fasta --algo Dedup --score_info Sig_18_Blood.md.score --metrics Sig_18_Blood.md.metrics Sig_18_Blood.md.bam
This software is licensed to bgold@natera.com by Sentieon Inc.
progress 5% @chr1:164000001, elapsed 0.1s, est remaining 2.1s, peak mem 174MB, user 0.2s, sys 2.5s, output queue size 29
progress 10% @chr2:75000001, elapsed 0.2s, est remaining 1.8s, peak mem 192MB, user 0.4s, sys 5.0s, output queue size 17
progress 15% @chr2:233000001, elapsed 0.3s, est remaining 1.6s, peak mem 219MB, user 0.6s, sys 7.4s, output queue size 33
progress 20% @chr3:156000001, elapsed 0.4s, est remaining 1.5s, peak mem 231MB, user 0.8s, sys 9.7s, output queue size 19
progress 25% @chr4:116000001, elapsed 0.4s, est remaining 1.3s, peak mem 243MB, user 1.0s, sys 12.1s, output queue size 31
progress 30% @chr5:87000001, elapsed 0.5s, est remaining 1.2s, peak mem 261MB, user 1.2s, sys 14.4s, output queue size 13
progress 35% @chr6:66000001, elapsed 0.6s, est remaining 1.1s, peak mem 261MB, user 1.4s, sys 16.8s, output queue size 16
progress 40% @chr7:55000001, elapsed 0.7s, est remaining 1.0s, peak mem 267MB, user 1.6s, sys 19.1s, output queue size 5
progress 45% @chr8:56000001, elapsed 0.8s, est remaining 0.9s, peak mem 270MB, user 1.8s, sys 21.4s, output queue size 1
progress 50% @chr9:72000001, elapsed 0.9s, est remaining 0.9s, peak mem 273MB, user 1.9s, sys 23.8s, output queue size 1
progress 55% @chr10:94000001, elapsed 0.9s, est remaining 0.8s, peak mem 273MB, user 2.1s, sys 26.2s, output queue size 1
progress 60% @chr11:120000001, elapsed 1.0s, est remaining 0.7s, peak mem 273MB, user 2.3s, sys 28.5s, output queue size 3
progress 65% @chr13:11000001, elapsed 1.2s, est remaining 0.7s, peak mem 273MB, user 2.5s, sys 34.3s, output queue size 28
progress 70% @chr14:82000001, elapsed 1.4s, est remaining 0.6s, peak mem 273MB, user 2.7s, sys 40.5s, output queue size 32
progress 75% @chr16:32000001, elapsed 1.7s, est remaining 0.6s, peak mem 273MB, user 3.0s, sys 46.9s, output queue size 20
progress 80% @chr17:77000001, elapsed 1.9s, est remaining 0.5s, peak mem 273MB, user 3.2s, sys 53.1s, output queue size 11
progress 85% @chr20:22000001, elapsed 2.1s, est remaining 0.4s, peak mem 273MB, user 3.5s, sys 59.5s, output queue size 31
progress 90% @chrX:42000001, elapsed 2.4s, est remaining 0.3s, peak mem 495MB, user 6.1s, sys 63.5s, output queue size 114
progress 95% @chr21:46000001, elapsed 2.6s, est remaining 0.1s, peak mem 510MB, user 9.8s, sys 68.8s, output queue size 247
progress 100% @chr21:41000001, elapsed 3.8s, est remaining 0.0s, peak mem 519MB, user 12.8s, sys 75.2s, output queue size 3664
library Sig_18_Blood:
chimeric_paired 1027
duped 115575
duped_chimeric_paired 2
duped_paired 115574
duped_unpaired 1
optical_dup 5956
paired 999968
reads 1001133
secondary_supplementary 1151
unmapped 7
unpaired 7
optical dup clusters 5759, maxdup 3, total optical dup pairs 5956
sw version: sentieon-genomics-202308.03
os version: Linux 6.12.88
cpu vendor: GenuineIntel
 signature: 000a06d1
  features: bfebfbff 7ffefbff
  extended: f3bfb7ef fb417ffe
  amd bits: 2c100800 00000121
     brand: Intel(R) Xeon(R) 6975P-C
threads: 31 max 384
algo: Dedup
license: sentieon:Dedup=31
input file size: 51298916
reads: 1001133
contig: 3367 intervals 3217346917 bases
MateInfoByVcf::buildInfoMap: 26026 calls 0.029 user 0.036 sys 0.058 real
MateInfoByVcf::load: 26026 calls 4.097 user 1.080 sys 4.192 real
MateInfoByVcf::parse_events: 26026 calls 4.030 user 0.933 sys 3.926 real
advance: 3219322 calls 1.112 user 9.675 sys 11.020 real
calc: 3219322 calls 4.258 user 26.700 sys 32.362 real
done: 1 calls 0.001 user 0.000 sys 0.004 real
exec_no_coor: 1 calls 0.000 user 0.000 sys 0.000 real
execute: 1 calls 0.005 user 0.004 sys 3.831 real
fetch: 3219322 calls 0.385 user 8.935 sys 9.071 real
find_pairEnds: 26026 calls 0.266 user 0.007 sys 0.384 real
idle: 1152 calls 0.048 user 0.184 sys 58.621 real
init: 1 calls 0.000 user 0.000 sys 0.006 real
markDup: 26026 calls 0.826 user 0.300 sys 1.497 real
vcfadvance: 26026 calls 0.004 user 0.108 sys 0.112 real
write: 3219322 calls 2.610 user 8.770 sys 11.778 real
overall: 544280576 mem 13.389 user 76.309 sys 4.860 real