cmdline: /opt/conda/share/sentieon-202308.03-3/libexec/driver -t 31 -r Homo_sapiens_assembly38.fasta -i Sig_18_tissue.md.bam --interval xgen-exome-hyb-panel-v2-targets-hg38_AND_altera_v3_targets_postQC_hg38_AND_foresight_clarity.bed --algo QualCal -k dbsnp_146.hg38.vcf.gz -k Mills_and_1000G_gold_standard.indels.hg38.vcf.gz -k Homo_sapiens_assembly38.known_indels.vcf.gz Sig_18_tissue.table
This software is licensed to bgold@natera.com by Sentieon Inc.
progress 5% @chr1:119893964, elapsed 0.0s, est remaining 0.9s, peak mem 170MB, user 0.0s, sys 0.0s, output queue size 4057
progress 10% @chr2:19938265, elapsed 0.1s, est remaining 0.9s, peak mem 170MB, user 0.0s, sys 0.0s, output queue size 2786
progress 15% @chr2:189041586, elapsed 0.1s, est remaining 0.8s, peak mem 179MB, user 0.0s, sys 0.0s, output queue size 13183
progress 20% @chr3:97871842, elapsed 0.2s, est remaining 0.8s, peak mem 188MB, user 0.0s, sys 0.0s, output queue size 23648
progress 25% @chr4:88457270, elapsed 0.3s, est remaining 0.8s, peak mem 188MB, user 0.0s, sys 0.0s, output queue size 33912
progress 30% @chr5:147395559, elapsed 0.3s, est remaining 0.8s, peak mem 209MB, user 0.0s, sys 0.0s, output queue size 4339
progress 35% @chr6:127812883, elapsed 0.4s, est remaining 0.7s, peak mem 209MB, user 0.0s, sys 0.0s, output queue size 14326
progress 40% @chr7:128806688, elapsed 0.5s, est remaining 0.7s, peak mem 218MB, user 0.0s, sys 0.0s, output queue size 23775
progress 45% @chr9:977002, elapsed 0.5s, est remaining 0.6s, peak mem 374MB, user 0.0s, sys 0.1s, output queue size 33134
progress 50% @chr10:31520126, elapsed 0.6s, est remaining 0.6s, peak mem 407MB, user 0.0s, sys 0.1s, output queue size 43097
progress 55% @chr11:48263861, elapsed 0.6s, est remaining 0.5s, peak mem 443MB, user 0.0s, sys 0.1s, output queue size 53544
progress 60% @chr12:22478313, elapsed 0.7s, est remaining 0.5s, peak mem 449MB, user 0.0s, sys 0.1s, output queue size 63129
progress 65% @chr13:49198362, elapsed 0.8s, est remaining 0.4s, peak mem 482MB, user 0.0s, sys 0.1s, output queue size 74148
progress 70% @chr15:42682104, elapsed 0.8s, est remaining 0.4s, peak mem 488MB, user 0.0s, sys 0.1s, output queue size 84184
progress 75% @chr16:30756367, elapsed 0.9s, est remaining 0.3s, peak mem 488MB, user 0.0s, sys 0.1s, output queue size 93747
progress 80% @chr17:42348347, elapsed 1.0s, est remaining 0.2s, peak mem 497MB, user 0.0s, sys 0.1s, output queue size 104441
progress 85% @chr19:5687753, elapsed 1.0s, est remaining 0.2s, peak mem 497MB, user 0.0s, sys 0.1s, output queue size 114850
progress 90% @chr19:55708912, elapsed 1.1s, est remaining 0.1s, peak mem 506MB, user 0.0s, sys 0.1s, output queue size 124344
progress 95% @chr22:36923717, elapsed 1.6s, est remaining 0.1s, peak mem 2477MB, user 7.6s, sys 3.8s, output queue size 3226
progress 100% @chrY:57189969, elapsed 1.7s, est remaining 0.0s, peak mem 2477MB, user 7.8s, sys 3.8s, output queue size 6998
sw version: sentieon-genomics-202308.03
os version: Linux 6.12.88
cpu vendor: GenuineIntel
 signature: 000a06d1
  features: 1f8bfbff fffab20b
  extended: f1bf27eb 1b407f7e
  amd bits: 2c100800 00000121
     brand: Intel(R) Xeon(R) 6975P-C
threads: 31 max 384
algo: QualCal
license: sentieon:QualCal=31
input file size: 50047058
reads: 1001838
contig: 201779 intervals 37922265 bases
advance: 208647 calls 1.911 user 0.114 sys 2.293 real
done: 1 calls 0.263 user 0.332 sys 0.595 real
execute: 1 calls 0.006 user 0.002 sys 1.664 real
fetch_reads: 208647 calls 0.113 user 0.004 sys 0.205 real
fetch_ref: 2079 calls 0.003 user 0.013 sys 0.035 real
fetch_vcf: 2079 calls 0.836 user 0.031 sys 0.977 real
idle: 92 calls 0.002 user 0.002 sys 31.788 real
init: 1 calls 0.000 user 0.000 sys 0.000 real
update: 2294 calls 5.827 user 3.601 sys 10.308 real
overall: 2598273024 mem 11.916 user 22.802 sys 3.066 real
ls: cannot access '*.table.post': No such file or directory
ls: cannot access '*.recalibrated.bam': No such file or directory
ls: cannot access '*.recalibrated.bam.bai': No such file or directory
ls: cannot access '*.csv': No such file or directory
ls: cannot access '*.pdf': No such file or directory