File Info

Filename
.command.err
Full Path
s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/40/287d2c8ecd8d6771e4498ed0b30625/.command.err
Size
1.3 KB
Attempt
mkdir -p failed for path /.config/matplotlib: [Errno 13] Permission denied: '/.config'
Matplotlib created a temporary cache directory at /tmp/matplotlib-oee_24a3 because there was an issue with the default path (/.config/matplotlib); it is highly recommended to set the MPLCONFIGDIR environment variable to a writable directory, in particular to speed up the import of Matplotlib and to better support multiprocessing.
2026-06-05 14:04:28,875 - cnv_pipe.batch.jax_config - INFO - Setting JAX backend to 'cpu'
2026-06-05 14:04:29,718 - cnv_pipe.batch.run_model - INFO - JAX devices = [CpuDevice(id=0)]
2026-06-05 14:04:29,889 - cnv_pipe.batch.run_model - INFO - Loading counts from counts_1.parquet
2026-06-05 14:04:30,859 - cnv_pipe.batch.run_model - INFO - Loaded data with 4 samples
2026-06-05 14:04:31,033 - cnv_pipe.batch.run_model - INFO - Processing cluster 1016 with 190 probes
2026-06-05 14:04:31,410 - cnv_pipe.batch.run_model.cluster1016 - INFO - Child process started for cluster 1016 with 190 probes
2026-06-05 14:05:30,198 - cnv_pipe.batch.run_model.cluster1016 - INFO - Child process finished cluster 1016. Wrote cluster_1016_samples.csv and cluster_1016_params.csv
2026-06-05 14:05:30,199 - cnv_pipe.batch.run_model - INFO - Cluster 1016 finished in 59.17 seconds. Status: SUCCESS