File Info

Filename
.command.log
Full Path
s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/eb/764436807f84949440cbfad9c88b06/.command.log
Size
89.4 KB
Task
DAQ:CONTROL_VARIANT_CALLING:CONTROL_SOMATIC_VC:BAM_VARIANT_CALLING_SOMATIC_STRELKA:STRELKA_SOMATIC (positive_somatic_control_2;chr12_102480219-102480663.bed)
Attempt

Content

View in new tab 
  Downloading: s3://natera-platform-sandbox/pipeline-resources/ngi-igenomes/igenomes/Homo_sapiens/GATK/GRCh38/Sequence/WholeGenomeFasta/Homo_sapiens_assembly38.fasta
  Downloading: s3://natera-platform-sandbox/pipeline-resources/AIH/dna_daq/stored-normals/reference-NA12878-downsampled-500k.bam
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/eb/764436807f84949440cbfad9c88b06/.command.sh
  Downloading: s3://natera-platform-sandbox/pipeline-resources/ngi-igenomes/igenomes/Homo_sapiens/GATK/GRCh38/Annotation/intervals/altera_padded_intervals/scatter/chr12_102480219-102480663.bed.gz
  Downloading: s3://natera-platform-sandbox/pipeline-resources/ngi-igenomes/igenomes/Homo_sapiens/GATK/GRCh38/Sequence/WholeGenomeFasta/Homo_sapiens_assembly38.fasta.fai
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/50/509fa580b3dd16e8438dcd8edd0905/Sig_18_tissue.recalibrated.bam
  Downloading: s3://natera-platform-sandbox/pipeline-resources/AIH/dna_daq/stored-normals/reference-NA12878-downsampled-500k.bam.bai
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/50/509fa580b3dd16e8438dcd8edd0905/Sig_18_tissue.recalibrated.bam.bai
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/eb/764436807f84949440cbfad9c88b06/.command.run
  Downloading: s3://natera-platform-sandbox/pipeline-resources/ngi-igenomes/igenomes/Homo_sapiens/GATK/GRCh38/Annotation/intervals/altera_padded_intervals/scatter/chr12_102480219-102480663.bed.gz.tbi
==> STAGING COMPLETE (10 inputs)


Successfully created workflow run script.
To execute the workflow, run the following script and set appropriate options:

/var/tmp/strelka/runWorkflow.py
[2026-06-05T13:59:50.978412Z] [nf-eb764436807f84949440cbfad9c88b06-89432-z86sn] [622_1] [WorkflowRunner] Initiating pyFlow run
[2026-06-05T13:59:50.981812Z] [nf-eb764436807f84949440cbfad9c88b06-89432-z86sn] [622_1] [WorkflowRunner] pyFlowClientWorkflowClass: StrelkaSomaticWorkflow
[2026-06-05T13:59:50.981848Z] [nf-eb764436807f84949440cbfad9c88b06-89432-z86sn] [622_1] [WorkflowRunner] pyFlowVersion: 1.1.20
[2026-06-05T13:59:50.981855Z] [nf-eb764436807f84949440cbfad9c88b06-89432-z86sn] [622_1] [WorkflowRunner] pythonVersion: 2.7.15.final.0
[2026-06-05T13:59:50.981860Z] [nf-eb764436807f84949440cbfad9c88b06-89432-z86sn] [622_1] [WorkflowRunner] WorkingDir: '/tmp/nxf.XXXXUPaPQC'
[2026-06-05T13:59:50.981865Z] [nf-eb764436807f84949440cbfad9c88b06-89432-z86sn] [622_1] [WorkflowRunner] ProcessCmdLine: '/var/tmp/strelka/runWorkflow.py -m local -j 8'
[2026-06-05T13:59:50.981873Z] [nf-eb764436807f84949440cbfad9c88b06-89432-z86sn] [622_1] [WorkflowRunner] [RunParameters] mode: local
[2026-06-05T13:59:50.981877Z] [nf-eb764436807f84949440cbfad9c88b06-89432-z86sn] [622_1] [WorkflowRunner] [RunParameters] nCores: 8
[2026-06-05T13:59:50.981881Z] [nf-eb764436807f84949440cbfad9c88b06-89432-z86sn] [622_1] [WorkflowRunner] [RunParameters] memMb: 3096076
[2026-06-05T13:59:50.981885Z] [nf-eb764436807f84949440cbfad9c88b06-89432-z86sn] [622_1] [WorkflowRunner] [RunParameters] dataDir: /var/tmp/strelka/workspace/pyflow.data
[2026-06-05T13:59:50.981889Z] [nf-eb764436807f84949440cbfad9c88b06-89432-z86sn] [622_1] [WorkflowRunner] [RunParameters] isDryRun: False
[2026-06-05T13:59:50.981892Z] [nf-eb764436807f84949440cbfad9c88b06-89432-z86sn] [622_1] [WorkflowRunner] [RunParameters] isContinue: False
[2026-06-05T13:59:50.981896Z] [nf-eb764436807f84949440cbfad9c88b06-89432-z86sn] [622_1] [WorkflowRunner] [RunParameters] isForceContinue: True
[2026-06-05T13:59:50.981900Z] [nf-eb764436807f84949440cbfad9c88b06-89432-z86sn] [622_1] [WorkflowRunner] [RunParameters] mailTo: ''
[2026-06-05T13:59:50.982982Z] [nf-eb764436807f84949440cbfad9c88b06-89432-z86sn] [622_1] [TaskRunner:masterWorkflow] Starting task specification for master workflow
[2026-06-05T13:59:50.983045Z] [nf-eb764436807f84949440cbfad9c88b06-89432-z86sn] [622_1] [StrelkaSomaticWorkflow] Initiating Strelka somatic workflow version: 2.9.10
[2026-06-05T13:59:50.988959Z] [nf-eb764436807f84949440cbfad9c88b06-89432-z86sn] [622_1] [WorkflowRunner] Adding sub-workflow task 'CallGenome' to master workflow
[2026-06-05T13:59:50.989755Z] [nf-eb764436807f84949440cbfad9c88b06-89432-z86sn] [622_1] [TaskManager] Launching sub-workflow task: 'CallGenome' from master workflow
[2026-06-05T13:59:50.989999Z] [nf-eb764436807f84949440cbfad9c88b06-89432-z86sn] [622_1] [TaskRunner:masterWorkflow] Finished task specification for master workflow
[2026-06-05T13:59:50.990202Z] [nf-eb764436807f84949440cbfad9c88b06-89432-z86sn] [622_1] [TaskRunner:CallGenome] Starting task specification for sub-workflow
[2026-06-05T13:59:50.990389Z] [nf-eb764436807f84949440cbfad9c88b06-89432-z86sn] [622_1] [WorkflowRunner] Adding command task 'CallGenome+makeTmpDir' to sub-workflow 'CallGenome'
[2026-06-05T13:59:50.991160Z] [nf-eb764436807f84949440cbfad9c88b06-89432-z86sn] [622_1] [TaskManager] Launching command task: 'CallGenome+makeTmpDir' from sub-workflow 'CallGenome'
[2026-06-05T13:59:50.992192Z] [nf-eb764436807f84949440cbfad9c88b06-89432-z86sn] [622_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_011_chr12_0000' to sub-workflow 'CallGenome'
[2026-06-05T13:59:50.992675Z] [nf-eb764436807f84949440cbfad9c88b06-89432-z86sn] [622_1] [WorkflowRunner] Adding command task 'CallGenome+fixVcfHeader_chromId_011_chr12_0000' to sub-workflow 'CallGenome'
[2026-06-05T13:59:50.992778Z] [nf-eb764436807f84949440cbfad9c88b06-89432-z86sn] [622_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_011_chr12_0000' to sub-workflow 'CallGenome'
[2026-06-05T13:59:50.994881Z] [nf-eb764436807f84949440cbfad9c88b06-89432-z86sn] [622_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_011_chr12_0001' to sub-workflow 'CallGenome'
[2026-06-05T13:59:50.995193Z] [nf-eb764436807f84949440cbfad9c88b06-89432-z86sn] [622_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_011_chr12_0001' to sub-workflow 'CallGenome'
[2026-06-05T13:59:50.995370Z] [nf-eb764436807f84949440cbfad9c88b06-89432-z86sn] [622_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_011_chr12_0002' to sub-workflow 'CallGenome'
[2026-06-05T13:59:50.995441Z] [nf-eb764436807f84949440cbfad9c88b06-89432-z86sn] [622_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_011_chr12_0002' to sub-workflow 'CallGenome'
[2026-06-05T13:59:50.997248Z] [nf-eb764436807f84949440cbfad9c88b06-89432-z86sn] [622_1] [TaskRunner:CallGenome+makeTmpDir] Task initiated on local node
[2026-06-05T13:59:50.997420Z] [nf-eb764436807f84949440cbfad9c88b06-89432-z86sn] [622_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_011_chr12_0003' to sub-workflow 'CallGenome'
[2026-06-05T13:59:50.998072Z] [nf-eb764436807f84949440cbfad9c88b06-89432-z86sn] [622_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_011_chr12_0003' to sub-workflow 'CallGenome'
[2026-06-05T13:59:50.998323Z] [nf-eb764436807f84949440cbfad9c88b06-89432-z86sn] [622_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_011_chr12_0004' to sub-workflow 'CallGenome'
[2026-06-05T13:59:50.998409Z] [nf-eb764436807f84949440cbfad9c88b06-89432-z86sn] [622_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_011_chr12_0004' to sub-workflow 'CallGenome'
[2026-06-05T13:59:50.998538Z] [nf-eb764436807f84949440cbfad9c88b06-89432-z86sn] [622_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_011_chr12_0005' to sub-workflow 'CallGenome'
[2026-06-05T13:59:50.998611Z] [nf-eb764436807f84949440cbfad9c88b06-89432-z86sn] [622_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_011_chr12_0005' to sub-workflow 'CallGenome'
[2026-06-05T13:59:50.998738Z] [nf-eb764436807f84949440cbfad9c88b06-89432-z86sn] [622_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_011_chr12_0006' to sub-workflow 'CallGenome'
[2026-06-05T13:59:50.998809Z] [nf-eb764436807f84949440cbfad9c88b06-89432-z86sn] [622_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_011_chr12_0006' to sub-workflow 'CallGenome'
[2026-06-05T13:59:50.999072Z] [nf-eb764436807f84949440cbfad9c88b06-89432-z86sn] [622_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_011_chr12_0007' to sub-workflow 'CallGenome'
[2026-06-05T13:59:50.999661Z] [nf-eb764436807f84949440cbfad9c88b06-89432-z86sn] [622_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_011_chr12_0007' to sub-workflow 'CallGenome'
[2026-06-05T13:59:51.000374Z] [nf-eb764436807f84949440cbfad9c88b06-89432-z86sn] [622_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_011_chr12_0008' to sub-workflow 'CallGenome'
[2026-06-05T13:59:51.000451Z] [nf-eb764436807f84949440cbfad9c88b06-89432-z86sn] [622_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_011_chr12_0008' to sub-workflow 'CallGenome'
[2026-06-05T13:59:51.000568Z] [nf-eb764436807f84949440cbfad9c88b06-89432-z86sn] [622_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_011_chr12_0009' to sub-workflow 'CallGenome'
[2026-06-05T13:59:51.000635Z] [nf-eb764436807f84949440cbfad9c88b06-89432-z86sn] [622_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_011_chr12_0009' to sub-workflow 'CallGenome'
[2026-06-05T13:59:51.000750Z] [nf-eb764436807f84949440cbfad9c88b06-89432-z86sn] [622_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_011_chr12_0010' to sub-workflow 'CallGenome'
[2026-06-05T13:59:51.000814Z] [nf-eb764436807f84949440cbfad9c88b06-89432-z86sn] [622_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_011_chr12_0010' to sub-workflow 'CallGenome'
[2026-06-05T13:59:51.000947Z] [nf-eb764436807f84949440cbfad9c88b06-89432-z86sn] [622_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_011_chr12_0011' to sub-workflow 'CallGenome'
[2026-06-05T13:59:51.001017Z] [nf-eb764436807f84949440cbfad9c88b06-89432-z86sn] [622_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_011_chr12_0011' to sub-workflow 'CallGenome'
[2026-06-05T13:59:51.001176Z] [nf-eb764436807f84949440cbfad9c88b06-89432-z86sn] [622_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_012_chr13_0000' to sub-workflow 'CallGenome'
[2026-06-05T13:59:51.001252Z] [nf-eb764436807f84949440cbfad9c88b06-89432-z86sn] [622_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_012_chr13_0000' to sub-workflow 'CallGenome'
[2026-06-05T13:59:51.001363Z] [nf-eb764436807f84949440cbfad9c88b06-89432-z86sn] [622_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_012_chr13_0001' to sub-workflow 'CallGenome'
[2026-06-05T13:59:51.001452Z] [nf-eb764436807f84949440cbfad9c88b06-89432-z86sn] [622_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_012_chr13_0001' to sub-workflow 'CallGenome'
[2026-06-05T13:59:51.001921Z] [nf-eb764436807f84949440cbfad9c88b06-89432-z86sn] [622_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_012_chr13_0002' to sub-workflow 'CallGenome'
[2026-06-05T13:59:51.002416Z] [nf-eb764436807f84949440cbfad9c88b06-89432-z86sn] [622_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_012_chr13_0002' to sub-workflow 'CallGenome'
[2026-06-05T13:59:51.002541Z] [nf-eb764436807f84949440cbfad9c88b06-89432-z86sn] [622_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_012_chr13_0003' to sub-workflow 'CallGenome'
[2026-06-05T13:59:51.002607Z] [nf-eb764436807f84949440cbfad9c88b06-89432-z86sn] [622_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_012_chr13_0003' to sub-workflow 'CallGenome'
[2026-06-05T13:59:51.002720Z] [nf-eb764436807f84949440cbfad9c88b06-89432-z86sn] [622_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_012_chr13_0004' to sub-workflow 'CallGenome'
[2026-06-05T13:59:51.002785Z] [nf-eb764436807f84949440cbfad9c88b06-89432-z86sn] [622_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_012_chr13_0004' to sub-workflow 'CallGenome'
[2026-06-05T13:59:51.002897Z] [nf-eb764436807f84949440cbfad9c88b06-89432-z86sn] [622_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_012_chr13_0005' to sub-workflow 'CallGenome'
[2026-06-05T13:59:51.002959Z] [nf-eb764436807f84949440cbfad9c88b06-89432-z86sn] [622_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_012_chr13_0005' to sub-workflow 'CallGenome'
[2026-06-05T13:59:51.003075Z] [nf-eb764436807f84949440cbfad9c88b06-89432-z86sn] [622_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_012_chr13_0006' to sub-workflow 'CallGenome'
[2026-06-05T13:59:51.003134Z] [nf-eb764436807f84949440cbfad9c88b06-89432-z86sn] [622_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_012_chr13_0006' to sub-workflow 'CallGenome'
[2026-06-05T13:59:51.003311Z] [nf-eb764436807f84949440cbfad9c88b06-89432-z86sn] [622_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_012_chr13_0007' to sub-workflow 'CallGenome'
[2026-06-05T13:59:51.003387Z] [nf-eb764436807f84949440cbfad9c88b06-89432-z86sn] [622_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_012_chr13_0007' to sub-workflow 'CallGenome'
[2026-06-05T13:59:51.003527Z] [nf-eb764436807f84949440cbfad9c88b06-89432-z86sn] [622_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_012_chr13_0008' to sub-workflow 'CallGenome'
[2026-06-05T13:59:51.003600Z] [nf-eb764436807f84949440cbfad9c88b06-89432-z86sn] [622_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_012_chr13_0008' to sub-workflow 'CallGenome'
[2026-06-05T13:59:51.003724Z] [nf-eb764436807f84949440cbfad9c88b06-89432-z86sn] [622_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_012_chr13_0009' to sub-workflow 'CallGenome'
[2026-06-05T13:59:51.003862Z] [nf-eb764436807f84949440cbfad9c88b06-89432-z86sn] [622_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_012_chr13_0009' to sub-workflow 'CallGenome'
[2026-06-05T13:59:51.004380Z] [nf-eb764436807f84949440cbfad9c88b06-89432-z86sn] [622_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_013_chr14_0000' to sub-workflow 'CallGenome'
[2026-06-05T13:59:51.004921Z] [nf-eb764436807f84949440cbfad9c88b06-89432-z86sn] [622_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_013_chr14_0000' to sub-workflow 'CallGenome'
[2026-06-05T13:59:51.005054Z] [nf-eb764436807f84949440cbfad9c88b06-89432-z86sn] [622_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_013_chr14_0001' to sub-workflow 'CallGenome'
[2026-06-05T13:59:51.005128Z] [nf-eb764436807f84949440cbfad9c88b06-89432-z86sn] [622_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_013_chr14_0001' to sub-workflow 'CallGenome'
[2026-06-05T13:59:51.005237Z] [nf-eb764436807f84949440cbfad9c88b06-89432-z86sn] [622_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_013_chr14_0002' to sub-workflow 'CallGenome'
[2026-06-05T13:59:51.005302Z] [nf-eb764436807f84949440cbfad9c88b06-89432-z86sn] [622_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_013_chr14_0002' to sub-workflow 'CallGenome'
[2026-06-05T13:59:51.005449Z] [nf-eb764436807f84949440cbfad9c88b06-89432-z86sn] [622_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_013_chr14_0003' to sub-workflow 'CallGenome'
[2026-06-05T13:59:51.005514Z] [nf-eb764436807f84949440cbfad9c88b06-89432-z86sn] [622_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_013_chr14_0003' to sub-workflow 'CallGenome'
[2026-06-05T13:59:51.005669Z] [nf-eb764436807f84949440cbfad9c88b06-89432-z86sn] [622_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_013_chr14_0004' to sub-workflow 'CallGenome'
[2026-06-05T13:59:51.005742Z] [nf-eb764436807f84949440cbfad9c88b06-89432-z86sn] [622_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_013_chr14_0004' to sub-workflow 'CallGenome'
[2026-06-05T13:59:51.005852Z] [nf-eb764436807f84949440cbfad9c88b06-89432-z86sn] [622_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_013_chr14_0005' to sub-workflow 'CallGenome'
[2026-06-05T13:59:51.005922Z] [nf-eb764436807f84949440cbfad9c88b06-89432-z86sn] [622_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_013_chr14_0005' to sub-workflow 'CallGenome'
[2026-06-05T13:59:51.006149Z] [nf-eb764436807f84949440cbfad9c88b06-89432-z86sn] [622_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_013_chr14_0006' to sub-workflow 'CallGenome'
[2026-06-05T13:59:51.006214Z] [nf-eb764436807f84949440cbfad9c88b06-89432-z86sn] [622_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_013_chr14_0006' to sub-workflow 'CallGenome'
[2026-06-05T13:59:51.006517Z] [nf-eb764436807f84949440cbfad9c88b06-89432-z86sn] [622_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_013_chr14_0007' to sub-workflow 'CallGenome'
[2026-06-05T13:59:51.006585Z] [nf-eb764436807f84949440cbfad9c88b06-89432-z86sn] [622_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_013_chr14_0007' to sub-workflow 'CallGenome'
[2026-06-05T13:59:51.007231Z] [nf-eb764436807f84949440cbfad9c88b06-89432-z86sn] [622_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_013_chr14_0008' to sub-workflow 'CallGenome'
[2026-06-05T13:59:51.008530Z] [nf-eb764436807f84949440cbfad9c88b06-89432-z86sn] [622_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_013_chr14_0008' to sub-workflow 'CallGenome'
[2026-06-05T13:59:51.008795Z] [nf-eb764436807f84949440cbfad9c88b06-89432-z86sn] [622_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_014_chr15_0000' to sub-workflow 'CallGenome'
[2026-06-05T13:59:51.008881Z] [nf-eb764436807f84949440cbfad9c88b06-89432-z86sn] [622_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_014_chr15_0000' to sub-workflow 'CallGenome'
[2026-06-05T13:59:51.009085Z] [nf-eb764436807f84949440cbfad9c88b06-89432-z86sn] [622_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_014_chr15_0001' to sub-workflow 'CallGenome'
[2026-06-05T13:59:51.009164Z] [nf-eb764436807f84949440cbfad9c88b06-89432-z86sn] [622_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_014_chr15_0001' to sub-workflow 'CallGenome'
[2026-06-05T13:59:51.009328Z] [nf-eb764436807f84949440cbfad9c88b06-89432-z86sn] [622_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_014_chr15_0002' to sub-workflow 'CallGenome'
[2026-06-05T13:59:51.009667Z] [nf-eb764436807f84949440cbfad9c88b06-89432-z86sn] [622_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_014_chr15_0002' to sub-workflow 'CallGenome'
[2026-06-05T13:59:51.010210Z] [nf-eb764436807f84949440cbfad9c88b06-89432-z86sn] [622_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_014_chr15_0003' to sub-workflow 'CallGenome'
[2026-06-05T13:59:51.010788Z] [nf-eb764436807f84949440cbfad9c88b06-89432-z86sn] [622_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_014_chr15_0003' to sub-workflow 'CallGenome'
[2026-06-05T13:59:51.013713Z] [nf-eb764436807f84949440cbfad9c88b06-89432-z86sn] [622_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_014_chr15_0004' to sub-workflow 'CallGenome'
[2026-06-05T13:59:51.013859Z] [nf-eb764436807f84949440cbfad9c88b06-89432-z86sn] [622_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_014_chr15_0004' to sub-workflow 'CallGenome'
[2026-06-05T13:59:51.014015Z] [nf-eb764436807f84949440cbfad9c88b06-89432-z86sn] [622_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_014_chr15_0005' to sub-workflow 'CallGenome'
[2026-06-05T13:59:51.014095Z] [nf-eb764436807f84949440cbfad9c88b06-89432-z86sn] [622_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_014_chr15_0005' to sub-workflow 'CallGenome'
[2026-06-05T13:59:51.014219Z] [nf-eb764436807f84949440cbfad9c88b06-89432-z86sn] [622_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_014_chr15_0006' to sub-workflow 'CallGenome'
[2026-06-05T13:59:51.014358Z] [nf-eb764436807f84949440cbfad9c88b06-89432-z86sn] [622_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_014_chr15_0006' to sub-workflow 'CallGenome'
[2026-06-05T13:59:51.014705Z] [nf-eb764436807f84949440cbfad9c88b06-89432-z86sn] [622_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_014_chr15_0007' to sub-workflow 'CallGenome'
[2026-06-05T13:59:51.015385Z] [nf-eb764436807f84949440cbfad9c88b06-89432-z86sn] [622_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_014_chr15_0007' to sub-workflow 'CallGenome'
[2026-06-05T13:59:51.015520Z] [nf-eb764436807f84949440cbfad9c88b06-89432-z86sn] [622_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_014_chr15_0008' to sub-workflow 'CallGenome'
[2026-06-05T13:59:51.015588Z] [nf-eb764436807f84949440cbfad9c88b06-89432-z86sn] [622_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_014_chr15_0008' to sub-workflow 'CallGenome'
[2026-06-05T13:59:51.015698Z] [nf-eb764436807f84949440cbfad9c88b06-89432-z86sn] [622_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_015_chr16_0000' to sub-workflow 'CallGenome'
[2026-06-05T13:59:51.015772Z] [nf-eb764436807f84949440cbfad9c88b06-89432-z86sn] [622_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_015_chr16_0000' to sub-workflow 'CallGenome'
[2026-06-05T13:59:51.015909Z] [nf-eb764436807f84949440cbfad9c88b06-89432-z86sn] [622_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_015_chr16_0001' to sub-workflow 'CallGenome'
[2026-06-05T13:59:51.015985Z] [nf-eb764436807f84949440cbfad9c88b06-89432-z86sn] [622_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_015_chr16_0001' to sub-workflow 'CallGenome'
[2026-06-05T13:59:51.016097Z] [nf-eb764436807f84949440cbfad9c88b06-89432-z86sn] [622_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_015_chr16_0002' to sub-workflow 'CallGenome'
[2026-06-05T13:59:51.016161Z] [nf-eb764436807f84949440cbfad9c88b06-89432-z86sn] [622_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_015_chr16_0002' to sub-workflow 'CallGenome'
[2026-06-05T13:59:51.016275Z] [nf-eb764436807f84949440cbfad9c88b06-89432-z86sn] [622_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_015_chr16_0003' to sub-workflow 'CallGenome'
[2026-06-05T13:59:51.016405Z] [nf-eb764436807f84949440cbfad9c88b06-89432-z86sn] [622_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_015_chr16_0003' to sub-workflow 'CallGenome'
[2026-06-05T13:59:51.016883Z] [nf-eb764436807f84949440cbfad9c88b06-89432-z86sn] [622_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_015_chr16_0004' to sub-workflow 'CallGenome'
[2026-06-05T13:59:51.017812Z] [nf-eb764436807f84949440cbfad9c88b06-89432-z86sn] [622_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_015_chr16_0004' to sub-workflow 'CallGenome'
[2026-06-05T13:59:51.018015Z] [nf-eb764436807f84949440cbfad9c88b06-89432-z86sn] [622_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_015_chr16_0005' to sub-workflow 'CallGenome'
[2026-06-05T13:59:51.018087Z] [nf-eb764436807f84949440cbfad9c88b06-89432-z86sn] [622_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_015_chr16_0005' to sub-workflow 'CallGenome'
[2026-06-05T13:59:51.018204Z] [nf-eb764436807f84949440cbfad9c88b06-89432-z86sn] [622_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_015_chr16_0006' to sub-workflow 'CallGenome'
[2026-06-05T13:59:51.018274Z] [nf-eb764436807f84949440cbfad9c88b06-89432-z86sn] [622_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_015_chr16_0006' to sub-workflow 'CallGenome'
[2026-06-05T13:59:51.030284Z] [nf-eb764436807f84949440cbfad9c88b06-89432-z86sn] [622_1] [TaskManager] Completed command task: 'CallGenome+makeTmpDir' launched from sub-workflow 'CallGenome'
[2026-06-05T13:59:51.032029Z] [nf-eb764436807f84949440cbfad9c88b06-89432-z86sn] [622_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_015_chr16_0002' from sub-workflow 'CallGenome'
[2026-06-05T13:59:51.032496Z] [nf-eb764436807f84949440cbfad9c88b06-89432-z86sn] [622_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0000' from sub-workflow 'CallGenome'
[2026-06-05T13:59:51.033275Z] [nf-eb764436807f84949440cbfad9c88b06-89432-z86sn] [622_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_014_chr15_0006' from sub-workflow 'CallGenome'
[2026-06-05T13:59:51.034058Z] [nf-eb764436807f84949440cbfad9c88b06-89432-z86sn] [622_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_013_chr14_0002' from sub-workflow 'CallGenome'
[2026-06-05T13:59:51.036162Z] [nf-eb764436807f84949440cbfad9c88b06-89432-z86sn] [622_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0001' from sub-workflow 'CallGenome'
[2026-06-05T13:59:51.038031Z] [nf-eb764436807f84949440cbfad9c88b06-89432-z86sn] [622_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_014_chr15_0008' from sub-workflow 'CallGenome'
[2026-06-05T13:59:51.039682Z] [nf-eb764436807f84949440cbfad9c88b06-89432-z86sn] [622_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_015_chr16_0006' from sub-workflow 'CallGenome'
[2026-06-05T13:59:51.041547Z] [nf-eb764436807f84949440cbfad9c88b06-89432-z86sn] [622_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_015_chr16_0003' from sub-workflow 'CallGenome'
[2026-06-05T13:59:51.045472Z] [nf-eb764436807f84949440cbfad9c88b06-89432-z86sn] [622_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_014_chr15_0006] Task initiated on local node
[2026-06-05T13:59:51.052121Z] [nf-eb764436807f84949440cbfad9c88b06-89432-z86sn] [622_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_015_chr16_0002] Task initiated on local node
[2026-06-05T13:59:51.052888Z] [nf-eb764436807f84949440cbfad9c88b06-89432-z86sn] [622_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_011_chr12_0000] Task initiated on local node
[2026-06-05T13:59:51.058011Z] [nf-eb764436807f84949440cbfad9c88b06-89432-z86sn] [622_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_013_chr14_0002] Task initiated on local node
[2026-06-05T13:59:51.068578Z] [nf-eb764436807f84949440cbfad9c88b06-89432-z86sn] [622_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_011_chr12_0001] Task initiated on local node
[2026-06-05T13:59:51.072025Z] [nf-eb764436807f84949440cbfad9c88b06-89432-z86sn] [622_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_015_chr16_0006] Task initiated on local node
[2026-06-05T13:59:51.072862Z] [nf-eb764436807f84949440cbfad9c88b06-89432-z86sn] [622_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_014_chr15_0008] Task initiated on local node
[2026-06-05T13:59:51.074079Z] [nf-eb764436807f84949440cbfad9c88b06-89432-z86sn] [622_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_015_chr16_0003] Task initiated on local node
[2026-06-05T13:59:51.074643Z] [nf-eb764436807f84949440cbfad9c88b06-89432-z86sn] [622_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_015_chr16_0007' to sub-workflow 'CallGenome'
[2026-06-05T13:59:51.074874Z] [nf-eb764436807f84949440cbfad9c88b06-89432-z86sn] [622_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_015_chr16_0007' to sub-workflow 'CallGenome'
[2026-06-05T13:59:51.074959Z] [nf-eb764436807f84949440cbfad9c88b06-89432-z86sn] [622_1] [WorkflowRunner] Adding command task 'CallGenome+completedAllGenomeSegments' to sub-workflow 'CallGenome'
[2026-06-05T13:59:51.075270Z] [nf-eb764436807f84949440cbfad9c88b06-89432-z86sn] [622_1] [WorkflowRunner] Adding command task 'CallGenome+SNV_concat_vcf' to sub-workflow 'CallGenome'
[2026-06-05T13:59:51.075343Z] [nf-eb764436807f84949440cbfad9c88b06-89432-z86sn] [622_1] [WorkflowRunner] Adding command task 'CallGenome+SNV_index_vcf' to sub-workflow 'CallGenome'
[2026-06-05T13:59:51.075443Z] [nf-eb764436807f84949440cbfad9c88b06-89432-z86sn] [622_1] [WorkflowRunner] Adding command task 'CallGenome+Indel_concat_vcf' to sub-workflow 'CallGenome'
[2026-06-05T13:59:51.075510Z] [nf-eb764436807f84949440cbfad9c88b06-89432-z86sn] [622_1] [WorkflowRunner] Adding command task 'CallGenome+Indel_index_vcf' to sub-workflow 'CallGenome'
[2026-06-05T13:59:51.075648Z] [nf-eb764436807f84949440cbfad9c88b06-89432-z86sn] [622_1] [WorkflowRunner] Adding command task 'CallGenome+mergeRunStats' to sub-workflow 'CallGenome'
[2026-06-05T13:59:51.075718Z] [nf-eb764436807f84949440cbfad9c88b06-89432-z86sn] [622_1] [WorkflowRunner] Adding command task 'CallGenome+removeTmpDir' to sub-workflow 'CallGenome'
[2026-06-05T13:59:51.075770Z] [nf-eb764436807f84949440cbfad9c88b06-89432-z86sn] [622_1] [TaskRunner:CallGenome] Finished task specification for sub-workflow
[2026-06-05T13:59:51.146366Z] [nf-eb764436807f84949440cbfad9c88b06-89432-z86sn] [622_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0000' launched from sub-workflow 'CallGenome'
[2026-06-05T13:59:51.147566Z] [nf-eb764436807f84949440cbfad9c88b06-89432-z86sn] [622_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_013_chr14_0008' from sub-workflow 'CallGenome'
[2026-06-05T13:59:51.152362Z] [nf-eb764436807f84949440cbfad9c88b06-89432-z86sn] [622_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_013_chr14_0008] Task initiated on local node
[2026-06-05T13:59:51.180946Z] [nf-eb764436807f84949440cbfad9c88b06-89432-z86sn] [622_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0001' launched from sub-workflow 'CallGenome'
[2026-06-05T13:59:51.181062Z] [nf-eb764436807f84949440cbfad9c88b06-89432-z86sn] [622_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_015_chr16_0006' launched from sub-workflow 'CallGenome'
[2026-06-05T13:59:51.182751Z] [nf-eb764436807f84949440cbfad9c88b06-89432-z86sn] [622_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0008' from sub-workflow 'CallGenome'
[2026-06-05T13:59:51.183453Z] [nf-eb764436807f84949440cbfad9c88b06-89432-z86sn] [622_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0011' from sub-workflow 'CallGenome'
[2026-06-05T13:59:51.184577Z] [nf-eb764436807f84949440cbfad9c88b06-89432-z86sn] [622_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_015_chr16_0003' launched from sub-workflow 'CallGenome'
[2026-06-05T13:59:51.188445Z] [nf-eb764436807f84949440cbfad9c88b06-89432-z86sn] [622_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_011_chr12_0008] Task initiated on local node
[2026-06-05T13:59:51.189746Z] [nf-eb764436807f84949440cbfad9c88b06-89432-z86sn] [622_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_012_chr13_0009' from sub-workflow 'CallGenome'
[2026-06-05T13:59:51.190100Z] [nf-eb764436807f84949440cbfad9c88b06-89432-z86sn] [622_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_011_chr12_0011] Task initiated on local node
[2026-06-05T13:59:51.193148Z] [nf-eb764436807f84949440cbfad9c88b06-89432-z86sn] [622_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_012_chr13_0009] Task initiated on local node
[2026-06-05T13:59:51.304673Z] [nf-eb764436807f84949440cbfad9c88b06-89432-z86sn] [622_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0008' launched from sub-workflow 'CallGenome'
[2026-06-05T13:59:51.305903Z] [nf-eb764436807f84949440cbfad9c88b06-89432-z86sn] [622_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_015_chr16_0001' from sub-workflow 'CallGenome'
[2026-06-05T13:59:51.311064Z] [nf-eb764436807f84949440cbfad9c88b06-89432-z86sn] [622_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_015_chr16_0001] Task initiated on local node
[2026-06-05T13:59:51.822786Z] [nf-eb764436807f84949440cbfad9c88b06-89432-z86sn] [622_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_015_chr16_0002' launched from sub-workflow 'CallGenome'
[2026-06-05T13:59:51.824692Z] [nf-eb764436807f84949440cbfad9c88b06-89432-z86sn] [622_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_015_chr16_0002' from sub-workflow 'CallGenome'
[2026-06-05T13:59:51.828308Z] [nf-eb764436807f84949440cbfad9c88b06-89432-z86sn] [622_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_015_chr16_0002] Task initiated on local node
[2026-06-05T13:59:51.889421Z] [nf-eb764436807f84949440cbfad9c88b06-89432-z86sn] [622_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_015_chr16_0002' launched from sub-workflow 'CallGenome'
[2026-06-05T13:59:51.891197Z] [nf-eb764436807f84949440cbfad9c88b06-89432-z86sn] [622_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_012_chr13_0001' from sub-workflow 'CallGenome'
[2026-06-05T13:59:51.895095Z] [nf-eb764436807f84949440cbfad9c88b06-89432-z86sn] [622_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_012_chr13_0001] Task initiated on local node
[2026-06-05T13:59:52.507183Z] [nf-eb764436807f84949440cbfad9c88b06-89432-z86sn] [622_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_013_chr14_0002' launched from sub-workflow 'CallGenome'
[2026-06-05T13:59:52.508782Z] [nf-eb764436807f84949440cbfad9c88b06-89432-z86sn] [622_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_014_chr15_0000' from sub-workflow 'CallGenome'
[2026-06-05T13:59:52.512871Z] [nf-eb764436807f84949440cbfad9c88b06-89432-z86sn] [622_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_014_chr15_0000] Task initiated on local node
[2026-06-05T13:59:52.516936Z] [nf-eb764436807f84949440cbfad9c88b06-89432-z86sn] [622_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_014_chr15_0008' launched from sub-workflow 'CallGenome'
[2026-06-05T13:59:52.518271Z] [nf-eb764436807f84949440cbfad9c88b06-89432-z86sn] [622_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_013_chr14_0004' from sub-workflow 'CallGenome'
[2026-06-05T13:59:52.521751Z] [nf-eb764436807f84949440cbfad9c88b06-89432-z86sn] [622_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_013_chr14_0004] Task initiated on local node
[2026-06-05T13:59:52.583073Z] [nf-eb764436807f84949440cbfad9c88b06-89432-z86sn] [622_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_014_chr15_0000' launched from sub-workflow 'CallGenome'
[2026-06-05T13:59:52.584726Z] [nf-eb764436807f84949440cbfad9c88b06-89432-z86sn] [622_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_012_chr13_0002' from sub-workflow 'CallGenome'
[2026-06-05T13:59:52.588886Z] [nf-eb764436807f84949440cbfad9c88b06-89432-z86sn] [622_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_012_chr13_0002] Task initiated on local node
[2026-06-05T13:59:52.749827Z] [nf-eb764436807f84949440cbfad9c88b06-89432-z86sn] [622_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_012_chr13_0001' launched from sub-workflow 'CallGenome'
[2026-06-05T13:59:52.751470Z] [nf-eb764436807f84949440cbfad9c88b06-89432-z86sn] [622_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_012_chr13_0004' from sub-workflow 'CallGenome'
[2026-06-05T13:59:52.755154Z] [nf-eb764436807f84949440cbfad9c88b06-89432-z86sn] [622_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_012_chr13_0004] Task initiated on local node
[2026-06-05T13:59:52.783974Z] [nf-eb764436807f84949440cbfad9c88b06-89432-z86sn] [622_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_012_chr13_0009' launched from sub-workflow 'CallGenome'
[2026-06-05T13:59:52.785334Z] [nf-eb764436807f84949440cbfad9c88b06-89432-z86sn] [622_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_014_chr15_0000' from sub-workflow 'CallGenome'
[2026-06-05T13:59:52.788850Z] [nf-eb764436807f84949440cbfad9c88b06-89432-z86sn] [622_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_014_chr15_0000] Task initiated on local node
[2026-06-05T13:59:52.849876Z] [nf-eb764436807f84949440cbfad9c88b06-89432-z86sn] [622_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_014_chr15_0000' launched from sub-workflow 'CallGenome'
[2026-06-05T13:59:52.851629Z] [nf-eb764436807f84949440cbfad9c88b06-89432-z86sn] [622_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0006' from sub-workflow 'CallGenome'
[2026-06-05T13:59:52.855318Z] [nf-eb764436807f84949440cbfad9c88b06-89432-z86sn] [622_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_011_chr12_0006] Task initiated on local node
[2026-06-05T13:59:52.916111Z] [nf-eb764436807f84949440cbfad9c88b06-89432-z86sn] [622_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0006' launched from sub-workflow 'CallGenome'
[2026-06-05T13:59:52.917627Z] [nf-eb764436807f84949440cbfad9c88b06-89432-z86sn] [622_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_014_chr15_0005' from sub-workflow 'CallGenome'
[2026-06-05T13:59:52.921894Z] [nf-eb764436807f84949440cbfad9c88b06-89432-z86sn] [622_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_014_chr15_0005] Task initiated on local node
[2026-06-05T13:59:53.283233Z] [nf-eb764436807f84949440cbfad9c88b06-89432-z86sn] [622_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0011' launched from sub-workflow 'CallGenome'
[2026-06-05T13:59:53.284841Z] [nf-eb764436807f84949440cbfad9c88b06-89432-z86sn] [622_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_012_chr13_0006' from sub-workflow 'CallGenome'
[2026-06-05T13:59:53.289197Z] [nf-eb764436807f84949440cbfad9c88b06-89432-z86sn] [622_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_012_chr13_0006] Task initiated on local node
[2026-06-05T13:59:53.450172Z] [nf-eb764436807f84949440cbfad9c88b06-89432-z86sn] [622_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_015_chr16_0001' launched from sub-workflow 'CallGenome'
[2026-06-05T13:59:53.452044Z] [nf-eb764436807f84949440cbfad9c88b06-89432-z86sn] [622_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0010' from sub-workflow 'CallGenome'
[2026-06-05T13:59:53.455727Z] [nf-eb764436807f84949440cbfad9c88b06-89432-z86sn] [622_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_011_chr12_0010] Task initiated on local node
[2026-06-05T13:59:53.566819Z] [nf-eb764436807f84949440cbfad9c88b06-89432-z86sn] [622_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_013_chr14_0008' launched from sub-workflow 'CallGenome'
[2026-06-05T13:59:53.568033Z] [nf-eb764436807f84949440cbfad9c88b06-89432-z86sn] [622_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_015_chr16_0001' from sub-workflow 'CallGenome'
[2026-06-05T13:59:53.571728Z] [nf-eb764436807f84949440cbfad9c88b06-89432-z86sn] [622_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_015_chr16_0001] Task initiated on local node
[2026-06-05T13:59:53.632760Z] [nf-eb764436807f84949440cbfad9c88b06-89432-z86sn] [622_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_015_chr16_0001' launched from sub-workflow 'CallGenome'
[2026-06-05T13:59:53.633948Z] [nf-eb764436807f84949440cbfad9c88b06-89432-z86sn] [622_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_013_chr14_0002' from sub-workflow 'CallGenome'
[2026-06-05T13:59:53.637655Z] [nf-eb764436807f84949440cbfad9c88b06-89432-z86sn] [622_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_013_chr14_0002] Task initiated on local node
[2026-06-05T13:59:53.698853Z] [nf-eb764436807f84949440cbfad9c88b06-89432-z86sn] [622_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_013_chr14_0002' launched from sub-workflow 'CallGenome'
[2026-06-05T13:59:53.700165Z] [nf-eb764436807f84949440cbfad9c88b06-89432-z86sn] [622_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_015_chr16_0007' from sub-workflow 'CallGenome'
[2026-06-05T13:59:53.703626Z] [nf-eb764436807f84949440cbfad9c88b06-89432-z86sn] [622_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_015_chr16_0007] Task initiated on local node
[2026-06-05T13:59:53.764890Z] [nf-eb764436807f84949440cbfad9c88b06-89432-z86sn] [622_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_015_chr16_0007' launched from sub-workflow 'CallGenome'
[2026-06-05T13:59:53.766100Z] [nf-eb764436807f84949440cbfad9c88b06-89432-z86sn] [622_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_012_chr13_0007' from sub-workflow 'CallGenome'
[2026-06-05T13:59:53.769931Z] [nf-eb764436807f84949440cbfad9c88b06-89432-z86sn] [622_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_012_chr13_0007] Task initiated on local node
[2026-06-05T13:59:53.881397Z] [nf-eb764436807f84949440cbfad9c88b06-89432-z86sn] [622_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_014_chr15_0006' launched from sub-workflow 'CallGenome'
[2026-06-05T13:59:53.882525Z] [nf-eb764436807f84949440cbfad9c88b06-89432-z86sn] [622_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_014_chr15_0006' from sub-workflow 'CallGenome'
[2026-06-05T13:59:53.886085Z] [nf-eb764436807f84949440cbfad9c88b06-89432-z86sn] [622_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_014_chr15_0006] Task initiated on local node
[2026-06-05T13:59:53.915196Z] [nf-eb764436807f84949440cbfad9c88b06-89432-z86sn] [622_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_012_chr13_0007' launched from sub-workflow 'CallGenome'
[2026-06-05T13:59:53.916352Z] [nf-eb764436807f84949440cbfad9c88b06-89432-z86sn] [622_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_013_chr14_0001' from sub-workflow 'CallGenome'
[2026-06-05T13:59:53.919780Z] [nf-eb764436807f84949440cbfad9c88b06-89432-z86sn] [622_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_013_chr14_0001] Task initiated on local node
[2026-06-05T13:59:53.920475Z] [nf-eb764436807f84949440cbfad9c88b06-89432-z86sn] [622_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_014_chr15_0006' launched from sub-workflow 'CallGenome'
[2026-06-05T13:59:53.921494Z] [nf-eb764436807f84949440cbfad9c88b06-89432-z86sn] [622_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_014_chr15_0008' from sub-workflow 'CallGenome'
[2026-06-05T13:59:53.925137Z] [nf-eb764436807f84949440cbfad9c88b06-89432-z86sn] [622_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_014_chr15_0008] Task initiated on local node
[2026-06-05T13:59:53.986098Z] [nf-eb764436807f84949440cbfad9c88b06-89432-z86sn] [622_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_014_chr15_0008' launched from sub-workflow 'CallGenome'
[2026-06-05T13:59:53.987370Z] [nf-eb764436807f84949440cbfad9c88b06-89432-z86sn] [622_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_012_chr13_0007' from sub-workflow 'CallGenome'
[2026-06-05T13:59:53.990942Z] [nf-eb764436807f84949440cbfad9c88b06-89432-z86sn] [622_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_012_chr13_0007] Task initiated on local node
[2026-06-05T13:59:54.052333Z] [nf-eb764436807f84949440cbfad9c88b06-89432-z86sn] [622_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_012_chr13_0007' launched from sub-workflow 'CallGenome'
[2026-06-05T13:59:54.053359Z] [nf-eb764436807f84949440cbfad9c88b06-89432-z86sn] [622_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_014_chr15_0002' from sub-workflow 'CallGenome'
[2026-06-05T13:59:54.056900Z] [nf-eb764436807f84949440cbfad9c88b06-89432-z86sn] [622_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_014_chr15_0002] Task initiated on local node
[2026-06-05T13:59:54.268330Z] [nf-eb764436807f84949440cbfad9c88b06-89432-z86sn] [622_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_012_chr13_0004' launched from sub-workflow 'CallGenome'
[2026-06-05T13:59:54.269518Z] [nf-eb764436807f84949440cbfad9c88b06-89432-z86sn] [622_1] [TaskManager] Launching command task: 'CallGenome+fixVcfHeader_chromId_011_chr12_0000' from sub-workflow 'CallGenome'
[2026-06-05T13:59:54.272563Z] [nf-eb764436807f84949440cbfad9c88b06-89432-z86sn] [622_1] [TaskRunner:CallGenome+fixVcfHeader_chromId_011_chr12_0000] Task initiated on local node
[2026-06-05T13:59:54.301738Z] [nf-eb764436807f84949440cbfad9c88b06-89432-z86sn] [622_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_012_chr13_0006' launched from sub-workflow 'CallGenome'
[2026-06-05T13:59:54.302921Z] [nf-eb764436807f84949440cbfad9c88b06-89432-z86sn] [622_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0007' from sub-workflow 'CallGenome'
[2026-06-05T13:59:54.306259Z] [nf-eb764436807f84949440cbfad9c88b06-89432-z86sn] [622_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_011_chr12_0007] Task initiated on local node
[2026-06-05T13:59:54.311440Z] [nf-eb764436807f84949440cbfad9c88b06-89432-z86sn] [622_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_013_chr14_0004' launched from sub-workflow 'CallGenome'
[2026-06-05T13:59:54.312402Z] [nf-eb764436807f84949440cbfad9c88b06-89432-z86sn] [622_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_013_chr14_0006' from sub-workflow 'CallGenome'
[2026-06-05T13:59:54.315626Z] [nf-eb764436807f84949440cbfad9c88b06-89432-z86sn] [622_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_013_chr14_0006] Task initiated on local node
[2026-06-05T13:59:54.328640Z] [nf-eb764436807f84949440cbfad9c88b06-89432-z86sn] [622_1] [TaskManager] Completed command task: 'CallGenome+fixVcfHeader_chromId_011_chr12_0000' launched from sub-workflow 'CallGenome'
[2026-06-05T13:59:54.329686Z] [nf-eb764436807f84949440cbfad9c88b06-89432-z86sn] [622_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0000' from sub-workflow 'CallGenome'
[2026-06-05T13:59:54.333008Z] [nf-eb764436807f84949440cbfad9c88b06-89432-z86sn] [622_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_011_chr12_0000] Task initiated on local node
[2026-06-05T13:59:54.395387Z] [nf-eb764436807f84949440cbfad9c88b06-89432-z86sn] [622_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0000' launched from sub-workflow 'CallGenome'
[2026-06-05T13:59:54.395507Z] [nf-eb764436807f84949440cbfad9c88b06-89432-z86sn] [622_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0007' launched from sub-workflow 'CallGenome'
[2026-06-05T13:59:54.396515Z] [nf-eb764436807f84949440cbfad9c88b06-89432-z86sn] [622_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0007' from sub-workflow 'CallGenome'
[2026-06-05T13:59:54.397206Z] [nf-eb764436807f84949440cbfad9c88b06-89432-z86sn] [622_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0005' from sub-workflow 'CallGenome'
[2026-06-05T13:59:54.401295Z] [nf-eb764436807f84949440cbfad9c88b06-89432-z86sn] [622_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_011_chr12_0007] Task initiated on local node
[2026-06-05T13:59:54.402971Z] [nf-eb764436807f84949440cbfad9c88b06-89432-z86sn] [622_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_011_chr12_0005] Task initiated on local node
[2026-06-05T13:59:54.463683Z] [nf-eb764436807f84949440cbfad9c88b06-89432-z86sn] [622_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0005' launched from sub-workflow 'CallGenome'
[2026-06-05T13:59:54.463809Z] [nf-eb764436807f84949440cbfad9c88b06-89432-z86sn] [622_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0007' launched from sub-workflow 'CallGenome'
[2026-06-05T13:59:54.464808Z] [nf-eb764436807f84949440cbfad9c88b06-89432-z86sn] [622_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0005' from sub-workflow 'CallGenome'
[2026-06-05T13:59:54.465419Z] [nf-eb764436807f84949440cbfad9c88b06-89432-z86sn] [622_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_014_chr15_0007' from sub-workflow 'CallGenome'
[2026-06-05T13:59:54.469429Z] [nf-eb764436807f84949440cbfad9c88b06-89432-z86sn] [622_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_011_chr12_0005] Task initiated on local node
[2026-06-05T13:59:54.470672Z] [nf-eb764436807f84949440cbfad9c88b06-89432-z86sn] [622_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_014_chr15_0007] Task initiated on local node
[2026-06-05T13:59:54.531797Z] [nf-eb764436807f84949440cbfad9c88b06-89432-z86sn] [622_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0005' launched from sub-workflow 'CallGenome'
[2026-06-05T13:59:54.532806Z] [nf-eb764436807f84949440cbfad9c88b06-89432-z86sn] [622_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_012_chr13_0004' from sub-workflow 'CallGenome'
[2026-06-05T13:59:54.536758Z] [nf-eb764436807f84949440cbfad9c88b06-89432-z86sn] [622_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_012_chr13_0004] Task initiated on local node
[2026-06-05T13:59:54.597467Z] [nf-eb764436807f84949440cbfad9c88b06-89432-z86sn] [622_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_012_chr13_0004' launched from sub-workflow 'CallGenome'
[2026-06-05T13:59:54.598502Z] [nf-eb764436807f84949440cbfad9c88b06-89432-z86sn] [622_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0003' from sub-workflow 'CallGenome'
[2026-06-05T13:59:54.602722Z] [nf-eb764436807f84949440cbfad9c88b06-89432-z86sn] [622_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_011_chr12_0003] Task initiated on local node
[2026-06-05T13:59:54.631066Z] [nf-eb764436807f84949440cbfad9c88b06-89432-z86sn] [622_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_012_chr13_0002' launched from sub-workflow 'CallGenome'
[2026-06-05T13:59:54.632159Z] [nf-eb764436807f84949440cbfad9c88b06-89432-z86sn] [622_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_012_chr13_0002' from sub-workflow 'CallGenome'
[2026-06-05T13:59:54.635570Z] [nf-eb764436807f84949440cbfad9c88b06-89432-z86sn] [622_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_012_chr13_0002] Task initiated on local node
[2026-06-05T13:59:54.664598Z] [nf-eb764436807f84949440cbfad9c88b06-89432-z86sn] [622_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0003' launched from sub-workflow 'CallGenome'
[2026-06-05T13:59:54.665593Z] [nf-eb764436807f84949440cbfad9c88b06-89432-z86sn] [622_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_012_chr13_0001' from sub-workflow 'CallGenome'
[2026-06-05T13:59:54.668750Z] [nf-eb764436807f84949440cbfad9c88b06-89432-z86sn] [622_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_012_chr13_0001] Task initiated on local node
[2026-06-05T13:59:54.675224Z] [nf-eb764436807f84949440cbfad9c88b06-89432-z86sn] [622_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_012_chr13_0002' launched from sub-workflow 'CallGenome'
[2026-06-05T13:59:54.676087Z] [nf-eb764436807f84949440cbfad9c88b06-89432-z86sn] [622_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0003' from sub-workflow 'CallGenome'
[2026-06-05T13:59:54.679233Z] [nf-eb764436807f84949440cbfad9c88b06-89432-z86sn] [622_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_011_chr12_0003] Task initiated on local node
[2026-06-05T13:59:54.708545Z] [nf-eb764436807f84949440cbfad9c88b06-89432-z86sn] [622_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_012_chr13_0001' launched from sub-workflow 'CallGenome'
[2026-06-05T13:59:54.709553Z] [nf-eb764436807f84949440cbfad9c88b06-89432-z86sn] [622_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_014_chr15_0004' from sub-workflow 'CallGenome'
[2026-06-05T13:59:54.713290Z] [nf-eb764436807f84949440cbfad9c88b06-89432-z86sn] [622_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_014_chr15_0004] Task initiated on local node
[2026-06-05T13:59:54.713933Z] [nf-eb764436807f84949440cbfad9c88b06-89432-z86sn] [622_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0003' launched from sub-workflow 'CallGenome'
[2026-06-05T13:59:54.714719Z] [nf-eb764436807f84949440cbfad9c88b06-89432-z86sn] [622_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_012_chr13_0003' from sub-workflow 'CallGenome'
[2026-06-05T13:59:54.718033Z] [nf-eb764436807f84949440cbfad9c88b06-89432-z86sn] [622_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_012_chr13_0003] Task initiated on local node
[2026-06-05T13:59:54.879329Z] [nf-eb764436807f84949440cbfad9c88b06-89432-z86sn] [622_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_013_chr14_0001' launched from sub-workflow 'CallGenome'
[2026-06-05T13:59:54.880334Z] [nf-eb764436807f84949440cbfad9c88b06-89432-z86sn] [622_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_013_chr14_0003' from sub-workflow 'CallGenome'
[2026-06-05T13:59:54.883839Z] [nf-eb764436807f84949440cbfad9c88b06-89432-z86sn] [622_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_013_chr14_0003] Task initiated on local node
[2026-06-05T13:59:55.596707Z] [nf-eb764436807f84949440cbfad9c88b06-89432-z86sn] [622_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_014_chr15_0005' launched from sub-workflow 'CallGenome'
[2026-06-05T13:59:55.597729Z] [nf-eb764436807f84949440cbfad9c88b06-89432-z86sn] [622_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_015_chr16_0005' from sub-workflow 'CallGenome'
[2026-06-05T13:59:55.601138Z] [nf-eb764436807f84949440cbfad9c88b06-89432-z86sn] [622_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_015_chr16_0005] Task initiated on local node
[2026-06-05T13:59:55.614061Z] [nf-eb764436807f84949440cbfad9c88b06-89432-z86sn] [622_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_014_chr15_0002' launched from sub-workflow 'CallGenome'
[2026-06-05T13:59:55.614945Z] [nf-eb764436807f84949440cbfad9c88b06-89432-z86sn] [622_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_014_chr15_0002' from sub-workflow 'CallGenome'
[2026-06-05T13:59:55.617976Z] [nf-eb764436807f84949440cbfad9c88b06-89432-z86sn] [622_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_014_chr15_0002] Task initiated on local node
[2026-06-05T13:59:55.679432Z] [nf-eb764436807f84949440cbfad9c88b06-89432-z86sn] [622_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_014_chr15_0002' launched from sub-workflow 'CallGenome'
[2026-06-05T13:59:55.679532Z] [nf-eb764436807f84949440cbfad9c88b06-89432-z86sn] [622_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_015_chr16_0005' launched from sub-workflow 'CallGenome'
[2026-06-05T13:59:55.680413Z] [nf-eb764436807f84949440cbfad9c88b06-89432-z86sn] [622_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_013_chr14_0008' from sub-workflow 'CallGenome'
[2026-06-05T13:59:55.680698Z] [nf-eb764436807f84949440cbfad9c88b06-89432-z86sn] [622_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0011' from sub-workflow 'CallGenome'
[2026-06-05T13:59:55.684307Z] [nf-eb764436807f84949440cbfad9c88b06-89432-z86sn] [622_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_011_chr12_0011] Task initiated on local node
[2026-06-05T13:59:55.684968Z] [nf-eb764436807f84949440cbfad9c88b06-89432-z86sn] [622_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_013_chr14_0008] Task initiated on local node
[2026-06-05T13:59:55.745288Z] [nf-eb764436807f84949440cbfad9c88b06-89432-z86sn] [622_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_013_chr14_0008' launched from sub-workflow 'CallGenome'
[2026-06-05T13:59:55.745387Z] [nf-eb764436807f84949440cbfad9c88b06-89432-z86sn] [622_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0011' launched from sub-workflow 'CallGenome'
[2026-06-05T13:59:55.746260Z] [nf-eb764436807f84949440cbfad9c88b06-89432-z86sn] [622_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0001' from sub-workflow 'CallGenome'
[2026-06-05T13:59:55.746939Z] [nf-eb764436807f84949440cbfad9c88b06-89432-z86sn] [622_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_014_chr15_0005' from sub-workflow 'CallGenome'
[2026-06-05T13:59:55.749823Z] [nf-eb764436807f84949440cbfad9c88b06-89432-z86sn] [622_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_014_chr15_0005] Task initiated on local node
[2026-06-05T13:59:55.764126Z] [nf-eb764436807f84949440cbfad9c88b06-89432-z86sn] [622_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_013_chr14_0003' launched from sub-workflow 'CallGenome'
[2026-06-05T13:59:55.764928Z] [nf-eb764436807f84949440cbfad9c88b06-89432-z86sn] [622_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_013_chr14_0003' from sub-workflow 'CallGenome'
[2026-06-05T13:59:55.767786Z] [nf-eb764436807f84949440cbfad9c88b06-89432-z86sn] [622_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_013_chr14_0003] Task initiated on local node
[2026-06-05T13:59:55.783822Z] [nf-eb764436807f84949440cbfad9c88b06-89432-z86sn] [622_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_011_chr12_0001] Task initiated on local node
[2026-06-05T13:59:55.797550Z] [nf-eb764436807f84949440cbfad9c88b06-89432-z86sn] [622_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0001' launched from sub-workflow 'CallGenome'
[2026-06-05T13:59:55.797618Z] [nf-eb764436807f84949440cbfad9c88b06-89432-z86sn] [622_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_014_chr15_0005' launched from sub-workflow 'CallGenome'
[2026-06-05T13:59:55.798401Z] [nf-eb764436807f84949440cbfad9c88b06-89432-z86sn] [622_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_012_chr13_0009' from sub-workflow 'CallGenome'
[2026-06-05T13:59:55.799105Z] [nf-eb764436807f84949440cbfad9c88b06-89432-z86sn] [622_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0006' from sub-workflow 'CallGenome'
[2026-06-05T13:59:55.801446Z] [nf-eb764436807f84949440cbfad9c88b06-89432-z86sn] [622_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_012_chr13_0009] Task initiated on local node
[2026-06-05T13:59:55.801792Z] [nf-eb764436807f84949440cbfad9c88b06-89432-z86sn] [622_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_013_chr14_0003' launched from sub-workflow 'CallGenome'
[2026-06-05T13:59:55.803999Z] [nf-eb764436807f84949440cbfad9c88b06-89432-z86sn] [622_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0002' from sub-workflow 'CallGenome'
[2026-06-05T13:59:55.804381Z] [nf-eb764436807f84949440cbfad9c88b06-89432-z86sn] [622_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_011_chr12_0006] Task initiated on local node
[2026-06-05T13:59:55.807254Z] [nf-eb764436807f84949440cbfad9c88b06-89432-z86sn] [622_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_011_chr12_0002] Task initiated on local node
[2026-06-05T13:59:55.836697Z] [nf-eb764436807f84949440cbfad9c88b06-89432-z86sn] [622_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_012_chr13_0009' launched from sub-workflow 'CallGenome'
[2026-06-05T13:59:55.837446Z] [nf-eb764436807f84949440cbfad9c88b06-89432-z86sn] [622_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_014_chr15_0001' from sub-workflow 'CallGenome'
[2026-06-05T13:59:55.841888Z] [nf-eb764436807f84949440cbfad9c88b06-89432-z86sn] [622_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_014_chr15_0001] Task initiated on local node
[2026-06-05T13:59:55.870600Z] [nf-eb764436807f84949440cbfad9c88b06-89432-z86sn] [622_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0002' launched from sub-workflow 'CallGenome'
[2026-06-05T13:59:55.870711Z] [nf-eb764436807f84949440cbfad9c88b06-89432-z86sn] [622_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0006' launched from sub-workflow 'CallGenome'
[2026-06-05T13:59:55.871448Z] [nf-eb764436807f84949440cbfad9c88b06-89432-z86sn] [622_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_012_chr13_0000' from sub-workflow 'CallGenome'
[2026-06-05T13:59:55.871995Z] [nf-eb764436807f84949440cbfad9c88b06-89432-z86sn] [622_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_015_chr16_0005' from sub-workflow 'CallGenome'
[2026-06-05T13:59:55.876326Z] [nf-eb764436807f84949440cbfad9c88b06-89432-z86sn] [622_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_015_chr16_0005] Task initiated on local node
[2026-06-05T13:59:55.877810Z] [nf-eb764436807f84949440cbfad9c88b06-89432-z86sn] [622_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_012_chr13_0000] Task initiated on local node
[2026-06-05T13:59:55.937135Z] [nf-eb764436807f84949440cbfad9c88b06-89432-z86sn] [622_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_012_chr13_0000' launched from sub-workflow 'CallGenome'
[2026-06-05T13:59:55.937250Z] [nf-eb764436807f84949440cbfad9c88b06-89432-z86sn] [622_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_015_chr16_0005' launched from sub-workflow 'CallGenome'
[2026-06-05T13:59:55.938018Z] [nf-eb764436807f84949440cbfad9c88b06-89432-z86sn] [622_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_015_chr16_0006' from sub-workflow 'CallGenome'
[2026-06-05T13:59:55.938729Z] [nf-eb764436807f84949440cbfad9c88b06-89432-z86sn] [622_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_012_chr13_0000' from sub-workflow 'CallGenome'
[2026-06-05T13:59:55.942981Z] [nf-eb764436807f84949440cbfad9c88b06-89432-z86sn] [622_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_015_chr16_0006] Task initiated on local node
[2026-06-05T13:59:55.944149Z] [nf-eb764436807f84949440cbfad9c88b06-89432-z86sn] [622_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_012_chr13_0000] Task initiated on local node
[2026-06-05T13:59:55.947460Z] [nf-eb764436807f84949440cbfad9c88b06-89432-z86sn] [622_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0010' launched from sub-workflow 'CallGenome'
[2026-06-05T13:59:55.948104Z] [nf-eb764436807f84949440cbfad9c88b06-89432-z86sn] [622_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_012_chr13_0005' from sub-workflow 'CallGenome'
[2026-06-05T13:59:55.951199Z] [nf-eb764436807f84949440cbfad9c88b06-89432-z86sn] [622_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_012_chr13_0005] Task initiated on local node
[2026-06-05T13:59:56.012289Z] [nf-eb764436807f84949440cbfad9c88b06-89432-z86sn] [622_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_012_chr13_0000' launched from sub-workflow 'CallGenome'
[2026-06-05T13:59:56.012393Z] [nf-eb764436807f84949440cbfad9c88b06-89432-z86sn] [622_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_015_chr16_0006' launched from sub-workflow 'CallGenome'
[2026-06-05T13:59:56.013049Z] [nf-eb764436807f84949440cbfad9c88b06-89432-z86sn] [622_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_013_chr14_0005' from sub-workflow 'CallGenome'
[2026-06-05T13:59:56.013631Z] [nf-eb764436807f84949440cbfad9c88b06-89432-z86sn] [622_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0010' from sub-workflow 'CallGenome'
[2026-06-05T13:59:56.017715Z] [nf-eb764436807f84949440cbfad9c88b06-89432-z86sn] [622_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_011_chr12_0010] Task initiated on local node
[2026-06-05T13:59:56.018849Z] [nf-eb764436807f84949440cbfad9c88b06-89432-z86sn] [622_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_013_chr14_0005] Task initiated on local node
[2026-06-05T13:59:56.022648Z] [nf-eb764436807f84949440cbfad9c88b06-89432-z86sn] [622_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_014_chr15_0001' launched from sub-workflow 'CallGenome'
[2026-06-05T13:59:56.023339Z] [nf-eb764436807f84949440cbfad9c88b06-89432-z86sn] [622_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_013_chr14_0004' from sub-workflow 'CallGenome'
[2026-06-05T13:59:56.026965Z] [nf-eb764436807f84949440cbfad9c88b06-89432-z86sn] [622_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_013_chr14_0004] Task initiated on local node
[2026-06-05T13:59:56.055948Z] [nf-eb764436807f84949440cbfad9c88b06-89432-z86sn] [622_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0010' launched from sub-workflow 'CallGenome'
[2026-06-05T13:59:56.056729Z] [nf-eb764436807f84949440cbfad9c88b06-89432-z86sn] [622_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0002' from sub-workflow 'CallGenome'
[2026-06-05T13:59:56.060884Z] [nf-eb764436807f84949440cbfad9c88b06-89432-z86sn] [622_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_011_chr12_0002] Task initiated on local node
[2026-06-05T13:59:56.062356Z] [nf-eb764436807f84949440cbfad9c88b06-89432-z86sn] [622_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_013_chr14_0004' launched from sub-workflow 'CallGenome'
[2026-06-05T13:59:56.062997Z] [nf-eb764436807f84949440cbfad9c88b06-89432-z86sn] [622_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_014_chr15_0001' from sub-workflow 'CallGenome'
[2026-06-05T13:59:56.065902Z] [nf-eb764436807f84949440cbfad9c88b06-89432-z86sn] [622_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_014_chr15_0001] Task initiated on local node
[2026-06-05T13:59:56.095105Z] [nf-eb764436807f84949440cbfad9c88b06-89432-z86sn] [622_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0002' launched from sub-workflow 'CallGenome'
[2026-06-05T13:59:56.095768Z] [nf-eb764436807f84949440cbfad9c88b06-89432-z86sn] [622_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_015_chr16_0000' from sub-workflow 'CallGenome'
[2026-06-05T13:59:56.099621Z] [nf-eb764436807f84949440cbfad9c88b06-89432-z86sn] [622_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_015_chr16_0000] Task initiated on local node
[2026-06-05T13:59:56.100359Z] [nf-eb764436807f84949440cbfad9c88b06-89432-z86sn] [622_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_014_chr15_0001' launched from sub-workflow 'CallGenome'
[2026-06-05T13:59:56.100997Z] [nf-eb764436807f84949440cbfad9c88b06-89432-z86sn] [622_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_012_chr13_0006' from sub-workflow 'CallGenome'
[2026-06-05T13:59:56.104846Z] [nf-eb764436807f84949440cbfad9c88b06-89432-z86sn] [622_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_012_chr13_0006] Task initiated on local node
[2026-06-05T13:59:56.165932Z] [nf-eb764436807f84949440cbfad9c88b06-89432-z86sn] [622_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_012_chr13_0006' launched from sub-workflow 'CallGenome'
[2026-06-05T13:59:56.166715Z] [nf-eb764436807f84949440cbfad9c88b06-89432-z86sn] [622_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_012_chr13_0008' from sub-workflow 'CallGenome'
[2026-06-05T13:59:56.170757Z] [nf-eb764436807f84949440cbfad9c88b06-89432-z86sn] [622_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_012_chr13_0008] Task initiated on local node
[2026-06-05T13:59:56.331856Z] [nf-eb764436807f84949440cbfad9c88b06-89432-z86sn] [622_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_012_chr13_0005' launched from sub-workflow 'CallGenome'
[2026-06-05T13:59:56.332646Z] [nf-eb764436807f84949440cbfad9c88b06-89432-z86sn] [622_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_012_chr13_0005' from sub-workflow 'CallGenome'
[2026-06-05T13:59:56.336451Z] [nf-eb764436807f84949440cbfad9c88b06-89432-z86sn] [622_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_012_chr13_0005] Task initiated on local node
[2026-06-05T13:59:56.397474Z] [nf-eb764436807f84949440cbfad9c88b06-89432-z86sn] [622_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_012_chr13_0005' launched from sub-workflow 'CallGenome'
[2026-06-05T13:59:56.398310Z] [nf-eb764436807f84949440cbfad9c88b06-89432-z86sn] [622_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_015_chr16_0007' from sub-workflow 'CallGenome'
[2026-06-05T13:59:56.402429Z] [nf-eb764436807f84949440cbfad9c88b06-89432-z86sn] [622_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_015_chr16_0007] Task initiated on local node
[2026-06-05T13:59:56.463255Z] [nf-eb764436807f84949440cbfad9c88b06-89432-z86sn] [622_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_015_chr16_0007' launched from sub-workflow 'CallGenome'
[2026-06-05T13:59:56.464045Z] [nf-eb764436807f84949440cbfad9c88b06-89432-z86sn] [622_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_015_chr16_0003' from sub-workflow 'CallGenome'
[2026-06-05T13:59:56.467437Z] [nf-eb764436807f84949440cbfad9c88b06-89432-z86sn] [622_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_015_chr16_0003] Task initiated on local node
[2026-06-05T13:59:56.528548Z] [nf-eb764436807f84949440cbfad9c88b06-89432-z86sn] [622_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_015_chr16_0003' launched from sub-workflow 'CallGenome'
[2026-06-05T13:59:56.529332Z] [nf-eb764436807f84949440cbfad9c88b06-89432-z86sn] [622_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_013_chr14_0007' from sub-workflow 'CallGenome'
[2026-06-05T13:59:56.533026Z] [nf-eb764436807f84949440cbfad9c88b06-89432-z86sn] [622_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_013_chr14_0007] Task initiated on local node
[2026-06-05T13:59:56.594496Z] [nf-eb764436807f84949440cbfad9c88b06-89432-z86sn] [622_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_012_chr13_0003' launched from sub-workflow 'CallGenome'
[2026-06-05T13:59:56.594594Z] [nf-eb764436807f84949440cbfad9c88b06-89432-z86sn] [622_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_014_chr15_0007' launched from sub-workflow 'CallGenome'
[2026-06-05T13:59:56.595271Z] [nf-eb764436807f84949440cbfad9c88b06-89432-z86sn] [622_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_012_chr13_0003' from sub-workflow 'CallGenome'
[2026-06-05T13:59:56.595948Z] [nf-eb764436807f84949440cbfad9c88b06-89432-z86sn] [622_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_013_chr14_0000' from sub-workflow 'CallGenome'
[2026-06-05T13:59:56.599305Z] [nf-eb764436807f84949440cbfad9c88b06-89432-z86sn] [622_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_012_chr13_0003] Task initiated on local node
[2026-06-05T13:59:56.600491Z] [nf-eb764436807f84949440cbfad9c88b06-89432-z86sn] [622_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_013_chr14_0000] Task initiated on local node
[2026-06-05T13:59:56.662258Z] [nf-eb764436807f84949440cbfad9c88b06-89432-z86sn] [622_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_013_chr14_0000' launched from sub-workflow 'CallGenome'
[2026-06-05T13:59:56.662352Z] [nf-eb764436807f84949440cbfad9c88b06-89432-z86sn] [622_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_012_chr13_0003' launched from sub-workflow 'CallGenome'
[2026-06-05T13:59:56.663007Z] [nf-eb764436807f84949440cbfad9c88b06-89432-z86sn] [622_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_013_chr14_0000' from sub-workflow 'CallGenome'
[2026-06-05T13:59:56.663496Z] [nf-eb764436807f84949440cbfad9c88b06-89432-z86sn] [622_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0004' from sub-workflow 'CallGenome'
[2026-06-05T13:59:56.666898Z] [nf-eb764436807f84949440cbfad9c88b06-89432-z86sn] [622_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_013_chr14_0000] Task initiated on local node
[2026-06-05T13:59:56.667950Z] [nf-eb764436807f84949440cbfad9c88b06-89432-z86sn] [622_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_011_chr12_0004] Task initiated on local node
[2026-06-05T13:59:56.727899Z] [nf-eb764436807f84949440cbfad9c88b06-89432-z86sn] [622_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_013_chr14_0000' launched from sub-workflow 'CallGenome'
[2026-06-05T13:59:56.727998Z] [nf-eb764436807f84949440cbfad9c88b06-89432-z86sn] [622_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0004' launched from sub-workflow 'CallGenome'
[2026-06-05T13:59:56.728594Z] [nf-eb764436807f84949440cbfad9c88b06-89432-z86sn] [622_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0004' from sub-workflow 'CallGenome'
[2026-06-05T13:59:56.730591Z] [nf-eb764436807f84949440cbfad9c88b06-89432-z86sn] [622_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_015_chr16_0004' from sub-workflow 'CallGenome'
[2026-06-05T13:59:56.731854Z] [nf-eb764436807f84949440cbfad9c88b06-89432-z86sn] [622_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_011_chr12_0004] Task initiated on local node
[2026-06-05T13:59:56.735408Z] [nf-eb764436807f84949440cbfad9c88b06-89432-z86sn] [622_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_015_chr16_0004] Task initiated on local node
[2026-06-05T13:59:56.795507Z] [nf-eb764436807f84949440cbfad9c88b06-89432-z86sn] [622_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_015_chr16_0004' launched from sub-workflow 'CallGenome'
[2026-06-05T13:59:56.795605Z] [nf-eb764436807f84949440cbfad9c88b06-89432-z86sn] [622_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0004' launched from sub-workflow 'CallGenome'
[2026-06-05T13:59:56.795638Z] [nf-eb764436807f84949440cbfad9c88b06-89432-z86sn] [622_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_013_chr14_0006' launched from sub-workflow 'CallGenome'
[2026-06-05T13:59:56.795666Z] [nf-eb764436807f84949440cbfad9c88b06-89432-z86sn] [622_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_014_chr15_0004' launched from sub-workflow 'CallGenome'
[2026-06-05T13:59:56.796298Z] [nf-eb764436807f84949440cbfad9c88b06-89432-z86sn] [622_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_015_chr16_0004' from sub-workflow 'CallGenome'
[2026-06-05T13:59:56.796618Z] [nf-eb764436807f84949440cbfad9c88b06-89432-z86sn] [622_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_014_chr15_0004' from sub-workflow 'CallGenome'
[2026-06-05T13:59:56.796838Z] [nf-eb764436807f84949440cbfad9c88b06-89432-z86sn] [622_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_014_chr15_0007' from sub-workflow 'CallGenome'
[2026-06-05T13:59:56.797207Z] [nf-eb764436807f84949440cbfad9c88b06-89432-z86sn] [622_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_014_chr15_0003' from sub-workflow 'CallGenome'
[2026-06-05T13:59:56.800690Z] [nf-eb764436807f84949440cbfad9c88b06-89432-z86sn] [622_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_014_chr15_0007] Task initiated on local node
[2026-06-05T13:59:56.805055Z] [nf-eb764436807f84949440cbfad9c88b06-89432-z86sn] [622_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_014_chr15_0004] Task initiated on local node
[2026-06-05T13:59:56.805351Z] [nf-eb764436807f84949440cbfad9c88b06-89432-z86sn] [622_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_014_chr15_0003] Task initiated on local node
[2026-06-05T13:59:56.806854Z] [nf-eb764436807f84949440cbfad9c88b06-89432-z86sn] [622_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_015_chr16_0004] Task initiated on local node
[2026-06-05T13:59:56.866425Z] [nf-eb764436807f84949440cbfad9c88b06-89432-z86sn] [622_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_014_chr15_0007' launched from sub-workflow 'CallGenome'
[2026-06-05T13:59:56.866507Z] [nf-eb764436807f84949440cbfad9c88b06-89432-z86sn] [622_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_015_chr16_0004' launched from sub-workflow 'CallGenome'
[2026-06-05T13:59:56.866539Z] [nf-eb764436807f84949440cbfad9c88b06-89432-z86sn] [622_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_014_chr15_0004' launched from sub-workflow 'CallGenome'
[2026-06-05T13:59:56.867059Z] [nf-eb764436807f84949440cbfad9c88b06-89432-z86sn] [622_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_013_chr14_0006' from sub-workflow 'CallGenome'
[2026-06-05T13:59:56.868039Z] [nf-eb764436807f84949440cbfad9c88b06-89432-z86sn] [622_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0009' from sub-workflow 'CallGenome'
[2026-06-05T13:59:56.870359Z] [nf-eb764436807f84949440cbfad9c88b06-89432-z86sn] [622_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0008' from sub-workflow 'CallGenome'
[2026-06-05T13:59:56.871294Z] [nf-eb764436807f84949440cbfad9c88b06-89432-z86sn] [622_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_013_chr14_0006] Task initiated on local node
[2026-06-05T13:59:56.874463Z] [nf-eb764436807f84949440cbfad9c88b06-89432-z86sn] [622_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_011_chr12_0008] Task initiated on local node
[2026-06-05T13:59:56.875833Z] [nf-eb764436807f84949440cbfad9c88b06-89432-z86sn] [622_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_011_chr12_0009] Task initiated on local node
[2026-06-05T13:59:56.903927Z] [nf-eb764436807f84949440cbfad9c88b06-89432-z86sn] [622_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_013_chr14_0006' launched from sub-workflow 'CallGenome'
[2026-06-05T13:59:56.904565Z] [nf-eb764436807f84949440cbfad9c88b06-89432-z86sn] [622_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_013_chr14_0001' from sub-workflow 'CallGenome'
[2026-06-05T13:59:56.907883Z] [nf-eb764436807f84949440cbfad9c88b06-89432-z86sn] [622_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_013_chr14_0001] Task initiated on local node
[2026-06-05T13:59:56.920652Z] [nf-eb764436807f84949440cbfad9c88b06-89432-z86sn] [622_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0008' launched from sub-workflow 'CallGenome'
[2026-06-05T13:59:56.952877Z] [nf-eb764436807f84949440cbfad9c88b06-89432-z86sn] [622_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_013_chr14_0001' launched from sub-workflow 'CallGenome'
[2026-06-05T13:59:57.768935Z] [nf-eb764436807f84949440cbfad9c88b06-89432-z86sn] [622_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_012_chr13_0008' launched from sub-workflow 'CallGenome'
[2026-06-05T13:59:57.769562Z] [nf-eb764436807f84949440cbfad9c88b06-89432-z86sn] [622_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_012_chr13_0008' from sub-workflow 'CallGenome'
[2026-06-05T13:59:57.773599Z] [nf-eb764436807f84949440cbfad9c88b06-89432-z86sn] [622_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_012_chr13_0008] Task initiated on local node
[2026-06-05T13:59:57.834568Z] [nf-eb764436807f84949440cbfad9c88b06-89432-z86sn] [622_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_012_chr13_0008' launched from sub-workflow 'CallGenome'
[2026-06-05T13:59:58.199446Z] [nf-eb764436807f84949440cbfad9c88b06-89432-z86sn] [622_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_013_chr14_0005' launched from sub-workflow 'CallGenome'
[2026-06-05T13:59:58.199538Z] [nf-eb764436807f84949440cbfad9c88b06-89432-z86sn] [622_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_013_chr14_0007' launched from sub-workflow 'CallGenome'
[2026-06-05T13:59:58.200027Z] [nf-eb764436807f84949440cbfad9c88b06-89432-z86sn] [622_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_013_chr14_0005' from sub-workflow 'CallGenome'
[2026-06-05T13:59:58.202005Z] [nf-eb764436807f84949440cbfad9c88b06-89432-z86sn] [622_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_013_chr14_0007' from sub-workflow 'CallGenome'
[2026-06-05T13:59:58.203921Z] [nf-eb764436807f84949440cbfad9c88b06-89432-z86sn] [622_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_013_chr14_0005] Task initiated on local node
[2026-06-05T13:59:58.204965Z] [nf-eb764436807f84949440cbfad9c88b06-89432-z86sn] [622_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_013_chr14_0007] Task initiated on local node
[2026-06-05T13:59:58.234552Z] [nf-eb764436807f84949440cbfad9c88b06-89432-z86sn] [622_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_013_chr14_0005' launched from sub-workflow 'CallGenome'
[2026-06-05T13:59:58.234615Z] [nf-eb764436807f84949440cbfad9c88b06-89432-z86sn] [622_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_013_chr14_0007' launched from sub-workflow 'CallGenome'
[2026-06-05T13:59:58.398977Z] [nf-eb764436807f84949440cbfad9c88b06-89432-z86sn] [622_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_015_chr16_0000' launched from sub-workflow 'CallGenome'
[2026-06-05T13:59:58.399456Z] [nf-eb764436807f84949440cbfad9c88b06-89432-z86sn] [622_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_015_chr16_0000' from sub-workflow 'CallGenome'
[2026-06-05T13:59:58.401951Z] [nf-eb764436807f84949440cbfad9c88b06-89432-z86sn] [622_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_015_chr16_0000] Task initiated on local node
[2026-06-05T13:59:58.432495Z] [nf-eb764436807f84949440cbfad9c88b06-89432-z86sn] [622_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_015_chr16_0000' launched from sub-workflow 'CallGenome'
[2026-06-05T13:59:58.436110Z] [nf-eb764436807f84949440cbfad9c88b06-89432-z86sn] [622_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0009' launched from sub-workflow 'CallGenome'
[2026-06-05T13:59:58.436506Z] [nf-eb764436807f84949440cbfad9c88b06-89432-z86sn] [622_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0009' from sub-workflow 'CallGenome'
[2026-06-05T13:59:58.439989Z] [nf-eb764436807f84949440cbfad9c88b06-89432-z86sn] [622_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_011_chr12_0009] Task initiated on local node
[2026-06-05T13:59:58.501181Z] [nf-eb764436807f84949440cbfad9c88b06-89432-z86sn] [622_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0009' launched from sub-workflow 'CallGenome'
[2026-06-05T13:59:58.865771Z] [nf-eb764436807f84949440cbfad9c88b06-89432-z86sn] [622_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_014_chr15_0003' launched from sub-workflow 'CallGenome'
[2026-06-05T13:59:58.866199Z] [nf-eb764436807f84949440cbfad9c88b06-89432-z86sn] [622_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_014_chr15_0003' from sub-workflow 'CallGenome'
[2026-06-05T13:59:58.869110Z] [nf-eb764436807f84949440cbfad9c88b06-89432-z86sn] [622_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_014_chr15_0003] Task initiated on local node
[2026-06-05T13:59:58.930473Z] [nf-eb764436807f84949440cbfad9c88b06-89432-z86sn] [622_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_014_chr15_0003' launched from sub-workflow 'CallGenome'
[2026-06-05T13:59:58.930786Z] [nf-eb764436807f84949440cbfad9c88b06-89432-z86sn] [622_1] [TaskManager] Completed command task: 'CallGenome+completedAllGenomeSegments' launched from sub-workflow 'CallGenome'
[2026-06-05T13:59:58.930930Z] [nf-eb764436807f84949440cbfad9c88b06-89432-z86sn] [622_1] [TaskManager] Launching command task: 'CallGenome+mergeRunStats' from sub-workflow 'CallGenome'
[2026-06-05T13:59:58.931581Z] [nf-eb764436807f84949440cbfad9c88b06-89432-z86sn] [622_1] [TaskManager] Launching command task: 'CallGenome+SNV_concat_vcf' from sub-workflow 'CallGenome'
[2026-06-05T13:59:58.932387Z] [nf-eb764436807f84949440cbfad9c88b06-89432-z86sn] [622_1] [TaskManager] Launching command task: 'CallGenome+Indel_concat_vcf' from sub-workflow 'CallGenome'
[2026-06-05T13:59:58.936487Z] [nf-eb764436807f84949440cbfad9c88b06-89432-z86sn] [622_1] [TaskRunner:CallGenome+mergeRunStats] Task initiated on local node
[2026-06-05T13:59:58.938077Z] [nf-eb764436807f84949440cbfad9c88b06-89432-z86sn] [622_1] [TaskRunner:CallGenome+Indel_concat_vcf] Task initiated on local node
[2026-06-05T13:59:58.939082Z] [nf-eb764436807f84949440cbfad9c88b06-89432-z86sn] [622_1] [TaskRunner:CallGenome+SNV_concat_vcf] Task initiated on local node
[2026-06-05T13:59:58.965142Z] [nf-eb764436807f84949440cbfad9c88b06-89432-z86sn] [622_1] [TaskManager] Completed command task: 'CallGenome+SNV_concat_vcf' launched from sub-workflow 'CallGenome'
[2026-06-05T13:59:58.965205Z] [nf-eb764436807f84949440cbfad9c88b06-89432-z86sn] [622_1] [TaskManager] Completed command task: 'CallGenome+Indel_concat_vcf' launched from sub-workflow 'CallGenome'
[2026-06-05T13:59:58.965230Z] [nf-eb764436807f84949440cbfad9c88b06-89432-z86sn] [622_1] [TaskManager] Completed command task: 'CallGenome+mergeRunStats' launched from sub-workflow 'CallGenome'
[2026-06-05T13:59:58.965430Z] [nf-eb764436807f84949440cbfad9c88b06-89432-z86sn] [622_1] [TaskManager] Launching command task: 'CallGenome+SNV_index_vcf' from sub-workflow 'CallGenome'
[2026-06-05T13:59:58.966011Z] [nf-eb764436807f84949440cbfad9c88b06-89432-z86sn] [622_1] [TaskManager] Launching command task: 'CallGenome+Indel_index_vcf' from sub-workflow 'CallGenome'
[2026-06-05T13:59:58.968752Z] [nf-eb764436807f84949440cbfad9c88b06-89432-z86sn] [622_1] [TaskRunner:CallGenome+Indel_index_vcf] Task initiated on local node
[2026-06-05T13:59:58.969797Z] [nf-eb764436807f84949440cbfad9c88b06-89432-z86sn] [622_1] [TaskRunner:CallGenome+SNV_index_vcf] Task initiated on local node
[2026-06-05T13:59:58.998177Z] [nf-eb764436807f84949440cbfad9c88b06-89432-z86sn] [622_1] [TaskManager] Completed command task: 'CallGenome+SNV_index_vcf' launched from sub-workflow 'CallGenome'
[2026-06-05T13:59:58.998242Z] [nf-eb764436807f84949440cbfad9c88b06-89432-z86sn] [622_1] [TaskManager] Completed command task: 'CallGenome+Indel_index_vcf' launched from sub-workflow 'CallGenome'
[2026-06-05T13:59:58.998413Z] [nf-eb764436807f84949440cbfad9c88b06-89432-z86sn] [622_1] [TaskManager] Launching command task: 'CallGenome+removeTmpDir' from sub-workflow 'CallGenome'
[2026-06-05T13:59:59.000823Z] [nf-eb764436807f84949440cbfad9c88b06-89432-z86sn] [622_1] [TaskRunner:CallGenome+removeTmpDir] Task initiated on local node
[2026-06-05T13:59:59.030794Z] [nf-eb764436807f84949440cbfad9c88b06-89432-z86sn] [622_1] [TaskManager] Completed command task: 'CallGenome+removeTmpDir' launched from sub-workflow 'CallGenome'
[2026-06-05T14:00:01.649613Z] [nf-eb764436807f84949440cbfad9c88b06-89432-z86sn] [622_1] [TaskManager] Completed sub-workflow task: 'CallGenome' launched from master workflow
[2026-06-05T14:00:09.871205Z] [nf-eb764436807f84949440cbfad9c88b06-89432-z86sn] [622_1] [WorkflowRunner] Strelka somatic workflow successfully completed.
[2026-06-05T14:00:09.871205Z] [nf-eb764436807f84949440cbfad9c88b06-89432-z86sn] [622_1] [WorkflowRunner] 
[2026-06-05T14:00:09.871205Z] [nf-eb764436807f84949440cbfad9c88b06-89432-z86sn] [622_1] [WorkflowRunner] 	workflow version: 2.9.10
[2026-06-05T14:00:09.871264Z] [nf-eb764436807f84949440cbfad9c88b06-89432-z86sn] [622_1] [WorkflowRunner] 
[2026-06-05T14:00:09.871271Z] [nf-eb764436807f84949440cbfad9c88b06-89432-z86sn] [622_1] [WorkflowRunner] Workflow successfully completed all tasks
[2026-06-05T14:00:09.871278Z] [nf-eb764436807f84949440cbfad9c88b06-89432-z86sn] [622_1] [WorkflowRunner] Elapsed time for full workflow: 18 sec