File Info

Filename
positive_somatic_control_2.tnseq.orientation_data.tsv
Full Path
s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/32/23b1bdbe83d64ae69726161a3d2482/positive_somatic_control_2.tnseq.orientation_data.tsv
Size
8.7 KB
Task
DAQ:CONTROL_VARIANT_CALLING:CONTROL_SOMATIC_VC:BAM_VARIANT_CALLING_SOMATIC_TNSEQ:SENTIEON_TNHAPLOTYPER2 (positive_somatic_control_2)
Attempt

Content

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#<METADATA>SAMPLE=Sig_18_tissue
context rev_comp f1r2_a f1r2_c f1r2_g f1r2_t f2r1_a f2r1_c f2r1_g f2r1_t hom_ref germline_het somatic_het hom_var num_examples num_alt_examples
AAA TTT 0 3.44815e-06 1.86013e-05 2.96191e-06 0 4.36616e-06 7.59483e-05 2.93794e-06 0.998858 8.4978e-05 0.000682969 0.000265663 39999 559
AAC GTT 0 5.95882e-06 1.10074e-05 6.32042e-06 0 5.89409e-05 9.37766e-06 5.35054e-06 0.998954 0.000519555 0.000158015 0.000271782 18747 300
AAG CTT 0 3.78898e-06 3.00481e-05 3.93701e-06 0 4.90803e-06 0.000227795 4.397e-06 0.998595 0.00022142 0.000505963 0.000403232 27503 632
AAT ATT 0 4.4063e-06 7.40039e-06 4.26142e-06 0 4.3707e-06 7.82492e-05 5.38574e-06 0.999109 0.000174134 0.000472558 0.000140264 23753 360
ACA TGT 0.00302354 0 6.05495e-06 0.000556589 0.0032908 0 3.85224e-06 5.83574e-05 0.991837 8.54012e-05 0.000835649 0.000302552 26771 1516
ACC GGT 0.000922965 0 5.25107e-06 0.000653052 0.00197171 0 5.17989e-06 0.000363483 0.994656 0.000672657 0.000497066 0.000252618 20186 975
ACG CGT 0.00273575 0 1.20165e-05 0.00363353 0.00331027 0 0.000106411 0.00165205 0.981336 0.00256546 0.00256692 0.00208198 8680 718
ACT AGT 0.00145516 0 5.40167e-06 0.00073988 0.00182696 0 6.03621e-06 9.2889e-05 0.994586 0.000368639 0.000466452 0.000452659 20099 1024
AGA TCT 0.000114127 4.33892e-06 0 0.00129213 0.000444644 3.40893e-06 0 0.00106157 0.996038 0.000226558 0.000460082 0.00035475 29498 1074
AGC GCT 0.000381936 8.4536e-06 0 0.00431744 0.000611965 4.55011e-06 0 0.00337441 0.990109 6.34933e-05 0.000821764 0.000306682 26507 1603
AGG CCT 1.1312e-05 3.80141e-06 0 0.000919822 0.000698917 3.46714e-06 0 0.00128671 0.995901 0.000282807 0.000529706 0.000362143 30522 1331
AGT ACT 9.2889e-05 6.03621e-06 0 0.00182696 0.00073988 5.40167e-06 0 0.00145516 0.994586 0.000368639 0.000466452 0.000452659 20099 1024
ATA TAT 1.21918e-05 1.03671e-05 7.01018e-06 0 6.08896e-06 7.21872e-06 1.41382e-05 0 0.998204 0.000199562 0.00136514 0.000174685 17741 321
ATC GAT 6.59857e-06 1.92686e-05 6.25942e-06 0 5.91764e-06 0.000249172 6.87217e-06 0 0.99837 9.11902e-05 0.000605966 0.000639197 16901 290
ATG CAT 4.49059e-06 5.55592e-05 8.938e-05 0 4.38743e-06 1.20761e-05 7.46721e-06 0 0.997328 0.000308026 0.00113802 0.00105286 22884 436
ATT AAT 5.38574e-06 7.82492e-05 4.3707e-06 0 4.26142e-06 7.40039e-06 4.4063e-06 0 0.999109 0.000174134 0.000472558 0.000140264 23753 360
CAA TTG 0 7.62596e-06 4.70951e-05 4.59246e-06 0 3.13317e-05 7.12578e-06 4.44333e-06 0.998809 0.000264166 0.000422182 0.0004027 22596 417
CAC GTG 0 4.95292e-06 1.81338e-05 3.89878e-06 0 4.25148e-06 7.58368e-05 6.14287e-06 0.997064 0.00092803 0.000826748 0.00106845 25775 572
CAG CTG 0 4.01104e-06 0.000404848 2.61873e-06 0 1.19272e-05 0.000289807 3.60595e-06 0.99712 0.000683212 0.00055501 0.00092465 38585 1083
CAT ATG 0 7.46721e-06 1.20761e-05 4.38743e-06 0 8.938e-05 5.55592e-05 4.49059e-06 0.997328 0.000308026 0.00113802 0.00105286 22884 436
CCA TGG 0.00176409 0 3.48728e-06 0.000547633 0.00222342 0 3.73711e-06 0.000231126 0.994458 3.25704e-05 0.000570483 0.000165315 30839 1521
CCC GGG 0.000178754 0 3.37937e-06 0.000860768 0.000880267 0 3.5002e-06 1.6909e-05 0.996728 0.000202954 0.000688381 0.000436676 29983 1033
CCG CGG 0.00191563 0 9.18265e-06 0.00137651 0.0029894 0 1.34895e-05 0.000872507 0.985508 0.00284872 0.00244804 0.00201865 13417 921
CCT AGG 0.00128671 0 3.46714e-06 0.000698917 0.000919822 0 3.80141e-06 1.1312e-05 0.995901 0.000282807 0.000529706 0.000362143 30522 1331
CGA TCG 6.9487e-05 2.5166e-05 0 0.00350753 0.00415791 1.85943e-05 0 0.00141953 0.985904 0.00317772 0.000600596 0.00111979 7212 500
CGC GCG 0.00369459 0.000182811 0 0.00592778 0.00380906 8.66319e-06 0 0.00433147 0.97604 0.00212952 0.00188724 0.0019885 11613 1058
CGG CCG 0.000872507 1.34895e-05 0 0.0029894 0.00137651 9.18265e-06 0 0.00191563 0.985508 0.00284872 0.00244804 0.00201865 13417 921
CGT ACG 0.00165205 0.000106411 0 0.00331027 0.00363353 1.20165e-05 0 0.00273575 0.981336 0.00256546 0.00256692 0.00208198 8680 718
CTA TAG 1.86553e-05 2.56187e-05 1.27084e-05 0 1.22045e-05 0.000462098 8.31183e-06 0 0.997806 0.00066071 0.00074827 0.000245505 12626 319
CTC GAG 3.5255e-05 0.000384376 6.41606e-06 0 3.62655e-06 9.68527e-05 3.7201e-06 0 0.998506 5.39532e-05 0.000548526 0.000360792 27917 681
CTG CAG 3.60595e-06 0.000289807 1.19272e-05 0 2.61873e-06 0.000404848 4.01104e-06 0 0.99712 0.000683212 0.00055501 0.00092465 38585 1083
CTT AAG 4.397e-06 0.000227795 4.90803e-06 0 3.93701e-06 3.00481e-05 3.78898e-06 0 0.998595 0.00022142 0.000505963 0.000403232 27503 632
GAA TTC 0 3.83852e-06 0.000200244 3.70801e-06 0 3.76498e-06 0.00014471 3.70246e-06 0.999175 1.95872e-05 0.000294211 0.00015161 27042 431
GAC GTC 0 5.87597e-06 0.000132077 5.68077e-06 0 6.48837e-06 4.04895e-05 5.70892e-06 0.998424 8.80222e-05 0.000845208 0.000446128 17613 321
GAG CTC 0 3.7201e-06 9.68527e-05 3.62655e-06 0 6.41606e-06 0.000384376 3.5255e-05 0.998506 5.39532e-05 0.000548526 0.000360792 27917 681
GAT ATC 0 6.87217e-06 0.000249172 5.91764e-06 0 6.25942e-06 1.92686e-05 6.59857e-06 0.99837 9.11902e-05 0.000605966 0.000639197 16901 290
GCA TGC 0.00279642 0 3.87337e-06 0.000522796 0.00360432 0 4.07683e-06 0.00152027 0.990582 6.12752e-05 0.000598109 0.000306597 26416 1793
GCC GGC 0.00247554 0 3.65335e-06 0.00124195 0.00406895 0 6.73596e-06 0.000981444 0.990012 6.60539e-05 0.000741532 0.000401774 27640 1635
GCG CGC 0.00433147 0 8.66319e-06 0.00380906 0.00592778 0 0.000182811 0.00369459 0.97604 0.00212952 0.00188724 0.0019885 11613 1058
GCT AGC 0.00337441 0 4.55011e-06 0.000611965 0.00431744 0 8.4536e-06 0.000381936 0.990109 6.34933e-05 0.000821764 0.000306682 26507 1603
GGA TCC 1.89486e-05 4.12659e-06 0 0.00112092 3.1354e-05 4.03154e-06 0 0.000478815 0.997316 0.000372997 0.000380082 0.000272865 26941 916
GGC GCC 0.000981444 6.73596e-06 0 0.00406895 0.00124195 3.65335e-06 0 0.00247554 0.990012 6.60539e-05 0.000741532 0.000401774 27640 1635
GGG CCC 1.6909e-05 3.5002e-06 0 0.000880267 0.000860768 3.37937e-06 0 0.000178754 0.996728 0.000202954 0.000688381 0.000436676 29983 1033
GGT ACC 0.000363483 5.17989e-06 0 0.00197171 0.000653052 5.25107e-06 0 0.000922965 0.994656 0.000672657 0.000497066 0.000252618 20186 975
GTA TAC 7.45912e-06 1.15197e-05 8.98654e-06 0 7.95369e-06 4.72197e-05 2.87436e-05 0 0.998616 4.51792e-05 0.000482771 0.000743729 13578 261
GTC GAC 5.70892e-06 4.04895e-05 6.48837e-06 0 5.68077e-06 0.000132077 5.87597e-06 0 0.998424 8.80222e-05 0.000845208 0.000446128 17613 321
GTG CAC 6.14287e-06 7.58368e-05 4.25148e-06 0 3.89878e-06 1.81338e-05 4.95292e-06 0 0.997064 0.00092803 0.000826748 0.00106845 25775 572
GTT AAC 5.35054e-06 9.37766e-06 5.89409e-05 0 6.32042e-06 1.10074e-05 5.95882e-06 0 0.998954 0.000519555 0.000158015 0.000271782 18747 300
TAA TTA 0 7.95599e-06 5.18531e-05 8.03141e-06 0 5.2152e-06 1.20293e-05 9.17815e-05 0.998285 6.66126e-05 0.000977241 0.000494748 20408 350
TAC GTA 0 2.87436e-05 4.72197e-05 7.95369e-06 0 8.98654e-06 1.15197e-05 7.45912e-06 0.998616 4.51792e-05 0.000482771 0.000743729 13578 261
TAG CTA 0 8.31183e-06 0.000462098 1.22045e-05 0 1.27084e-05 2.56187e-05 1.86553e-05 0.997806 0.00066071 0.00074827 0.000245505 12626 319
TAT ATA 0 1.41382e-05 7.21872e-06 6.08896e-06 0 7.01018e-06 1.03671e-05 1.21918e-05 0.998204 0.000199562 0.00136514 0.000174685 17741 321
TCA TGA 0.00116385 0 4.18716e-06 2.19684e-05 0.00227088 0 2.9957e-05 0.00016199 0.995305 5.43273e-05 0.000682595 0.000304899 25822 1135
TCC GGA 0.000478815 0 4.03154e-06 3.1354e-05 0.00112092 0 4.12659e-06 1.89486e-05 0.997316 0.000372997 0.000380082 0.000272865 26941 916
TCG CGA 0.00141953 0 1.85943e-05 0.00415791 0.00350753 0 2.5166e-05 6.9487e-05 0.985904 0.00317772 0.000600596 0.00111979 7212 500
TCT AGA 0.00106157 0 3.40893e-06 0.000444644 0.00129213 0 4.33892e-06 0.000114127 0.996038 0.000226558 0.000460082 0.00035475 29498 1074
TGA TCA 0.00016199 2.9957e-05 0 0.00227088 2.19684e-05 4.18716e-06 0 0.00116385 0.995305 5.43273e-05 0.000682595 0.000304899 25822 1135
TGC GCA 0.00152027 4.07683e-06 0 0.00360432 0.000522796 3.87337e-06 0 0.00279642 0.990582 6.12752e-05 0.000598109 0.000306597 26416 1793
TGG CCA 0.000231126 3.73711e-06 0 0.00222342 0.000547633 3.48728e-06 0 0.00176409 0.994458 3.25704e-05 0.000570483 0.000165315 30839 1521
TGT ACA 5.83574e-05 3.85224e-06 0 0.0032908 0.000556589 6.05495e-06 0 0.00302354 0.991837 8.54012e-05 0.000835649 0.000302552 26771 1516
TTA TAA 9.17815e-05 1.20293e-05 5.2152e-06 0 8.03141e-06 5.18531e-05 7.95599e-06 0 0.998285 6.66126e-05 0.000977241 0.000494748 20408 350
TTC GAA 3.70246e-06 0.00014471 3.76498e-06 0 3.70801e-06 0.000200244 3.83852e-06 0 0.999175 1.95872e-05 0.000294211 0.00015161 27042 431
TTG CAA 4.44333e-06 7.12578e-06 3.13317e-05 0 4.59246e-06 4.70951e-05 7.62596e-06 0 0.998809 0.000264166 0.000422182 0.0004027 22596 417
TTT AAA 2.93794e-06 7.59483e-05 4.36616e-06 0 2.96191e-06 1.86013e-05 3.44815e-06 0 0.998858 8.4978e-05 0.000682969 0.000265663 39999 559
66 rows