Downloading: s3://natera-platform-sandbox/pipeline-resources/ngi-igenomes/igenomes/Homo_sapiens/GATK/GRCh38/Sequence/WholeGenomeFasta/Homo_sapiens_assembly38.fasta
  Downloading: s3://natera-platform-sandbox/pipeline-resources/AIH/dna_daq/stored-normals/reference-NA12878-downsampled-500k.bam
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/91/623cc82d62e918c1dc807dfcaf87e3/.command.sh
  Downloading: s3://natera-platform-sandbox/pipeline-resources/ngi-igenomes/igenomes/Homo_sapiens/GATK/GRCh38/Sequence/WholeGenomeFasta/Homo_sapiens_assembly38.fasta.fai
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/50/509fa580b3dd16e8438dcd8edd0905/Sig_18_tissue.recalibrated.bam
  Downloading: s3://natera-platform-sandbox/pipeline-resources/AIH/dna_daq/stored-normals/reference-NA12878-downsampled-500k.bam.bai
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/50/509fa580b3dd16e8438dcd8edd0905/Sig_18_tissue.recalibrated.bam.bai
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/91/623cc82d62e918c1dc807dfcaf87e3/.command.run
  Downloading: s3://natera-platform-sandbox/pipeline-resources/ngi-igenomes/igenomes/Homo_sapiens/GATK/GRCh38/Annotation/intervals/altera_padded_intervals/scatter/chr1_68991-70108.bed.gz
  Downloading: s3://natera-platform-sandbox/pipeline-resources/ngi-igenomes/igenomes/Homo_sapiens/GATK/GRCh38/Annotation/intervals/altera_padded_intervals/scatter/chr1_68991-70108.bed.gz.tbi
==> STAGING COMPLETE (10 inputs)


Successfully created workflow run script.
To execute the workflow, run the following script and set appropriate options:

/var/tmp/strelka/runWorkflow.py
[2026-06-05T13:59:51.131995Z] [nf-91623cc82d62e918c1dc807dfcaf87e3-a1b60-mpw9k] [640_1] [WorkflowRunner] Initiating pyFlow run
[2026-06-05T13:59:51.141170Z] [nf-91623cc82d62e918c1dc807dfcaf87e3-a1b60-mpw9k] [640_1] [WorkflowRunner] pyFlowClientWorkflowClass: StrelkaSomaticWorkflow
[2026-06-05T13:59:51.141205Z] [nf-91623cc82d62e918c1dc807dfcaf87e3-a1b60-mpw9k] [640_1] [WorkflowRunner] pyFlowVersion: 1.1.20
[2026-06-05T13:59:51.141210Z] [nf-91623cc82d62e918c1dc807dfcaf87e3-a1b60-mpw9k] [640_1] [WorkflowRunner] pythonVersion: 2.7.15.final.0
[2026-06-05T13:59:51.141216Z] [nf-91623cc82d62e918c1dc807dfcaf87e3-a1b60-mpw9k] [640_1] [WorkflowRunner] WorkingDir: '/tmp/nxf.XXXXOKT8wK'
[2026-06-05T13:59:51.141221Z] [nf-91623cc82d62e918c1dc807dfcaf87e3-a1b60-mpw9k] [640_1] [WorkflowRunner] ProcessCmdLine: '/var/tmp/strelka/runWorkflow.py -m local -j 8'
[2026-06-05T13:59:51.141227Z] [nf-91623cc82d62e918c1dc807dfcaf87e3-a1b60-mpw9k] [640_1] [WorkflowRunner] [RunParameters] mode: local
[2026-06-05T13:59:51.141231Z] [nf-91623cc82d62e918c1dc807dfcaf87e3-a1b60-mpw9k] [640_1] [WorkflowRunner] [RunParameters] nCores: 8
[2026-06-05T13:59:51.141235Z] [nf-91623cc82d62e918c1dc807dfcaf87e3-a1b60-mpw9k] [640_1] [WorkflowRunner] [RunParameters] memMb: 1547931
[2026-06-05T13:59:51.141239Z] [nf-91623cc82d62e918c1dc807dfcaf87e3-a1b60-mpw9k] [640_1] [WorkflowRunner] [RunParameters] dataDir: /var/tmp/strelka/workspace/pyflow.data
[2026-06-05T13:59:51.141242Z] [nf-91623cc82d62e918c1dc807dfcaf87e3-a1b60-mpw9k] [640_1] [WorkflowRunner] [RunParameters] isDryRun: False
[2026-06-05T13:59:51.141246Z] [nf-91623cc82d62e918c1dc807dfcaf87e3-a1b60-mpw9k] [640_1] [WorkflowRunner] [RunParameters] isContinue: False
[2026-06-05T13:59:51.141249Z] [nf-91623cc82d62e918c1dc807dfcaf87e3-a1b60-mpw9k] [640_1] [WorkflowRunner] [RunParameters] isForceContinue: True
[2026-06-05T13:59:51.141253Z] [nf-91623cc82d62e918c1dc807dfcaf87e3-a1b60-mpw9k] [640_1] [WorkflowRunner] [RunParameters] mailTo: ''
[2026-06-05T13:59:51.142075Z] [nf-91623cc82d62e918c1dc807dfcaf87e3-a1b60-mpw9k] [640_1] [TaskRunner:masterWorkflow] Starting task specification for master workflow
[2026-06-05T13:59:51.142137Z] [nf-91623cc82d62e918c1dc807dfcaf87e3-a1b60-mpw9k] [640_1] [StrelkaSomaticWorkflow] Initiating Strelka somatic workflow version: 2.9.10
[2026-06-05T13:59:51.148368Z] [nf-91623cc82d62e918c1dc807dfcaf87e3-a1b60-mpw9k] [640_1] [WorkflowRunner] Adding sub-workflow task 'CallGenome' to master workflow
[2026-06-05T13:59:51.149205Z] [nf-91623cc82d62e918c1dc807dfcaf87e3-a1b60-mpw9k] [640_1] [TaskManager] Launching sub-workflow task: 'CallGenome' from master workflow
[2026-06-05T13:59:51.149363Z] [nf-91623cc82d62e918c1dc807dfcaf87e3-a1b60-mpw9k] [640_1] [TaskRunner:masterWorkflow] Finished task specification for master workflow
[2026-06-05T13:59:51.149599Z] [nf-91623cc82d62e918c1dc807dfcaf87e3-a1b60-mpw9k] [640_1] [TaskRunner:CallGenome] Starting task specification for sub-workflow
[2026-06-05T13:59:51.149797Z] [nf-91623cc82d62e918c1dc807dfcaf87e3-a1b60-mpw9k] [640_1] [WorkflowRunner] Adding command task 'CallGenome+makeTmpDir' to sub-workflow 'CallGenome'
[2026-06-05T13:59:51.150495Z] [nf-91623cc82d62e918c1dc807dfcaf87e3-a1b60-mpw9k] [640_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0000' to sub-workflow 'CallGenome'
[2026-06-05T13:59:51.150658Z] [nf-91623cc82d62e918c1dc807dfcaf87e3-a1b60-mpw9k] [640_1] [TaskManager] Launching command task: 'CallGenome+makeTmpDir' from sub-workflow 'CallGenome'
[2026-06-05T13:59:51.150806Z] [nf-91623cc82d62e918c1dc807dfcaf87e3-a1b60-mpw9k] [640_1] [WorkflowRunner] Adding command task 'CallGenome+fixVcfHeader_chromId_000_chr1_0000' to sub-workflow 'CallGenome'
[2026-06-05T13:59:51.151016Z] [nf-91623cc82d62e918c1dc807dfcaf87e3-a1b60-mpw9k] [640_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0000' to sub-workflow 'CallGenome'
[2026-06-05T13:59:51.151369Z] [nf-91623cc82d62e918c1dc807dfcaf87e3-a1b60-mpw9k] [640_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0001' to sub-workflow 'CallGenome'
[2026-06-05T13:59:51.151600Z] [nf-91623cc82d62e918c1dc807dfcaf87e3-a1b60-mpw9k] [640_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0001' to sub-workflow 'CallGenome'
[2026-06-05T13:59:51.151762Z] [nf-91623cc82d62e918c1dc807dfcaf87e3-a1b60-mpw9k] [640_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0002' to sub-workflow 'CallGenome'
[2026-06-05T13:59:51.153566Z] [nf-91623cc82d62e918c1dc807dfcaf87e3-a1b60-mpw9k] [640_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0002' to sub-workflow 'CallGenome'
[2026-06-05T13:59:51.153892Z] [nf-91623cc82d62e918c1dc807dfcaf87e3-a1b60-mpw9k] [640_1] [TaskRunner:CallGenome+makeTmpDir] Task initiated on local node
[2026-06-05T13:59:51.154527Z] [nf-91623cc82d62e918c1dc807dfcaf87e3-a1b60-mpw9k] [640_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0003' to sub-workflow 'CallGenome'
[2026-06-05T13:59:51.154641Z] [nf-91623cc82d62e918c1dc807dfcaf87e3-a1b60-mpw9k] [640_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0003' to sub-workflow 'CallGenome'
[2026-06-05T13:59:51.154775Z] [nf-91623cc82d62e918c1dc807dfcaf87e3-a1b60-mpw9k] [640_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0004' to sub-workflow 'CallGenome'
[2026-06-05T13:59:51.154842Z] [nf-91623cc82d62e918c1dc807dfcaf87e3-a1b60-mpw9k] [640_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0004' to sub-workflow 'CallGenome'
[2026-06-05T13:59:51.154960Z] [nf-91623cc82d62e918c1dc807dfcaf87e3-a1b60-mpw9k] [640_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0005' to sub-workflow 'CallGenome'
[2026-06-05T13:59:51.155025Z] [nf-91623cc82d62e918c1dc807dfcaf87e3-a1b60-mpw9k] [640_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0005' to sub-workflow 'CallGenome'
[2026-06-05T13:59:51.155137Z] [nf-91623cc82d62e918c1dc807dfcaf87e3-a1b60-mpw9k] [640_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0006' to sub-workflow 'CallGenome'
[2026-06-05T13:59:51.155204Z] [nf-91623cc82d62e918c1dc807dfcaf87e3-a1b60-mpw9k] [640_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0006' to sub-workflow 'CallGenome'
[2026-06-05T13:59:51.155320Z] [nf-91623cc82d62e918c1dc807dfcaf87e3-a1b60-mpw9k] [640_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0007' to sub-workflow 'CallGenome'
[2026-06-05T13:59:51.155404Z] [nf-91623cc82d62e918c1dc807dfcaf87e3-a1b60-mpw9k] [640_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0007' to sub-workflow 'CallGenome'
[2026-06-05T13:59:51.155976Z] [nf-91623cc82d62e918c1dc807dfcaf87e3-a1b60-mpw9k] [640_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0008' to sub-workflow 'CallGenome'
[2026-06-05T13:59:51.156115Z] [nf-91623cc82d62e918c1dc807dfcaf87e3-a1b60-mpw9k] [640_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0008' to sub-workflow 'CallGenome'
[2026-06-05T13:59:51.156266Z] [nf-91623cc82d62e918c1dc807dfcaf87e3-a1b60-mpw9k] [640_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0009' to sub-workflow 'CallGenome'
[2026-06-05T13:59:51.156343Z] [nf-91623cc82d62e918c1dc807dfcaf87e3-a1b60-mpw9k] [640_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0009' to sub-workflow 'CallGenome'
[2026-06-05T13:59:51.156460Z] [nf-91623cc82d62e918c1dc807dfcaf87e3-a1b60-mpw9k] [640_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0010' to sub-workflow 'CallGenome'
[2026-06-05T13:59:51.156525Z] [nf-91623cc82d62e918c1dc807dfcaf87e3-a1b60-mpw9k] [640_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0010' to sub-workflow 'CallGenome'
[2026-06-05T13:59:51.156646Z] [nf-91623cc82d62e918c1dc807dfcaf87e3-a1b60-mpw9k] [640_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0011' to sub-workflow 'CallGenome'
[2026-06-05T13:59:51.156709Z] [nf-91623cc82d62e918c1dc807dfcaf87e3-a1b60-mpw9k] [640_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0011' to sub-workflow 'CallGenome'
[2026-06-05T13:59:51.156825Z] [nf-91623cc82d62e918c1dc807dfcaf87e3-a1b60-mpw9k] [640_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0012' to sub-workflow 'CallGenome'
[2026-06-05T13:59:51.156896Z] [nf-91623cc82d62e918c1dc807dfcaf87e3-a1b60-mpw9k] [640_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0012' to sub-workflow 'CallGenome'
[2026-06-05T13:59:51.157372Z] [nf-91623cc82d62e918c1dc807dfcaf87e3-a1b60-mpw9k] [640_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0013' to sub-workflow 'CallGenome'
[2026-06-05T13:59:51.157480Z] [nf-91623cc82d62e918c1dc807dfcaf87e3-a1b60-mpw9k] [640_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0013' to sub-workflow 'CallGenome'
[2026-06-05T13:59:51.157603Z] [nf-91623cc82d62e918c1dc807dfcaf87e3-a1b60-mpw9k] [640_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0014' to sub-workflow 'CallGenome'
[2026-06-05T13:59:51.157665Z] [nf-91623cc82d62e918c1dc807dfcaf87e3-a1b60-mpw9k] [640_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0014' to sub-workflow 'CallGenome'
[2026-06-05T13:59:51.157777Z] [nf-91623cc82d62e918c1dc807dfcaf87e3-a1b60-mpw9k] [640_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0015' to sub-workflow 'CallGenome'
[2026-06-05T13:59:51.157841Z] [nf-91623cc82d62e918c1dc807dfcaf87e3-a1b60-mpw9k] [640_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0015' to sub-workflow 'CallGenome'
[2026-06-05T13:59:51.157952Z] [nf-91623cc82d62e918c1dc807dfcaf87e3-a1b60-mpw9k] [640_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0016' to sub-workflow 'CallGenome'
[2026-06-05T13:59:51.158017Z] [nf-91623cc82d62e918c1dc807dfcaf87e3-a1b60-mpw9k] [640_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0016' to sub-workflow 'CallGenome'
[2026-06-05T13:59:51.158130Z] [nf-91623cc82d62e918c1dc807dfcaf87e3-a1b60-mpw9k] [640_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0017' to sub-workflow 'CallGenome'
[2026-06-05T13:59:51.158192Z] [nf-91623cc82d62e918c1dc807dfcaf87e3-a1b60-mpw9k] [640_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0017' to sub-workflow 'CallGenome'
[2026-06-05T13:59:51.158345Z] [nf-91623cc82d62e918c1dc807dfcaf87e3-a1b60-mpw9k] [640_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0018' to sub-workflow 'CallGenome'
[2026-06-05T13:59:51.158597Z] [nf-91623cc82d62e918c1dc807dfcaf87e3-a1b60-mpw9k] [640_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0018' to sub-workflow 'CallGenome'
[2026-06-05T13:59:51.159011Z] [nf-91623cc82d62e918c1dc807dfcaf87e3-a1b60-mpw9k] [640_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0019' to sub-workflow 'CallGenome'
[2026-06-05T13:59:51.159078Z] [nf-91623cc82d62e918c1dc807dfcaf87e3-a1b60-mpw9k] [640_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0019' to sub-workflow 'CallGenome'
[2026-06-05T13:59:51.159587Z] [nf-91623cc82d62e918c1dc807dfcaf87e3-a1b60-mpw9k] [640_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0020' to sub-workflow 'CallGenome'
[2026-06-05T13:59:51.159659Z] [nf-91623cc82d62e918c1dc807dfcaf87e3-a1b60-mpw9k] [640_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0020' to sub-workflow 'CallGenome'
[2026-06-05T13:59:51.159786Z] [nf-91623cc82d62e918c1dc807dfcaf87e3-a1b60-mpw9k] [640_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0000' to sub-workflow 'CallGenome'
[2026-06-05T13:59:51.159859Z] [nf-91623cc82d62e918c1dc807dfcaf87e3-a1b60-mpw9k] [640_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0000' to sub-workflow 'CallGenome'
[2026-06-05T13:59:51.160109Z] [nf-91623cc82d62e918c1dc807dfcaf87e3-a1b60-mpw9k] [640_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0001' to sub-workflow 'CallGenome'
[2026-06-05T13:59:51.160583Z] [nf-91623cc82d62e918c1dc807dfcaf87e3-a1b60-mpw9k] [640_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0001' to sub-workflow 'CallGenome'
[2026-06-05T13:59:51.160707Z] [nf-91623cc82d62e918c1dc807dfcaf87e3-a1b60-mpw9k] [640_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0002' to sub-workflow 'CallGenome'
[2026-06-05T13:59:51.160795Z] [nf-91623cc82d62e918c1dc807dfcaf87e3-a1b60-mpw9k] [640_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0002' to sub-workflow 'CallGenome'
[2026-06-05T13:59:51.160963Z] [nf-91623cc82d62e918c1dc807dfcaf87e3-a1b60-mpw9k] [640_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0003' to sub-workflow 'CallGenome'
[2026-06-05T13:59:51.161040Z] [nf-91623cc82d62e918c1dc807dfcaf87e3-a1b60-mpw9k] [640_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0003' to sub-workflow 'CallGenome'
[2026-06-05T13:59:51.161180Z] [nf-91623cc82d62e918c1dc807dfcaf87e3-a1b60-mpw9k] [640_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0004' to sub-workflow 'CallGenome'
[2026-06-05T13:59:51.161257Z] [nf-91623cc82d62e918c1dc807dfcaf87e3-a1b60-mpw9k] [640_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0004' to sub-workflow 'CallGenome'
[2026-06-05T13:59:51.161402Z] [nf-91623cc82d62e918c1dc807dfcaf87e3-a1b60-mpw9k] [640_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0005' to sub-workflow 'CallGenome'
[2026-06-05T13:59:51.161484Z] [nf-91623cc82d62e918c1dc807dfcaf87e3-a1b60-mpw9k] [640_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0005' to sub-workflow 'CallGenome'
[2026-06-05T13:59:51.161593Z] [nf-91623cc82d62e918c1dc807dfcaf87e3-a1b60-mpw9k] [640_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0006' to sub-workflow 'CallGenome'
[2026-06-05T13:59:51.161659Z] [nf-91623cc82d62e918c1dc807dfcaf87e3-a1b60-mpw9k] [640_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0006' to sub-workflow 'CallGenome'
[2026-06-05T13:59:51.161992Z] [nf-91623cc82d62e918c1dc807dfcaf87e3-a1b60-mpw9k] [640_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0007' to sub-workflow 'CallGenome'
[2026-06-05T13:59:51.162445Z] [nf-91623cc82d62e918c1dc807dfcaf87e3-a1b60-mpw9k] [640_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0007' to sub-workflow 'CallGenome'
[2026-06-05T13:59:51.162561Z] [nf-91623cc82d62e918c1dc807dfcaf87e3-a1b60-mpw9k] [640_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0008' to sub-workflow 'CallGenome'
[2026-06-05T13:59:51.162644Z] [nf-91623cc82d62e918c1dc807dfcaf87e3-a1b60-mpw9k] [640_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0008' to sub-workflow 'CallGenome'
[2026-06-05T13:59:51.162757Z] [nf-91623cc82d62e918c1dc807dfcaf87e3-a1b60-mpw9k] [640_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0009' to sub-workflow 'CallGenome'
[2026-06-05T13:59:51.162824Z] [nf-91623cc82d62e918c1dc807dfcaf87e3-a1b60-mpw9k] [640_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0009' to sub-workflow 'CallGenome'
[2026-06-05T13:59:51.162933Z] [nf-91623cc82d62e918c1dc807dfcaf87e3-a1b60-mpw9k] [640_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0010' to sub-workflow 'CallGenome'
[2026-06-05T13:59:51.162995Z] [nf-91623cc82d62e918c1dc807dfcaf87e3-a1b60-mpw9k] [640_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0010' to sub-workflow 'CallGenome'
[2026-06-05T13:59:51.177629Z] [nf-91623cc82d62e918c1dc807dfcaf87e3-a1b60-mpw9k] [640_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0011' to sub-workflow 'CallGenome'
[2026-06-05T13:59:51.177809Z] [nf-91623cc82d62e918c1dc807dfcaf87e3-a1b60-mpw9k] [640_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0011' to sub-workflow 'CallGenome'
[2026-06-05T13:59:51.178108Z] [nf-91623cc82d62e918c1dc807dfcaf87e3-a1b60-mpw9k] [640_1] [WorkflowRunner] Adding command task 'CallGenome+completedAllGenomeSegments' to sub-workflow 'CallGenome'
[2026-06-05T13:59:51.178630Z] [nf-91623cc82d62e918c1dc807dfcaf87e3-a1b60-mpw9k] [640_1] [WorkflowRunner] Adding command task 'CallGenome+SNV_concat_vcf' to sub-workflow 'CallGenome'
[2026-06-05T13:59:51.178703Z] [nf-91623cc82d62e918c1dc807dfcaf87e3-a1b60-mpw9k] [640_1] [WorkflowRunner] Adding command task 'CallGenome+SNV_index_vcf' to sub-workflow 'CallGenome'
[2026-06-05T13:59:51.178796Z] [nf-91623cc82d62e918c1dc807dfcaf87e3-a1b60-mpw9k] [640_1] [WorkflowRunner] Adding command task 'CallGenome+Indel_concat_vcf' to sub-workflow 'CallGenome'
[2026-06-05T13:59:51.178867Z] [nf-91623cc82d62e918c1dc807dfcaf87e3-a1b60-mpw9k] [640_1] [WorkflowRunner] Adding command task 'CallGenome+Indel_index_vcf' to sub-workflow 'CallGenome'
[2026-06-05T13:59:51.180624Z] [nf-91623cc82d62e918c1dc807dfcaf87e3-a1b60-mpw9k] [640_1] [WorkflowRunner] Adding command task 'CallGenome+mergeRunStats' to sub-workflow 'CallGenome'
[2026-06-05T13:59:51.181441Z] [nf-91623cc82d62e918c1dc807dfcaf87e3-a1b60-mpw9k] [640_1] [WorkflowRunner] Adding command task 'CallGenome+removeTmpDir' to sub-workflow 'CallGenome'
[2026-06-05T13:59:51.181538Z] [nf-91623cc82d62e918c1dc807dfcaf87e3-a1b60-mpw9k] [640_1] [TaskRunner:CallGenome] Finished task specification for sub-workflow
[2026-06-05T13:59:51.182862Z] [nf-91623cc82d62e918c1dc807dfcaf87e3-a1b60-mpw9k] [640_1] [TaskManager] Completed command task: 'CallGenome+makeTmpDir' launched from sub-workflow 'CallGenome'
[2026-06-05T13:59:51.183497Z] [nf-91623cc82d62e918c1dc807dfcaf87e3-a1b60-mpw9k] [640_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0004' from sub-workflow 'CallGenome'
[2026-06-05T13:59:51.184578Z] [nf-91623cc82d62e918c1dc807dfcaf87e3-a1b60-mpw9k] [640_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0003' from sub-workflow 'CallGenome'
[2026-06-05T13:59:51.187282Z] [nf-91623cc82d62e918c1dc807dfcaf87e3-a1b60-mpw9k] [640_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0019' from sub-workflow 'CallGenome'
[2026-06-05T13:59:51.188563Z] [nf-91623cc82d62e918c1dc807dfcaf87e3-a1b60-mpw9k] [640_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0004] Task initiated on local node
[2026-06-05T13:59:51.190185Z] [nf-91623cc82d62e918c1dc807dfcaf87e3-a1b60-mpw9k] [640_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0017' from sub-workflow 'CallGenome'
[2026-06-05T13:59:51.190403Z] [nf-91623cc82d62e918c1dc807dfcaf87e3-a1b60-mpw9k] [640_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0003] Task initiated on local node
[2026-06-05T13:59:51.192103Z] [nf-91623cc82d62e918c1dc807dfcaf87e3-a1b60-mpw9k] [640_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0001' from sub-workflow 'CallGenome'
[2026-06-05T13:59:51.194506Z] [nf-91623cc82d62e918c1dc807dfcaf87e3-a1b60-mpw9k] [640_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0019] Task initiated on local node
[2026-06-05T13:59:51.195177Z] [nf-91623cc82d62e918c1dc807dfcaf87e3-a1b60-mpw9k] [640_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0009' from sub-workflow 'CallGenome'
[2026-06-05T13:59:51.198454Z] [nf-91623cc82d62e918c1dc807dfcaf87e3-a1b60-mpw9k] [640_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0017] Task initiated on local node
[2026-06-05T13:59:51.198795Z] [nf-91623cc82d62e918c1dc807dfcaf87e3-a1b60-mpw9k] [640_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0020' from sub-workflow 'CallGenome'
[2026-06-05T13:59:51.203080Z] [nf-91623cc82d62e918c1dc807dfcaf87e3-a1b60-mpw9k] [640_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0009] Task initiated on local node
[2026-06-05T13:59:51.204097Z] [nf-91623cc82d62e918c1dc807dfcaf87e3-a1b60-mpw9k] [640_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0011' from sub-workflow 'CallGenome'
[2026-06-05T13:59:51.204711Z] [nf-91623cc82d62e918c1dc807dfcaf87e3-a1b60-mpw9k] [640_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0001] Task initiated on local node
[2026-06-05T13:59:51.209235Z] [nf-91623cc82d62e918c1dc807dfcaf87e3-a1b60-mpw9k] [640_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0020] Task initiated on local node
[2026-06-05T13:59:51.211766Z] [nf-91623cc82d62e918c1dc807dfcaf87e3-a1b60-mpw9k] [640_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0011] Task initiated on local node
[2026-06-05T13:59:51.320316Z] [nf-91623cc82d62e918c1dc807dfcaf87e3-a1b60-mpw9k] [640_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0011' launched from sub-workflow 'CallGenome'
[2026-06-05T13:59:51.321323Z] [nf-91623cc82d62e918c1dc807dfcaf87e3-a1b60-mpw9k] [640_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0008' from sub-workflow 'CallGenome'
[2026-06-05T13:59:51.325688Z] [nf-91623cc82d62e918c1dc807dfcaf87e3-a1b60-mpw9k] [640_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0008] Task initiated on local node
[2026-06-05T13:59:52.137995Z] [nf-91623cc82d62e918c1dc807dfcaf87e3-a1b60-mpw9k] [640_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0003' launched from sub-workflow 'CallGenome'
[2026-06-05T13:59:52.138976Z] [nf-91623cc82d62e918c1dc807dfcaf87e3-a1b60-mpw9k] [640_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0014' from sub-workflow 'CallGenome'
[2026-06-05T13:59:52.142769Z] [nf-91623cc82d62e918c1dc807dfcaf87e3-a1b60-mpw9k] [640_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0014] Task initiated on local node
[2026-06-05T13:59:52.705691Z] [nf-91623cc82d62e918c1dc807dfcaf87e3-a1b60-mpw9k] [640_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0008' launched from sub-workflow 'CallGenome'
[2026-06-05T13:59:52.706648Z] [nf-91623cc82d62e918c1dc807dfcaf87e3-a1b60-mpw9k] [640_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0008' from sub-workflow 'CallGenome'
[2026-06-05T13:59:52.709951Z] [nf-91623cc82d62e918c1dc807dfcaf87e3-a1b60-mpw9k] [640_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0008] Task initiated on local node
[2026-06-05T13:59:52.821952Z] [nf-91623cc82d62e918c1dc807dfcaf87e3-a1b60-mpw9k] [640_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0008' launched from sub-workflow 'CallGenome'
[2026-06-05T13:59:52.822885Z] [nf-91623cc82d62e918c1dc807dfcaf87e3-a1b60-mpw9k] [640_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0000' from sub-workflow 'CallGenome'
[2026-06-05T13:59:52.826339Z] [nf-91623cc82d62e918c1dc807dfcaf87e3-a1b60-mpw9k] [640_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0000] Task initiated on local node
[2026-06-05T13:59:53.539220Z] [nf-91623cc82d62e918c1dc807dfcaf87e3-a1b60-mpw9k] [640_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0004' launched from sub-workflow 'CallGenome'
[2026-06-05T13:59:53.540166Z] [nf-91623cc82d62e918c1dc807dfcaf87e3-a1b60-mpw9k] [640_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0006' from sub-workflow 'CallGenome'
[2026-06-05T13:59:53.543774Z] [nf-91623cc82d62e918c1dc807dfcaf87e3-a1b60-mpw9k] [640_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0006] Task initiated on local node
[2026-06-05T13:59:53.704973Z] [nf-91623cc82d62e918c1dc807dfcaf87e3-a1b60-mpw9k] [640_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0020' launched from sub-workflow 'CallGenome'
[2026-06-05T13:59:53.705892Z] [nf-91623cc82d62e918c1dc807dfcaf87e3-a1b60-mpw9k] [640_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0005' from sub-workflow 'CallGenome'
[2026-06-05T13:59:53.709010Z] [nf-91623cc82d62e918c1dc807dfcaf87e3-a1b60-mpw9k] [640_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0005] Task initiated on local node
[2026-06-05T13:59:54.071031Z] [nf-91623cc82d62e918c1dc807dfcaf87e3-a1b60-mpw9k] [640_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0009' launched from sub-workflow 'CallGenome'
[2026-06-05T13:59:54.071833Z] [nf-91623cc82d62e918c1dc807dfcaf87e3-a1b60-mpw9k] [640_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0009' from sub-workflow 'CallGenome'
[2026-06-05T13:59:54.075209Z] [nf-91623cc82d62e918c1dc807dfcaf87e3-a1b60-mpw9k] [640_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0009] Task initiated on local node
[2026-06-05T13:59:54.136083Z] [nf-91623cc82d62e918c1dc807dfcaf87e3-a1b60-mpw9k] [640_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0009' launched from sub-workflow 'CallGenome'
[2026-06-05T13:59:54.136968Z] [nf-91623cc82d62e918c1dc807dfcaf87e3-a1b60-mpw9k] [640_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0000' from sub-workflow 'CallGenome'
[2026-06-05T13:59:54.140322Z] [nf-91623cc82d62e918c1dc807dfcaf87e3-a1b60-mpw9k] [640_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0000] Task initiated on local node
[2026-06-05T13:59:54.352133Z] [nf-91623cc82d62e918c1dc807dfcaf87e3-a1b60-mpw9k] [640_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0017' launched from sub-workflow 'CallGenome'
[2026-06-05T13:59:54.352205Z] [nf-91623cc82d62e918c1dc807dfcaf87e3-a1b60-mpw9k] [640_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0000' launched from sub-workflow 'CallGenome'
[2026-06-05T13:59:54.352977Z] [nf-91623cc82d62e918c1dc807dfcaf87e3-a1b60-mpw9k] [640_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0011' from sub-workflow 'CallGenome'
[2026-06-05T13:59:54.353751Z] [nf-91623cc82d62e918c1dc807dfcaf87e3-a1b60-mpw9k] [640_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0017' from sub-workflow 'CallGenome'
[2026-06-05T13:59:54.357413Z] [nf-91623cc82d62e918c1dc807dfcaf87e3-a1b60-mpw9k] [640_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0011] Task initiated on local node
[2026-06-05T13:59:54.358874Z] [nf-91623cc82d62e918c1dc807dfcaf87e3-a1b60-mpw9k] [640_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0017] Task initiated on local node
[2026-06-05T13:59:54.364329Z] [nf-91623cc82d62e918c1dc807dfcaf87e3-a1b60-mpw9k] [640_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0019' launched from sub-workflow 'CallGenome'
[2026-06-05T13:59:54.365169Z] [nf-91623cc82d62e918c1dc807dfcaf87e3-a1b60-mpw9k] [640_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0019' from sub-workflow 'CallGenome'
[2026-06-05T13:59:54.368118Z] [nf-91623cc82d62e918c1dc807dfcaf87e3-a1b60-mpw9k] [640_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0019] Task initiated on local node
[2026-06-05T13:59:54.397516Z] [nf-91623cc82d62e918c1dc807dfcaf87e3-a1b60-mpw9k] [640_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0011' launched from sub-workflow 'CallGenome'
[2026-06-05T13:59:54.397623Z] [nf-91623cc82d62e918c1dc807dfcaf87e3-a1b60-mpw9k] [640_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0017' launched from sub-workflow 'CallGenome'
[2026-06-05T13:59:54.398915Z] [nf-91623cc82d62e918c1dc807dfcaf87e3-a1b60-mpw9k] [640_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0010' from sub-workflow 'CallGenome'
[2026-06-05T13:59:54.399725Z] [nf-91623cc82d62e918c1dc807dfcaf87e3-a1b60-mpw9k] [640_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0004' from sub-workflow 'CallGenome'
[2026-06-05T13:59:54.400382Z] [nf-91623cc82d62e918c1dc807dfcaf87e3-a1b60-mpw9k] [640_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0019' launched from sub-workflow 'CallGenome'
[2026-06-05T13:59:54.403715Z] [nf-91623cc82d62e918c1dc807dfcaf87e3-a1b60-mpw9k] [640_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0010] Task initiated on local node
[2026-06-05T13:59:54.404691Z] [nf-91623cc82d62e918c1dc807dfcaf87e3-a1b60-mpw9k] [640_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0016' from sub-workflow 'CallGenome'
[2026-06-05T13:59:54.405092Z] [nf-91623cc82d62e918c1dc807dfcaf87e3-a1b60-mpw9k] [640_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0004] Task initiated on local node
[2026-06-05T13:59:54.408187Z] [nf-91623cc82d62e918c1dc807dfcaf87e3-a1b60-mpw9k] [640_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0016] Task initiated on local node
[2026-06-05T13:59:54.437375Z] [nf-91623cc82d62e918c1dc807dfcaf87e3-a1b60-mpw9k] [640_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0004' launched from sub-workflow 'CallGenome'
[2026-06-05T13:59:54.438260Z] [nf-91623cc82d62e918c1dc807dfcaf87e3-a1b60-mpw9k] [640_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0000' from sub-workflow 'CallGenome'
[2026-06-05T13:59:54.441553Z] [nf-91623cc82d62e918c1dc807dfcaf87e3-a1b60-mpw9k] [640_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0000] Task initiated on local node
[2026-06-05T13:59:54.472468Z] [nf-91623cc82d62e918c1dc807dfcaf87e3-a1b60-mpw9k] [640_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0010' launched from sub-workflow 'CallGenome'
[2026-06-05T13:59:54.473179Z] [nf-91623cc82d62e918c1dc807dfcaf87e3-a1b60-mpw9k] [640_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0020' from sub-workflow 'CallGenome'
[2026-06-05T13:59:54.476378Z] [nf-91623cc82d62e918c1dc807dfcaf87e3-a1b60-mpw9k] [640_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0020] Task initiated on local node
[2026-06-05T13:59:54.481398Z] [nf-91623cc82d62e918c1dc807dfcaf87e3-a1b60-mpw9k] [640_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0001' launched from sub-workflow 'CallGenome'
[2026-06-05T13:59:54.482108Z] [nf-91623cc82d62e918c1dc807dfcaf87e3-a1b60-mpw9k] [640_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0003' from sub-workflow 'CallGenome'
[2026-06-05T13:59:54.482739Z] [nf-91623cc82d62e918c1dc807dfcaf87e3-a1b60-mpw9k] [640_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0000' launched from sub-workflow 'CallGenome'
[2026-06-05T13:59:54.484880Z] [nf-91623cc82d62e918c1dc807dfcaf87e3-a1b60-mpw9k] [640_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0010' from sub-workflow 'CallGenome'
[2026-06-05T13:59:54.485472Z] [nf-91623cc82d62e918c1dc807dfcaf87e3-a1b60-mpw9k] [640_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0003] Task initiated on local node
[2026-06-05T13:59:54.488132Z] [nf-91623cc82d62e918c1dc807dfcaf87e3-a1b60-mpw9k] [640_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0010] Task initiated on local node
[2026-06-05T13:59:54.517461Z] [nf-91623cc82d62e918c1dc807dfcaf87e3-a1b60-mpw9k] [640_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0020' launched from sub-workflow 'CallGenome'
[2026-06-05T13:59:54.518250Z] [nf-91623cc82d62e918c1dc807dfcaf87e3-a1b60-mpw9k] [640_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0010' from sub-workflow 'CallGenome'
[2026-06-05T13:59:54.520578Z] [nf-91623cc82d62e918c1dc807dfcaf87e3-a1b60-mpw9k] [640_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0003' launched from sub-workflow 'CallGenome'
[2026-06-05T13:59:54.521455Z] [nf-91623cc82d62e918c1dc807dfcaf87e3-a1b60-mpw9k] [640_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0005' from sub-workflow 'CallGenome'
[2026-06-05T13:59:54.521960Z] [nf-91623cc82d62e918c1dc807dfcaf87e3-a1b60-mpw9k] [640_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0010] Task initiated on local node
[2026-06-05T13:59:54.525123Z] [nf-91623cc82d62e918c1dc807dfcaf87e3-a1b60-mpw9k] [640_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0005] Task initiated on local node
[2026-06-05T13:59:54.529703Z] [nf-91623cc82d62e918c1dc807dfcaf87e3-a1b60-mpw9k] [640_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0010' launched from sub-workflow 'CallGenome'
[2026-06-05T13:59:54.530359Z] [nf-91623cc82d62e918c1dc807dfcaf87e3-a1b60-mpw9k] [640_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0015' from sub-workflow 'CallGenome'
[2026-06-05T13:59:54.533639Z] [nf-91623cc82d62e918c1dc807dfcaf87e3-a1b60-mpw9k] [640_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0015] Task initiated on local node
[2026-06-05T13:59:54.795561Z] [nf-91623cc82d62e918c1dc807dfcaf87e3-a1b60-mpw9k] [640_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0006' launched from sub-workflow 'CallGenome'
[2026-06-05T13:59:54.796351Z] [nf-91623cc82d62e918c1dc807dfcaf87e3-a1b60-mpw9k] [640_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0006' from sub-workflow 'CallGenome'
[2026-06-05T13:59:54.799302Z] [nf-91623cc82d62e918c1dc807dfcaf87e3-a1b60-mpw9k] [640_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0006] Task initiated on local node
[2026-06-05T13:59:54.861917Z] [nf-91623cc82d62e918c1dc807dfcaf87e3-a1b60-mpw9k] [640_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0006' launched from sub-workflow 'CallGenome'
[2026-06-05T13:59:54.862642Z] [nf-91623cc82d62e918c1dc807dfcaf87e3-a1b60-mpw9k] [640_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0012' from sub-workflow 'CallGenome'
[2026-06-05T13:59:54.866151Z] [nf-91623cc82d62e918c1dc807dfcaf87e3-a1b60-mpw9k] [640_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0012] Task initiated on local node
[2026-06-05T13:59:54.894867Z] [nf-91623cc82d62e918c1dc807dfcaf87e3-a1b60-mpw9k] [640_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0005' launched from sub-workflow 'CallGenome'
[2026-06-05T13:59:54.895621Z] [nf-91623cc82d62e918c1dc807dfcaf87e3-a1b60-mpw9k] [640_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0005' from sub-workflow 'CallGenome'
[2026-06-05T13:59:54.898968Z] [nf-91623cc82d62e918c1dc807dfcaf87e3-a1b60-mpw9k] [640_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0005] Task initiated on local node
[2026-06-05T13:59:54.960295Z] [nf-91623cc82d62e918c1dc807dfcaf87e3-a1b60-mpw9k] [640_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0005' launched from sub-workflow 'CallGenome'
[2026-06-05T13:59:54.961112Z] [nf-91623cc82d62e918c1dc807dfcaf87e3-a1b60-mpw9k] [640_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0007' from sub-workflow 'CallGenome'
[2026-06-05T13:59:54.964303Z] [nf-91623cc82d62e918c1dc807dfcaf87e3-a1b60-mpw9k] [640_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0007] Task initiated on local node
[2026-06-05T13:59:55.125806Z] [nf-91623cc82d62e918c1dc807dfcaf87e3-a1b60-mpw9k] [640_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0014' launched from sub-workflow 'CallGenome'
[2026-06-05T13:59:55.125909Z] [nf-91623cc82d62e918c1dc807dfcaf87e3-a1b60-mpw9k] [640_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0010' launched from sub-workflow 'CallGenome'
[2026-06-05T13:59:55.126623Z] [nf-91623cc82d62e918c1dc807dfcaf87e3-a1b60-mpw9k] [640_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0010' from sub-workflow 'CallGenome'
[2026-06-05T13:59:55.128415Z] [nf-91623cc82d62e918c1dc807dfcaf87e3-a1b60-mpw9k] [640_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0014' from sub-workflow 'CallGenome'
[2026-06-05T13:59:55.129943Z] [nf-91623cc82d62e918c1dc807dfcaf87e3-a1b60-mpw9k] [640_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0010] Task initiated on local node
[2026-06-05T13:59:55.131391Z] [nf-91623cc82d62e918c1dc807dfcaf87e3-a1b60-mpw9k] [640_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0014] Task initiated on local node
[2026-06-05T13:59:55.162060Z] [nf-91623cc82d62e918c1dc807dfcaf87e3-a1b60-mpw9k] [640_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0010' launched from sub-workflow 'CallGenome'
[2026-06-05T13:59:55.163134Z] [nf-91623cc82d62e918c1dc807dfcaf87e3-a1b60-mpw9k] [640_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0018' from sub-workflow 'CallGenome'
[2026-06-05T13:59:55.163647Z] [nf-91623cc82d62e918c1dc807dfcaf87e3-a1b60-mpw9k] [640_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0014' launched from sub-workflow 'CallGenome'
[2026-06-05T13:59:55.166076Z] [nf-91623cc82d62e918c1dc807dfcaf87e3-a1b60-mpw9k] [640_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0007' from sub-workflow 'CallGenome'
[2026-06-05T13:59:55.167696Z] [nf-91623cc82d62e918c1dc807dfcaf87e3-a1b60-mpw9k] [640_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0018] Task initiated on local node
[2026-06-05T13:59:55.168723Z] [nf-91623cc82d62e918c1dc807dfcaf87e3-a1b60-mpw9k] [640_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0007] Task initiated on local node
[2026-06-05T13:59:55.230302Z] [nf-91623cc82d62e918c1dc807dfcaf87e3-a1b60-mpw9k] [640_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0007' launched from sub-workflow 'CallGenome'
[2026-06-05T13:59:55.231082Z] [nf-91623cc82d62e918c1dc807dfcaf87e3-a1b60-mpw9k] [640_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0007' from sub-workflow 'CallGenome'
[2026-06-05T13:59:55.234044Z] [nf-91623cc82d62e918c1dc807dfcaf87e3-a1b60-mpw9k] [640_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0007] Task initiated on local node
[2026-06-05T13:59:55.264800Z] [nf-91623cc82d62e918c1dc807dfcaf87e3-a1b60-mpw9k] [640_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0007' launched from sub-workflow 'CallGenome'
[2026-06-05T13:59:55.265508Z] [nf-91623cc82d62e918c1dc807dfcaf87e3-a1b60-mpw9k] [640_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0006' from sub-workflow 'CallGenome'
[2026-06-05T13:59:55.268416Z] [nf-91623cc82d62e918c1dc807dfcaf87e3-a1b60-mpw9k] [640_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0006] Task initiated on local node
[2026-06-05T13:59:55.830945Z] [nf-91623cc82d62e918c1dc807dfcaf87e3-a1b60-mpw9k] [640_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0016' launched from sub-workflow 'CallGenome'
[2026-06-05T13:59:55.831616Z] [nf-91623cc82d62e918c1dc807dfcaf87e3-a1b60-mpw9k] [640_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0016' from sub-workflow 'CallGenome'
[2026-06-05T13:59:55.834795Z] [nf-91623cc82d62e918c1dc807dfcaf87e3-a1b60-mpw9k] [640_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0016] Task initiated on local node
[2026-06-05T13:59:55.897168Z] [nf-91623cc82d62e918c1dc807dfcaf87e3-a1b60-mpw9k] [640_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0016' launched from sub-workflow 'CallGenome'
[2026-06-05T13:59:55.897891Z] [nf-91623cc82d62e918c1dc807dfcaf87e3-a1b60-mpw9k] [640_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0008' from sub-workflow 'CallGenome'
[2026-06-05T13:59:55.901593Z] [nf-91623cc82d62e918c1dc807dfcaf87e3-a1b60-mpw9k] [640_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0008] Task initiated on local node
[2026-06-05T13:59:55.962506Z] [nf-91623cc82d62e918c1dc807dfcaf87e3-a1b60-mpw9k] [640_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0008' launched from sub-workflow 'CallGenome'
[2026-06-05T13:59:55.963164Z] [nf-91623cc82d62e918c1dc807dfcaf87e3-a1b60-mpw9k] [640_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0009' from sub-workflow 'CallGenome'
[2026-06-05T13:59:55.966388Z] [nf-91623cc82d62e918c1dc807dfcaf87e3-a1b60-mpw9k] [640_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0009] Task initiated on local node
[2026-06-05T13:59:56.027523Z] [nf-91623cc82d62e918c1dc807dfcaf87e3-a1b60-mpw9k] [640_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0009' launched from sub-workflow 'CallGenome'
[2026-06-05T13:59:56.028174Z] [nf-91623cc82d62e918c1dc807dfcaf87e3-a1b60-mpw9k] [640_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0009' from sub-workflow 'CallGenome'
[2026-06-05T13:59:56.031344Z] [nf-91623cc82d62e918c1dc807dfcaf87e3-a1b60-mpw9k] [640_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0009] Task initiated on local node
[2026-06-05T13:59:56.092767Z] [nf-91623cc82d62e918c1dc807dfcaf87e3-a1b60-mpw9k] [640_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0009' launched from sub-workflow 'CallGenome'
[2026-06-05T13:59:56.093462Z] [nf-91623cc82d62e918c1dc807dfcaf87e3-a1b60-mpw9k] [640_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0002' from sub-workflow 'CallGenome'
[2026-06-05T13:59:56.096839Z] [nf-91623cc82d62e918c1dc807dfcaf87e3-a1b60-mpw9k] [640_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0002] Task initiated on local node
[2026-06-05T13:59:56.559219Z] [nf-91623cc82d62e918c1dc807dfcaf87e3-a1b60-mpw9k] [640_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0015' launched from sub-workflow 'CallGenome'
[2026-06-05T13:59:56.559801Z] [nf-91623cc82d62e918c1dc807dfcaf87e3-a1b60-mpw9k] [640_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0015' from sub-workflow 'CallGenome'
[2026-06-05T13:59:56.563258Z] [nf-91623cc82d62e918c1dc807dfcaf87e3-a1b60-mpw9k] [640_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0015] Task initiated on local node
[2026-06-05T13:59:56.624083Z] [nf-91623cc82d62e918c1dc807dfcaf87e3-a1b60-mpw9k] [640_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0015' launched from sub-workflow 'CallGenome'
[2026-06-05T13:59:56.624735Z] [nf-91623cc82d62e918c1dc807dfcaf87e3-a1b60-mpw9k] [640_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0004' from sub-workflow 'CallGenome'
[2026-06-05T13:59:56.628335Z] [nf-91623cc82d62e918c1dc807dfcaf87e3-a1b60-mpw9k] [640_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0004] Task initiated on local node
[2026-06-05T13:59:56.789206Z] [nf-91623cc82d62e918c1dc807dfcaf87e3-a1b60-mpw9k] [640_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0000' launched from sub-workflow 'CallGenome'
[2026-06-05T13:59:56.789872Z] [nf-91623cc82d62e918c1dc807dfcaf87e3-a1b60-mpw9k] [640_1] [TaskManager] Launching command task: 'CallGenome+fixVcfHeader_chromId_000_chr1_0000' from sub-workflow 'CallGenome'
[2026-06-05T13:59:56.793241Z] [nf-91623cc82d62e918c1dc807dfcaf87e3-a1b60-mpw9k] [640_1] [TaskRunner:CallGenome+fixVcfHeader_chromId_000_chr1_0000] Task initiated on local node
[2026-06-05T13:59:56.854217Z] [nf-91623cc82d62e918c1dc807dfcaf87e3-a1b60-mpw9k] [640_1] [TaskManager] Completed command task: 'CallGenome+fixVcfHeader_chromId_000_chr1_0000' launched from sub-workflow 'CallGenome'
[2026-06-05T13:59:56.854310Z] [nf-91623cc82d62e918c1dc807dfcaf87e3-a1b60-mpw9k] [640_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0005' launched from sub-workflow 'CallGenome'
[2026-06-05T13:59:56.854911Z] [nf-91623cc82d62e918c1dc807dfcaf87e3-a1b60-mpw9k] [640_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0000' from sub-workflow 'CallGenome'
[2026-06-05T13:59:56.855693Z] [nf-91623cc82d62e918c1dc807dfcaf87e3-a1b60-mpw9k] [640_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0005' from sub-workflow 'CallGenome'
[2026-06-05T13:59:56.858438Z] [nf-91623cc82d62e918c1dc807dfcaf87e3-a1b60-mpw9k] [640_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0000] Task initiated on local node
[2026-06-05T13:59:56.859736Z] [nf-91623cc82d62e918c1dc807dfcaf87e3-a1b60-mpw9k] [640_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0005] Task initiated on local node
[2026-06-05T13:59:56.922730Z] [nf-91623cc82d62e918c1dc807dfcaf87e3-a1b60-mpw9k] [640_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0005' launched from sub-workflow 'CallGenome'
[2026-06-05T13:59:56.922824Z] [nf-91623cc82d62e918c1dc807dfcaf87e3-a1b60-mpw9k] [640_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0000' launched from sub-workflow 'CallGenome'
[2026-06-05T13:59:56.923427Z] [nf-91623cc82d62e918c1dc807dfcaf87e3-a1b60-mpw9k] [640_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0001' from sub-workflow 'CallGenome'
[2026-06-05T13:59:56.923969Z] [nf-91623cc82d62e918c1dc807dfcaf87e3-a1b60-mpw9k] [640_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0001' from sub-workflow 'CallGenome'
[2026-06-05T13:59:56.927163Z] [nf-91623cc82d62e918c1dc807dfcaf87e3-a1b60-mpw9k] [640_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0001] Task initiated on local node
[2026-06-05T13:59:56.928595Z] [nf-91623cc82d62e918c1dc807dfcaf87e3-a1b60-mpw9k] [640_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0001] Task initiated on local node
[2026-06-05T13:59:56.956602Z] [nf-91623cc82d62e918c1dc807dfcaf87e3-a1b60-mpw9k] [640_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0018' launched from sub-workflow 'CallGenome'
[2026-06-05T13:59:56.956688Z] [nf-91623cc82d62e918c1dc807dfcaf87e3-a1b60-mpw9k] [640_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0001' launched from sub-workflow 'CallGenome'
[2026-06-05T13:59:56.957231Z] [nf-91623cc82d62e918c1dc807dfcaf87e3-a1b60-mpw9k] [640_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0018' from sub-workflow 'CallGenome'
[2026-06-05T13:59:56.957711Z] [nf-91623cc82d62e918c1dc807dfcaf87e3-a1b60-mpw9k] [640_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0003' from sub-workflow 'CallGenome'
[2026-06-05T13:59:56.961017Z] [nf-91623cc82d62e918c1dc807dfcaf87e3-a1b60-mpw9k] [640_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0018] Task initiated on local node
[2026-06-05T13:59:56.962208Z] [nf-91623cc82d62e918c1dc807dfcaf87e3-a1b60-mpw9k] [640_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0003] Task initiated on local node
[2026-06-05T13:59:56.991233Z] [nf-91623cc82d62e918c1dc807dfcaf87e3-a1b60-mpw9k] [640_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0018' launched from sub-workflow 'CallGenome'
[2026-06-05T13:59:56.991829Z] [nf-91623cc82d62e918c1dc807dfcaf87e3-a1b60-mpw9k] [640_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0013' from sub-workflow 'CallGenome'
[2026-06-05T13:59:56.994892Z] [nf-91623cc82d62e918c1dc807dfcaf87e3-a1b60-mpw9k] [640_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0013] Task initiated on local node
[2026-06-05T13:59:57.106537Z] [nf-91623cc82d62e918c1dc807dfcaf87e3-a1b60-mpw9k] [640_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0012' launched from sub-workflow 'CallGenome'
[2026-06-05T13:59:57.107546Z] [nf-91623cc82d62e918c1dc807dfcaf87e3-a1b60-mpw9k] [640_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0012' from sub-workflow 'CallGenome'
[2026-06-05T13:59:57.108016Z] [nf-91623cc82d62e918c1dc807dfcaf87e3-a1b60-mpw9k] [640_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0007' launched from sub-workflow 'CallGenome'
[2026-06-05T13:59:57.109999Z] [nf-91623cc82d62e918c1dc807dfcaf87e3-a1b60-mpw9k] [640_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0002' from sub-workflow 'CallGenome'
[2026-06-05T13:59:57.110675Z] [nf-91623cc82d62e918c1dc807dfcaf87e3-a1b60-mpw9k] [640_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0012] Task initiated on local node
[2026-06-05T13:59:57.113755Z] [nf-91623cc82d62e918c1dc807dfcaf87e3-a1b60-mpw9k] [640_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0002] Task initiated on local node
[2026-06-05T13:59:57.142393Z] [nf-91623cc82d62e918c1dc807dfcaf87e3-a1b60-mpw9k] [640_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0012' launched from sub-workflow 'CallGenome'
[2026-06-05T13:59:57.142904Z] [nf-91623cc82d62e918c1dc807dfcaf87e3-a1b60-mpw9k] [640_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0008' from sub-workflow 'CallGenome'
[2026-06-05T13:59:57.146206Z] [nf-91623cc82d62e918c1dc807dfcaf87e3-a1b60-mpw9k] [640_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0008] Task initiated on local node
[2026-06-05T13:59:57.208397Z] [nf-91623cc82d62e918c1dc807dfcaf87e3-a1b60-mpw9k] [640_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0008' launched from sub-workflow 'CallGenome'
[2026-06-05T13:59:57.208940Z] [nf-91623cc82d62e918c1dc807dfcaf87e3-a1b60-mpw9k] [640_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0011' from sub-workflow 'CallGenome'
[2026-06-05T13:59:57.211914Z] [nf-91623cc82d62e918c1dc807dfcaf87e3-a1b60-mpw9k] [640_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0011] Task initiated on local node
[2026-06-05T13:59:57.241080Z] [nf-91623cc82d62e918c1dc807dfcaf87e3-a1b60-mpw9k] [640_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0006' launched from sub-workflow 'CallGenome'
[2026-06-05T13:59:57.241654Z] [nf-91623cc82d62e918c1dc807dfcaf87e3-a1b60-mpw9k] [640_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0006' from sub-workflow 'CallGenome'
[2026-06-05T13:59:57.244551Z] [nf-91623cc82d62e918c1dc807dfcaf87e3-a1b60-mpw9k] [640_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0006] Task initiated on local node
[2026-06-05T13:59:57.273607Z] [nf-91623cc82d62e918c1dc807dfcaf87e3-a1b60-mpw9k] [640_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0011' launched from sub-workflow 'CallGenome'
[2026-06-05T13:59:57.273686Z] [nf-91623cc82d62e918c1dc807dfcaf87e3-a1b60-mpw9k] [640_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0006' launched from sub-workflow 'CallGenome'
[2026-06-05T13:59:57.274184Z] [nf-91623cc82d62e918c1dc807dfcaf87e3-a1b60-mpw9k] [640_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0011' from sub-workflow 'CallGenome'
[2026-06-05T13:59:57.274490Z] [nf-91623cc82d62e918c1dc807dfcaf87e3-a1b60-mpw9k] [640_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0007' from sub-workflow 'CallGenome'
[2026-06-05T13:59:57.277803Z] [nf-91623cc82d62e918c1dc807dfcaf87e3-a1b60-mpw9k] [640_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0007] Task initiated on local node
[2026-06-05T13:59:57.278145Z] [nf-91623cc82d62e918c1dc807dfcaf87e3-a1b60-mpw9k] [640_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0011] Task initiated on local node
[2026-06-05T13:59:57.307573Z] [nf-91623cc82d62e918c1dc807dfcaf87e3-a1b60-mpw9k] [640_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0011' launched from sub-workflow 'CallGenome'
[2026-06-05T13:59:57.307656Z] [nf-91623cc82d62e918c1dc807dfcaf87e3-a1b60-mpw9k] [640_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0007' launched from sub-workflow 'CallGenome'
[2026-06-05T13:59:58.373984Z] [nf-91623cc82d62e918c1dc807dfcaf87e3-a1b60-mpw9k] [640_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0004' launched from sub-workflow 'CallGenome'
[2026-06-05T13:59:58.374488Z] [nf-91623cc82d62e918c1dc807dfcaf87e3-a1b60-mpw9k] [640_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0004' from sub-workflow 'CallGenome'
[2026-06-05T13:59:58.377015Z] [nf-91623cc82d62e918c1dc807dfcaf87e3-a1b60-mpw9k] [640_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0004] Task initiated on local node
[2026-06-05T13:59:58.406457Z] [nf-91623cc82d62e918c1dc807dfcaf87e3-a1b60-mpw9k] [640_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0004' launched from sub-workflow 'CallGenome'
[2026-06-05T13:59:58.520658Z] [nf-91623cc82d62e918c1dc807dfcaf87e3-a1b60-mpw9k] [640_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0002' launched from sub-workflow 'CallGenome'
[2026-06-05T13:59:58.521230Z] [nf-91623cc82d62e918c1dc807dfcaf87e3-a1b60-mpw9k] [640_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0002' from sub-workflow 'CallGenome'
[2026-06-05T13:59:58.524548Z] [nf-91623cc82d62e918c1dc807dfcaf87e3-a1b60-mpw9k] [640_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0002] Task initiated on local node
[2026-06-05T13:59:58.553535Z] [nf-91623cc82d62e918c1dc807dfcaf87e3-a1b60-mpw9k] [640_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0002' launched from sub-workflow 'CallGenome'
[2026-06-05T13:59:58.667580Z] [nf-91623cc82d62e918c1dc807dfcaf87e3-a1b60-mpw9k] [640_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0001' launched from sub-workflow 'CallGenome'
[2026-06-05T13:59:58.667654Z] [nf-91623cc82d62e918c1dc807dfcaf87e3-a1b60-mpw9k] [640_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0002' launched from sub-workflow 'CallGenome'
[2026-06-05T13:59:58.668100Z] [nf-91623cc82d62e918c1dc807dfcaf87e3-a1b60-mpw9k] [640_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0001' from sub-workflow 'CallGenome'
[2026-06-05T13:59:58.668456Z] [nf-91623cc82d62e918c1dc807dfcaf87e3-a1b60-mpw9k] [640_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0002' from sub-workflow 'CallGenome'
[2026-06-05T13:59:58.671056Z] [nf-91623cc82d62e918c1dc807dfcaf87e3-a1b60-mpw9k] [640_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0001] Task initiated on local node
[2026-06-05T13:59:58.672021Z] [nf-91623cc82d62e918c1dc807dfcaf87e3-a1b60-mpw9k] [640_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0002] Task initiated on local node
[2026-06-05T13:59:58.701999Z] [nf-91623cc82d62e918c1dc807dfcaf87e3-a1b60-mpw9k] [640_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0002' launched from sub-workflow 'CallGenome'
[2026-06-05T13:59:58.702056Z] [nf-91623cc82d62e918c1dc807dfcaf87e3-a1b60-mpw9k] [640_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0001' launched from sub-workflow 'CallGenome'
[2026-06-05T13:59:59.216974Z] [nf-91623cc82d62e918c1dc807dfcaf87e3-a1b60-mpw9k] [640_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0003' launched from sub-workflow 'CallGenome'
[2026-06-05T13:59:59.217406Z] [nf-91623cc82d62e918c1dc807dfcaf87e3-a1b60-mpw9k] [640_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0003' from sub-workflow 'CallGenome'
[2026-06-05T13:59:59.220427Z] [nf-91623cc82d62e918c1dc807dfcaf87e3-a1b60-mpw9k] [640_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0003] Task initiated on local node
[2026-06-05T13:59:59.249208Z] [nf-91623cc82d62e918c1dc807dfcaf87e3-a1b60-mpw9k] [640_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0003' launched from sub-workflow 'CallGenome'
[2026-06-05T13:59:59.313061Z] [nf-91623cc82d62e918c1dc807dfcaf87e3-a1b60-mpw9k] [640_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0013' launched from sub-workflow 'CallGenome'
[2026-06-05T13:59:59.313433Z] [nf-91623cc82d62e918c1dc807dfcaf87e3-a1b60-mpw9k] [640_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0013' from sub-workflow 'CallGenome'
[2026-06-05T13:59:59.315445Z] [nf-91623cc82d62e918c1dc807dfcaf87e3-a1b60-mpw9k] [640_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0013] Task initiated on local node
[2026-06-05T13:59:59.345167Z] [nf-91623cc82d62e918c1dc807dfcaf87e3-a1b60-mpw9k] [640_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0013' launched from sub-workflow 'CallGenome'
[2026-06-05T13:59:59.345424Z] [nf-91623cc82d62e918c1dc807dfcaf87e3-a1b60-mpw9k] [640_1] [TaskManager] Completed command task: 'CallGenome+completedAllGenomeSegments' launched from sub-workflow 'CallGenome'
[2026-06-05T13:59:59.345561Z] [nf-91623cc82d62e918c1dc807dfcaf87e3-a1b60-mpw9k] [640_1] [TaskManager] Launching command task: 'CallGenome+Indel_concat_vcf' from sub-workflow 'CallGenome'
[2026-06-05T13:59:59.346087Z] [nf-91623cc82d62e918c1dc807dfcaf87e3-a1b60-mpw9k] [640_1] [TaskManager] Launching command task: 'CallGenome+SNV_concat_vcf' from sub-workflow 'CallGenome'
[2026-06-05T13:59:59.346435Z] [nf-91623cc82d62e918c1dc807dfcaf87e3-a1b60-mpw9k] [640_1] [TaskManager] Launching command task: 'CallGenome+mergeRunStats' from sub-workflow 'CallGenome'
[2026-06-05T13:59:59.350725Z] [nf-91623cc82d62e918c1dc807dfcaf87e3-a1b60-mpw9k] [640_1] [TaskRunner:CallGenome+SNV_concat_vcf] Task initiated on local node
[2026-06-05T13:59:59.351253Z] [nf-91623cc82d62e918c1dc807dfcaf87e3-a1b60-mpw9k] [640_1] [TaskRunner:CallGenome+mergeRunStats] Task initiated on local node
[2026-06-05T13:59:59.373104Z] [nf-91623cc82d62e918c1dc807dfcaf87e3-a1b60-mpw9k] [640_1] [TaskRunner:CallGenome+Indel_concat_vcf] Task initiated on local node
[2026-06-05T13:59:59.379358Z] [nf-91623cc82d62e918c1dc807dfcaf87e3-a1b60-mpw9k] [640_1] [TaskManager] Completed command task: 'CallGenome+mergeRunStats' launched from sub-workflow 'CallGenome'
[2026-06-05T13:59:59.379410Z] [nf-91623cc82d62e918c1dc807dfcaf87e3-a1b60-mpw9k] [640_1] [TaskManager] Completed command task: 'CallGenome+SNV_concat_vcf' launched from sub-workflow 'CallGenome'
[2026-06-05T13:59:59.379431Z] [nf-91623cc82d62e918c1dc807dfcaf87e3-a1b60-mpw9k] [640_1] [TaskManager] Completed command task: 'CallGenome+Indel_concat_vcf' launched from sub-workflow 'CallGenome'
[2026-06-05T13:59:59.379626Z] [nf-91623cc82d62e918c1dc807dfcaf87e3-a1b60-mpw9k] [640_1] [TaskManager] Launching command task: 'CallGenome+Indel_index_vcf' from sub-workflow 'CallGenome'
[2026-06-05T13:59:59.380200Z] [nf-91623cc82d62e918c1dc807dfcaf87e3-a1b60-mpw9k] [640_1] [TaskManager] Launching command task: 'CallGenome+SNV_index_vcf' from sub-workflow 'CallGenome'
[2026-06-05T13:59:59.382615Z] [nf-91623cc82d62e918c1dc807dfcaf87e3-a1b60-mpw9k] [640_1] [TaskRunner:CallGenome+Indel_index_vcf] Task initiated on local node
[2026-06-05T13:59:59.383449Z] [nf-91623cc82d62e918c1dc807dfcaf87e3-a1b60-mpw9k] [640_1] [TaskRunner:CallGenome+SNV_index_vcf] Task initiated on local node
[2026-06-05T13:59:59.413326Z] [nf-91623cc82d62e918c1dc807dfcaf87e3-a1b60-mpw9k] [640_1] [TaskManager] Completed command task: 'CallGenome+Indel_index_vcf' launched from sub-workflow 'CallGenome'
[2026-06-05T13:59:59.413390Z] [nf-91623cc82d62e918c1dc807dfcaf87e3-a1b60-mpw9k] [640_1] [TaskManager] Completed command task: 'CallGenome+SNV_index_vcf' launched from sub-workflow 'CallGenome'
[2026-06-05T13:59:59.413592Z] [nf-91623cc82d62e918c1dc807dfcaf87e3-a1b60-mpw9k] [640_1] [TaskManager] Launching command task: 'CallGenome+removeTmpDir' from sub-workflow 'CallGenome'
[2026-06-05T13:59:59.415512Z] [nf-91623cc82d62e918c1dc807dfcaf87e3-a1b60-mpw9k] [640_1] [TaskRunner:CallGenome+removeTmpDir] Task initiated on local node
[2026-06-05T13:59:59.445312Z] [nf-91623cc82d62e918c1dc807dfcaf87e3-a1b60-mpw9k] [640_1] [TaskManager] Completed command task: 'CallGenome+removeTmpDir' launched from sub-workflow 'CallGenome'
[2026-06-05T14:00:01.763746Z] [nf-91623cc82d62e918c1dc807dfcaf87e3-a1b60-mpw9k] [640_1] [TaskManager] Completed sub-workflow task: 'CallGenome' launched from master workflow
[2026-06-05T14:00:10.030193Z] [nf-91623cc82d62e918c1dc807dfcaf87e3-a1b60-mpw9k] [640_1] [WorkflowRunner] Strelka somatic workflow successfully completed.
[2026-06-05T14:00:10.030193Z] [nf-91623cc82d62e918c1dc807dfcaf87e3-a1b60-mpw9k] [640_1] [WorkflowRunner] 
[2026-06-05T14:00:10.030193Z] [nf-91623cc82d62e918c1dc807dfcaf87e3-a1b60-mpw9k] [640_1] [WorkflowRunner] 	workflow version: 2.9.10
[2026-06-05T14:00:10.030246Z] [nf-91623cc82d62e918c1dc807dfcaf87e3-a1b60-mpw9k] [640_1] [WorkflowRunner] 
[2026-06-05T14:00:10.030253Z] [nf-91623cc82d62e918c1dc807dfcaf87e3-a1b60-mpw9k] [640_1] [WorkflowRunner] Workflow successfully completed all tasks
[2026-06-05T14:00:10.030261Z] [nf-91623cc82d62e918c1dc807dfcaf87e3-a1b60-mpw9k] [640_1] [WorkflowRunner] Elapsed time for full workflow: 18 sec