cmdline: /opt/conda/share/sentieon-202308.03-3/libexec/driver -t 31 -r Homo_sapiens_assembly38.fasta -i HCC1395_BL.md.bam --interval xgen-exome-hyb-panel-v2-targets-hg38_AND_altera_v3_targets_postQC_hg38_AND_foresight_clarity.bed --algo QualCal -k dbsnp_146.hg38.vcf.gz -k Mills_and_1000G_gold_standard.indels.hg38.vcf.gz -k Homo_sapiens_assembly38.known_indels.vcf.gz HCC1395_BL.table
This software is licensed to bgold@natera.com by Sentieon Inc.
progress 5% @chr1:119893964, elapsed 0.1s, est remaining 1.0s, peak mem 164MB, user 0.0s, sys 0.0s, output queue size 3964
progress 10% @chr2:19969480, elapsed 0.1s, est remaining 0.9s, peak mem 164MB, user 0.0s, sys 0.0s, output queue size 2492
progress 15% @chr2:189039272, elapsed 0.2s, est remaining 0.9s, peak mem 164MB, user 0.0s, sys 0.0s, output queue size 12888
progress 20% @chr3:97871842, elapsed 0.2s, est remaining 0.8s, peak mem 164MB, user 0.0s, sys 0.0s, output queue size 23358
progress 25% @chr4:88457270, elapsed 0.3s, est remaining 0.8s, peak mem 164MB, user 0.0s, sys 0.0s, output queue size 4524
progress 30% @chr5:146514854, elapsed 0.3s, est remaining 0.7s, peak mem 173MB, user 0.0s, sys 0.0s, output queue size 14563
progress 35% @chr6:127119291, elapsed 0.4s, est remaining 0.7s, peak mem 173MB, user 0.0s, sys 0.0s, output queue size 24529
progress 40% @chr7:128809450, elapsed 0.4s, est remaining 0.6s, peak mem 173MB, user 0.0s, sys 0.0s, output queue size 33997
progress 45% @chr9:2041589, elapsed 0.5s, est remaining 0.6s, peak mem 296MB, user 0.0s, sys 0.0s, output queue size 43368
progress 50% @chr10:32346763, elapsed 0.5s, est remaining 0.5s, peak mem 299MB, user 0.0s, sys 0.0s, output queue size 4246
progress 55% @chr11:48216810, elapsed 0.6s, est remaining 0.5s, peak mem 299MB, user 0.0s, sys 0.0s, output queue size 14708
progress 60% @chr12:21852368, elapsed 0.6s, est remaining 0.4s, peak mem 299MB, user 0.0s, sys 0.0s, output queue size 24257
progress 65% @chr13:49220338, elapsed 0.7s, est remaining 0.4s, peak mem 299MB, user 0.0s, sys 0.0s, output queue size 35309
progress 70% @chr15:42684116, elapsed 0.7s, est remaining 0.3s, peak mem 299MB, user 0.0s, sys 0.0s, output queue size 45344
progress 75% @chr16:30892586, elapsed 0.8s, est remaining 0.3s, peak mem 299MB, user 0.0s, sys 0.0s, output queue size 54910
progress 80% @chr17:42500707, elapsed 0.9s, est remaining 0.2s, peak mem 299MB, user 0.0s, sys 0.0s, output queue size 65605
progress 85% @chr19:5686416, elapsed 0.9s, est remaining 0.2s, peak mem 326MB, user 0.0s, sys 0.0s, output queue size 76013
progress 90% @chr19:55731999, elapsed 1.0s, est remaining 0.1s, peak mem 329MB, user 0.0s, sys 0.0s, output queue size 1462
progress 95% @chr22:36937342, elapsed 1.5s, est remaining 0.1s, peak mem 2480MB, user 5.4s, sys 5.7s, output queue size 3227
progress 100% @chrY:23164740, elapsed 1.5s, est remaining 0.0s, peak mem 2480MB, user 5.5s, sys 5.7s, output queue size 433
sw version: sentieon-genomics-202308.03
os version: Linux 6.12.88
cpu vendor: GenuineIntel
 signature: 000a06d1
  features: bfebfbff 7ffefbff
  extended: f3bfb7ef fb417ffe
  amd bits: 2c100800 00000121
     brand: Intel(R) Xeon(R) 6975P-C
threads: 31 max 384
algo: QualCal
license: sentieon:QualCal=31
input file size: 51395349
reads: 1001089
contig: 201779 intervals 37922265 bases
advance: 208647 calls 1.675 user 0.171 sys 2.180 real
done: 1 calls 0.328 user 0.148 sys 0.485 real
execute: 1 calls 0.004 user 0.011 sys 1.535 real
fetch_reads: 208647 calls 0.102 user 0.001 sys 0.165 real
fetch_ref: 2042 calls 0.025 user 0.010 sys 0.052 real
fetch_vcf: 2042 calls 0.707 user 0.050 sys 0.934 real
idle: 92 calls 0.003 user 0.002 sys 31.709 real
init: 1 calls 0.000 user 0.000 sys 0.000 real
update: 2207 calls 3.646 user 5.447 sys 9.747 real
overall: 2600693760 mem 8.873 user 15.541 sys 2.910 real
ls: cannot access '*.table.post': No such file or directory
ls: cannot access '*.recalibrated.bam': No such file or directory
ls: cannot access '*.recalibrated.bam.bai': No such file or directory
ls: cannot access '*.csv': No such file or directory
ls: cannot access '*.pdf': No such file or directory